LOCUS       DASGCC010000001        38822 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.001, whole genome shotgun sequence.
ACCESSION   DASGCC010000001 DASGCC010000000
VERSION     DASGCC010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 38822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38822
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.001"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..242)
                     /locus_tag="U1404_000001"
     CDS             complement(<1..242)
                     /locus_tag="U1404_000001"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5346999.1"
                     /translation="MKLSYEDKIEIYELRQSGQSIKNLSNQFTISESVIQYMLRLIDR
                     YGINIVKKGKNTYSPPELKQEMIDKVLLQKQSSLSVS"
     gene            complement(325..1053)
                     /locus_tag="U1404_000002"
     CDS             complement(325..1053)
                     /locus_tag="U1404_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5347000.1"
                     /translation="MRLDKFLVDCGVGSRTEVKKLLKNKQVTVNGQVETSPKQQIDEK
                     SDQIAVAGQVLSHETFVYYVLNKPKGVISATEDDRHRTVLDLLDNTARQKEVFPVGRL
                     DIDTHGLLLLTNNGQLAHVMLSPKKHVDKLYRAQVDGIMTQEDVERFAAGIELKDLTC
                     QPAQLTILSTDEAKQTSLVDITIREGKFHQVKRMVQACGKTVTDLQRLTMGPLRLDPK
                     LALGEYRRLTAAELKQLEVFGVEL"
     gene            complement(1044..1493)
                     /locus_tag="U1404_000003"
     CDS             complement(1044..1493)
                     /locus_tag="U1404_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347001.1"
                     /translation="MDYFYIMPLPQDLALEIANQWRYQPPLDAYTISANPETYAEMIS
                     PEARGDRFFAVIRNAALMGYFCIDQDGETVDIRLGMKPSLTGQGNGRAFYQAIEDYLV
                     EHVQPASIKLTVASSHQVAQKLFHALGFTEIEKQSEYIKMEKKLVCD"
     gene            complement(1500..1670)
                     /locus_tag="U1404_000004"
                     /pseudo
     CDS             complement(1500..1670)
                     /locus_tag="U1404_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028520.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            complement(1707..2870)
                     /locus_tag="U1404_000005"
     CDS             complement(1707..2870)
                     /locus_tag="U1404_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5347002.1"
                     /translation="MKRILEKASLLALSTMLVSTFAVSPAIPQMIEHFAQQGIAAAQV
                     ENLITVTSFAIMVTLLANGLVVRFLSERNIIIAGLLLMAIGGALPMFLTAYPLILLAR
                     ILLGLGIGLINARAINIIGNFFTGQERVQMMGLRGSAEVLGSAGLTLLVGWLTQFGWQ
                     PAFLVYLFALVILALFLLFVPKEELLARMEVKVEENAPKVKLDKTMWMMGIYLAFLAF
                     FVINVNTFLTIRIPQIVLAKGIGTAQQASLILSLMQVMGIVAGTVFSSLVGRLKGWLL
                     AVSYVVFGLAVVGIAFADNLWVLGLGGMVSGFFYSIILTIVFSQVTDRAPKALLNAVM
                     TIVLMGCNIGGATSAILPTYLEKLNPTPTGAFGIYAIGCALISAGLIYKQLKK"
     gene            3000..3614
                     /locus_tag="U1404_000006"
     CDS             3000..3614
                     /locus_tag="U1404_000006"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM5347003.1"
                     /translation="MSVIERLTKAAHLIDMDDIIREGHPTLRQVAEEVAFPLSDQEII
                     LGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQ
                     AYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKH
                     RIKLKGFNAIVVQHEIDHLNGIMFYDRIDPEHPFAVKEGMLVIE"
     gene            complement(3803..4588)
                     /locus_tag="U1404_000007"
     CDS             complement(3803..4588)
                     /locus_tag="U1404_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HEM5347004.1"
                     /translation="MTKQIHWDGALSQEGFDIIKGEGGVIVCPTKVGYIIMTADKAGL
                     ERKFDAKERKRNKPGVVLCGSMEELRELAQLTPEIDAFYQKHWDEDILLGCILPWKPE
                     AYAKLQAYGDGREELMTDVRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGK
                     GNRGKVEGIGERIASKVDLIIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPE
                     QGMDSRSISPCPVVIRKGLDIDKIMMHLSDHFNSWDYRQGEYY"
     gene            complement(4651..5244)
                     /gene="leuD"
                     /locus_tag="U1404_000008"
     CDS             complement(4651..5244)
                     /gene="leuD"
                     /locus_tag="U1404_000008"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEM5347005.1"
                     /translation="MHQFTTWTGTTVPLMNDNIDTDQLLPKQFLKLIDKKGFGKYLLY
                     AWRYLDDNYTDNPDFILNQPDYQGASILISGDNFGAGSSREHAAWALADYGFKVIIAG
                     SFGDIHYNNDLNNGILPIIQPKEVRDQLAQLAPDQEITVDLADQLIRTPFGEFPFDIE
                     QDWKHKLLNGLDDIGITLQYQDLITEYEGNRPSYWQE"
     gene            complement(5244..6635)
                     /gene="leuC"
                     /locus_tag="U1404_000009"
     CDS             complement(5244..6635)
                     /gene="leuC"
                     /locus_tag="U1404_000009"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEM5347006.1"
                     /translation="MSGKSIFDKLWDRHVITGQEGQPQLLYVDQHYIHEVTSPQAFDG
                     LREAGRQVRRPELTFATFDHNVPTVDIHNIRDVISKAQMDALAKNIEDFGIPHAAHGS
                     EHQGIVHMVGPETGRTQPGKFIVCGDSHTATHGAFGAIAFGIGTSEVEHVLATQTIWQ
                     VKPKRLLVEFVGQAQRGVYAKDFILALIARYGVDCGLGHVVEFAGPVIDRLSMEERMT
                     ICNMSIEFGSKMGIMAPDQTTFDYLRGRECAPADFDAAVADWKELYSDADTVYDKHLV
                     LDVSDLAPMVTWGTTPAMGVSFDEIFPAIRDHNDERAYAYMDLAPGQKAADIPVGYVF
                     LGSCTNARLSDLQLAARIVKGRKIAEQVTAIVVPGSRPVKRAAEKLGLDKIFMEAGFE
                     WRDPGCSMCLGMNPDKVPAGVHCASTSNRNFEDRQGFGAKTHLCSPAMAAAAALYGRF
                     VDTRQLDILKEGV"
     gene            complement(6632..7683)
                     /gene="leuB"
                     /locus_tag="U1404_000010"
                     /pseudo
     CDS             complement(6632..7683)
                     /gene="leuB"
                     /locus_tag="U1404_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910859.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
     gene            complement(7692..9254)
                     /locus_tag="U1404_000011"
     CDS             complement(7692..9254)
                     /locus_tag="U1404_000011"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEM5347007.1"
                     /translation="MRVIEFLDTTLRDGEQTPGVNFSIKEKVTIAKQLEKWGISAIEA
                     GFPAASPDSFEAVRQIAAAMTKTAVTGLARSVKSDIDACYEALKDAKYPQIHVFIATS
                     PIHREFKLQKTKEEILAQITEHVSYARERFEVVEFSPEDATRTELDYLLEVVQTAVDA
                     GATYINIPDTVGFTTPQHYGEIFRHLITNVKSDREIIFSPHCHNDLGMAVANTLSAIK
                     NGAGRVEGTINGIGERAGNAALEEVAVALEIRKDFYDVTSPIVLKEMLNTSELVSRFS
                     GIAIPRNKAVVGGNAFSHESGIHQDGVLKNPLTYEIITPELVGVKKNSLPLGKLSGRH
                     AFVEKLKELDLYFEEGDVASLFARFKNLADKKEKITDADIRALVAGTEISNRDGFQFK
                     DLRLDSQSDGSIQAQVIFINQDEEEVVVAESGKGSVEAVFNAVDQFFHQEISLERYHI
                     DAITDGIDAQARVLVAVENKATETIFNASGIDFDVVKASAIAYIHANVMVQKENSGQI
                     DKKLSEKELPTS"
     gene            complement(9818..10051)
                     /locus_tag="U1404_000012"
     CDS             complement(9818..10051)
                     /locus_tag="U1404_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEM5347008.1"
                     /translation="MLTSIIAGAIIGLIAGALTSSDDRRGCLGNIILGLAGSWIGQLL
                     FGDWGPQFAGMALVPSVFGAVLLVAIFSSSRRN"
     gene            complement(10260..11501)
                     /locus_tag="U1404_000013"
     CDS             complement(10260..11501)
                     /locus_tag="U1404_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEM5347009.1"
                     /translation="MVLPNFKENLAKYAKLLVSTGINVQPGHTVQLTIGVEQAELARL
                     IVKEAYARGAKEVLVNWLDDVIARERLVNVDVELLEQVHPQRITEMNYLLERKASRLV
                     VLSEDPGAYDGVDPEKLSRNARALSQALNPMRQASQANKISWTLGAASGLEWAKKVFP
                     NAASDEEAVDLLWDQIFKTCRIYEEDPIKAWEEHEARLVAKAKVLNDEQFVKLHYTAP
                     GTDLVLGMPKNHLWEAAGSVNAQGEHFIANMPTEEVFTAPDYRVADGYVTSTKPLSYN
                     GNIIEGIKVTFKDGEIVDVTAEKGDEVMKKLVFDNAGARGLGEVALVPDKSPISQSGV
                     TFFNTLFDENASNHLAIGQAYAFSIEGGTEMSQEELKEAGLNRSDVHVDFMIGSNKMN
                     IDGIREDGTRVPIFRDGEWAI"
     gene            complement(12092..12694)
                     /locus_tag="U1404_000014"
     CDS             complement(12092..12694)
                     /locus_tag="U1404_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM5347010.1"
                     /translation="MSNFAKLQETRRSIYALGKDLPVSNEEVVALVEKAMKESPSAFN
                     SQSSRAVVLFGAESEAFWNEIAYSELEKVTPAEAFEATKGRLAGFAAGAGTILFFEDQ
                     DVVKGLQESFPLYAENFPIWSEQAHGINLYAVWLAFAEKNIGMNVQHYNPLVDAQVAE
                     KYGIPANWKLRAQAPFGSIAAPAADKDYMADSDLVKVFGN"
     gene            complement(12930..13601)
                     /locus_tag="U1404_000015"
     CDS             complement(12930..13601)
                     /locus_tag="U1404_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM5347011.1"
                     /translation="MKKRNILVELLKGIGLVLLSTILWTLILSFATPESSSGIYEPFP
                     GFTVIAGILTSFILHIIMKYNQLRQAEQAAKASKSHIVVIEERNQALMKKANRLVEKH
                     QNLEKETILDINKSVSKIRTVEEKTVMKSTKIESSQEFGQFLRQMPEFMANKHIERLL
                     NEIFETENNLAQWKISYNQQVEYFNTLLHQFPISVIAKIIRLKDLEFYKEHSLTDFTD
                     EMLGL"
     gene            complement(13613..18004)
                     /locus_tag="U1404_000016"
     CDS             complement(13613..18004)
                     /locus_tag="U1404_000016"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HEM5347012.1"
                     /translation="MSDKFQLLLQQIGMPLDARQSGAFSTATIEKVVLHKVSKLWEFT
                     FRFETPLPLMDYQLFKARLATEFEKVGNKIQFSIVSDAEAFEAGLVEAYYPEAFTEDL
                     CQSAGFKALFQPLEVAYRDGVLWIKGPETIDTDHFRKNHLPNLVEQYKRFGFGNLAVD
                     IQVCQEMTQQQAEIFHAQNEEIYQQANEENLAALEQLAQMAPPPEAAQPFVPEYKKNR
                     PAKVNIEKAEITPMIEVDSEENRIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTL
                     QKWAKNEEEAQKFDMVKKGNWLRVRGNVETNNFTRDLTMNVQEVQEVKKEIRKDLMPE
                     GEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKA
                     GIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETTGLSAVNNALIQIAASKM
                     HKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVA
                     HNATFDVGFMNVNYERAGLPIISQPVIDTLEFARNLYPDFKRHGLGPLTKRFGVALEH
                     HHMANYDAEATGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKAHVKHATLYVIN
                     QVGLKNMFKLVSLSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGID
                     EAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGN
                     VHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPKAHFRTTSEMLDEFAFL
                     GESLAHEIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEETVAELTYQKAFEIYGNPL
                     PDIIDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVGSRGSVGSSFVATMIGI
                     TEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLG
                     FDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAFRAGTVGTVAAKTAYGFVRGYERD
                     YGKFYRDVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQ
                     TTHFNFHDIDENVLKLDILGHDDPTMVRKLQDLSGIDPQTIPADDKGVMALFSGTEIL
                     GVTPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVWLGNAQD
                     LIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEEERNGYIQ
                     AMKDNKVPDWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIRAK
                     AFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD
                     LYKSHATDFLIEEDTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGT
                     LVEKMDEMGILGKMPEDNQLSLFDDLF"
     gene            complement(18083..19117)
                     /gene="dhaQ"
                     /locus_tag="U1404_000017"
     CDS             complement(18083..19117)
                     /gene="dhaQ"
                     /locus_tag="U1404_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DhaKLM operon coactivator DhaQ"
                     /protein_id="HEM5347013.1"
                     /translation="MVFIRNRQATIIEDYLDGFCRTNPKVKKVKGLPIVLQKVQDDHL
                     VPIISGGGSGHEPAHIGFVGKGMLTAAVYGEIFTPPTAEEVLAAIRAVDKGKGVFLIV
                     KNFEADLVSFRKAIELARQEGIAVKYIVSHDDISVDTKNNFRMRHRGLAGTILLHKIL
                     GAAALTGYSLDELEQLGLSLATEIATIGFATKSAYLPNAALPLFDLEEGQISYGIGIH
                     GEEGYRTVRFESSEQLANEIVNKLKLKFRWKEGEDYILLVNNLGSMSEVEQGIFLNDI
                     CQFLELEGLQLSYIKTGKFMTSLDMGGISVTLCRVKDRKWLDFLEAPTEAAAWWATNF
                     YRNQISQEMT"
     gene            complement(19128..19673)
                     /gene="dhaS"
                     /locus_tag="U1404_000018"
     CDS             complement(19128..19673)
                     /gene="dhaS"
                     /locus_tag="U1404_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase transcriptional
                     activator DhaS"
                     /protein_id="HEM5347014.1"
                     /translation="MPTSLITKKRIAKAFKKQLSQKSFDKISVVDIMQEAGIRRQTFY
                     NHFLDKYELLDWIFETELQEQVTDNLTYISGIKLLDELLYYIESNQSFYRQLFEIKGQ
                     NDFVSYLEGYFMVLMEKIINEYQLQEGKMISQQDKHFLILYHANAWIGLIKEGLTQSP
                     CQIHSYWKQMVALVRESFVIL"
     gene            19821..20810
                     /gene="dhaK"
                     /locus_tag="U1404_000019"
     CDS             19821..20810
                     /gene="dhaK"
                     /locus_tag="U1404_000019"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003049938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM5347015.1"
                     /translation="MKKIINQPERVVDEMLKGLVFMHQDLVDRIDGFDVIIRKAEKTG
                     KVGIISGGGSGHEPSHAGFVGKGMLSAAVCGAVFTSPTPDQILEAIKAADEGAGVFMV
                     IKNYSGDIMNFEMAQELAEMEGIEVDSVVVDDDIAVENSLYTQGRRGVAGTILVHKIL
                     GHAAETGKSLAEIKELADRLVPQIKTIGLALSGATVPEVGKPGFVLEEDEFEYGVGIH
                     GEPGYKKEKLQPSAKLAEELVEKLAEGFDIQDGEHYGVLINGLGATPLMEQYVFANDV
                     AQLLAKKGVVVDYKKIGNYMTSIDMAGLSLTLIKLEDPSWIDALQAPVEVVAW"
     gene            20821..21396
                     /gene="dhaL"
                     /locus_tag="U1404_000020"
     CDS             20821..21396
                     /gene="dhaL"
                     /locus_tag="U1404_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM5347016.1"
                     /translation="MDAKQALLWMETFNKKIQEDKDYLSELDSPIGDGDHGGNMVRGM
                     AAVMQELSEKDYETADQVFKVVAMQLLSKVGGASGPLYGSAFMGITKASQAGADLADT
                     LQAGLEMIQKRGKAELGEKTMVDVWIPVIAALRESQLTTEIIHKAVQGTKDIAATKGR
                     ASYVGERSIGHIDPGSFSSGLLFEAMLEAGL"
     gene            21393..21767
                     /locus_tag="U1404_000021"
     CDS             21393..21767
                     /locus_tag="U1404_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002960428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM5347017.1"
                     /translation="MTKVGILLVSHSKNLAQGIIDLVSEVAKDIPITYCGGLEDGSIG
                     TSFEIVQERVEANPADTLLAFFDLGSARMNMELAADFTDKQILIQTVPVVEGCYTAAA
                     LLQAGADLETILEQLKELTINK"
     gene            21777..22487
                     /locus_tag="U1404_000022"
     CDS             21777..22487
                     /locus_tag="U1404_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003062665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM5347018.1"
                     /translation="MNLIGELLGTFILVLLGNGVVASCILSKTKAENSGWLTIVLGWG
                     IAVTIAVYISGIFGPAHLNPAVTIAMASIGSLPWAQVPGFLLAQFAGAMLASIILYLH
                     FYPHWQETKDSGTILATFSTGPALRHTASNLLGEALGTAVLVMGILAIGPNNVSAGLG
                     PIIVGLIVFAIGFSLGSTTGYAVNPARDLGPRIMHAILPIPNKGDSDWSYSWIPVAGP
                     ILGGVAGAILYNLLLNML"
     gene            complement(22825..24687)
                     /locus_tag="U1404_000023"
     CDS             complement(22825..24687)
                     /locus_tag="U1404_000023"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEM5347019.1"
                     /translation="MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLP
                     LANRVIEKAKNIMREELDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGS
                     DFILGPTHEETVTLLARDAVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDG
                     YSFHASYESLDQTYDDYKAAYEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRT
                     DLDRWVVLDKSVASFEEIPEDVLEAIKEELLAWSVSGEDTIAYSSESGYAANLEMATS
                     EYKPSTAVVVEEDLVKIATPDAKTIDEVAAFLNIAEEQTIKTMLFMADGEPVVALLVG
                     NDQVNDVKLKNHLGADFFDVAGPADAEKIFGAGFGSLGPVGLPENIKIIADRKVQDVK
                     NAVVGANEDGFHYTGANAGRDFQVTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIF
                     KLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYR
                     YAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRNERVGVK
                     FSDSDLIGLPIRVTVGKKAADGIVEVKIKGTGDTVEVHVDQLLETLQILTKENE"
     gene            complement(24911..26170)
                     /gene="rseP"
                     /locus_tag="U1404_000024"
     CDS             complement(24911..26170)
                     /gene="rseP"
                     /locus_tag="U1404_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEM5347020.1"
                     /translation="MKGILAFIFIFGVIVVVHEFGHFYFAKKAGILVREFAIGMGPKI
                     FAHTGKDGTLYTIRILPLGGYVRMAGWGEDKTEIKTGSPASLSLNEAGVVTRINLSGK
                     QLDSLSLPMNVTSFDFEEKLEITGLVLEESKTYRVDHDATIVEEDGTEVRIAPLDVQY
                     QNATVWGRLMTNFAGPMNNFILGILVFIILFFMQGGVANPSSNAVSITEGGALQAAGV
                     VTGDKILSVNGNTTDSYTEVATIISKAATDATTAPSFDLVVEHDGKNRHVSVTAEQVD
                     GAYRIGISPILKTGFVDKIIGGFQEAGATALRVVTALKNLIANFDVKQLGGPVAIYKV
                     SSQAAEFGLASVLGLMAALSINLGIFNLIPIPALDGGKIVMNILEAIRRKPLKPETES
                     YITLAGVAVMVVLMIVVTWNDIIRVFF"
     gene            complement(26180..26986)
                     /locus_tag="U1404_000025"
     CDS             complement(26180..26986)
                     /locus_tag="U1404_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEM5347021.1"
                     /translation="MTNDLQKRVIFGGIALAIFIPFLLAGGMAFQFFVGLLAIIATAE
                     LIKMHRLAPNSIEGVLAMLASLVLALPLQNYLTFLPTDGNYTAYAIVVFLLLGSTVFN
                     IGHYNYSDVVFPIASSFYVGIGFHSLILARMDGLNKVFFALCLVWATDIGAYLIGRQI
                     GRRKLLPKVSPNKTVEGFAGGILSAVVVAIIFLIVDKSLLAGYSFGMMLLLVVIFSIF
                     SQFGDLVESAIKRHFGVKDSGKIIPGHGGILDRFDGMIFVFPIMHFFGLF"
     gene            complement(26996..27751)
                     /locus_tag="U1404_000026"
     CDS             complement(26996..27751)
                     /locus_tag="U1404_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEM5347022.1"
                     /translation="MFKFNFKKKESIETAIEVPKHIAVIMDGNGRWAKKRMQPRIMGH
                     KAGMDALQKVTKTASDLGVKVLTVYAFSTENWSRPEKEVKFIMNLPVEFYDKYVPELH
                     ANNVKIQMIGDHSKLPVPTLNALYKAEQKTKSNTGLILNFALNYGGRDEVTRAVKAIA
                     QDVLDAKFNPGDIDEKLIADYLYTGTLSPTLRDPDLVIRTSGELRLSNFLPWQTAYSE
                     LYFTDIAWPDFDGEALKLAIKEYNRRHRRFGGV"
     gene            complement(27865..28188)
                     /gene="yajC"
                     /locus_tag="U1404_000027"
     CDS             complement(27865..28188)
                     /gene="yajC"
                     /locus_tag="U1404_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM5347023.1"
                     /translation="MEGLFLPLVMVAMIGFMFYSQRKQQKQRQEALNQIKKGDEIVTI
                     GGLFGIVDEIDDKKVVLDVDGVYLTFERGAIRNRVASSNTTSAVVEEVAVETTEATPE
                     AAIEE"
     gene            complement(28298..29590)
                     /locus_tag="U1404_000028"
     CDS             complement(28298..29590)
                     /locus_tag="U1404_000028"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEM5347024.1"
                     /translation="MTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIV
                     IDGTKYKLHLIPSGIFFPEKISVIGNGVVVNPKSLVKEINYLHDSGVTTDNLRISDRA
                     HVILPYHIKLDQLQEESKGENKIGTTNKGIGPAYMDKAARVGIRIADLLDKEIFAERL
                     RTNLAEKNRLFEKMYESTPIEFDEIFEEYYAYGQEIKKYVTDTSVILNDALDQGKRVL
                     FEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGP
                     FPTELHDEIGDRIREIGKEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVL
                     SGLETLKICVAYDLDGERIDHYPASLEQLKRCKPIYEEMPGWSEDITGVRSLDELPEA
                     ARNYVRRISELVGVRISTFSVGPGREQTNILESVWSAK"
     gene            29955..32186
                     /gene="gshAB"
                     /locus_tag="U1404_000029"
     CDS             29955..32186
                     /gene="gshAB"
                     /locus_tag="U1404_000029"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HEM5347025.1"
                     /translation="MLQKLSPNSPILQATFGIERESLRINSNHRVAQTPHPHKLGSRS
                     FHPYIQTDYSEPQLELITPIAQSTKEARRLLGAITDVAARSMDKQEYLWPLSMPPVIS
                     EEEIQIAQLDSDYEYQYRVGLGERYGKLVQSMSGIHYNFELGKDLTQQLFELSEETDF
                     IAFKNTLYLKLAQNFLNYRWLLTYLYGASSLAEKGFLTTEVGCVRSIRNSKYGYVNSD
                     NVHISFSSLQQYVADIEQAVQSGQLSAEKEFYSSVRLRGAKTSRDYLSKGISYLEFRS
                     FDLNPYDPLAISQETLDTVHLFILSLLWLDQLTDVDNTLAKADKLNNLIALSHPHTPL
                     PNDADATPILTAMKAIVLHFGLDDYYGQLIAHAEAALQDPRLTLSGKIAEQVEDGSLE
                     KFGQQQGQVFHDYAWTAPYALKGYENMELSTQMILFDAIQLGLNVEILDEEDQFLKLW
                     HGDHVEYIKNGNMTSKDNYVIPLAMANKVVTKKILDQAGFPVPAGAEFANKTDALRYY
                     GQVTSSAIVVKPKSTNFGLGISIFQEPASLADYEKALDIAFSEDSHVLVEEFVAGTEY
                     RFFILDGKCEAVLLRVAANVVGDGSSTIRELVEQKNQDPLRGRDHRSPLEIINLGDIE
                     LLMLEQQGYTPDTVLPEGVQAFLRGNSNISTGGDSIDMTDQMDESYKQLAAAMATAMG
                     AWACGVDLIIPDRTKPASKEDPNCTCIELNFNPAMYLHTYTYAGPGQSITPKILKKLF
                     PEL"
     gene            32754..35873
                     /locus_tag="U1404_000030"
     CDS             32754..35873
                     /locus_tag="U1404_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5347026.1"
                     /translation="MKIRNRSLFYTVGSVAVTAGLLLSLATSPIPSVHATEVAIENYP
                     SLAITKSEVTIQGYLIAPLNSSGTAFDATNKTNLALGASMDTAAADTIPIQLKEPLRS
                     QFNLVDHPELVGKLVRITGTSDTYMKRAGIKPATAIEIVDSSSTNVQPPTSENTATKP
                     SDLVSIPIATVRSGAQGTEYTVSGKIISLVNGWGGNGFYLQGSDGAGIYIYPGAALGY
                     QPGDTVQLTGTLGEYKGELQLTTVSNHKAISENFNTPITETNIAQLATQAQATLVSLK
                     NLTVGDIQSDSYQNSTFTVTDSEGQTVDVRLDSRTGIKTADLLNRINKGDKINLTAIL
                     STYNGKIQLKPFDLSHFEVIEKATTEAETGKTEAVTVGRIQGASHQSPLTNQSVMLKN
                     VVVTYVTSANNFYVQDVTPDGDVKTSDGINIFTDKLKTNVKVGDLVTVAGRVEEYQGR
                     GYAERDKTDLTITQIRATEVTVDGTAPVPSPIVLGLDRSIPADIIDNDGLAQFDPEQD
                     ALDFWESVEGMVVAVDDAKILGPLKNKEIYVTPATSQLPLNNVGGVNLRPEGNNTNII
                     PLLLKNGKQIVKSGDYFTGRIAGPVTYSYTNYKVYVDDSTLPTLHEGATKPETTTIIP
                     NDDKLTIASYNIENFSANSKSTSDAKVQRIAKSFVSDLHSPDIIGLIEVQDNNGATND
                     GTTDASKSAERLIAAIQAAGGPTYTYVDIAPENNKDGGQEGGNIRVGFLYNSKRVSLS
                     DKPIGTATQAVAWENGELNLSLGRIDPTNPAWAAVRKTLAAEFVFKGEKVVVLANHLN
                     SKRGDNGLYGKIQPVSFKSEEKRHILAQIIADFTKAGLAQNPNANIVMLGDFNDYEFT
                     KTIEILETGGMANLVSRHDASDRFSYFYNGNNQSLDNMLVSTNLLDRYAFDMVHVNSA
                     FMEEHGRASDHDPLLVQLDVTKAQEPTQPEPSDKQTDDSGTVNNSDDNGTTNNNKPTN
                     LSTSNQTAVNANDRSGATDKGQTTVTPTANNSQKKILPKTGGETSFVLITIGLVFLIA
                     CLVKKQKES"
     gene            35953..36819
                     /gene="hslO"
                     /locus_tag="U1404_000031"
     CDS             35953..36819
                     /gene="hslO"
                     /locus_tag="U1404_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEM5347027.1"
                     /translation="MDKIIKTLSKSGHFRAFVLDSTETVKTAQEKHNTMASSTVALGR
                     TLIANQILAANEKGDTKITLKILASGAVGAIISVANTKGQVKGYIQNPDLDYKRTATG
                     EVIVGPLVGNGQFLVITDYGTGHPYNSMTPLISGEIGEDFAYFLTDSQQTPSAVGLNV
                     LLDEEDKVQVAGGFLLQVLPGATEAEIARFEKRIQEMPAISSLLASENHIEALLSAIY
                     GDDDFKRLSEEEIGFVCDCSKDRFLDALASLPKTDLQEMKEEDKGVDITCQFCQTHYH
                     FDENDLEELING"
     gene            36812..37816
                     /gene="dusB"
                     /locus_tag="U1404_000032"
     CDS             36812..37816
                     /gene="dusB"
                     /locus_tag="U1404_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEM5347028.1"
                     /translation="MANLNTPFMIGDVEIPNRCVLAPMAGVTNSAFRTIAKEMGAGLV
                     VMEMISEKGLLYNNEKTLHMLHIDDNEYPMSIQLFGGDAEGLKRAADFIQKNTKANIV
                     DINMGCPVNKVIKNEAGAKWLKDPDKIYHIIKEVTSVLDIPLTVKMRTGWNNTDLAVE
                     NALAAESAGVSALAMHGRTREQMYTGTVDLETLTKVAGSLTKIPFIANGDIRTVEDAR
                     QRIEEVGADAVMVGRTAMGNPYIFNQINHYLETGEVLPDLSFDDKLNVAFDHLTRLTN
                     LKGESIAVREFRGLAPHYLRGSAGAAKIRGAVARAETIEQVQELFDQAREAYQERIAK
                     "
     gene            complement(37930..38172)
                     /locus_tag="U1404_000033"
     CDS             complement(37930..38172)
                     /locus_tag="U1404_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347029.1"
                     /translation="MKQYLFRQHTIHVHPSLNVFIGNDEAEMVLYSKEPDFTLLALLR
                     WLPDKNSIRIINRWKLTYEYDGNNNIYIHYDSDYRY"
     gene            complement(38169..38402)
                     /locus_tag="U1404_000034"
     CDS             complement(38169..38402)
                     /locus_tag="U1404_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347030.1"
                     /translation="MQIIQLNNFEIKISERLHSIYDGKNKILVIFPDHTAICCQVKLS
                     QAGGLLVDTFWGVEYEISGNMVTIYYTDEEELE"
     gene            complement(38422..38805)
                     /locus_tag="U1404_000035"
     CDS             complement(38422..38805)
                     /locus_tag="U1404_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347031.1"
                     /translation="MKKNLLKKTIVCFINLLVVLMAVAPPAVSAQAASRIETPVETKS
                     KHFSNLEGGGDLSYINLSGYSNRFGTAASGRSGTYFGPRGTYVTRDWSVNSGGGSHGG
                     SYWKLFNRNGQRIGTYDKYGNYLRP"
BASE COUNT        11033 a         9458 c         7936 g        10395 t
ORIGIN      
        1 gagactgaca gactcgactg cttttgaaga agtactttat caatcatttc ctgcttgagt
       61 tctggaggag aataagtgtt cttacctttc ttgacaatgt ttattccata cctatcaatc
      121 agtcgaagca tatattggat aacagattct gaaatagtaa attggtttga caagttcttg
      181 atagactgac cactttggcg tagttcatag atttcgattt tatcttcata gctcaatttc
      241 ataaaaatag caccccaaat gttagatttt ttctgtctaa cttttggggt gcagttcaat
      301 cgggagcaag tctcttctat ttatctataa ttccacacca aagacttcta attgctttaa
      361 ttcggcagca gtcaacctgc ggtattctcc aagcgctaat tttggatcta agcgaagagg
      421 ccccatggtc aatcgttgca agtctgtcac cgtctttcca caggcctgca ccatgcgttt
      481 gacctggtga aatttccctt ctcggatggt gatgtcaacg agcgaggtct gcttagcttc
      541 atctgtagag aggatggtca actgggctgg ttgacaggtt aagtctttca gctcaattcc
      601 tgccgcaaat cgttcgacat cctcttgggt catgatcccg tccacctgtg cacggtagag
      661 tttatcaaca tgttttttcg gagaaagcat gacatgagcc agctgaccgt tgttggttaa
      721 gaggagcaag ccatgggtat caatgtccaa gcgtccaact ggaaaaactt ccttctggcg
      781 agctgtatta tctagcaggt ccaagacagt ccgatgacgg tcatcctcgg ttgctgaaat
      841 aactcccttg ggtttgttca atacataata aacaaaggtt tcatgactca agacctgacc
      901 tgctactgca atctgatctg acttttcatc aatctgctgt tttggggagg tttctacttg
      961 gccgttgact gtgacttgct tgtttttcag gagtttcttg acttctgtcc gactgccaac
     1021 accgcaatcc actaaaaatt tatctaatcg catacgagtt tcttttccat tttgatatat
     1081 tctgattgct tttctatttc tgtaaaacca agagcatgaa agagtttttg agcaacttga
     1141 tgagagctag caactgtcag tttgatacta gctggctgaa catgctctac taaatagtct
     1201 tcaatagcct gatagaaagc tctgccattt ccctgacctg tcaaagaagg tttcataccc
     1261 aaacgaatgt caacggtctc gccatcttgg tcaatacaga aatagcccat gagggcggca
     1321 ttgcggatga ctgcaaaaaa gcggtcccca cgcgcctctg gtgagatcat ctcagcataa
     1381 gtctcggggt ttgcactaat cgtataggca tccaaaggtg gttgatagcg ccattggtta
     1441 gcaatttcca atgccagatc ctggggcagg ggcatgatgt aaaagtaatc cattcttcgg
     1501 aaattttttg ccaaattttt aatccgacgg ttttgggtgg cgtaactatc tgtctgataa
     1561 acataatcca catagcccaa ctgataggag ggaatcatgt ccttaaaaat caactgaaca
     1621 tcctcgggaa aacgtagtat taattcattt aagcggttat tttctaacat aagaatatta
     1681 taccaaaaag gagcggaaat ccgctcctac ttcttcagtt gtttataaat caagcctgcg
     1741 cttatcaagg cacagccgat ggcgtaaata ccaaaggcac ctgttggggt tgggttgagt
     1801 ttttccagat aagtcggtaa gatagcagat gtcgcaccgc cgatattgca gcccataagg
     1861 acgattgtca tgaccgcatt gagcaaggcc ttgggtgcac ggtctgttac ctgactaaag
     1921 acaatggtta gaatgatgct gtagaaaaat cctgacacca tgccaccgag tcccagcacc
     1981 cagagattat ccgcaaaggc aatgccgaca accgcgagtc caaagaccac gtaggaaaca
     2041 gctaaaagcc aacccttcaa acgaccaacc aggctactaa agaccgtccc tgccacaatc
     2101 cccatgacct gcataagact gagaatgaga ctggcttgct gagcagtacc gatgcccttg
     2161 gctaaaacaa tctgaggaat acgaatggtc agaaaggtat tgacgttgat aacaaagaag
     2221 gctaagaatg ccagataaat tcccatcatc cacatggtct tgtccagttt gaccttgggc
     2281 gcgttctcct caacctttac ctccatgcga gccagcaatt cctccttggg aacaaagaga
     2341 aggaagagag ccaagatgac caaggcaaaa aggtagacca agaaggcagg ttgccaacca
     2401 aactgggtca accaaccgac aaggagggtg agccctgcac ttcccaaaac ctctgctgaa
     2461 ccacgcaagc ccatcatctg tacccgctcc tgaccggtga aaaaattacc gatgatgtta
     2521 atggcacgcg cattgattaa gccaatcccc aaaccaagca agatgcgagc caataaaatc
     2581 agaggataag cagttagaaa catgggcaaa gctccaccga tggccataag caaaagccct
     2641 gcaatgataa tgtttcgttc agacaagaaa cggacaacta gaccatttgc caatagagta
     2701 accataatag caaaggaggt caccgtaatt aagttttcca cctgggccgc tgcaattccc
     2761 tgctgggcaa aatgctcaat catctgtgga atagctggcg agacagcaaa tgtcgaaacc
     2821 agcatggtgg atagggccaa caaactggct ttttctaaaa ttcttttcat ttttctccct
     2881 ttcaacgttc gtcttttact agtataacag atttgaaagc gaatggatag aaaagtccga
     2941 cttttattct ctcccatttc atgctatact tatcttaact atattcaaag gagagaatca
     3001 tgtctgttat tgaacgattg acaaaagctg cccatttgat tgacatggat gacatcatcc
     3061 gtgaagggca tccaacccta cgccaagttg ccgaagaagt tgcatttcca ctatctgatc
     3121 aggaaattat tttaggcgaa aaaatgatgc agttcctcaa acattcgcag gatcctgtca
     3181 tggctgaaaa aatgaaactc cgtggcggag ttggtctagc tgcacctcag attgacgttt
     3241 ccaaacgcat cattgctgtc ttagtcccaa atccagaaga tgaggaaggc aatccacctg
     3301 cccaagccta ctccctccaa gaggtcatgt acaaccctaa aatcgtggca cattctgtcc
     3361 aagaagctgc tatggaaggg ggcgagggct gcctatccgt tgaccgcgaa gtccaaggtt
     3421 acgttgtccg ccatgcgcgc gtgactgttg attacatgga caaaaacgga gaaaagcacc
     3481 gtatcaaact caaaggcttt aatgccatcg tggtccaaca cgaaatcgac cacctcaacg
     3541 gtatcatgtt ctacgaccgc attgacccag aacacccatt tgccgttaaa gaaggcatgt
     3601 tggtaattga ataaacataa gaaactgact gaaaaatttt cagccagttt tttatgtgag
     3661 tacgaaaaaa cgaccctttc ggatcgatct caataatagt cttttagttt acttttagta
     3721 ctaggcaacg agccgcaggc ataactggag ttaggcaagg tgagttaacg acgtaataaa
     3781 agataaacta aatgacgata tcttagtaat attccccttg tctgtagtcc caagagttga
     3841 aatggtcaga caagtgcatc atgattttat caatgtccag acccttacgg ataacaactg
     3901 ggcatgggct gatagaacgg ctatccatgc cttgttctgg aatgagttta ccatctttgt
     3961 ctaccataga caccataacc ccttgctcat agcgagtttc aatggtcttg tctggctgga
     4021 tagatgccac atagtcatcc gcctcgataa tcaaatccac cttagaagcg atacgctcac
     4081 cgataccttc taccttacca cgatttccct tacctgacgg gttagcagat gacgcataga
     4141 ccatacgacc ttctttttcc cacatttcct tggcaatctg ctcgccagct acaccaaact
     4201 tgataacaaa gcaagaagtc ccacgaacgt cggtcatcag ctcttcacga ccatcgccat
     4261 aggcttgcaa cttagcataa gcctctggtt tccaaggtag gatacacccc aacaaaatgt
     4321 cctcatccca atgtttttgg tagaaggcat caatctcagg agtcaactga gccaactcac
     4381 gaagctcctc catgctacca caaaggacta cgcccggctt attacgctta cgctctttag
     4441 cgtcaaactt acgctccaaa ccagccttgt cggcagtcat gataatataa ccaaccttag
     4501 tcgggcagac aatcacgcct ccctccccct tgataatgtc aaatccttct tgtgaaagtg
     4561 cgccatccca gtgaatttgt ttcgtcataa tagtttcctc ttttcttttg ttccatagca
     4621 gagcgatctg cttgttttct aatctttatt ttattcttgc cagtagcttg ggcgattccc
     4681 ctcatactca gtaatcaaat cctgatactg aagggtaatc ccaatatcat ctaagccatt
     4741 gagcaacttg tgtttccagt cttgttcgat gtcaaatggg aattccccaa aaggcgtccg
     4801 tatcaactga tctgccaagt caaccgtgat ttcttggtca ggagccagct gagctagttg
     4861 gtccctgact tctttgggct ggataatggg cagaatgcca ttgttcaagt cattgttgta
     4921 atgaatatct ccaaaggagc ctgcaatgat aaccttgaag ccataatctg ccagagccca
     4981 agcagcgtgt tccctagaag aacctgctcc gaagttatcc ccagatatga ggatactagc
     5041 gccttgatag tcaggctggt tgagaatgaa atcaggattg tccgtgtagt tatcgtccaa
     5101 gtaccgccaa gcatatagca aatacttgcc aaagcccttt ttgtcaatca gcttgagaaa
     5161 ctgcttgggc aagagctggt cggtatcaat attatcattc atgagcggaa cagtcgtccc
     5221 tgtccatgtg gtaaattggt gcattagact ccctccttga gaatgtctag ctgtctggtg
     5281 tcgacaaaac gtccataaag cgcagctgcg gcagccatcg caggactaca caagtgggtc
     5341 ttggccccaa agccctgtcg gtcttcaaag tttcgattac ttgtagaggc gcagtggaca
     5401 cccgcaggga ccttgtctgg attcatgccc agacacatgg agcaaccagg atcccgccac
     5461 tcaaaaccag cctccataaa aatcttgtct agaccaagct tttctgcagc tcgcttgaca
     5521 gggcgactgc ctggtacgac aatagccgta acctgctctg ctattttccg ccccttaaca
     5581 atcctagctg ccagctgcaa atcgctgagg cgagcattgg tacaggagcc taggaagaca
     5641 tagccaacgg gaatgtccgc agccttttgc ccaggagcta agtccatgta agcataggcc
     5701 cgctcgtcgt tgtggtcacg gatggctggg aagatttcgt caaagctaac ccccatagca
     5761 ggcgtcgttc cccaagtgac catgggtgcc aagtctgaca catcaaggac caggtgcttg
     5821 tcatagacgg tgtccgcatc cgagtagagc tccttccagt ctgccaccgc cgcatcgaag
     5881 tccgctggtg cacactcccg acctcgcagg tagtcaaagg tggtctggtc tggagccata
     5941 atgcccatct tagagccgaa ctcaatggac atattgcaga tagtcatccg ctcttccatg
     6001 ctgagtcggt cgatgacggg tcctgcgaac tcgaccacat gacccaaacc acaatccacg
     6061 ccgtagcggg caatcagagc caggataaag tccttggcat agacacctct ttgcgcctga
     6121 ccgacaaact ctactaagag tcgcttaggt ttgacctgcc aaatggtctg ggtagcgaga
     6181 acgtgctcca cttcagaagt accaatccca aaggcaatag ctccaaatgc tccgtgagtc
     6241 gctgtatggc tatctccgca gacaatgaac ttacctggct gggtcctgcc tgtttctggt
     6301 ccaaccatgt ggacaatccc ctgatgttcc gaaccgtggg ctgcgtgggg aatgccgaaa
     6361 tcttctatat tcttagccaa ggcatccatc tgagccttgg aaatgacatc acggatattg
     6421 tgaatatcaa cggttggtac gttgtggtca aaagtcgcaa aggtcaattc tggccgacgg
     6481 acctgacgtc ctgcctctcg cagaccatca aaagcctggg gactggtcac ctcatgaata
     6541 tagtgctggt ccacatagag gagctggggc tgaccttcct gccctgtaat cacatggcgg
     6601 tcccagagct tatcaaaaat agatttgcca ctcatatctc ttccctctca atctgggcaa
     6661 taatggcctc cgtcatctcc ttggtagaag cggtcccacc gagatccttg gtgaaaatgc
     6721 cctctgcaaa gaccgcttca acagcttgac gaatggtctg acctgcttgg accaaatcaa
     6781 aactttcttc cagcatcatg gcaacagata gaatcatact gacaggattg gcaatgccct
     6841 gaccggcaat atccggtgcc gaaccatgga taggttcgta gagactggga cctgctaccg
     6901 catgactagc agaaggcaga acccccagcg ttcctgttaa tacgctggcc tcatccgaca
     6961 aaatatctcc gaaaagattt tccgtcacca agacgtcaaa tcgactagga ttggtaatca
     7021 agagcatggc tgcactgtcc accaactggt gctccaaggt cacatctggg tagtccttcg
     7081 ccacttcatc cgccaccttc cgccataatt ttgacgtcgc cagtacattc tgcttatcaa
     7141 tgctggtgac tttttttgtc ttttttgggc taggtcaaag gcagagcgga caactcgttc
     7201 aatctcttct gcctgatagg tattgctatc gctggcttgg tatgtttcca gaatatgctt
     7261 tccaaaataa attccgcctg tcaactcccg taccatgacc aaatccacac cgtccagccg
     7321 gtcggctttc agaggagaat agtctttcag gctatcaaaa attttcaccg gacggatatt
     7381 ggcaaagaga cctaattcct tcctaagttg aagcagacct tgttctggtc gaacagctgc
     7441 atcatcatac tgagggctac cgatagctgc taacaaaatc gcatccgcct gacggcaggc
     7501 ttgtaaggta gcatttggta gaggatggcc agccgcatca atcccagcgc caccaaaagc
     7561 tctctcctca atctcataat caaatcctac ttgcccagca acagcctcga ggacttctag
     7621 gccagcctcc atgatttcag gaccgattcc atcaccagcc aaggctacaa tttttttcgt
     7681 catatttcct cctagctagt tggcaactct ttctcagata atttcttatc aatctgtccg
     7741 ctattttctt tctgtaccat gacattggca tggatatagg caatggcaga agccttcacc
     7801 acgtcaaagt caataccaga ggcattgaag attgtttccg ttgccttgtt ttctacagcg
     7861 acaagcacac gcgcctgggc atcaattcca tcggtgatgg cgtcaatatg gtagcgttcc
     7921 aagctaatct cttggtggaa gaattggtca acagcattaa agacagcctc aacagaaccc
     7981 ttgcctgact ctgcaacaac cacttcttcc tcatcctgat tgatgaagat gacctgagcc
     8041 tgaatacttc cgtcagactg actatccaaa cgcaaatctt taaattggaa accatcacgg
     8101 ttgctaattt ctgtcccagc taccaaggca cgaatatctg catccgtgat tttttccttc
     8161 ttgtctgcca ggtttttgaa acgagcaaac aagctagcaa cgtctccttc ttcaaaatac
     8221 aagtctagtt cttttagctt ttctacaaag gcgtgacgac cagatagttt acccagtggc
     8281 agagaatttt tcttgacccc taccaactca ggtgtaatga tttcataggt caatggattt
     8341 ttcaagacac catcctgatg gataccagat tcatgtgaga aggcattgcc accaaccacc
     8401 gccttattgc gtggaatggc aatcccagaa aagcgagata ctaattccga agtattgagc
     8461 atttccttaa gaacaatcgg actagtcaca tcatagaaat ctttccgaat ttcaagggca
     8521 acagctactt cttcaagggc cgcattccct gctcgctcac cgataccgtt gatggtgccc
     8581 tcgacacgac cggcaccgtt tttaatggcc gatagggtat tggcaactgc catacctagg
     8641 tcattgtggc aatgcggact gaaaataatc tcacggtccg atttgacgtt tgttatcaag
     8701 tgacggaaaa tttctccgta gtgctgagga gtcgtaaagc cgactgtatc tggaatgttg
     8761 atgtaggtcg caccagcatc taccgctgtc tgcaccactt caagcaagta atccaactcc
     8821 gtccgtgtcg catcctctgg cgagaattcc accacctcaa aacgctcacg tgcatagctg
     8881 acatgttcag tgatttgcgc caaaatttct tctttggtct tttgaagttt aaattcacga
     8941 tgaatggggc tggtcgcaat gaaaacatgg atctgcggat acttggcatc tttcagagcc
     9001 tcataacaag catcaatgtc tgattttact gaccgtgcca aacctgtcac agccgtcttg
     9061 gtcatcgctg ccgcaatctg acgaaccgct tcaaacgaat caggactggc cgctgggaaa
     9121 cccgcttcaa tagcagaaat cccccatttt tccaactgct tggcgatggt cactttttct
     9181 ttaatcgaaa aattcacacc cggcgtctgt tcaccatctc gtaaagtcgt atctaaaaat
     9241 tcaatcacac gcataagaat acctttctaa acaatacaaa cttcaatact atcgtccttg
     9301 agtttacttt tagtactagc tccaacagtc agagtagtga ctgttggagg tgggaaatag
     9361 agcgaactta gttcgcatca aaaaccgcag gcataactgg agttaggcaa ggcgagttca
     9421 aataatgacg aaattatttg aagttggaaa taaggaaacg aagtttcctc attcgtcgaa
     9481 gtaataaaag taaactaaat gacgataaaa aagaaaacac ctcgaggata actacctgcg
     9541 agatgttgtc aacagcgccc gcttggtaag ccaaacagga ctaatgcatt ctttcagcac
     9601 tagcccgacc gtcgcaacaa caatgcaaag aattttgtag tgacaggttt catttgactt
     9661 tttcctttca gtattttaat tatttacaat gataccctac ttattttcac ttgtcaacag
     9721 aaaaatggaa attttctgaa aaatccgaac aatacggcaa ttcgtacaaa tccagataat
     9781 agaaaaccat gctccaattg aagcacggtt caggtgttta attccgtcta gaactgctaa
     9841 aaattgccac cagcaatact gctccaaaga ctgacggtac cagggccata ccagcaaact
     9901 gtggtcccca atcaccgaag agcagttgtc caatccacga accagcaagt ccaaggatga
     9961 tatttccaag acaaccacga cggtcatctg acgaagtaag agcacctgca atcaagccaa
    10021 taatggcacc tgcgataata cttgttaaca tcttgttttc ctccttattt acaaaatggg
    10081 agtgggaaag aactcgacta ggtcaaaaag agttcgtctt cccacccccg cacagttgat
    10141 taggtcagat ttggagtgca aaacacgaac aaatctgcca atcaaccact gcgctgagat
    10201 gttgatacga actctgagaa gtgatcctgg gctttttgcc cagtttcatt caaatatcat
    10261 taaatcgccc actcaccatc acggaagatt ggcacacggg taccgtcttc gcggataccg
    10321 tcaatgttca tcttgttaga accaatcatg aagtccacgt gaacatctga gcggttgaga
    10381 ccagcttctt tgagctcttc ttggctcatt tccgtaccac cttcgataga aaaggcatag
    10441 gcttgaccaa tcgccaagtg gtttgaggca ttttcatcaa agagagtatt gaagaaggtc
    10501 acgcctgatt gagaaatcgg actcttgtct ggaacaaggg caacttcacc gagaccgcga
    10561 gcaccagcat tatcaaagac taatttcttc atgacttcat cgcctttttc agccgtcacg
    10621 tccacgattt caccgtcttt gaaggttacc ttgatgcctt cgatgatgtt accgttgtag
    10681 ctgagtggtt ttgtagacgt tacataaccg tctgccacac ggtagtcagg tgctgtgaag
    10741 acctcttctg ttggcatgtt ggcaataaag tgttcacctt gggcattgac cgaaccagcc
    10801 gcttcccaca agtgattctt cggcataccg agaacgaggt cagttcctgg tgctgtgtag
    10861 tgcaatttga caaactgctc gtcgttaagc accttagcct tagccaccaa gcgtgcttcg
    10921 tgctcttccc aagccttgat tggatcttcc tcgtagatac ggcaagtctt gaagatttgg
    10981 tcccaaagga ggtccactgc ctcttcgtca gacgctgcat ttggaaagac ttttttagcc
    11041 cattccaaac cagaggctgc accgagtgtc cagctgattt tgttagcttg ggatgcttgc
    11101 cgcattgggt tcaaagcctg gctgagtgca cgagcgttgc gagacaattt ctctggatcc
    11161 acgccatcgt aagcacctgg atcttctgac aaaacaacca aacggctagc cttacgctcc
    11221 aaaaggtagt tcatttcagt gatgcgttgt ggatgaactt gttccaagag ttccacatcg
    11281 acattgacca aacgctcacg agcaatcaca tcgtccaacc agttgaccaa gacttcctta
    11341 gcaccgcggg cgtaagcttc tttgacaatc aaacgagcca actcagcctg ctccacacca
    11401 attgtcaact gcaccgtgtg accaggttgg acattgatac ctgttgaaac caagagttta
    11461 gcatatttag cgagattttc tttaaaattt ggtaatacca tctttttctc ctttgtactt
    11521 tgagataccc tattattgta tcatatttta agctagacag ataaaaaaac ttcctgctga
    11581 tgcaggaagt tagctctggg agatagttga agcttggaga tgaaacgaat ggagttcgtg
    11641 tcagcaagcc gcaggcataa ccctgctcct ctcttgtttt aagggaacag gccgaaaaac
    11701 tccactggag cttttcactc atcaaggtca gctgacaacg gatatttcca attttcgcag
    11761 ggtaaagttt acagtttgct tttagtacta ggcaacgagc tacaggctgc ttcaacagtc
    11821 agggtagtga ctgttgaagg ttggaaatct tacttacgat agtaagtaac gctcgtaacg
    11881 tacgccaaag cgagttcaaa caatccagtg gattgtttga agttggaaat aaggaaacga
    11941 agtttcctca actgccgacg taataaagca aactgaaata aattatatat actcaatgaa
    12001 aattggaatc agactaggcg acgtagatgt agatagaact taagttcatc acatcaagtc
    12061 aacaacgtct gatcccaatt ttcgcagagt attagttacc aaaaaccttt acaaggtcag
    12121 aatccgccat atagtctttg tctgctgctg gagctgcaat gcttccgaat ggtgcttggg
    12181 cacggagttt ccagttagct gggataccgt atttttcagc aacttgtgca tcaaccaatg
    12241 ggttgtagtg ttgtacgttc ataccgatat ttttctcagc aaaggccaac catactgcgt
    12301 acaagttgat accatgagct tgttcagacc agattgggaa gttttcagcg taaagtggga
    12361 agctttcttg taagcctttc accacgtctt ggtcttcgaa gaacaagata gtaccggcac
    12421 cagccgcaaa accagctaag cgaccttttg tagcttcaaa agcttctgca ggcgttactt
    12481 tttccaattc gctgtaggca atttcgttcc agaaagcttc tgactccgca ccaaaaagta
    12541 ccactgcacg gctagattgt gagttgaaag ctgatggaga ttctttcatg gctttctcaa
    12601 caagtgctac tacttcttca tttgatactg gcaagtcttt accaagtgcg tagattgaac
    12661 ggcgagtttc ttgaagtttt gcaaagtttg acatatgttt tcctcttttc tatttgttac
    12721 tacatagtag tttttatcac tatagggaga ttgtatcatt attactaagt agtgtcaaat
    12781 tcctagtctg acttttttat actccgtgaa aattaagcta gttacagcag atagtctgat
    12841 tttcataaag tagtgacaga gaatttacaa aaagatggca aaaaaagcct atcaaatact
    12901 taagatacat tgatagaccc ttctttatct tatagcccca acatctcgtc tgtaaaatca
    12961 gtcagcgaat gttccttata aaattccaag tccttcaggc gaatgatttt ggcaatgacg
    13021 ctaatcggaa actgatgcaa cagagtattg aaatactcaa cctgctgatt gtatgaaatc
    13081 ttccattgtg ctaaattatt ttctgtttca aaaatttcat tcagtaacct ttcaatatgt
    13141 ttattggcca tgaattccgg catttgacgc aaaaattgac caaattcttg tgaactttca
    13201 atcttggtgg atttcataac agttttttct tcaaccgttc gaattttgga aacggattta
    13261 ttgatgtcca aaatggtttc tttttcaaga ttctggtgtt tttcaaccaa gcggtttgct
    13321 ttcttcatca aggcctgatt gcgctcttca ataacaacga tatgactttt actagctttc
    13381 gcggcttgtt cagcctgacg aagttggtta tacttcataa tgatatggag aatgaaactc
    13441 gttagtatac cagcaatcac agtaaaacct ggaaaaggtt cgtaaatacc tgatgatgat
    13501 tccggtgtgg caaaagataa gatcaatgtc cacaagatag tagaaagcag tactagacca
    13561 attcctttta ataactcaac taaaatattt ctttttttca tcatttcctt ttttaaaaca
    13621 aatcatcaaa gagactcaac tggttatcct ctggcatttt accgaggatg cccatttcat
    13681 ccattttttc aacaagcgta cctgacaatc caccacgttt acggagttct gtcttggaga
    13741 gaaattctcc ttcggcacgc gccgccacaa cctgcttggc aacgttctct cccagaccat
    13801 ccatagcgac aaatggtggg atgagggtat cttcttcaat cagaaagtcg gtcgcatggg
    13861 atttgtagag gtccaactta ccgaacttga agccacgttc cagcatttca tttaccaatt
    13921 caagtgtggt atagagatcc tgctcaacgt tcgaagcttc attgtttttc ttcttgaggg
    13981 cgatttcttc catcttagcc ttgactcgtt ccaagccacc ggacatggtt gccaaatcaa
    14041 atgccttggc ccgaatagag aaataagcgc aatagtagta aagtgggtga tgaaccttga
    14101 aataggcaac ccgcaaggcc atcataacgt aggcagccgc gtgggcttta gggaacatgt
    14161 acttgatttt tccacaggat tcgatgtacc agtctggcac cttgttatcc ttcatggctt
    14221 gaatgtagcc atttcgctct tcctcagaaa tcttgagcca caagcccttc cgcacccgct
    14281 ccatgatatt aaaggccatc ttaggtggca aacctgcgtg catgaggtaa accatgatgt
    14341 catcccgaca accgataaca gtagatagat tagcaattcc tgccttaatc aagtcctggg
    14401 cattgcccaa ccaaacgtct gtaccgtgcg atagaccaga taactgcaag agttccgaaa
    14461 aagtggtcgg tttggtttcc tccaccatcc cccgtacaaa gttggttcca aattcaggaa
    14521 tgcccagcat acctgtcggt gtcccaatct gctctggggt aacacccaga atttccgtac
    14581 cagaaaaaag agccataacc cccttatcat cagcaggaat agtttgcgga tcgatgcctg
    14641 acaagtcctg caacttccga accatggttg gatcatcgtg tcccagaata tcgagtttca
    14701 agacgttttc atcaatatcg tggaagttaa agtgggtggt ctgccagctg gctgtcacat
    14761 catcggcagg atactgaaca ggggtaaagt catagacatc catgtagtca ggaaatacaa
    14821 taattccccc tgggtgctga ccagtcgttc gtttgacacc agctgctcca gcagccaggc
    14881 gttctacttc cacatctcta tagaatttgc cataatcccg ctcatagcct cggacaaaac
    14941 cataggcagt cttggcagct accgtaccaa ccgttcctgc acggaaggca ttttcttcac
    15001 caaaaatatc ccgaacatcc aaatgggcag acggttggtc atcccctgag aagttcaagt
    15061 caatatcggg aaccttgtct ccatcgaaac caaggaaggt ctcgaaagga atgtcctgtc
    15121 catctttttt atacttggtc ccacactttt cacaatcctt gtctggcagg tcaaaacctg
    15181 aaccatagga accatctgtg ataaattcac tgtgttgaca atttggacag acatagtgag
    15241 gaggcatagg gtttacttcg gtaatcccaa tcatggtcgc aacgaaactg gagccgacag
    15301 acccccgtga acccaccagg tagccccgct cgttggaacg gtgcaccaac atctgcgatg
    15361 ccaggtaaat cacggcgaat ccattaccta aaatggaagt cagttccttt tcgattcgca
    15421 ggtcgataat gtctggcaag gggttgccat aaatctcaaa ggctttctga taggtcaatt
    15481 ccgcaaccgt ttcctcggcc ttctcaatat aaggcgtata aaggtcggtc ttaaccacct
    15541 gaacatcttc aaaccggtcc agcatggcat tgggattggt aatgacaatc tcatgggcca
    15601 gactttctcc caagaatgca aactcgtcca acatctcgct ggtcgttcta aagtgggctt
    15661 ttggcagtgg tgctggctga gcgttctcac catttccgat agtccagtta atcggtgccc
    15721 cttgacctag agcacgaaca atgatttccc gatagatttc ctcttcgggg tcaatgtagt
    15781 gaacatttcc tgtcgccaga acaggcagac ctgccctacg tcctacctca atcaactgct
    15841 taatagtctc ttcaatctct gccatgtcct taaactgctc cttggcaatc atgggagcat
    15901 atagggcagg tggcataact tcgataaaat cataataggc tgccgtttta accgcttcat
    15961 ctatcccttt ggagagcaag tcatcgaaga cctcaccctc ttgacaggct gttcccaata
    16021 ttaaaccttc acgatgggca ttgagaacgg tccgtggaat acgtggaact ccttcaaaat
    16081 acttggtatt ggaaagagag accagtttga acatattttt caaaccaacc tgattaatca
    16141 catagagcgt ggcatgcttg acatgagcct tcttatagga atcctccgca atcagctccg
    16201 tatttagctg gttgagattg gtcaaattgt gcttctccaa ggcatctttt aggaagatga
    16261 agagcaggcg ccctgtcgcc tccgcatcgt agttagccat gtggtggtgt tcaagagcaa
    16321 caccaaaccg cttggtgaga ggacctaaac catgacgctt aaagtcggga taaaggttac
    16381 gagcaaattc caaggtatca atgacaggct ggctaataat aggtaagcct gctcgttcat
    16441 agttgacatt cataaagcca acgtcaaagg tcgcgttgtg ggcaaccatg acggaatctt
    16501 gacagaaatc ttgaaactca cgcagaactt gttctagagg tttagaacca cgcacatgct
    16561 catctgtgat tcctgtcaga tctgttgtaa attgactgag cggatgaccc ggatcgataa
    16621 actcatcaaa ttctgcaatg atattgccct tgtgcatctt agacgccgca atctgaatca
    16681 gggcattgtt aactgcagag agacctgttg tttccacgtc aaagaccaca taggtggcat
    16741 cagacaggac tacatctgct tcgttgtaag caataggcac agagtcctcg acaatattag
    16801 cctccatccc gaagagcggc ttaatcccag ctttacgggc agcatgatag ccatggggga
    16861 aggattgaac attgccgtgg tcggtaatcg ccaccgcctt gtgtccccag gctgctgcac
    16921 gcgccaccaa gtcctcaacg gcaggcaggg catccatagt agacatgttg gtatgggcat
    16981 gaaactcaac ccgcttctca ccctcaggca taaggtcctt acgaatttcc ttcttgacct
    17041 cctggacttc ctgtacgttc atagtcaaat cacgagtgaa attattggtc tccacattgc
    17101 ctcgcacccg caaccagttg ccctttttga ccatatcaaa cttctgggcc tcttcctcat
    17161 tcttagccca cttctgcaag gtaaaggacg aagtatagtc ggtcatctta aagttgataa
    17221 tgactcgccc cgtcttggtc gtcttctgct cgacctcaaa gaccagtccc tcaaagacaa
    17281 tccgattctc ctcgctatcc acctcaatca taggcgtaat ctcagccttt tcgatattga
    17341 ccttggcagg acgatttttc ttatattctg ggacaaatgg ctgagctgcc tctggtggtg
    17401 gcgccatttg agccagttgt tcaagggccg ccaagttttc ttcattagcc tgctggtaaa
    17461 tttcttcatt ttgcgcatgg aaaatctccg cttgttgctg cgtcatttcc tgacagactt
    17521 ggatgtccac cgcaagatta ccaaaaccaa atcgcttgta ttgctccaca agatttggca
    17581 gatgattctt ccgaaaatga tctgtgtcaa tggtttcagg accttttatc cacaaaacac
    17641 catctctata agccacctct aatggctgaa aaagagcctt gaagcctgca ctctggcaca
    17701 aatcttccgt aaaagcttct ggataatatg cttctaccaa accagcttca aaagcctccg
    17761 catcgctgac aatagaaaat tgaatcttat tgcccacctt ttcaaactcc gtcgccaaac
    17821 gagccttgaa gagttgatag tccatgagcg gcaagggggt ttcaaaacgg aaggtaaatt
    17881 cccaaagttt actgaccttg tgcaagacta ctttctcaat cgttgcagtc gaaaaagccc
    17941 ctgattgtcg tgcatcaaga ggcattccga tttgttgtag caagagttga aacttatctg
    18001 acatacttat ttcctttgta gttcgttaga aacattttac cataaatgag gtattttttc
    18061 ctgagtcagg aagaaaaaac tctcaggtca tttcctgaga gatctgattt ctatagaaat
    18121 tagtagccca ccaagccgca gcttctgtag gcgcctctaa aaaatccagc cattttcgat
    18181 ccttaacacg acagagggtg acagaaattc ctcccatatc aagactggtc ataaatttac
    18241 ctgtttttat ataggaaagc tgtaaacctt ctagctctag aaattggcaa atgtcattca
    18301 aaaagattcc ttgctcaacc tcagacatag atccaagatt attgaccaga agaatatagt
    18361 cttccccctc cttccagcgg aattttaatt ttaatttgtt cacaatttcg ttggctaact
    18421 gctcagagga ttcaaaacga acggtccgat agccttcttc tccatggata ccgatgccgt
    18481 aagatatttg tccctcctcc aaatcaaaca aaggcagggc agcattgggc aaataggccg
    18541 acttggttgc aaaaccgatg gtcgcaatct ctgttgccag agacagtccc agctgttcca
    18601 attcatctag gctatagcca gtaagggcag cagctcctaa tatcttatga agtagaatgg
    18661 tccctgcaag ccccctatgc cgcatacgga aattattctt agtatcgacc gaaatatcgt
    18721 catgggatac gatgtacttg actgcaattc cctcctgccg agccaattcg atggcttttc
    18781 taaaagagac aaggtctgcc tcaaagtttt ttacaattag aaaaactccc ttacccttat
    18841 ctactgcacg aatggctgcc aatacttctt cagcggttgg gggcgtaaat atttcaccat
    18901 atactgctgc agtcagcata ccctttccga caaatccaat atgtgccggt tcatgccccg
    18961 atccaccacc tgaaataatt ggaactaaat ggtcatcctg cactttctga agcacaatcg
    19021 gaagtccctt cactttcttc actttaggat tggttcgaca gaaaccatcc aaataatctt
    19081 caataattgt tgcctgtcta tttctaataa acaccatata ttaactccta caaaatcaca
    19141 aacgactcgc gaacaagagc caccatttgc ttccaataac tgtgaatctg acaaggtgac
    19201 tgtgtcagtc cttcctttat cagtccaatc caagcattag catgatagag aatcaaaaaa
    19261 tgcttatcct gttgggaaat cattttaccc tcctggagct ggtactcgtt gataattttc
    19321 tccatcaaaa ccataaagta gccttctaaa tagctgacaa aatcattttg ccccttaatc
    19381 tcaaagagtt gcctatagaa agattggtta ctctcgatgt agtacaaaag ctcatccaga
    19441 agcttgattc cactaatata ggtcagattg tcagttacct gctcctgcaa ttctgtctca
    19501 aatatccagt ccagcaactc atacttgtct aaaaaatggt tgtaaaaggt ttgacgacga
    19561 atccctgctt cctgcatgat gtcgacaact gagattttat caaaggattt ttgggatagc
    19621 tgttttttaa aagcctttgc aatccttttc tttgtaatca acgaggttgg catatgtcac
    19681 ttcctttcgc ttcctcttta ttatacccta tcatgctttt ctttggaaca aaagggacac
    19741 attggacaat ctgtcccttc cttttttctt ttggacaatg tagaatgaaa gcgcaaacaa
    19801 aaaaacaaag gagttttctc atgaaaaaaa ttatcaatca acctgaacgt gtcgttgatg
    19861 aaatgttaaa aggacttgtc tttatgcacc aagatcttgt cgatcgtatc gatggatttg
    19921 atgtgattat ccgcaaggct gaaaaaactg gtaaagtcgg catcatctca ggaggtggct
    19981 ctggtcacga accttctcat gcaggctttg tcggcaaggg catgttgtcc gccgctgtat
    20041 gtggcgcagt atttacctca ccaacaccag accaaatctt ggaagccatc aaggctgctg
    20101 acgagggagc tggcgtcttt atggtcatca aaaactactc tggcgacatc atgaactttg
    20161 agatggcgca agaattggcg gaaatggagg gcattgaagt ggacagtgtc gttgtggacg
    20221 atgacatcgc tgtggaaaac agcctctata cccaaggacg tcgtggtgta gcaggtacca
    20281 tccttgtcca caagattctc ggtcacgctg cagaaacggg caaatcgctg gctgagatta
    20341 aggaactggc tgaccgtctc gtcccacaaa tcaagactat cggcttagcc ctatcaggtg
    20401 ctacggtacc agaagtgggc aaaccaggct tcgtccttga agaggatgaa tttgaatacg
    20461 gtgtcggtat ccatggtgaa cctggctata agaaagaaaa actccaacca tctgctaaat
    20521 tggctgaaga attggttgag aaattggcag aaggctttga tattcaagat ggcgagcact
    20581 atggtgtcct tatcaacggt ctcggcgcaa cccctctcat ggaacaatat gtctttgcca
    20641 acgacgttgc tcaattgctg gctaaaaaag gtgtggtcgt tgactacaag aaaatcggta
    20701 actacatgac atcgattgat atggctggac tgtcattgac cttaatcaaa ctagaagacc
    20761 caagctggat tgacgctttg caggcccctg ttgaagtggt agcttggtag gagaaagact
    20821 atggatgcaa aacaagcact gctctggatg gagacattca acaaaaaaat tcaagaagac
    20881 aaagattatt tgagtgagct agattctcca attggagacg gagatcacgg gggcaacatg
    20941 gtgcgaggaa tggctgccgt catgcaggag ctatctgaga aagactatga gactgctgac
    21001 caagtcttta aggtggttgc catgcaactt ctcagcaagg ttggcggtgc ttccggtcct
    21061 ctctacggct ctgcctttat gggtattact aaagccagtc aagctggcgc tgatttggca
    21121 gatacgcttc aagcaggttt ggagatgatc caaaaacgcg gcaaggctga attgggcgag
    21181 aaaaccatgg tagacgtgtg gattcccgtc attgctgccc taagagaaag ccagctgaca
    21241 acggaaatta tccataaagc cgttcaaggt acaaaggata ttgctgcgac caagggacgc
    21301 gcgtcctatg ttggggaaag gtctattgga cacattgatc caggctcttt ctcatctgga
    21361 cttctctttg aagccatgtt ggaggcagga ctatgacaaa ggttggtatc ttactcgtat
    21421 cccattcaaa aaatttggcc cagggaatca tcgacctagt atctgaagtc gcaaaagata
    21481 ttcccatcac ctactgtggc ggactagaag atggtagcat cggtaccagc tttgaaatcg
    21541 tacaagagcg agttgaagca aaccctgctg ataccctcct tgcctttttc gacctaggta
    21601 gcgcccgaat gaacatggaa cttgctgccg attttacaga caaacaaatt cttatccaaa
    21661 ccgtaccagt cgtcgaaggt tgctatactg ccgcagctct cttacaggct ggagctgact
    21721 tggagactat tcttgaacaa ttaaaagaac tgacaatcaa taaataggag gtcattatga
    21781 atctgattgg agaattactt ggaactttca tactagtatt acttggaaac ggtgtggttg
    21841 catcctgcat cctctctaaa accaaggctg aaaatagcgg ctggctgacc atcgtactag
    21901 gatggggcat cgctgtaaca attgccgtct acatatcagg aatttttgga cctgcccacc
    21961 tgaatccagc tgtcactatc gcaatggcat ctatcggctc cctaccatgg gctcaagtcc
    22021 caggcttcct acttgcccaa tttgctggag caatgttggc atccatcatc ctctatctcc
    22081 atttctaccc acattggcag gaaacaaaag atagcggaac aatccttgct actttctcta
    22141 ctggaccagc tcttcgtcac acagcttcaa acttgctcgg cgaagctctt ggtacagctg
    22201 tcttagtcat gggaatcctt gcaattggtc ctaacaatgt cagcgctggc ctcggcccaa
    22261 tcatcgtggg acttatcgta tttgcaatcg gcttctcact aggatcaacg acaggctacg
    22321 cagtcaatcc agctcgtgac ttaggtcctc gtatcatgca tgccatcctt ccaattccaa
    22381 acaagggaga ttctgactgg tcttatagct ggatcccagt tgctggccca attcttggag
    22441 gagtcgcagg agctatcctc tataacctcc tactaaatat gttataaaaa aataggcttt
    22501 tggaaaaagc ccagcgcaac ttatcagagt tcgtatcaac atctcagcgc agtggttgat
    22561 tggcagattt attcgtgttt cacactccaa atctgaccta tacgactgaa gcgaacagag
    22621 ttcgcttcat ctccaacctc aaactatctc ccagacagtt tgagctgtgc gggggtggga
    22681 gtgaaacagt ctggggatag actgtttcag ctcaacaact taaaacgaaa aattgttgac
    22741 gaactctgtt tgacctagtc gagttctttc ccactcccat tttatcaaca aagacttggc
    22801 tattatcaac caagtctttt tctgttattc attttctttt gtaaggattt gcaaggtttc
    22861 aaggagttgg tccacatgga cttctacagt atcacctgtg cccttgattt tcacttcgac
    22921 gatgccatca gctgctttct taccaacagt cacacggatt ggcaagccaa tcaagtcact
    22981 gtcagaaaac ttaacgccga cacgctcatt acggtcgtca gttaatactt catagcctgc
    23041 accaaccaaa cttgcttcga tagactgagt caattccatc gccgcttcat ctttgacatt
    23101 gactggaatc aaatgcacat caaacggtgc caattcttta gggaagttga tcccccaagc
    23161 gtaacggtat tcgccttttg gtgtcttgtt aacaaagagg cgagcgtgtt gttcaagaac
    23221 ggctgacaag agacggctaa caccgattcc gtagcatccc atgataatcg gcatagaacg
    23281 accgttctca tccaagatgt tggcattcat gctgtctgaa tagcgtgtac cgagtttgaa
    23341 gatgtgacca atctcgatac cacgggcaaa gttgagaacc ccgtgtccat ctggagaagg
    23401 ctcgccttcc ttgacttcgc gaatatccac atactcagtc acttggaaat cacgccctgc
    23461 attggcacct gtgtagtgga aaccgtcttc gttggcaccg acaacagcat ttttcacatc
    23521 ttgaaccttg cggtctgcaa taatcttgat gttttctggc aagccaactg gtccaaggga
    23581 accaaaacct gcaccgaaga ttttttcagc atccgctggg cctgctacat caaaaaaatc
    23641 tgctccaagg tggtttttca acttgacatc gttaacttga tcattgccaa caaggagggc
    23701 aacaactggc tcaccgtctg ccataaagag catggttttg atagtttgtt cttccgcaat
    23761 attcaagaag gcggcaactt cgtcgatggt tttagcatct ggtgtagcaa ttttaaccaa
    23821 gtcttcttcg acgacaactg ctgtacttgg tttatattca ctagttgcca tttctaggtt
    23881 ggcagcgtaa cctgattcgc tagagtaggc aatggtgtct tcaccagaca cagaccatgc
    23941 caagagttct tccttgattg cttcaagaac atcctctggg atttcttcaa aagaagcaac
    24001 agacttgtcc aagacaaccc aacggtccag gtcagtacgg tctggtgtaa tagccataaa
    24061 ctcctggcta tccttaccac ccatggcacc accgtcaccg ataatggcct tgaactccaa
    24121 tcctgcacga gtgaagattg cctcgtaagc cgccttgtag tcatcgtagg tctggtccaa
    24181 gctttcatag ctagcgtgga agctgtagcc atctttcatg ataaactcgc gaccacggag
    24241 aagaccgtta cgagggcgtt tttcatcacg gtattttggc tggatttggt agatgttaag
    24301 cggcaactgc ttgtaagact ggaccgcatc acgcgccaat agcgtcaccg tttcttcgtg
    24361 ggttggaccc aagataaagt cagaaccctc acggtttttg agcttgtaga ggtcgtcacc
    24421 ataggtttca taacgacctg actcacgcca aatatccgcg gacaagaggg ctggtgccaa
    24481 aaattcaatg gcatcaatct tatcaagctc ctcacgcatg atattttttg ctttttcaat
    24541 cacacggtta gccaaaggca agtagctgta aataccagca gaaatctgac ggacatagcc
    24601 cgcacgtaac atcaaagcgt ggctaatcac cgacgcatcc gaaggcatct cccgcaaagt
    24661 agggataatc attttagact gtttcataat aagatacaaa gggcgtggaa accaaagcaa
    24721 aaataggaaa tcattgcagt gtgctggcac acaaaatgat ttatcttttt tgcacaggtt
    24781 tcagcccgtg ttcagttcct ttcatagttt tcagaacttc ctgcgtttag cacgcattca
    24841 attcctttcg tatttttcag aacatcctgc gtagcacgca ttcaattcct ttcataaatt
    24901 tcaaattatc ttagaagaag actcttataa tatcattcca agtgactact atcataagaa
    24961 ccaccataac ggctacacct gctagagtga tataagattc cgtctctggt ttgagtggtt
    25021 ttctgcgaat ggcttccaga atattcataa caatcttacc accatccaag gctggaattg
    25081 gaatcaaatt gaagattcca aggttaatgg agagcgcagc cattagcccc aatacagaag
    25141 ccaaaccaaa ttcagccgct tgagaactta ctttataaat agcaaccggt ccccccaact
    25201 gcttaacatc aaagtttgca attaggttct tcaaagctgt tacaacccta agagctgtcg
    25261 ctcccgcttc ttggaaacca ccgataattt tatcaacgaa accagttttc aaaatcggtg
    25321 aaataccaat tcgataggcc ccatctactt gttcagcagt aacggagaca tgacggtttt
    25381 tcccatcatg ctcaacaacc aaatcaaagc ttggggctgt tgttgcatct gtcgctgctt
    25441 tgctaataat cgttgcaact tctgtgtagc tgtctgtcgt gttcccattg accgaaagaa
    25501 tcttgtcccc tgtgacaaca cctgccgcct gcaaagcacc accttcagta atacttactg
    25561 cattgcttga tgggttggca accccgcctt gcatgaagaa caaaataata aatactagaa
    25621 tccctaaaat aaagttattc atgggacccg caaagttggt catcaaccgt ccccagactg
    25681 tcgcattttg atactgaaca tcaagtggag caatccgaac ttctgttcca tcttcctcta
    25741 caatcgtggc gtcgtgatca accctatagg tcttgctttc ttccaagacc aagcctgtga
    25801 tttccaattt ttcctcgaag tcaaaactgg ttacattcat tggcaaactg agactatcca
    25861 gttgcttacc agacaaatta atccgcgtca caacaccagc ttcattcagg ctgaggctgg
    25921 caggactacc tgtcttaatc tctgtcttat cttcacccca tccagccatt cgaacatagc
    25981 cacctagggg aaggatacgg atggtgtaaa gtgtcccatc cttacctgta tgagcgaaaa
    26041 ttttgggacc catcccaatc gcaaattccc tcacaaggat accagctttc ttggcaaagt
    26101 agaaatgacc aaattcatgg acaaccacaa tcacaccaaa tataaatata aatgctaaaa
    26161 ttcccttcat agtacctcct taaaataatc caaagaagtg catgattgga aagacaaaaa
    26221 tcataccgtc aaaacgatcc aggataccac cgtgtcctgg aataattttt ccagaatcct
    26281 tcacaccaaa atggcgttta atagcacttt ctactaaatc tccgaattgt gagaatatcg
    26341 agaaaatcac aactaacaac aacatcatgc caaatgaata gcccgccaac aaagacttat
    26401 cgacaatcaa gaaaatgata gcaactacca ccgcagaaag aataccgcct gcaaagcctt
    26461 caaccgtttt attcggtgaa accttcggca ataattttct ccgaccaatc tgacgaccga
    26521 ttaagtaggc accaatgtct gttgcccaga ctaaacagag ggcaaagaag actttattga
    26581 gcccatccat acgagccagt atcaaactat gaaagccgat accaacatag aaacttgatg
    26641 caattggaaa gactacatct gaatagttgt aatgaccgat attaaaaacc gtcgaaccaa
    26701 gcagtaaaaa tactacaata gcgtaggctg tgtaatttcc atccgtcggt aaaaatgtca
    26761 gataattctg gagcggaaga gccaagacta aactggccaa catagctaag acaccctcga
    26821 tagaatttgg tgctaggcga tgcattttaa tcaattcagc cgtagcaatg atggctaaca
    26881 ggcctacaaa aaattgaaat gccatcccac cagccaacaa aaagggaatg aaaatagcta
    26941 gagcaatgcc gccaaatatc actcgtttct gtaaatcgtt tgtcatacct tctccttata
    27001 caccgccaaa acgtctgtgg cgacggttgt attctttaat cgctaattta agtgcttctc
    27061 catcaaaatc aggccaagca atatctgtaa agtacagctc gctgtaggct gtttgccacg
    27121 gcaggaagtt gctaagacga agttcaccac ttgtacggat aactagatcg ggatcgcgta
    27181 acgttggtga taaggttcct gtatagaggt aatccgctat taatttctca tcaatatccc
    27241 caggattgaa cttggcatcc aagacatctt gcgcaatagc cttgactgcg cgagtcacct
    27301 catcacgacc gccatagtta agagcgaaat tgagaatcaa accagtgtta ctctttgtct
    27361 tttgttcggc tttataaagc gcattgagag tcgggacagg aagttttgaa tggtcaccaa
    27421 tcatctgaat tttgacatta ttggcatgga gttcaggaac atacttatca taaaactcca
    27481 caggtagatt catgataaac ttcacttctt tttccggtcg agaccagttt tctgtagaaa
    27541 aggcatagac agttaacacc tttactccca aatcagaagc cgtcttggta accttttgca
    27601 gtgcatccat accagcctta tgccccataa tacgtggctg catccgcttt ttcgcccaac
    27661 ggccattgcc atccataatc acagcgatat gcttagggac ttcaattgca gtttcaatgc
    27721 tttctttctt tttaaaatta aatttaaaca tggtattttc cttattgtat aatcgtttca
    27781 ttataccata tttttaccta ggatagcaaa aatcaggcag ggctaaaaca agagaaaacc
    27841 aaggtttccc tcggtttttc atccttattc ttcaattgca gcttctggag ttgcttctgt
    27901 cgtttcaact gccacttctt caacaactgc cgatgtagta tttgaacttg ctacacgatt
    27961 acgaatagca ccacgttcaa atgtcaagta aacaccatca acatcgagaa caaccttctt
    28021 atcatcaatt tcatcgacaa taccaaatag cccaccaatg gtcacaattt catcaccttt
    28081 tttgatttga tttagtgctt cttgacgttg tttttgttgt ttacgttgcg aatagaacat
    28141 aaaaccaatc atggcaacca tgacaagcgg caaaaataaa ccttccattt gtttacctct
    28201 tttattgttt gataagcatg attatatcaa attctggaca agaaagcaaa gttcgaccaa
    28261 acagaaaaag accgaacttt cgttcagtct tcgcacatta ttttgcgctc catacacttt
    28321 caaggatatt ggtctgttca cgacctggtc caactgagaa ggttgagata cgcacgccga
    28381 ccaattcgct gatacgacga acatagttgc gagccgcttc tggcaattca tccaggctac
    28441 gtacacctgt gatgtcttca gaccaacctg gcatttcttc gtagattggt ttgcaacgtt
    28501 tgagttgctc caaacttgca gggtagtggt caatacgctc accatccaag tcataagcca
    28561 cgcagatttt caaggtctca agacctgaca agacgtcaat cgagttgagg gacaagttgg
    28621 taatacctga cacacggcga ctatggcgca tcaccactga gtcaaaccaa ccgacacggc
    28681 gtggacggcc agttgtcgta ccgtattcct taccgatttc gcggatacgg tctccgattt
    28741 catcgtgcaa ttcagtcggg aatggtccgt caccaacacg gctagtgtag gccttacata
    28801 caccaacaac cttatcaatc ttgcttgggc cgacaccgct accgatcgtc acaccaccag
    28861 caactgggtt tgaagaagta acgaatggat aggtaccttg gtcaatgtcc aacataaccc
    28921 cttgcgcacc ttcaaataag acacgcttgc cttgatcgag ggcatcgttc aagataacag
    28981 aggtatctgt tacatacttt ttgatttctt gaccataagc gtagtattct tcaaagattt
    29041 cgtcaaactc aatcggagtt gactcataca ttttctcaaa caaacggttt ttctcagcca
    29101 agtttgttct caaacgctcc gcaaaaatct ccttgtccaa gaggtctgca atacggatac
    29161 caacacgcgc agccttgtcc atgtaggctg gaccgatacc cttgttggtt gtaccaatct
    29221 tgttctcacc tttagactct tcttgcaact ggtccaattt gatgtggtaa ggcaagatga
    29281 catgtgcgcg gtctgaaatc cgcaaattat ctgttgtcac acctgaatca tggagatagt
    29341 tgatttcctt caccaaagat tttggattga caaccacacc attaccgatt acagaaatct
    29401 tttctgggaa gaagattcct gacggaatca agtgcaattt atacttcgtg ccatcgataa
    29461 cgatagtgtg tccagcgtta tcaccgcctt gataacgtgc gattacttca gcattagcag
    29521 acaagaagtc tgtaatttta cccttacctt cgtcgcccca ctgggttcct acaacaacta
    29581 ctgatgtcat attcactctt tctctgaact ggctaaccag cccagccttt cttctacttc
    29641 tggcaggaat ctcacctgca agtttcgttt tacacactat tctatcaaaa aacgaacatt
    29701 ttttcaagaa attccaatat tttcgtttat atcagatgtt gtttcttgtt acattatttt
    29761 caatctcaaa atacgaacaa atgcttatcc tgaacatttt taaaattgtt tttgacggga
    29821 attcccgaag cctcccaatc ctgtcctctt atcaacttca ttttttcttt caaaacgtag
    29881 cagaaatttg tatttgctct ccaatctaga taaaattgga ataagacttt gacagaaata
    29941 taaaggactt agatatgtta caaaaattat caccaaacag ccccattctt caggctactt
    30001 ttggaattga gcgcgaatca cttcgcatca attcaaacca cagagttgca caaactcccc
    30061 atcctcataa actgggttct cgtagcttcc acccctatat ccagacagac tacagcgagc
    30121 cacagttaga gttgattaca ccaatcgctc agtcgactaa ggaagcgcgt cgcctactgg
    30181 gagccattac agatgttgct gcacgttcta tggataagca agaatacctc tggcccctat
    30241 ccatgccacc tgtgatttca gaagaagaaa tccaaattgc tcaactagat agcgactatg
    30301 agtaccaata tcgtgtcggt ttgggggaac gctatggcaa gctcgtccag tctatgtctg
    30361 gcatccatta taattttgaa ttaggaaaag acttaaccca acaacttttt gaattaagcg
    30421 aggaaacaga ttttatcgca ttcaaaaata ccctctacct caaattagca caaaacttcc
    30481 tcaactatcg ttggctctta acctacctat atggagcaag tagcctagcc gaaaaaggat
    30541 tcctaaccac ggaagtcggt tgcgtccgtt ccattcgtaa ttccaagtac ggctatgtca
    30601 actccgataa tgttcatatt tccttttctt ctctccaaca gtacgtggcc gacatcgaac
    30661 aagctgtcca atctggtcaa ctatccgctg agaaggaatt ttactcttcc gtccgactac
    30721 gtggagcaaa gactagccgt gactacctca gcaaggggat ttcttattta gaattccggt
    30781 ccttcgacct gaacccctat gacccgcttg ctattagtca agaaaccctt gatacagtcc
    30841 acctctttat cttatctctt ctttggctag accaactgac agatgttgat aacaccctag
    30901 caaaagcaga taaacttaac aatctcatcg ccctcagtca tccccacaca cctctaccta
    30961 acgatgccga tgccacgcca atcttgacgg ccatgaaagc catagttcta cactttggac
    31021 tggatgacta ctatggccaa ctcattgcac atgcggaagc agcccttcaa gaccctcgtc
    31081 tgaccctttc tggaaaaata gcagagcagg ttgaagatgg atctctagaa aagtttggtc
    31141 agcaacaggg acaagtcttt catgactatg cttggacagc cccttacgct ctcaagggct
    31201 atgaaaacat ggaactctcc acccagatga ttctctttga cgccattcag ctgggcttga
    31261 atgtggagat tttagatgaa gaagaccagt ttctcaaact ctggcatggt gaccatgtcg
    31321 agtacatcaa aaatggcaac atgacctcca aggacaatta cgtcattcct ctcgccatgg
    31381 ccaacaaggt cgtgaccaag aaaatcttgg accaggctgg ttttccagta cctgcaggag
    31441 ctgaatttgc aaacaagaca gatgccctgc ggtattacgg acaggtaacc agctctgcta
    31501 ttgtagtcaa accaaaatct accaacttcg gccttggcat ctctatcttc caggagccag
    31561 ccagccttgc agactatgaa aaagccctgg acatcgcctt ttcggaagat agccatgtac
    31621 tagtggagga attcgtggcg ggaaccgagt accgtttctt catccttgat ggcaagtgcg
    31681 aggctgttct gctccgcgta gcggccaatg tcgtggggga cggtagctca accatccgtg
    31741 aattagtaga gcaaaaaaac caagatccac tgcgagggcg tgaccaccgt tcaccgctgg
    31801 agatcattaa cttgggcgat atcgaactgc ttatgttaga acagcagggc tacacacctg
    31861 atacggtctt gccagaaggc gtccaagcct ttctgcgtgg caattccaac atctccaccg
    31921 gtggcgactc cattgatatg accgaccaga tggacgagtc ctacaagcaa ctggctgccg
    31981 ctatggcgac tgctatggga gcttgggcct gcggtgtaga tctgattatc cccgaccgca
    32041 ccaagccagc cagcaaggaa gatccaaact gcacctgcat cgaactcaac ttcaaccctg
    32101 ccatgtacct gcacacctat acttacgcag gacctggaca gagcattacg ccgaagattt
    32161 tgaaaaaatt atttccagag ctatagtttc ccattttcct tactttgtta gtacttacct
    32221 caaaggttcg tggaactttt gaaggccgga gatagagcaa agcacgttcg cctcaatagc
    32281 tgcaggttgc aagaacattc taggttggaa ataaggcttg cctcgcaagt cacttctgta
    32341 tagtacggca aagcgagttc aaaaaaatca gtggattgtt tgaagcggga aagccagaaa
    32401 cggagttcct cttgcgccga agtaaaaaaa gtcaacaaaa ggactatata tctgctttgc
    32461 ccttttgttc cttcacaaaa actcccaact aatgttaaac aaaatgaata tggcaccaag
    32521 aaaatcattt atatctcggt gctttttttg tgaaccaatt cccatcactc aaccgctttg
    32581 ttcgtttttt gtttcgtttt ccaatttatt tttactattt catttgaatt tttaaaaata
    32641 tccgtattat atctaaaaaa gtattccaaa cgactcattt tctgttaaac tatatgtata
    32701 taacaactgc agacgttttt atgacgtcca tatataacaa aaaggagttt tatatgaaga
    32761 ttagaaaccg ttctctcttc tataccgtag gttctgtagc ggtaacagcc ggactcttgc
    32821 ttagtcttgc tacttcgccc ataccatctg tgcacgctac tgaagtggcg atagagaatt
    32881 atccgtcact tgcaataacc aagtcggaag tcacgataca aggctatctt attgcaccac
    32941 ttaatagtag cggaactgct tttgacgcca ctaacaaaac aaatctagcc cttggtgcaa
    33001 gcatggatac tgcggccgcc gacactatcc ctattcaact aaaagaacct cttcgtagcc
    33061 aattcaacct cgttgatcat cccgaactag tcggaaaatt ggttcgcatc acaggaacta
    33121 gcgatacata catgaagcga gctgggatca agccagctac agcgattgaa attgtagatt
    33181 catcttctac taatgttcag ccaccaacaa gtgaaaatac agctaccaaa ccaagtgacc
    33241 ttgtttctat accgattgct actgttcgtt ccggagcaca aggaacagag tacacagttt
    33301 ctggtaaaat tattagccta gtaaacggtt ggggaggaaa tggtttttac ctccagggtt
    33361 ctgacggtgc tggtatctat atctacccag gggctgcctt gggctatcag cctggtgata
    33421 cagtccaatt aacaggaaca ttgggtgagt ataaaggcga actccaacta accacagtta
    33481 gcaaccacaa ggctatctct gagaatttca acactcctat tacagaaaca aacatcgctc
    33541 agttagcaac gcaagcacag gcaacactag tttctctaaa aaacttgact gtcggagata
    33601 ttcaaagcga tagctatcaa aattctacct ttaccgtaac tgactccgaa ggacaaactg
    33661 ttgatgtacg cttagatagc cgaacaggca tcaaaacggc ggatcttttg aaccggatca
    33721 acaagggaga taagattaat ctaaccgcta ttttatccac ctataacgga aaaatacaat
    33781 taaaaccatt tgacctctct cattttgaag tcattgaaaa ggcaacgacg gaagcagaga
    33841 caggaaagac cgaagctgta acagtcggtc gcattcaagg tgcaagtcac caatcacctc
    33901 taaccaatca atctgttatg cttaaaaatg tcgtagtaac ctacgttacc tctgccaata
    33961 acttctacgt gcaagatgtc acaccagatg gagacgtcaa aacatctgac ggtattaata
    34021 tttttactga caaattaaaa acaaatgtca aggtaggaga tcttgtcact gtcgcaggac
    34081 gagtagaaga ataccagggc agagggtatg ctgaacgtga caaaacagac ttaaccatca
    34141 cacaaattcg agctactgaa gtaactgtgg atgggactgc acctgtacca tctcctatag
    34201 tccttggtct tgatcggagc atcccagcag atattattga caacgacggt ttggctcaat
    34261 ttgatccaga acaagatgcg ctcgatttct gggaatccgt tgaaggcatg gtggttgccg
    34321 ttgatgatgc aaaaatcctt ggcccactaa aaaacaagga aatctatgtc actccagcca
    34381 ctagtcaact tcctttaaat aacgttggag gcgtcaacct tcgccctgaa gggaataata
    34441 ccaatatcat tccacttctt ttgaaaaatg gaaaacagat tgtcaaatca ggagactact
    34501 tcaccggtcg tatcgctgga ccagtcacct actcttacac caattataaa gtctatgtag
    34561 atgatagcac ccttccaacc ttgcacgaag gagctacaaa accagaaaca acaaccatta
    34621 tcccaaatga tgacaagttg actatcgctt cttataacat tgaaaacttc tctgctaata
    34681 gtaagtcaac atcagacgct aaagtccaac gcattgccaa atcctttgtt tcagacctac
    34741 attctccaga tattatcgga ttgattgaag tgcaggacaa caacggtgct acaaatgacg
    34801 gcacaactga tgctagtaag agtgctgaac gcctgattgc agccattcaa gcagccggcg
    34861 gaccaaccta tacctatgtg gatattgctc ctgaaaacaa caaagacggc ggacaagagg
    34921 gaggcaatat tcgcgtcggc ttcctctaca actcaaaacg tgtcagccta tctgacaaac
    34981 caatcggtac cgcaacacag gcagttgcat gggaaaatgg cgaactcaat ctcagcctgg
    35041 gtcgaatcga cccaaccaac cctgcttggg cagctgtccg caaaaccctt gcagctgaat
    35101 tcgtcttcaa aggcgagaaa gtcgttgttc ttgccaacca tctcaactca aaacgcggtg
    35161 acaatggtct ctacggaaaa atccaacctg tcagcttcaa gtccgaagaa aaacgccaca
    35221 tactagcaca aattatcgct gacttcacaa aagcaggctt agctcaaaat ccaaatgcta
    35281 atatcgttat gctaggcgac ttcaatgact atgaatttac taaaaccata gaaattttag
    35341 aaacaggagg aatggctaac ctcgttagtc gtcacgatgc atccgatcgc ttctcttact
    35401 tctataacgg aaacaatcag tctcttgaca atatgctagt atcaactaac ttgttggacc
    35461 gctatgcctt tgatatggtc catgtcaatt cagcctttat ggaagaacat ggcagagctt
    35521 ctgaccacga tccgctattg gtacaactgg atgtgacaaa ggcacaagaa ccaactcaac
    35581 cagaaccaag cgacaagcag acagatgact caggaacagt caataatagt gatgacaatg
    35641 gtacgaccaa caataacaag ccaacaaatc tttcaacttc taatcaaaca gctgtaaatg
    35701 ctaatgaccg ttctggcgct acagacaagg gacaaacaac cgtgacccct actgccaaca
    35761 acagtcaaaa gaaaatcctt ccaaagacag gaggagaaac aagctttgta cttatcacaa
    35821 tcggtctcgt attcttgatc gcctgtcttg tcaaaaaaca aaaagaatcc taatcatttt
    35881 ttgagcttga aagcatgact ttcaggctca tttttctact gctccacctc cacttatgct
    35941 ataattaaag ttatggataa aattattaaa acactatcaa aaagcgggca tttccgtgcc
    36001 tttgtgctag atagcacaga aaccgtgaaa acagcccaag aaaaacacaa caccatggcg
    36061 tcgtccaccg ttgctctggg tcgcaccctc attgccaatc agatcttggc tgccaatgaa
    36121 aaaggcgaca ccaagatcac cctgaaaatc ttggccagcg gtgctgttgg ggctatcatc
    36181 tccgttgcca ataccaaagg tcaggtcaag ggctacattc aaaatccaga cttggattac
    36241 aaacgaacag cgactggcga agtcatcgtt gggcctcttg tagggaacgg acaattcctg
    36301 gttatcacag actacggaac aggtcaccct tacaactcca tgacaccctt aatctctggt
    36361 gaaataggtg aagattttgc ctatttcttg acagacagcc agcaaacacc atctgcggtg
    36421 gggctcaatg tattgctgga cgaggaagat aaggtccagg tagctggcgg attcttgttg
    36481 caagttttac caggtgcgac cgaggctgaa attgcccgtt tcgagaaacg catccaagaa
    36541 atgcctgcca tttcaagctt gctagcttct gaaaaccaca tagaagctct gctatccgcc
    36601 atttatggcg acgacgactt caaacgcctg tcagaagagg aaatcggctt tgtctgcgac
    36661 tgctctaaag accgcttcct agatgctctg gctagtctgc caaaaacgga cctgcaagag
    36721 atgaaggaag aagacaaggg tgtggacatt acctgccaat tctgccagac ccattaccac
    36781 tttgacgaaa acgatttgga ggaactcatc aatggctaat ctcaataccc ctttcatgat
    36841 tggtgatgtg gaaatcccca atcgatgcgt gctggcccca atggctggcg tgaccaactc
    36901 ggccttccgt accattgcaa aagaaatggg cgctggtctg gtcgtaatgg aaatgatttc
    36961 tgaaaaaggc cttctctaca ataatgagaa gaccctccac atgctccata tcgacgacaa
    37021 cgaataccct atgtccatcc aacttttcgg tggtgatgcc gaagggttga aacgggccgc
    37081 cgacttcatc cagaaaaaca ccaaggccaa catcgtagat atcaacatgg gctgccctgt
    37141 caacaaggtc atcaagaacg aggctggtgc caagtggctc aaggatcccg acaagatcta
    37201 ccacatcatc aaggaagtga cctcggtcct cgacattcct ctgaccgtta agatgcggac
    37261 cggttggaac aataccgacc tagcggtcga aaacgccctg gccgcagaaa gtgccggtgt
    37321 gtctgcccta gccatgcacg gacggacccg cgagcagatg tacacaggaa ccgttgacct
    37381 ggaaaccctc accaaggtag ctggcagcct gaccaagatt cccttcatcg caaacggcga
    37441 catccgcact gtagaagatg cccgccagcg aatcgaagaa gtcggagctg atgccgtcat
    37501 ggtcggacgg actgctatgg gaaatccata catcttcaac caaatcaatc actatcttga
    37561 aacaggagaa gtcctacccg acctctcctt tgacgacaaa ctcaatgtcg ccttcgacca
    37621 cctgacccga ttgaccaatc ttaagggtga gtccattgcc gtacgtgaat tccgtggtct
    37681 tgcccctcac tacctccgtg gttcagcagg cgctgccaaa atccgtggtg ctgttgcccg
    37741 agcagagact atcgagcagg tccaagaact ctttgaccaa gcacgagaag cctatcagga
    37801 acggattgct aaataagata aactggcagg ttaaagctcg ccaacaatga aatagaaaaa
    37861 cgcataaagc caagatgata acttgatttt atgcgttttt tctatagatt agaacctcaa
    37921 ctcttatttt tagtaacgat agtcggaatc ataatgaatg tagatattat tgttaccgtc
    37981 gtattcatag gttaatttcc aacggttaat aatacgaata gaatttttat ctggtaacca
    38041 tcttagcaag gctaaaagtg tgaaatctgg ttctttgcta tagagaacca tttctgcttc
    38101 atcatttccg atgaaaacat ttaaacttgg atgaacatgg atagtatgct gtctaaataa
    38161 atactgtttc attccaattc ctcctcatcc gtgtaataga tagttaccat gttgcctgaa
    38221 atctcatatt ccacacccca aaatgtatct accaagagtc cgcctgcttg agaaagtttt
    38281 acctgacagc agattgcggt atggtctgga aagataacta atatcttgtt tttgccatca
    38341 taaatagagt gtaatctttc tgaaatctta atttcaaaat tatttaattg aataatttgc
    38401 atatttctcc tagtttattt actatggacg taggtaattt ccatacttgt catatgtacc
    38461 tattcgttga ccatttcgat taaatagctt ccaataactt cctccatgtg atcctcctcc
    38521 agaattaaca gaccaatctc tagtcacata agttcctctt ggtccgaaat atgtaccaga
    38581 tctaccagat gccgctgttc cgaatctatt tgaataacca gaaaggttaa tataggataa
    38641 atctccacca ccttctaaat tcgaaaaatg cttcgatttt gtttcaacag gtgtttcgat
    38701 tcgactagca gcttgagcag acactgctgg tggagcaact gccatcaaca caacaagcaa
    38761 gttaataaaa caaacgatcg tttttttcaa aagattcttt ttcataagaa ccacctcctt
    38821 tt
//
LOCUS       DASGCC010000002        36431 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.002, whole genome shotgun sequence.
ACCESSION   DASGCC010000002 DASGCC010000000
VERSION     DASGCC010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 36431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36431
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.002"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            175..1428
                     /locus_tag="U1404_000036"
     CDS             175..1428
                     /locus_tag="U1404_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM5347032.1"
                     /translation="MKLQEGVDLHFIDTDQFTTNRIRIRFAAEMSEATVAGRVLVANI
                     FEMGNQEFQTAQAVRRRLAELYGAQFSTSVSKRGRVHCVDVTISYVSPRHLPENEDIT
                     VEILDFLYTCIFRPLKKGRGFDSQIFEVEKTNLINFLQSEIEDNFYHADVEMSKLFYK
                     DPSLQIPRVGRLDLVEKETAESTFQIYRNMLRMDKIDIFVLGKVDREQVKRKLEDFGF
                     TYRNPKLELEYNQEYSNITQEKIERKQARQSILELAYHLQVVYNDVNYPALMVFNGLL
                     GAFSHSKLFMNVREKESLAYTIGSQVSIFSGMLKVYAGISHENRLRVMKLISKQLLDL
                     KCGKFTEEELELTKNMLIHSATLAQDRQNNLIEQVYNQVTLGNRNLSWLDWIEAIKSV
                     SIEDVIRVGQMINLQAVYFMEGTEE"
     gene            1425..2708
                     /locus_tag="U1404_000037"
     CDS             1425..2708
                     /locus_tag="U1404_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM5347033.1"
                     /translation="MKLVEKKYPYMKESVFYGKVDNGLTVILLPKVDFHETYGILTTN
                     FGGIHTRFTLANGKSVVYPAGIAHFLEHKLFETENEEDIMNEFAKLGASANAYTSFRQ
                     TSYLFSTTQKVLESLSLLQSFVREPYFTEDNVEREQGIIEQEIEMYQDDADYRLFTGI
                     LSSLYPESPLAYDIAGTVESIAAITADDLHENFEVFYHPSNMNLFVIGNFDLEAVWKQ
                     ISSYQVAQMDNPAQSFELAGVQKLPIQEHLSEQFEVSTPKLAVGLRGNDEVDKETIQK
                     YRLSLQFLFAMLFGWTSKRYQQLYEQGKIDSSFQFQLEVTPEYHYLIISGDTQEPITL
                     SSILMKALRKFEDDADVTEDHLQLLKNEMYGDFIRSLNSLEFTASHFVSQYSEYENVF
                     DIPQMIQSLQLDDIREAGRRFIDHCDMTDFTIFPK"
     gene            2790..3647
                     /locus_tag="U1404_000038"
     CDS             2790..3647
                     /locus_tag="U1404_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5347034.1"
                     /translation="MRQKSIGEVLRTAREGRSWTFVDLQRITKIQAKYLQALEYNDFD
                     FIANSDDVQSILKAYAEALELDADVLLDAYETNSLVKYYEDGEEELRSSELKRSYKVR
                     KRKKNSYLPLIYLLLATGLIIIFVTYIVHSRLQNRASITPTTTSYSIVEQSVSEASSG
                     TETSSTEQAQSNSTSSSSSVTENVTISGSGSNIVATLKTVTYPVEVTVTAKNTTSWIS
                     LSDTLLEGGVTLTPDNPTVTTTVEEGVTSTTLILGVVKGVEVTVGGQKLNLSALTADT
                     GSITINFEQ"
     gene            3657..4196
                     /gene="pgsA"
                     /locus_tag="U1404_000039"
     CDS             3657..4196
                     /gene="pgsA"
                     /locus_tag="U1404_000039"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEM5347035.1"
                     /translation="MKKENIPNALTIGRILVIPIFILLLTVWDSTISHVLAALIFALA
                     SITDYLDGYLARKWQVVTNFGKFADPMADKILVMTAFIMLVELGFAPAWVVAIIICRE
                     LAVTGLRLLLVENGGTVLAAAMPGKIKTFSQMFAVIFLLLHWNAVGQITLYIALFFTL
                     YSGYDYFKGASFLFKDTFK"
     gene            4193..5029
                     /locus_tag="U1404_000040"
     CDS             4193..5029
                     /locus_tag="U1404_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM5347036.1"
                     /translation="MMNIIEVKNLKYKYNQEDERYTLNDVSFHVKQGEWLSIIGHNGS
                     GKSTTVRLIDGLLEAESGDIYIDGDALTIDNVWDKRRLIGMVFQNPDNQFVGATVEDD
                     VAFGLENQGIPLEEMRSRVDEALELVGMTDFKTREPARLSGGQKQRVAIAGVVALRPK
                     IIILDEATSMLDPEGRLDLIKIVREIKERHGMTVISITHDLDEVALSDRVIVMKNGQV
                     ESISTPNELFMREDLVDLDLDRPFTTELASSLRQTGLDLPLRYFTEEELEETLWELFS
                     KK"
     gene            5005..5847
                     /locus_tag="U1404_000041"
     CDS             5005..5847
                     /locus_tag="U1404_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM5347037.1"
                     /translation="MGIVLQEVSYTYQAGTPFEGRALFGVDLEIVDGSYTALIGHTGS
                     GKSTILQLLNGLNVPTEGRVVIDDVVITATSENKDIKQVRKKVGLVFQFPESQVFDET
                     VLKDVAFGPQNFGVSQEEAETIAREKLALVGIDESLFERSPFELSGGQMRRVAIAGIL
                     AMEPSILVLDEPTAGLDPAGRQELMDIFKKLHESGMTIVLVTHLMDDVANYADFVYIM
                     EKGKLVRSGKPVDIFQEVDFLESIQLGVPKITKFAANLERRGFVFERLPITIEEFTGM
                     VTHG"
     gene            5840..6634
                     /locus_tag="U1404_000042"
     CDS             5840..6634
                     /locus_tag="U1404_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5347038.1"
                     /translation="MDKLILGRYIPGDSIIHRLDPRSKLLAMFGFLLMIFWANNLVTN
                     ALLIAFVLGMVVLSRIRLSFFINGLKPMIGIILFTTFFQVFFTPGATILWEFWIFKLS
                     VEGLQQAAIIFVRFVLIIFFSTLLTLTTTPLSLADGIESGLAPLKKFKVPVHEIGLML
                     SMSLRFVPTLMDDTTRIMNAQRARGVDFNEGNLIQKVKSVIPILIPLFASSFKRADAL
                     ATAMEARGYQGGDGRTKYRILEWKLADTLAILVMLALAGLLFILKK"
     gene            6766..7320
                     /locus_tag="U1404_000043"
     CDS             6766..7320
                     /locus_tag="U1404_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009911037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5347039.1"
                     /translation="MNITLKKNLKTTIAGLVAGISLLTAGVVSAETYTVKSGDTLSEI
                     AETYNTTVEKLAEQNKITNLDFIHVGQVIELGDVTVKAVESSIEQTQSTSTSTATVTT
                     STYSSNLSAEDAAAKEWIAMKESSGSYDARNGIYIGRYQLTNTYLNGDYSPENQERVA
                     DAYVASRYGSWSAAKAFWLANGWY"
     gene            complement(7777..8649)
                     /gene="sdaAA"
                     /locus_tag="U1404_000044"
     CDS             complement(7777..8649)
                     /gene="sdaAA"
                     /locus_tag="U1404_000044"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEM5347040.1"
                     /translation="MFYTIEELVQQADNFSANVAELMIATEIELTGRSREEILTIMSR
                     NLTVMKASIVDGLTESKSVSGLTGGDAAKLDAYMKSGKTLSDSAVLSAARNAMAVNEL
                     NAKMGLVCATPTAGSAGCLPAVLGVAIEKLNLTEEQQLDFLFTAGAFGLVIANNASIS
                     GAEGGCQAEVGSASAMSAAALTLAAGGTPYQASQAICFVIKNMLGLICDPVAGLVEVP
                     CVKRNAMGASYAMVAADMALAGIESKIPVDEVINAMYQVGAALPTAFRETAEGGLAAT
                     PTGRRLTQEIFGED"
     gene            complement(8662..9333)
                     /gene="sdaAB"
                     /locus_tag="U1404_000045"
     CDS             complement(8662..9333)
                     /gene="sdaAB"
                     /locus_tag="U1404_000045"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HEM5347041.1"
                     /translation="MTNLKFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFGDEPT
                     EVEFQLYNSFAKTYRGHGTDVALVAGILGMDTDDPRIPDSLDIARERGIKVYWRVNKD
                     SNTPHPNTTRIIIKNDKKSISATGVSIGGGNIQVTELNGFSVNLNMNTPTIIIVHQDV
                     PGMIAKVTDVLSKYDINIAQMNVTREKAGEKAIMIIEVDARQCENSIAEIEKIPHLHN
                     VTFFN"
     gene            9548..10672
                     /gene="mnmA"
                     /locus_tag="U1404_000046"
     CDS             9548..10672
                     /gene="mnmA"
                     /locus_tag="U1404_000046"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEM5347042.1"
                     /translation="MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD
                     TDENGFCTATEDYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDV
                     MCNKEIKFKAFLDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQL
                     SQEQLQKTMFPLGHLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPA
                     QPGRMMTVDGRDMGEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVG
                     QGFYHESLMSTSLQASQVHFTRDMPEEFKLECTAKFRYRQPDSQVTVKVKGDKAEVIF
                     AEPQRAITPGQAVVFYDGQECLGGGMIDMAYKDGEACQYI"
     gene            complement(10715..11104)
                     /locus_tag="U1404_000047"
     CDS             complement(10715..11104)
                     /locus_tag="U1404_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000106206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM5347043.1"
                     /translation="MSTNLEIFNAYNNALIAGDFAALFETMADDIIWHQPGNHSTSGA
                     KIGKEVLGAHLATFAEKTNGTFKVVTNWVSDNDTLVAANVTFLGTRTDGEELNMNGID
                     LFRMEDGKIKEVWLFSADQTAEDAFWG"
     gene            11230..11556
                     /locus_tag="U1404_000048"
     CDS             11230..11556
                     /locus_tag="U1404_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5347044.1"
                     /translation="MKKVSEYGICPFATTQKVLTGKWGLVIIYQLSTGTKRFNELQRL
                     IPGITQTMLTRHLRQLEEDRIISRTVYAEVPPRVEYSLTEMGEKFRSVLDAVEAWGLE
                     YIETLT"
     gene            11698..12159
                     /locus_tag="U1404_000049"
     CDS             11698..12159
                     /locus_tag="U1404_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM5347045.1"
                     /translation="MDFRTKVDNQIFGVRATALLIKDGKIFLTKDSKGRYYTIGGAVE
                     VNEVAADAVVREVKEELGIDSHVNQLAFVVENKFTQEGIHFHNIEFHFIVEPIGEIPE
                     EMIEDNLKQACEWIDVDKLVNLDVVPVFLAEKLPNWSGQVTHIMNMKEKTT"
     gene            12156..14072
                     /gene="mnmG"
                     /locus_tag="U1404_000050"
     CDS             12156..14072
                     /gene="mnmG"
                     /locus_tag="U1404_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEM5347046.1"
                     /translation="MTHTFAENYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMV
                     AFMPCNPSIGGSAKGIVVREIDALGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQAD
                     KAEYAAEMKRTVERQENLTLRQTMIDEILVEDGKVIGVRTATNQKFSAKAVVVTTGTA
                     LRGEIIIGDLKYSSGPNNSLASITLADNLKELGLEIGRFKTGTPPRVNARTINYEETE
                     IQPDDEKPNHFSFLSKDEDYLQDQIPCWLTYTNATSHEIINSNLHRAPMFSGIVKGIG
                     PRYCPSIEDKIVRFADKERHQLFLEPEGRNTDEIYVQGLSTSLPEDVQQDLIHSIKGL
                     ENAQMMRTGYAIEYDMVMPHQLRATLETKKISGLFTAGQTNGTSGYEEAAGQGIVAGI
                     NAALKVQGKPELILKRSDGYIGVMIDDLVTKGTVEPYRLLTSRAEYRLILRHDNADMR
                     LTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLESIKLKPIKETNEKVVAMGFKPLTD
                     ALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIELIETEVKYEGYIAKALDQVEKMK
                     RMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQASRISGVNPADISILMVYLEG
                     RSRSISKNKSKDSH"
     gene            14179..16140
                     /locus_tag="U1404_000051"
     CDS             14179..16140
                     /locus_tag="U1404_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEM5347047.1"
                     /translation="MKRFRFSTIHFVMIGVILFGLVALVHRFFPIGASTVFALLISLL
                     VLIALFIYQKHSYEFSELEQIEYLNNQANSGLMMLLDKMPVGVIKVRPDSNQVEWFNP
                     FAELIFAQENGEFDQKKLREIIDVGLDEERIYANFSGKRYAVNVDFDQGLFYFFDAST
                     EYSATNSLIGSRPVIGIISVDNYDELEDAVTDSQISQVNSFLAQFVSEFCHDYGIYYR
                     RGTMDRFYFFTDYAVLEKLIENKFSVIDKFREEAKKLDLGLTLSMGLAYGNENHHQIG
                     QVALQNLNMAEVRGGDQVVVKENDESKQPLFFGGGSASSVKRTRTRTRAMMTAVSDKL
                     KSVDAVFVVGHRNLDMDALGSAVGMQYFAQNIMNNAYTVYNPDEMAPDIARAIKKLSD
                     ENCSNLLTVEEAMKMVTFQSLLIMVDHSKIGLTLDKDFYDQFTQVVVVDHHRRDTDFP
                     NNAVLTYIESGASSASELVTELIQFQNDKHHKLNRIQSSLLMAGIMLDTKNFTSRVTS
                     RTFDVASYLRTRGSDSLEIQQIAATDFEEYRQINELILSGQRIEANVVIACADDTKEY
                     DNIIPSKAANTILDMAGIEAVFVVTRNTKGYVSISARSHSKINVQRIMEEMGGGGHFN
                     LAAAQVYDQTIAEVCEKLTDKIREEINGN"
     gene            16151..16603
                     /gene="rplI"
                     /locus_tag="U1404_000052"
     CDS             16151..16603
                     /gene="rplI"
                     /locus_tag="U1404_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEM5347048.1"
                     /translation="MKVIFLADVKGQGKKGEIKEVPTGYAQNFLIKKNLAKEATNQAI
                     SALRGQEKSKEKAHAEMIAEAEAIKAKLAEEATLVKFVEKVGPDGRTFGSITSKKIAE
                     ELDKQFGIKIDKRHIQLDHPIRAIGLIDVPVKIYQDVIGIINLSIKEA"
     gene            16635..17990
                     /gene="dnaB"
                     /locus_tag="U1404_000053"
     CDS             16635..17990
                     /gene="dnaB"
                     /locus_tag="U1404_000053"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM5347049.1"
                     /translation="MAELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFF
                     KHAHKLIFKAMIALSDRNEAIDATTMRNYLVNHGDLENIGGLAYLAEIISSVPTAANA
                     EFYAKIVAEKSNLRKLIARLTDAVNQAYEGADGSDDIIANAEKALIDVSEGASRSGFK
                     RIDDVLNINFDNLETRAKQTSDITGIATGYPALDAMTTGLHEEELIILAARPAVGKTA
                     FALNIAQNIGTKLGLTVAIFSLEMGAESLVDRMLASEGVINSRAIRTGHLTQEEWNKY
                     MVAQANLARASIYIDDTPGIKITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENR
                     QQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIV
                     AFLYRDDYYERGEQEDGGIPNNTVEVIIEKNRSGARGTVELMFQKEYNKFASISKRED
                     G"
     gene            17994..18245
                     /locus_tag="U1404_000054"
     CDS             17994..18245
                     /locus_tag="U1404_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001278154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347050.1"
                     /translation="MSDAFTDVAKMKQIKQDIKDHEGQIVELTLENGRKREKNKQGRI
                     VEVYQSLFIVEFEDPNNTFVESYTYSDILTEKILIHYLD"
     gene            18456..19067
                     /gene="rpsD"
                     /locus_tag="U1404_000055"
     CDS             18456..19067
                     /gene="rpsD"
                     /locus_tag="U1404_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014407971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEM5347051.1"
                     /translation="MSRYTGPSWKQARRLGLSLTGTGKELARRNYVPGQHGPNNRSKL
                     SEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRL
                     GLATTRRQARQFVNHGHILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVEATL
                     GRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML"
     gene            19134..19583
                     /locus_tag="U1404_000056"
     CDS             19134..19583
                     /locus_tag="U1404_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM5347052.1"
                     /translation="MWRKYFLLVLLAILVVGGAFFLSQSAATPNESDYVKAVKSYQAI
                     SIDEVEQKVQDEEEFILYIGRETCPYCRDFVPKLTEAVERSRATIYYLDSESDPNGKI
                     QQFRQSQGLATVPSLTYYKSGKLSGILRKGSQATLSEIENFLALQGQ"
     gene            19716..21233
                     /locus_tag="U1404_000057"
     CDS             19716..21233
                     /locus_tag="U1404_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HEM5347053.1"
                     /translation="MKKKAWLGLLMSLLAVLFLVACGGKSEKTATSSSSTTSSSSEEA
                     VSGASEKVYTDPSELKDSYDVIVVGSGGAGMSAAISAKDAGASVALLEKMPVIGGNTA
                     KSSAGMNASQTKFQEAEGIADTNDKFYEETLKGGKGTNDPELLRYLVDNSASAIDWLD
                     GMGITLSNLTTTGGMSEKRTHRPADGSAVGGYLVNGLYHNLVERKVPIFVNADVTKLQ
                     DKDGAVTGVEVKIAGETKQISAKAVVLATGGFGADLEMVAKLNPALKGYVTTNQEGST
                     GDGIALAESEGAATVDMEQIQIHPSVEQETSYLITEAVRGEGAILVNSKGERFVNELE
                     TRDKVSAAINSLDPNYAYVIFDDALKDRVKAIAQYEEKGLVKTGATLADLAKEIDLPA
                     DTLQTTLDTWNKAVADKNDAAFGRTSGMDHALNTGSYHAIKVAPGVHHTMGGVKINTN
                     TEVLKTDGSAISGLYAAGEVTGGVHGQNRIGGNAVADIIVFGRQAGEQAAGFAKK"
     gene            21319..22683
                     /locus_tag="U1404_000058"
     CDS             21319..22683
                     /locus_tag="U1404_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5347054.1"
                     /translation="MKKKIVLLLGAIAVIVLTWSAIAGQRQQSYAEAELRDQDKIWII
                     TDLHYLSQDLFDDGEAFSYIEKTAAGKDLRYGKERMEALVEQVGREHPSLLLVSGDLT
                     LNGEKQSMVELAQYFTEIEEQGTEVLVIPGNHDIASGWARAFKGDQQIVTDQVTAQQF
                     AELFAHHGYQQASSRDKASLSYLAKPFSNAWFLMIDSNIYSDGYGKGAPPTNGRINKE
                     TLEWIEIQLQAAKETGVSLIPVVHHNVLQQHAMLSKGYTLDNAADLKTLFNQYGIQFG
                     FSGHTHSQNIVKEDLGQVNYTEVVNGAFSIYPAIIGQLSLDDTSIHYQKTQLDMASWA
                     DKHQPSDPNLQDHVTYLQTVFDNTSDIMVHNMLNDEGWYDGETADAISQFIMPANRAY
                     FSGEKLDQTWLDEKVFPSQAYQTLQAASPRSFLADYLDVIIKRSQNRDVEKLVLKTEK
                     DFVQ"
     gene            22847..23860
                     /locus_tag="U1404_000059"
     CDS             22847..23860
                     /locus_tag="U1404_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5347055.1"
                     /translation="MTLLSIAIPSYNSEAYLHYCVHSLVMGGDKVEILIINDGSSDRT
                     QEIAEELANQFSNVRAIYQENKGHGGAVNTGIREAKGKYFKVVDSDDWVDTRAYLKIL
                     ESLQALEDENTPVDAFISNFVYEKEGQSRKKSMSYQSTLPENRIFGWEDVGAFSKGQY
                     MMMHSLIYRTDLLREVGLVLPEHTFYVDNIFVFTPLQAVKTMFYLPVDFYRYFIGRND
                     QSVNESVMIKRIDQQLKVNRILVDNLDLEAIDNPDLRSYLLNHVEITTIISCALLNRA
                     GTAEHMMKKQELWHYIRDNNPALFKIVRKGLLGQLTNLYGYPGRKIFNAVYKIAKRIY
                     GFN"
     gene            23930..24841
                     /locus_tag="U1404_000060"
     CDS             23930..24841
                     /locus_tag="U1404_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5347056.1"
                     /translation="MQRLGQTGLEVSRIGLGCMRMASLTEQETAKVLDTVVGQGINFF
                     DHADIYGGGESEIRFAQGAKLAGLKREDLLLQSKCGIRKGYFDFSKDYILESVDGILK
                     RLDTEYLDVLALHRPDALMEAEEVAEAFYLLKKAGKVHHFGVSNQNIYQMELLQSYFD
                     QPLVVNQLQLSPAHTPLIDAGLHVNMKDDAATMRDGGLIDYCQLKKITIQAWSPFLID
                     LQRGIFANHPNYALLNQTIGEIAERYNVSHETIVVAWILRHPAKIQTIVGSMNPERLK
                     KIAQASQIILTRPEWYDIYRSAGNILP"
     gene            24851..25303
                     /locus_tag="U1404_000061"
     CDS             24851..25303
                     /locus_tag="U1404_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347057.1"
                     /translation="MQWEIKAFDQLSLQELYTILTLRTDVFVVEQACPYPEIDGKDPS
                     CLHLLGTDNGELVAYLRILPAGLSYDEVSIGRVVIKPSHRGKGLGRPMMEQAIAYITT
                     EWKESQIKIGAQAYLEKFYQSLGFEPISEVYLEDDIPHLDMLYRKLVV"
     gene            25398..27149
                     /gene="aspS"
                     /locus_tag="U1404_000062"
     CDS             25398..27149
                     /gene="aspS"
                     /locus_tag="U1404_000062"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEM5347058.1"
                     /translation="MKRSMYAGRVRKEHVGQEITLKGWVGRRRDLGGLIFIDLRDREG
                     IMQLVINPESVEAEVMAKAESLRSEFVIEVTGTVVEREQANDNIPTGAVELQVTSLTV
                     LNTAKTTPFEIKDGIEASDDTRLRYRYLDLRRPEMLNNFKLRAAVTHSIRNYLDELEF
                     IDVETPMLTKSTPEGARDYLVPSRVSKGHFYALPQSPQITKQLLMNAGFDRYYQIVKC
                     FRDEDLRGDRQPEFTQVDLETSFLNEVEIQDIVEGLIAKVLKDTKGIDVTLPFPRMAY
                     DHAMNFYGSDKPDTRFEMLLQDLTELVKEVDFKVFSEAPVVKAIVVKGAADCYSRKDI
                     DKLTDYAKQFGAKGLAWVKVDKGELAGPVAKFLTGITENLTASLQLEDKDLVLFVADE
                     LEVANNTLGALRNRLAKEQGLIDESKFNFLWIVDWPMFEWSEEEGRYMSAHHPFTLPT
                     EETAHHLDGDLAQVRAVAYDIVLNGYELGGGSLRINQKDMQERMFKALGFSAEDAHEQ
                     FGFLLEAMDYGFPPHGGLAIGLDRFVMLLAGEDNIREVIAFPKNNKASDPMTQAPSTV
                     ASAQLEELALNITLENE"
     gene            27142..28074
                     /locus_tag="U1404_000063"
     CDS             27142..28074
                     /locus_tag="U1404_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5347059.1"
                     /translation="MNKFFRKQRVRFLRKARKNKFWSVILGISREKYAERISGSIIYG
                     LLSSIAVNFFFRPGNVYSSGVTGLAQIVSALAASYAGWNVPIAVVYYGLNIPLLILAW
                     YKIGYKFTIFTFITVSFSSFFIQFMPPVTLTTDPLVNAIFGGLMLGTGIGFALRNNVS
                     SGGTDIVSIIIRKKTGRQVGSISLIVNIMIMLIAGMTFGWQYALYSMVALFISSRMTD
                     AIFVKQKRMQAMIITNHPERVIKKIHKKLNRGVTIINGAEGAYNHEQKTILITIITRA
                     EFNDFKHIMKKADPKAFVSVADNVNIIGRFVESD"
     gene            28151..28603
                     /gene="nrdI"
                     /locus_tag="U1404_000064"
     CDS             28151..28603
                     /gene="nrdI"
                     /locus_tag="U1404_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HEM5347060.1"
                     /translation="MKKKIYLVYISLSGNTESFVKRLKSFFQFQTDWEIELVHVKDLV
                     KQDIPFYQLDAPFVAFLPTYLEGGNGVDNGDVEILTNPLGDFIALGTNTELCLGVVGS
                     GNRNFNNQYCLTAKQYAERFNFPVIDTFELRGMQNDIERIGRKIMELM"
     gene            complement(28756..30807)
                     /gene="pulA"
                     /locus_tag="U1404_000065"
     CDS             complement(28756..30807)
                     /gene="pulA"
                     /locus_tag="U1404_000065"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pullulanase"
                     /protein_id="HEM5347061.1"
                     /translation="MALRQFQAFLDDVATIRLVMEKRFDSEHMSFSLESNDATSQLFI
                     HSCLEVDNLVIYYLTSLHALTLDKDYTIYDQDRNKAELGYGHIVRSTLFEQSYTYNGQ
                     DLGATYRPEATTFKLWAPISKQVFLVLEGNPHAMTKGAKGVWEITVEGDLEAHSYHYL
                     HKVNGEWISVHDPYALSSTTNSGDSYVINPDKLHKIRRAKTQRPISQAIIYEMSVRDF
                     SWQKEAGFKHRSQFLGLTESPTMDGMKLGMDYIRELGVTHIQLLPVYDFGSVDENKPQ
                     AVYNWGYDPMQYNLPEGSYSSQPNDPYARIIELQEAIQAYHDADISVIMDVVYNHVYH
                     AEKYAFELIVPGYFYRYDDHGMRTDGTFCGNDVASERSMVRNYIKQSLRQWLELYGFD
                     GFRFDLMGILDSETINQIQTELSAIHPNVYLYGEGWKMATGLEFEKLAHQYNAEHLPE
                     ISFFNDDYRDTFKKLLLNPNRLVDKQLHEKVQHLLTGSRLSHFLTPQQSLNYIECHDN
                     ATAFDYFHIENPNWTPQQQKRAASFGLQLILISQGMAFIHSGQEFFRTKDEIDNTYNV
                     PDRINRLDWTRAIRYKEHIEFIQELITFRKNNPILSQDNYESIQETCDFYWLTEYVLR
                     YQVTSEEKTIQFIINFADSDFTYEREKDKAVLYNYPPVENRDQQEITIAGQSICILED
                     K"
     gene            complement(30831..31814)
                     /locus_tag="U1404_000066"
     CDS             complement(30831..31814)
                     /locus_tag="U1404_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5347062.1"
                     /translation="MRATIKDVAKLAGVSPSTVTRVIQNSSAISQKTKDLVRKAMADL
                     NYHPNLNARSLVSSYTQVIGLVLPDDSDVFYQNPFFPTALRGISQVAADHNYAIQIST
                     GKNEEQRLEAISQMVYGKRVDGLIFLYSKPDDPLVQLAIQHKFPFLILGKADSPFISL
                     VDNDNIQAGFEATNYFINKGYKNIAFVAGNKELVVSQDRYTGYKNALKSHNIPLDENK
                     VKFVSGFLLEDSAYKISKKLLKQDLDAIVTTDTSVAEGVVKYLNEVGVKLPIISFDSV
                     KPKLDIEAYVDVHAIKLGRVAFNTLHQIINDNKEDKQVCYRRVIPHTITEL"
     gene            complement(31824..32606)
                     /locus_tag="U1404_000067"
     CDS             complement(31824..32606)
                     /locus_tag="U1404_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347063.1"
                     /translation="MLPYPFSYFSSIFSPRNMFANRRLMNLWQRLFTTLFLVALLLIP
                     SSLQTVNLETYPLENFVEGIYAPLTDQVVDDLRQHAVIENNHLTYTGNTNWEQVTFGD
                     TVSSSSDFTYQFANQSLTIRKGSDILSELTYEGLNTDDFASKEALTAAISKKWYQANR
                     AAVGLSITLISTFILTTNLLFILLGASFFLFLTKKSRFFHFETFAECYNFALNCLGLP
                     TLIACLIGLFGQPVTTLLTIQNILFVLCLLWVFFKTKFRDEI"
     gene            complement(32666..33508)
                     /locus_tag="U1404_000068"
     CDS             complement(32666..33508)
                     /locus_tag="U1404_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5347064.1"
                     /translation="MKVSVKTRRILNQTLTYLYLIVLSVIIIYPLLITIMSAFKSGNV
                     VAFKLDSNINFTLDNFSKLFSETLYGTWYFNTLIIALLTMVIQTSIVVLAGYAYSRYN
                     FIARKQSLVFFLIIQMVPTMAALTAFFVMALMLNALNQSWFLIFLYVGGGIPMNAWLM
                     KGYFDTVPISLDESAKLDGAGHFRRFWQIVLPLVRPMIAVQALWAFMGPFGDYILSKF
                     LLREKEFYTVAVGLQTFISDVKNMKIAYFAAGAILIALPISILFFFLQKNFVSGLTSG
                     GDKG"
     gene            complement(33510..34805)
                     /locus_tag="U1404_000069"
     CDS             complement(33510..34805)
                     /locus_tag="U1404_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003027817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5347065.1"
                     /translation="MTMKQNPGKALLLSLIPGLGQIYNKQKAKGYIFLGVTLAFLVYF
                     IAIAAGELGNLITLGSVRGQDNSLFMLIRGSFHLIITVVYLAFYALNLKDARDTAKRW
                     NSGMPVATTLKEMVKGIYENGFPYLLIIPSYIAMTFAIIFPVVVTLFIAFTNYDFKHL
                     PPSALLDWIGITNFTNIWKLSTFRTAFGSVLGWTIIWALCASTAQIVIGILTAIIANQ
                     PFIKGKRIFGVIFLLPWAVPAFVTILTFSNMFNDSVGAINTQVLPFLSKFLPFIDNFL
                     IPWKTDPFWTKVALIMMQAWLGFPYIYVLTLGILQSIPNDLYEAAYIDGASAIQKFRN
                     ITLPMILAVAAPTLISQYTFNFNNFSIIYLFNNGGPGSVGGGAGSTDILISWIYKLTT
                     GTSPQYSMAAAVTLIISMIVISISMIAFKKLNAFEMEDV"
     gene            complement(35018..36277)
                     /locus_tag="U1404_000070"
     CDS             complement(35018..36277)
                     /locus_tag="U1404_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5347066.1"
                     /translation="MKHNLLKSVALLAASTAVLAACSNSGSSTEASKSAEGSKELTVY
                     VDQGYESYINDVKAGFEKENGVSVTVKTGDALTGLDNLSLDNQSGSAPDVMMAPYDRV
                     GSLGSEGQLSELTLADDSKADDTTTALVTNGGKVYGSPAVIETLVLYYNKDLLTEAPK
                     TFAELETLAKDSKYAFAGEEGKTSAFLADWTNFYYTYGLLSGYGGYVFGENGTNPKDI
                     GLANEGAIKAIEYAKTWYEKWPQGLQDGTAANNLINTQFTDGKAAAIIEGPWKAASYK
                     EAGVNYGVATIPTLVNGKNYSAFGGGKAWVVPAGAKNQEMAQKFVDFLTATDQQKALY
                     DATNEVPANTEAREYAVSKKDELTTAVINQFASAQPMPNISEMGSVWTPAGNMLFEAA
                     SGSKDAKTAATDAVKAIADEIAQKHSN"
BASE COUNT        10621 a         6528 c         8470 g        10812 t
ORIGIN      
        1 tccccttttt gtacactttc tagggaaatg taacgctgta taaagtttac actttttttc
       61 aaaaatccag taaaatcaac taaaaaggcg tgtaaagcaa ccaaatgcta aagccaagca
      121 taccttatca caaaatggta taatggaagg tacaatgttt gaaagaggaa gacgatgaaa
      181 ttacaagagg gagtagatct tcattttatt gatacagatc agtttacgac aaatcgtata
      241 cgtattcgct ttgcagctga aatgagtgag gctacagttg ctggtcgtgt gttagttgca
      301 aatatttttg aaatgggtaa ccaagaattt cagactgctc aggctgttcg gagaagattg
      361 gcagaattgt atggtgctca gttctcgacc tcagtttcga aacgtggtag ggtgcactgt
      421 gtagatgtga caatttcata tgtcagtcct cgtcacttac cagaaaatga ggatattaca
      481 gtggagattc ttgatttttt atacacatgt atatttagac cactgaaaaa ggggcgagga
      541 tttgatagcc agattttcga ggttgaaaaa acgaatttaa tcaattttct tcagtcagag
      601 atagaagata atttttatca tgcagatgtt gaaatgagta agctttttta taaagatccc
      661 tctcttcaaa ttccacgcgt cggtaggctt gatttggttg aaaaagaaac agcagaatca
      721 acttttcaga tttatcggaa tatgttgcgt atggataaaa ttgatatatt tgtcttaggg
      781 aaggttgaca gagaacaagt caaaagaaaa cttgaagatt ttggttttac ttatagaaat
      841 ccaaaattag agttagaata taatcaggaa tactcaaaca tcacgcaaga aaaaatcgag
      901 cgtaaacagg caaggcagtc cattttggaa ttggcatatc atttacaagt agtttacaac
      961 gatgtaaact atccggcttt gatggtattt aatggtctac tgggtgcttt ctcccattcg
     1021 aagttattta tgaatgttcg tgagaaagaa agtttggcct atacaattgg cagtcaggtt
     1081 tctatttttt caggaatgct gaaggtctat gctggaatta gccatgaaaa cagactcagg
     1141 gtaatgaagt taattagtaa acaactactt gatttaaaat gtggtaagtt tacagaagaa
     1201 gaattagagt tgacaaaaaa catgttgatt cattcagcaa ccttggctca agataggcag
     1261 aataatttga tagaacaagt atataatcaa gttaccttag gaaatagaaa tttaagttgg
     1321 ttagattgga ttgaggctat caaatcggta tcaatagagg atgtcattcg agtaggacag
     1381 atgattaatt tacaggctgt ttactttatg gagggaacag aagaatgaag ttagttgaga
     1441 agaagtatcc ttacatgaaa gaatctgtct tttatgggaa agttgacaat gggttgacag
     1501 ttattttgct tcctaaagta gatttccatg agacatatgg aattctaacg acaaattttg
     1561 ggggtattca tactcgattt acattggcta atggtaaaag tgttgtttat cctgcaggga
     1621 ttgcacattt tttagaacat aagctgtttg aaactgagaa tgaagaggat attatgaatg
     1681 agtttgctaa attgggagca agcgcaaatg cttataccag ttttagacag actagttact
     1741 tattttcaac gactcagaaa gtattggagt ctctatcact tttacaatct tttgttcgag
     1801 aaccgtattt tacagaagac aatgtagaaa gagaacaggg gattattgaa caagaaattg
     1861 agatgtatca agatgatgca gattatcgct tgtttacggg aattttatca tcgctttatc
     1921 cagaaagtcc tttggcctat gatatagcag ggacagttga atcaattgct gcaattactg
     1981 cggatgattt acatgagaat tttgaagtgt tttatcatcc aagtaacatg aatttattcg
     2041 ttattggtaa ttttgattta gaggcagttt ggaaacaaat ttcaagttat caagtggctc
     2101 agatggataa tccagctcag tcgtttgaat tggcaggtgt ccaaaagttg ccgatacagg
     2161 aacatctctc agaacaattt gaagtatcta ccccaaaatt ggctgttggt ttacggggaa
     2221 atgacgaggt tgataaggag actattcaga aatatcggct tagtttacaa tttttatttg
     2281 ccatgttgtt tggttggact tcaaaacgat atcaacagtt atacgagcag ggaaaaattg
     2341 attcttcttt ccagttccaa ttagaggtta cacctgaata ccactatttg attatctcgg
     2401 gcgatactca agaacccatt acgctttcta gtatactgat gaaagcactt aggaaattcg
     2461 aggatgatgc agatgtgaca gaggatcatt tacaattgtt gaaaaacgag atgtatggag
     2521 attttattcg aagcttaaat tctcttgagt ttacagctag tcactttgtt tctcagtatt
     2581 cagaatatga aaatgttttt gatatacctc aaatgataca aagtcttcag ttagatgaca
     2641 tcagagaggc aggtcgtcgc tttattgatc actgtgatat gacagatttc acgatttttc
     2701 caaaataagt gggcgcaacc cgtcgaaatt tctttggaat tttgttagaa tagtatactg
     2761 tacatgatga gcgatagaga gaggatatta tgagacaaaa gagtataggg gaagtactta
     2821 gaacagctag agaaggacgg agttggacat ttgttgactt gcaacggata acaaaaatcc
     2881 aagctaaata tttgcaggca cttgagtaca atgattttga ttttattgca aactcagatg
     2941 atgttcagtc tattttaaaa gcatatgctg aggctttgga attagatgca gatgttctac
     3001 tggatgctta cgagaccaat agtttagtga aatattatga agatggagaa gaagaactac
     3061 gctcttcaga attgaaaaga agctataagg ttcgtaaacg taaaaagaac tcttaccttc
     3121 cgttgattta cttattactt gcgacgggtt tgattattat ttttgtgact tatattgttc
     3181 atagcaggct ccaaaataga gcatctatta cgcctactac aacgtcatat agtatagttg
     3241 agcaatctgt atctgaagca agtagtggca cagagacgag ttctactgag caggcgcagt
     3301 caaattcaac gagttcaagt agttccgtta cagaaaatgt gactatttca ggatcaggtt
     3361 ctaacattgt tgcgaccctt aaaacagtga cttatccagt agaagtaact gtaacagcaa
     3421 aaaatacaac gagttggatc agcctttctg acaccttgtt agaggggggc gttacactaa
     3481 cacctgataa tccaacagta actactactg ttgaagaagg agtgacttct actacactta
     3541 ttcttggtgt tgtcaaagga gtagaggtaa ctgtaggtgg ccaaaagcta aatctatcag
     3601 ctctgacagc agatacaggc tcaattacaa taaattttga acaataaagg ttttatatga
     3661 aaaaagaaaa tattcccaat gcattgacga taggtaggat tttggtaatc ccaattttta
     3721 tcttgttact gaccgtttgg gattcaacaa ttagtcatgt cttagcagca cttatttttg
     3781 cattagctag tattacggat tatctagacg gctacttggc tcgtaaatgg caggttgtaa
     3841 caaactttgg aaaatttgcg gatccgatgg cagataagat tttggtgatg acagcattta
     3901 tcatgcttgt agagcttggc tttgctccag cttgggtagt tgcaattatt atttgtcgtg
     3961 aattggcagt gacaggtctt cgtctactct tggtggaaaa tggaggaaca gttctagctg
     4021 cggctatgcc aggaaaaatc aaaacatttt cacagatgtt tgcagttatt ttcctgctct
     4081 tacactggaa cgccgtgggg caaataacac tctatattgc acttttcttt accctatatt
     4141 caggttatga ttatttcaag ggtgcgtcct tcttgtttaa agatacattt aaatgatgaa
     4201 tattattgaa gtaaaaaatt taaaatataa atacaaccaa gaggatgagc gctatactct
     4261 aaatgatgtt tcgtttcacg tgaaacaggg agagtggctg tctattattg gtcataatgg
     4321 ttcgggtaaa tcaacaacag ttcgtttgat tgatggtttg ttggaagctg aatcaggtga
     4381 tatttatatt gacggtgatg ccttaaccat tgataatgta tgggataagc gacgcttgat
     4441 tggtatggtt tttcaaaatc cagataacca atttgtaggc gctacagttg aagatgatgt
     4501 tgcatttggt ttagagaatc agggaatccc tttggaggag atgcgtagtc gagttgacga
     4561 agctttggaa ttagttggaa tgactgattt caaaacacgt gagcctgctc gtttatctgg
     4621 tggtcagaag cagagggtgg cgattgctgg agtggttgcc ttgcgtccaa aaattattat
     4681 tttggatgag gctacgtcta tgttggatcc agaaggtcgt ctcgacttga ttaagattgt
     4741 ccgtgaaatt aaggagcgtc atggtatgac ggttatttct ataacacatg atttggatga
     4801 ggttgcattg agtgatcgag ttatcgtgat gaaaaatgga caggttgaat caattagcac
     4861 tccaaatgaa ctatttatgc gagaagattt ggtagattta gacttggata gaccgtttac
     4921 gacagaactg gcttcatctt tgcgccagac tggacttgat ttaccgctcc gctattttac
     4981 agaggaagaa ttagaggaaa ctttatggga attgttctcc aagaagtaag ctatacctat
     5041 caagctggca ctccttttga ggggcgtgcg ctttttggtg tggatttgga gattgttgat
     5101 ggctcttaca cggcccttat tgggcatacg ggttcgggca aatcaacgat tttacaactc
     5161 ttgaatggat taaatgtacc aacagaagga agagtagtca ttgatgatgt tgtgattaca
     5221 gcgacgtctg aaaataagga tattaagcaa gtcaggaaga aagtggggct ggtgttccaa
     5281 tttcctgaaa gtcaagtgtt tgatgaaacg gtcttaaaag acgttgcttt tggtccacaa
     5341 aatttcggag tttctcagga agaggctgaa acgattgcgc gtgaaaagtt ggccttggtt
     5401 ggaattgatg aaagcttgtt tgagcgtagt ccttttgaac tatctggtgg tcaaatgcgt
     5461 cgggtagcta ttgctgggat tctggcaatg gaaccaagta tcttagtttt ggatgaacca
     5521 acggctggat tggatcctgc gggtcgtcag gaattgatgg atattttcaa aaagcttcat
     5581 gaatcaggca tgacaatcgt tttggtaact catttgatgg acgatgtggc taactatgct
     5641 gattttgttt acattatgga aaagggaaag ctggtccgtt ctggtaaacc agtcgatatt
     5701 tttcaagagg tagatttttt agagagtatt cagttgggag tgcctaagat tactaagttt
     5761 gcagctaatt tggagagaag aggttttgta tttgaacgtc ttcctattac aattgaagaa
     5821 tttacgggga tggtgacaca tggataaatt aattttaggt cgctatattc ctggggattc
     5881 aattattcat cgtttggatc caagaagtaa gcttttagca atgtttggat ttctattgat
     5941 gattttttgg gccaataatt tggtcaccaa tgccttgttg atagcatttg ttttaggaat
     6001 ggttgtttta tctcgtattc gcttatcatt ttttattaat ggtttgaaac cgatgatagg
     6061 aattattcta tttacaactt tcttccaggt tttctttaca cctggagcga ccattctatg
     6121 ggaattttgg atttttaaat tatctgtaga agggttgcaa caggcggcga ttatttttgt
     6181 tcgctttgtt ttgattattt tcttctcaac cctattgacc ttgacgacga caccgctcag
     6241 tttggctgat ggtattgagt cggggcttgc acctttgaag aaatttaaag ttcctgtgca
     6301 tgaaattggt ttgatgttgt ccatgagctt gcgttttgta ccgaccttga tggatgatac
     6361 cactcggatt atgaatgctc agagagctcg tggagtggac tttaatgagg gaaatcttat
     6421 tcagaaggta aagtcagtta ttcctatttt gattccgtta ttcgcatcaa gttttaagag
     6481 ggcagatgct cttgcaacgg cgatggaggc gcgtgggtat caaggcggag atgggagaac
     6541 caagtaccgg attttggaat ggaagttagc agatacgtta gcaattttag ttatgttagc
     6601 tttagctgga ctcttattta tattgaaaaa ataagtaaaa aacgctagaa atagcgtttt
     6661 tattgtctaa tctcaatttg tctgtaatat ttgtaacaat ttcacaaagt ctaagtaata
     6721 gttagagggt atgatagaca catgacagaa aggaatgtga ctattatgaa cattacatta
     6781 aagaaaaact taaaaacaac tattgctggt ttggtagcgg gaatctccct tttaactgcg
     6841 ggtgtagtca gtgcagaaac ctatactgta aagtctggtg ataccctgtc tgaaattgct
     6901 gaaacataca atactactgt tgaaaaatta gcagagcaga ataagattac caacttagat
     6961 tttatccatg tcggtcaagt tatcgaattg ggagatgtga cagtgaaggc agtagagagt
     7021 tcaattgaac aaactcaatc aacatcaact tctactgcaa cagtaacaac tagcacctat
     7081 tcttcaaatt tgagtgctga agatgcagca gcaaaagaat ggattgcaat gaaggaatca
     7141 agcggtagct atgatgcccg taacggtatc tacattggtc gttaccagtt gacaaatact
     7201 tacttgaatg gtgactactc accagaaaac caagagcgtg tagcagatgc ttatgttgct
     7261 agtcgctatg gttcatggtc tgcagccaag gctttctggt tggcaaatgg ttggtactaa
     7321 gataaattag aagaggtcta gcacgatgct agactttttc tgtctcacga atgtatttcg
     7381 caactgcttt ttcgttcagt ccaacggtac tgaatagtaa cctctagccc aaaacttttg
     7441 atttccacgc tgtatggaca taggtgatgg aaaatatcaa ttaagtctag tctaattttt
     7501 tagtaaatgg attttctgcg gtacttagga gtgacataca tttggtatgt gataaactgt
     7561 aacggtttta accatgctaa gctagtccac tggactagtt tactcctcct ttatttaact
     7621 tgacaaatta gattataaca ggaaaaaaat agaagctcaa agccttgcca gccaccagta
     7681 taggtggtat ttttcttgtt tttctctatg agaaaactag cccgaagcca taataagaaa
     7741 aaggaccgtt agggtccttt ttggtttaca ttattgtcaa tcttccccaa aaatttcttg
     7801 agtaaggcga cgacccgtcg gtgtagctgc aaggccacct tcagcagttt cacggaaggc
     7861 agttgggagg gcggctccaa cttggtacat ggcattgata acttcatcca cagggatttt
     7921 tgattcaatt cctgccagtg ccatatcagc agccaccata gcgtagctag ctcccatggc
     7981 gtttcgtttg acacatggga cttctaccag accagcgacg ggatcgcaaa tcagacccag
     8041 catatttttt atgacaaagc agatggcttg gctggcttgg tagggagttc cacctgctgc
     8101 cagtgtcagg gctgcggcag acatagcaga ggcagatccg acttctgcct gacagcctcc
     8161 ttctgcacct gagatggagg cgttgttggc gataactagt ccaaaggctc cagctgtaaa
     8221 taggaagtca agttgctgtt cttctgtcaa attgagcttt tcaatagcaa ctcctagcac
     8281 agctggtaga cagcctgcag atcctgctgt cggagtggca cagactaagc ccattttggc
     8341 attcaattca ttaacggcca tggcatttct tgcggcggat aggacagcgg aatctgacag
     8401 ggttttacca gatttcatat aggcatctaa cttggcagca tcgcctcctg ttaaaccaga
     8461 tacagattta ctttcagtaa gtccatctac gatggaggct ttcataactg tcaagtttct
     8521 tgacataatt gtcaatattt cttcgcggct acgaccggtc aactcaattt cagtcgcgat
     8581 catgagttca gctacattag cagaaaagtt gtctgcttgc tgaactaatt cttcgatagt
     8641 ataaaacatg tctttctctt tctagttgaa gaaggttaca ttgtgcaggt gtggaatttt
     8701 ttcaatttct gcaatagaat tttcacattg gcgagcatcc acttcgataa tcataatggc
     8761 tttttcgcca gctttttcac gtgtcacgtt catttgggcg atattgatgt catacttaga
     8821 aaggacatcg gtcactttcg caatcatacc agggacatct tggtgaacaa taataatagt
     8881 tggcgtattc atattgagat tgacagagaa gccgttgagc tctgttactt gaatgtttcc
     8941 cccaccgatg gaaacgcctg tggctgagat ggatttttta tcgtttttta tgatgattct
     9001 ggtggtattg ggatgtgggg tattgctgtc cttgttgaca cgccagtaaa ccttaatgcc
     9061 tcgttctctt gcaatatcaa gagagtcagg aatgcgggga tcatccgtat ccatgcccag
     9121 aatacctgct accaaggcta catccgtacc gtgaccacga taggtcttgg caaaggaatt
     9181 gtagagttga aattccacct ctgtcggctc atcgccgaag atggaagata caattttccc
     9241 aattcggacc gccccagctg tgtgactaga agatggaccg atcataacag gtccaataat
     9301 atcaaagacc gactgaaatt ttaagtttgt catagtaatc ctcacgtttt tcttggtact
     9361 attatatcaa attttctagt tagagaatat gcctagatga atgtgttttc ttatgttaaa
     9421 attctatcgc ttaccctttt tgtatggtat aatacaagtt gttcaaaatc gtcaatcgtt
     9481 tttggataat caaattttgg aatacgacct tcaaatcgtt atttctacga aaagatggga
     9541 gaagattatg tcaattgaca attctaaaac ccgtgttgtt gtcggtatga gtggcggtgt
     9601 ggattcatcg gttacggctc tcttgctcaa agagcagggc tacgatgtga tcggcatctt
     9661 catgaaaaac tgggacgaca cggatgaaaa tggcttctgt acagcaacag aagattacaa
     9721 ggatgtggct gctgttgcag accagatcgg cattccttat tactctgtca actttgaaaa
     9781 agagtattgg gatcgcgtat ttgagtactt tttagcagag tatcgggcag gtcgcacacc
     9841 caatccagat gtcatgtgta acaaggaaat caagttcaag gctttcttgg attacgctat
     9901 gaacctgggt gcggactatg tggcgacagg gcactacgct caggtgtcac gcgacgagga
     9961 cggcaccgtt catatgctgc gtggggcaga taatggtaag gaccagacct acttcctcag
    10021 ccaactctca caggaacagc tgcagaaaac catgtttccg ctcggccatt tacaaaagcc
    10081 tcaggtgagg gaaatagcag agcgagcagg cttggcgaca gctaaaaaga aagactcgac
    10141 aggcatctgc tttatcggtg aaaagaactt caaagaattt ctagggcagt atttgccagc
    10201 ccagcccggt cggatgatga ccgttgatgg tcgtgatatg ggtgaacaca caggccttat
    10261 gtactatacc attggccagc ggggcgggct tggtatcgga ggacaaatcg gtggggacaa
    10321 tgagccttgg tttgttgtcg gaaaagacct gtcaaaaaat atcctctatg tcggtcaggg
    10381 cttctatcat gagtccttga tgtcaacttc tttacaggct agtcaagtcc actttacacg
    10441 tgatatgcct gaagaattca agctggaatg cacagctaag ttccgctacc gtcaaccaga
    10501 cagtcaagta actgtcaagg tgaaaggtga caaggcagaa gtcatttttg cagagccaca
    10561 acgagcaatc acaccaggac aagccgttgt tttctacgac ggacaagagt gtctgggcgg
    10621 tggtatgatt gatatggcct ataaagatgg agaggcttgt cagtatattt aatcaaaaat
    10681 aaaagcttag cacccttgtg ctgagctttt tatcttatcc ccagaaagca tcttcggcgg
    10741 tttggtcggc tgagaagagc caaacttcct tgattttgcc atcttccata cggaaaagat
    10801 cgatgccatt catgtttagt tcttcaccgt ctgttcgagt accgaggaat gttacgttag
    10861 cggcaacaag agtatcatta tcggataccc agtttgtcac tactttgaat gttccatttg
    10921 ttttttcggc gaaagttgct agatgtgctc cgagtacttc cttaccaatt ttagcaccag
    10981 atgttgaatg atttccgggt tgatgccaga taatgtcgtc tgccattgtt tcaaaaagag
    11041 ctgcaaaatc accagcgatg agagcattgt tataggcatt aaaaatttcc aagtttgttg
    11101 acatttgatg tcctccaatt tttttgatat agtacaatta tagtggaagt aatcaattat
    11161 acaagtaggt acttttgcat ttgttggtat caaaagtgat actattgtga taaataaagg
    11221 agaatttttt tgaaaaaagt tagtgaatat ggtatttgcc cttttgcaac aacacaaaag
    11281 gtcttgactg gtaagtgggg attggtgatt atctaccaac tcagtacagg aacgaaacgc
    11341 ttcaatgaat tacagcgact gattccaggt atcactcaaa ccatgttaac aaggcacctt
    11401 agacaattgg aggaggatcg cattattagt cgcacggtct atgcagaagt cccccctcgt
    11461 gtagagtata gcttgactga aatgggcgaa aaatttcgtt cggtgctgga tgctgttgag
    11521 gcttggggct tagaatatat tgaaacgtta acgtaacacc agatttgaaa ttctacaaat
    11581 cttttgctaa aataagagta acaatcatca tgatggtcaa agctcatggg aattgtaggc
    11641 ttttttgtcc tgcaattttc gagagttttg gctatttttt gctattgggg agagaagatg
    11701 gatttcagaa ccaaagttga caaccagatt ttcggtgtcc gtgccactgc attgcttata
    11761 aaagacggga aaatatttct cactaaagac tctaaggggc gttattatac cattggcggt
    11821 gcggttgagg tcaatgaggt agcagcagat gcggttgttc gagaagtcaa agaagaatta
    11881 gggattgaca gtcatgtcaa ccaactggct tttgttgtcg aaaataagtt tacacaggaa
    11941 ggcatacact ttcacaacat cgagtttcat tttatcgtgg agcctattgg agaaatacct
    12001 gaggagatga ttgaagataa cttgaaacaa gcttgtgaat ggatagacgt tgacaaactt
    12061 gtcaacctag atgtcgtacc agtttttctg gcagagaaat tgccaaactg gagtggacaa
    12121 gttacacaca ttatgaacat gaaggagaaa acaacatgac acacacattt gcagaaaatt
    12181 atgatgtcat cgtgattggt gcggggcatg cgggtgtaga agcaggattg gcagccagtc
    12241 ggatgggctg taagaccttg cttgcaacta ttaacttgga tatggtggcc tttatgcctt
    12301 gtaatccctc cattggtggc tctgccaagg ggattgtggt acgagaaatt gatgccttgg
    12361 gtggcgaaat gggtcgcaac attgacaaga cctatatcca gatgaaaatg cttaatatgg
    12421 gtaaagggcc agctgttcgt gccttgcggg ctcaggcaga taaggcagag tacgcagcag
    12481 agatgaagcg gacggtggag cgtcaggaaa atctgaccct gcgtcaaacc atgattgatg
    12541 agattttagt ggaagacggc aaggttatcg gtgtccgcac ggctaccaac cagaaatttt
    12601 cagccaaggc ggttgtggtg acgacgggta cagccttgcg tggtgagatt atcatcggtg
    12661 acctcaagta ttcatcagga cctaacaata gtctggcttc tatcacgctg gcggataatc
    12721 tgaaagaatt gggacttgaa atcggtcgtt tcaagacagg aacaccaccg cgtgtcaatg
    12781 ctcgtaccat taactacgaa gaaaccgaga ttcagccaga cgatgaaaag ccaaatcact
    12841 tttcattctt gtccaaggac gaggattatt tgcaggatca gattccttgc tggttgacct
    12901 atactaacgc gaccagccat gagattatca acagcaatct tcaccgagca cccatgtttt
    12961 cgggcattgt caaggggatt ggtccccgtt attgcccttc tattgaggac aagattgtcc
    13021 gttttgccga caaggaacgc caccagcttt tcctagagcc agaaggtcgc aatacagacg
    13081 aaatctatgt ccaagggctg tcaaccagtc tgccagaaga tgtgcagcag gacttgatcc
    13141 actccattaa aggtttggaa aatgcccaaa tgatgcggac aggctatgcc attgagtacg
    13201 atatggttat gcctcatcag ttgcgggcaa cgcttgaaac caagaagatt tcagggctct
    13261 ttacagcagg tcagaccaac ggaacatcag gttatgaaga agcagcaggt cagggaattg
    13321 tcgctggtat caatgcagcc ctcaaggtgc agggcaagcc tgagctgatt ttgaaacgaa
    13381 gcgacggtta tatcggcgtt atgattgatg acctggtaac caagggaacg gtggagcctt
    13441 accgcctctt gaccagtcgg gcagaatacc gcttgattct gcgtcatgac aatgctgata
    13501 tgcgactgac ggagattggt cgtcaggttg gcttggtaga tgatgaacgc tggcaggtct
    13561 tccaaatcca taaaaaccag tttgacaatg aaatgaagcg cttggagtct atcaaactca
    13621 aaccaatcaa ggaaaccaat gaaaaggttg ttgccatggg cttcaagcct ttgacagacg
    13681 ctctgactgc caaggaattc atgcgtcgtc cagatgtgac ttacgcagat gcggtagcct
    13741 ttatcggtcc tgcggcagag gatttggacg ccaagaccat tgaattgatt gaaacagagg
    13801 tcaagtacga gggctacatt gccaaggcct tggatcaggt ggagaagatg aaacgtatgg
    13861 aagaaaaacg cattccagcc gacattgact gggatgatat tgactccatt gcgaccgagg
    13921 ctcgccagaa attcaagctg atttcaccag aaaccattgg tcaggctagt cggatttccg
    13981 gtgtcaatcc agcggatata tccattctca tggtttactt ggaaggacgt agtcgttcca
    14041 tttctaaaaa caaatcaaag gacagtcact aaggctgttc ttttcgctgt atgtcagcta
    14101 tatgtcaact actttaaaat catgtgaaaa gtagcttttt tactgaattt atggtagaat
    14161 ggcaggcaga ggttagtgat gaaaagattt cgattttcga caattcactt tgtcatgata
    14221 ggtgtcattt tatttgggtt ggtggctctt gtccaccgat tttttccaat tggtgccagt
    14281 acagtttttg cgctactcat cagcctattg gtgttgattg cgctgtttat ttatcaaaaa
    14341 cattcttatg aatttagtga gctagaacag attgaatatc tcaataatca ggcaaattct
    14401 ggtttgatga tgctcttgga taaaatgcca gtgggagtta tcaaagttcg accagatagt
    14461 aatcaggtag aatggtttaa tccctttgct gagctgattt ttgctcaaga aaatggtgag
    14521 tttgatcaaa aaaaactacg tgaaattatt gacgttggtc tggatgagga gcgaatttat
    14581 gcaaactttt caggcaagag atacgctgtt aacgttgatt ttgatcaagg gttattttac
    14641 ttttttgatg cgtcgacaga gtattcagcg acaaatagtt tgatcggaag ccgtcctgtt
    14701 atagggatta tttcagttga taactatgat gagcttgagg atgctgtaac tgattctcaa
    14761 attagccaag tcaattcctt cttggctcaa tttgtttcgg aattttgcca tgattacggt
    14821 atctactacc gacgcggcac aatggatcga ttctatttct ttacagatta tgctgtgttg
    14881 gaaaaattga tagagaataa gttttcagtt attgataagt tccgcgagga ggctaaaaag
    14941 ttagatttag gtttgacttt gagtatggga ttggcgtatg gtaatgaaaa tcatcaccaa
    15001 atcggacagg ttgcgctcca aaatctcaat atggctgagg ttcgtggtgg agaccaggtt
    15061 gtggtcaagg aaaatgatga gagtaaacag ccacttttct ttggcggtgg ctcggcttct
    15121 tccgttaaac gaacacgtac gcggactcgt gctatgatga ctgctgtatc agataaactc
    15181 aaatcggttg atgctgtttt tgtggtggga catcgtaatt tagatatgga cgcgcttgga
    15241 tccgcggtcg gcatgcagta ctttgctcaa aatattatga acaatgccta tacggtgtat
    15301 aatccagatg aaatggcacc agatattgca cgtgccatca agaagttgag tgatgaaaat
    15361 tgttctaatt tgctaacggt tgaggaagcc atgaagatgg tcactttcca gtcgttgtta
    15421 atcatggtag atcattcaaa gattggcttg actttggata aggatttcta tgaccaattt
    15481 acccaggttg tggtggttga tcatcatcgt cgcgatacag atttcccaaa taatgcagtt
    15541 ttgacttata tagagagtgg tgctagttct gcgagtgagt tagtaacgga attaattcag
    15601 ttccagaatg acaaacacca taagcttaat cgcattcaat ctagtttatt gatggctggg
    15661 attatgcttg atacaaaaaa tttcacctct cgtgtgacta gtcgtacttt tgatgtggct
    15721 agttacttgc ggactcgtgg tagcgatagc ttggaaatcc agcagattgc tgcgacagat
    15781 tttgaggaat atcgtcaaat caatgaactg attttaagcg ggcagagaat tgaggccaat
    15841 gttgttattg cgtgtgcaga tgatactaaa gaatacgata atattattcc gagtaaggct
    15901 gccaatacaa tattggacat ggcaggaatt gaggcggtat tcgttgtaac aagaaatacc
    15961 aaagggtatg tatctatttc tgcaaggagt catagtaaaa tcaatgttca acgcatcatg
    16021 gaagaaatgg gtggaggtgg ccactttaac ctagctgccg ctcaggtata tgaccagaca
    16081 atcgcagaag tatgtgaaaa gttgacggat aaaatccgtg aagaaataaa tggaaattag
    16141 gagaacagat atgaaagtaa tctttttagc agatgttaaa ggtcaaggta aaaagggtga
    16201 gattaaggaa gttccaacag gttacgccca aaatttcttg atcaagaaaa atttggccaa
    16261 ggaagcaaca aaccaagcaa tcagcgccct tcgtggtcag gaaaaatcta aggaaaaggc
    16321 tcatgcagag atgattgcag aagcagaggc tatcaaggct aagttggctg aggaagctac
    16381 tttagtgaaa tttgtcgaaa aagttggtcc agatggccgt acctttggtt ctattaccag
    16441 caagaaaatt gctgaagaat tggacaagca atttggcatc aagattgata aacgccatat
    16501 tcagctggat cacccaattc gtgcgattgg tctcattgat gtaccagtta aaatctatca
    16561 agatgtaata ggcatcatta atttgagtat taaggaagct taattattta tctagccagt
    16621 gaggaggtga gatcttggca gagttggatg aattgcgggt gcaaccgcag gatattctag
    16681 ctgaacaatc ggtattagga gctattttcc ttgatgaagg caagctggtc ttcgttcgtg
    16741 aatacatcga agctgaagat tttttcaaac atgctcataa gctaattttt aaagctatga
    16801 ttgctctttc tgatagaaat gaggcaattg atgcgactac catgcgtaac tatttagtga
    16861 accatggtga tttggaaaat atcggtggtt tggcctattt ggctgaaatc attagttccg
    16921 tgccgacggc agccaatgcg gaattctatg ccaagattgt tgctgaaaag tctaatctcc
    16981 gtaaactgat tgcccgtttg acggatgcag ttaatcaggc ttatgagggt gcggatggtt
    17041 cagatgacat tattgccaat gctgaaaaag ctttgattga tgtcagtgag ggagccagtc
    17101 gaagtggttt caagcggatt gatgatgtct tgaatatcaa ctttgacaac cttgaaactc
    17161 gtgctaaaca gacgtcggat attacaggga ttgcaactgg ctatcctgct cttgatgcta
    17221 tgacaacggg tctgcatgag gaagagttga ttattcttgc ggctcgtcct gcggttggta
    17281 agacggcttt tgccctcaat attgctcaaa atatcggtac aaaactgggt ttgacagttg
    17341 ccatcttttc tttggagatg ggtgcagaaa gcttggttga ccgtatgctc gcttcagagg
    17401 gagttatcaa ttcgagggct attcgtacgg ggcatttgac gcaggaagaa tggaataagt
    17461 acatggtggc tcaagctaac ctggctcggg ctagtatcta tattgatgat acaccaggta
    17521 tcaagattac agagattcgt tcgcgttcac ggaagttggc tcaggaaacg ggcaatctgg
    17581 gtttgatctt gattgactat cttcaattaa ttacgggaac aggtcgggaa aaccgacaac
    17641 aagaggtttc tgagatttcc cgtcagttga agattttggc caaggaattg aaagttcctg
    17701 ttatcgccct cagtcagttg tcgcgtggtg tggaacagcg tcaggataag cgaccagttt
    17761 tgtctgatat tcgtgaatct ggatctatcg agcaggatgc ggatatcgtt gccttcctgt
    17821 atcgtgatga ttattatgag cgcggtgagc aggaagacgg tggtattccc aataatacgg
    17881 ttgaagttat catcgagaaa aaccgttccg gtgcgcgtgg taccgtggaa ctgatgttcc
    17941 aaaaagaata caataaattt gcaagtattt ccaagaggga ggatggatag agaatgagtg
    18001 atgcatttac agatgttgct aaaatgaagc aaatcaaaca agatattaaa gaccatgagg
    18061 gacagattgt cgagttgacc cttgaaaatg gtcgtaagcg tgagaagaat aagcaggggc
    18121 gtattgtaga ggtttatcag tctctcttta tcgttgaatt tgaagatcca aacaatacct
    18181 ttgtggaatc ttatacttac tcagacattt tgacagaaaa gattttgatt cattatttgg
    18241 attaatcgct atataaggct ttacagagcc ttttttttgt gctatactga tatttgtgtg
    18301 aaataacagc agggcaaaat gaagctcgtc aacagaaggt cagcaagaag agtaatcgtt
    18361 gctgtttcga tgaaggcctc ctgcacgaat caggtttgct taaaacgtta tttcctacaa
    18421 ataattttta tattttattt taggaggaca taactatgtc acgttataca ggaccatctt
    18481 ggaaacaagc tcgtcgtctt ggcttgtcat tgacaggtac aggtaaagaa ttagcacgtc
    18541 gtaactacgt accaggtcag cacggaccaa acaaccgttc taaattgtca gaatacggtt
    18601 tgcaattggc tgagaaacaa aaattgcgtt tctcttacgg tttgggtgaa aaacaattcc
    18661 gtaacttgtt cgtacaagct actaaaatca aacaaggtac tcttggtttc aacttcatgc
    18721 ttcttttgga gcgtcgtttg gacaacgttg tttaccgtct tggtttggca actactcgtc
    18781 gtcaagcacg tcaattcgta aaccacggtc atatccttgt tgacggcaaa cgcgttgaca
    18841 tcccttcata ccgcgttgaa gttggtcaag tgatctcagt tcgtgagaag tcaatcaaag
    18901 ttccagctat ccttgaagct gttgaagcaa ctcttggccg tccagctttc gtatcattcg
    18961 atgctgaaaa gcttgaaggt tcattgactc gcttgccaga acgcgacgaa atcaacccag
    19021 aaatcaacga agctcttgtc gtagaattct acaacaaaat gctctaagat ttgtatcgat
    19081 aatttaaaag ccctatttac aagggctttt tgtctgtatt tgaggagggg attatgtggc
    19141 gtaagtattt tttactagtg ctattagcta ttttggtcgt aggtggggcc ttctttctat
    19201 ctcaatcagc ggctacgcca aatgaatcag actatgtgaa ggctgtaaag agttaccagg
    19261 ctatttcgat agatgaagtg gagcaaaagg tccaagacga ggaagaattt atattataca
    19321 taggtcgtga gacatgccct tattgtcgtg attttgttcc gaaattaaca gaggcagtag
    19381 agcgatcacg tgcgactatc tactatttgg atagcgagtc ggatccgaat ggaaaaatac
    19441 aacaatttcg acagagtcaa ggtcttgcta cggttcctag cctaacctat tataaatcgg
    19501 gtaaattatc tggaatactt cgtaaaggga gtcaagcaac gctatctgaa atagagaatt
    19561 ttttagctct tcaagggcag taaatagttt taagaatgta tgaagcgaat atcatacatt
    19621 tttttgttca tgtttgtgaa aatatttcaa aacagattga aaaacatttc acaatcttgt
    19681 ataatactaa tatcagataa aaattggagg tttatatgaa aaagaaagct tggttaggct
    19741 tattaatgag tctacttgct gttttgtttt tagtggcgtg tggaggtaag tctgaaaaga
    19801 cagctacatc ttcatcatct acgacttctt cttcatcaga agaagctgtt tcaggtgcat
    19861 ctgagaaagt ttatacagat ccatctgagt tgaaagatag ctacgatgtt atcgttgttg
    19921 gttcaggtgg tgcaggtatg tcagcagcta tctcagctaa agacgctggt gctagtgttg
    19981 ctctcttgga gaaaatgcct gttattggtg gtaatacggc taaatcatca gctggtatga
    20041 atgcttcaca gactaaattc caagaagcgg aaggtattgc tgatacaaac gataaattct
    20101 acgaagaaac gcttaaaggt ggtaaaggga caaacgatcc tgaattgctt cgttatcttg
    20161 tagataactc tgctagtgca attgactggt tggatggaat ggggatcact cttagcaacc
    20221 taactacaac tggtggtatg agcgagaaac gtacccaccg tccagcagat ggttcagctg
    20281 ttggtggcta cttggtaaat ggtctttacc acaatcttgt tgaacgtaaa gtaccaattt
    20341 ttgtcaatgc agatgttaca aaactccaag acaaggatgg agcagtgaca ggtgttgaag
    20401 tgaagattgc tggtgaaacg aagcaaatct cagctaaagc agttgtattg gcgacaggtg
    20461 gtttcggtgc tgatttggaa atggttgcta aattaaaccc agcattgaaa ggttatgtaa
    20521 caaccaacca agaaggttca acaggtgacg gtattgcact tgctgaatca gaaggtgcag
    20581 caactgttga tatggaacaa atccaaattc acccaagtgt tgagcaagaa acttcttact
    20641 tgattacaga agcagttcgt ggcgaaggtg ctatccttgt caactcaaaa ggtgagcgtt
    20701 ttgttaacga attggaaact cgtgataaag tttcggcggc tatcaatagt ttggatccaa
    20761 actatgctta tgttatcttt gatgatgcct tgaaagatcg tgtgaaggct attgctcaat
    20821 acgaagaaaa aggtcttgta aaaacgggtg ctacacttgc agatttggct aaagaaattg
    20881 acctacctgc ggacacactt caaacaactc ttgatacttg gaacaaggct gtggcagata
    20941 agaatgatgc ggcatttggt cgtacatcag gtatggacca tgctttgaac actggttctt
    21001 accatgccat taaagttgca cctggtgtcc accatacaat gggtggtgtg aaaatcaata
    21061 ccaatactga agtattgaaa acagacggtt cagcaatttc tggtctttat gctgctggtg
    21121 aagtaactgg tggtgttcat ggtcaaaacc gtattggtgg taatgcagta gcagacatca
    21181 tcgtatttgg tcgtcaggct ggtgaacaag cagctggatt tgctaagaaa taaattgtag
    21241 acataagagg ctcggcagaa agaaggtcga gcttcttttt cttgtccctc tatctctaag
    21301 atgatatact tttaaggtat gaagaagaaa atagtattat tgttaggagc tattgcagtt
    21361 atagttttga cttggtctgc tattgctggt cagcgtcagc aatcttatgc cgaggctgaa
    21421 ttaagggacc aggataaaat ctggattatc actgatttgc attatttgtc acaggattta
    21481 tttgatgatg gagaggcatt ttcttatatc gaaaagacag ctgctggcaa ggatttacgt
    21541 tatggaaaag agcggatgga ggctctggtt gagcaggttg ggcgtgaaca tccttccttg
    21601 ttactagtca gtggagattt gactcttaat ggagaaaagc agagcatggt tgaattagct
    21661 cagtatttta cagagattga agaacaagga actgaggttt tggtcattcc tggcaaccat
    21721 gatattgcca gtggatgggc tagggccttt aagggagacc agcagatagt gacggatcag
    21781 gtcaccgctc agcaatttgc agagctattt gcccatcacg gttatcaaca agctagcagt
    21841 cgtgacaaag cctcattgag ctacctggcc aaaccatttt caaatgcttg gtttctgatg
    21901 atagacagca atatctactc tgacggctat ggaaaaggag ctcctccaac caatggacgt
    21961 atcaataaag agactctaga atggatagaa attcagcttc aagcagccaa ggaaactgga
    22021 gtgagcctga tacctgttgt ccatcacaat gtcttgcaac agcatgccat gctttcaaaa
    22081 ggctatactt tggataatgc tgctgatttg aagaccttgt tcaatcaata tggcattcaa
    22141 tttggttttt cagggcacac tcattctcag aatattgtta aggaagactt gggacaagtt
    22201 aactatactg aagtagtcaa tggagcattt tctatttatc cagctattat cggccaattg
    22261 agccttgatg atacaagcat tcattatcaa aaaactcaac ttgatatggc ttcgtgggca
    22321 gataagcacc aacctagtga tccaaatttg caggatcacg ttacctactt acaaactgtc
    22381 tttgacaata ccagtgacat catggtccac aatatgttaa acgatgaagg ttggtatgat
    22441 ggtgaaacag cagatgctat ttcacaattt atcatgccgg ccaaccgtgc ttatttttca
    22501 ggagaaaaac tagatcagac ttggctagat gagaaggtat ttccaagcca ggcttatcag
    22561 accttgcaag cagcatcacc gagaagtttc ttggctgatt atcttgatgt gattataaaa
    22621 cggagtcaaa atagggatgt agaaaaacta gtgcttaaaa cagaaaaaga ttttgtccaa
    22681 tagttttcca cagattgttg aaaaaaacca caacttatcc acaagctgtg aataagttat
    22741 accgtagtaa ctatccgagt aggtttgttt ttacaaacaa aaatactcag caactttcct
    22801 gaaaatgtga taaaatagta acaaattgtg tcaaatggag agaaagatga ccttactaag
    22861 cattgctatt ccgagttata attcggaggc ttaccttcat tactgcgttc attcccttgt
    22921 aatgggtggg gacaaggttg aaattctgat tattaacgat ggttcgtcag accgaactca
    22981 ggaaatcgca gaggagcttg ccaatcaatt ttcaaatgta cgggctattt atcaagaaaa
    23041 taaaggtcat ggcggagctg tcaatacagg gatacgtgag gccaagggga agtactttaa
    23101 agttgtagat tcagatgact gggtcgatac cagggcctat ttgaagatcc tagagagttt
    23161 gcaggctttg gaagatgaaa atacgccagt tgatgccttt atctccaact ttgtttacga
    23221 aaaagaggga caatctcgca aaaaatccat gtcttatcaa tccactctac ctgagaaccg
    23281 tatcttcggt tgggaagacg tgggggcatt ttccaagggg caatacatga tgatgcattc
    23341 cttgatttac aggacagatt tattgcgtga ggttggtctc gttctgccag agcatacttt
    23401 ttatgtggat aatattttcg tatttactcc tttgcaggct gtgaaaacga tgttctatct
    23461 gccagtagat ttttatcgtt actttattgg gcgaaacgac cagtctgtca atgagtccgt
    23521 catgattaag cgcattgacc agcagttaaa agtcaatcga atcttggtag ataatttaga
    23581 cttggaggcg attgacaatc ctgatttacg aagttatttg ctcaatcatg tggagattac
    23641 gaccattatc tcctgtgccc ttctcaatcg tgcaggaaca gctgagcata tgatgaaaaa
    23701 gcaggaatta tggcactata ttcgggataa caatccagct ctctttaaaa ttgttcgtaa
    23761 agggttactc gggcaattaa ccaaccttta cggttaccca ggtcgaaaaa tttttaatgc
    23821 cgtctataaa atcgcgaaaa gaatttatgg ttttaactaa aactcagttt cggctgagtt
    23881 tttctgttat aataaggaat atgaaaagcg tttacaaagg agaagataaa tgcaaagatt
    23941 aggacaaaca ggtctagaag tttcacgaat tggtctaggt tgtatgcgaa tggctagtct
    24001 gacagagcag gaaactgcta aagtgttaga tacagtcgtt ggacagggaa tcaacttttt
    24061 tgatcatgcg gatatttatg gtggtggtga atcagaaatc cgttttgctc agggggcaaa
    24121 attggcggga ttgaaacgtg aggacctgct tctccaatca aaatgtggca ttcgcaaggg
    24181 ttattttgat ttttctaaag actacatctt ggagtcagtg gacggtattc tcaagcgctt
    24241 ggatacggaa tatttagacg ttctcgcctt acaccgtccg gatgctctaa tggaagcaga
    24301 ggaagtggca gaagcctttt atctcttgaa aaaagcaggg aaggttcatc attttggcgt
    24361 cagcaaccaa aacatttacc aaatggagtt attacaatcc tatttcgatc agcccctagt
    24421 agttaatcaa ttgcagctct ctcctgctca cacgcctttg attgatgctg gattacatgt
    24481 caatatgaaa gatgatgctg cgactatgcg tgatggtgga ctgattgatt attgccagct
    24541 taaaaaaatc actattcagg cttggtctcc tttcttgatt gatttgcaac gaggtatttt
    24601 tgccaatcat ccaaactatg ctcttttaaa tcaaactatt ggagaaatag cagagcgata
    24661 caatgtttca catgaaacaa ttgtcgtggc ttggattttg cgtcatccag caaagattca
    24721 aaccattgtt gggtccatga atccggagcg cttaaaaaag attgcacaag ctagtcagat
    24781 tatcttgact agaccagaat ggtacgacat ttatagaagt gcgggcaata ttttgccgta
    24841 ggaggcaact atgcagtggg aaataaaagc atttgaccaa cttagtttac aagaacttta
    24901 cactatcttg acgcttcgga ccgatgtgtt tgtcgtggaa caagcctgtc cctatccaga
    24961 aatagatgga aaagatccaa gttgtcttca tcttttagga acagacaatg gggagttagt
    25021 ggcttatttg agaatcttgc cagctggtct aagttatgat gaagtttcca ttggtcgtgt
    25081 ggtcatcaag ccaagccatc gtggtaaagg attgggtcgg ccaatgatgg agcaagctat
    25141 cgcttacatt acaaccgagt ggaaggaaag tcagattaaa atcggggccc aagcctattt
    25201 ggaaaaattc tatcaatcgc ttggcttcga acctatttct gaagtatatt tggaggatga
    25261 tatcccacat ttggatatgt tataccgtaa actagtcgtt taaggctggt ttttcgattt
    25321 ttctcggcaa tttcccccaa aaatcagcca ttttatggta gaatgaatag gtataaaatc
    25381 agtaaaagag gaagaaaatg aaacgttcta tgtacgctgg acgtgttcgt aaggaacatg
    25441 tcggacagga aattactttg aaaggttggg tcggccgccg tcgtgacttg ggtggcctga
    25501 ttttcattga cttacgtgac cgcgaaggca ttatgcaatt ggtgattaac cctgagtcag
    25561 ttgaagctga agtgatggca aaagcggaga gtcttcgttc tgaatttgtt atcgaagtaa
    25621 caggaacggt tgtggagcgt gagcaagcta acgacaatat cccgacagga gctgttgaac
    25681 tgcaagtaac cagcttgaca gtgttgaaca cggctaagac aactccattt gaaatcaagg
    25741 atggcattga agccagcgat gacactcgtc ttcgttaccg ttatttggat cttcgccgtc
    25801 cagaaatgct caacaacttc aaattacgtg cggctgtaac ccacagcatt cgtaactacc
    25861 tagacgagct tgaatttatc gatgtggaaa cgccaatgtt gaccaagtca acgccagaag
    25921 gtgcgcgtga ctacttggta ccatctcgtg tgtccaaagg tcatttctat gctttgccac
    25981 aaagtccaca gattactaag cagcttttaa tgaacgctgg ttttgaccgt tactaccaaa
    26041 tcgttaagtg tttccgtgat gaagatttgc gtggtgaccg ccaacctgag tttacacagg
    26101 ttgacttgga aacctcattc ttgaatgagg ttgaaatcca agacatcgta gaaggcttga
    26161 ttgctaaggt cttgaaagat accaaaggaa tcgatgtgac cttgccattc cctcgtatgg
    26221 cctatgacca tgctatgaac ttctatggtt cagacaagcc ggatactcgt tttgagatgc
    26281 ttttgcaaga cttgacagaa cttgtcaaag aagttgactt caaggtcttc tcagaagcac
    26341 cagttgtcaa agccattgtg gtcaagggtg cggcggattg ctactcacgt aaagatattg
    26401 ataaattaac agactacgca aaacaatttg gtgctaaggg acttgcttgg gttaaagtag
    26461 acaagggaga attagcgggt ccagttgcta agttcttgac gggtattaca gaaaacttga
    26521 cagcaagttt acaacttgaa gacaaggact tggttctctt tgtagcagat gaattggaag
    26581 tagccaataa taccctggga gctttgcgta accgcttggc aaaagagcaa ggtttgattg
    26641 acgaaagtaa gttcaacttc ctctggattg tagactggcc aatgtttgag tggtctgaag
    26701 aggaaggtcg ctatatgagt gcccatcacc cattcacctt gccgacagaa gaaacagctc
    26761 atcatttgga tggtgatttg gcgcaggtgc gtgcagttgc ctacgatatc gttttgaatg
    26821 gttatgaatt gggtggcggt agccttcgta tcaaccaaaa agacatgcaa gaacggatgt
    26881 ttaaagcgct tggcttctct gctgaggatg cccatgagca gtttggtttc ttgcttgaag
    26941 ctatggacta cggcttccca ccacatggtg gattggctat cggtttggac cgctttgtca
    27001 tgttattggc tggtgaggat aacattcgtg aagtaattgc ctttccgaag aacaacaagg
    27061 catctgatcc gatgacacag gcaccgagca cagttgcatc agcacaatta gaggaattgg
    27121 ctttaaacat tacacttgaa aatgaataaa tttttcagaa aacagcgtgt acgcttttta
    27181 agaaaggcca gaaaaaataa gttttggtcg gtcattttgg gaatttctcg ggaaaaatat
    27241 gccgaacgga tatcggggtc cattatttat ggactcctat ctagtattgc agtcaatttt
    27301 ttctttagac cagggaatgt ttattcgtct ggagttactg gtcttgcaca gattgtttct
    27361 gctctggcag cttcttacgc tggttggaat gtaccgattg cggtggtcta ctacggcctg
    27421 aacattccct tgcttatctt agcttggtat aaaattggtt ataaatttac tatctttacc
    27481 tttattacgg tatccttcag ttctttcttt atccaattta tgccgccagt taccctgacg
    27541 acggatccgt tagtaaatgc tattttcggt ggtcttatgc tgggaactgg gattggcttt
    27601 gcacttagga acaatgtatc cagtggtggt actgatattg tctctatcat tattcgcaag
    27661 aagacgggac gtcaagttgg ctccatttcc ttgattgtca acattatgat tatgttgatt
    27721 gcagggatga cctttggctg gcaatatgcc ctgtattcaa tggttgcgct gtttatctcc
    27781 agtcgcatga cagatgcgat tttcgtgaaa caaaaacgga tgcaggccat gattattacc
    27841 aatcatcctg aacgtgtcat taagaaaatc cataagaagc tcaatcgcgg tgtgaccatt
    27901 atcaacggtg ctgagggtgc ttataaccat gagcaaaaga cgattctcat taccatcatc
    27961 actcgtgcgg agtttaatga tttcaagcat attatgaaaa aggcagaccc caaagccttt
    28021 gtatcggtag ctgacaacgt caatattatt ggtcggtttg tggaaagcga ctgattgaca
    28081 aacactacat gtaggagtaa aatagtattt acagtctaca tgtagtgttt ttattataaa
    28141 gaggaagtgt atgaagaaga aaatatattt ggtttacatc agtttgagtg gcaatacaga
    28201 gagttttgtg aaacgtctaa agtccttttt ccaatttcaa actgactggg agattgagct
    28261 agttcatgtt aaagatttgg tcaagcagga tattcctttc tatcagctag atgcaccctt
    28321 tgtcgccttt ttaccaacct acttagaagg tggaaatgga gtggacaatg gagatgtgga
    28381 aattctgacc aatcctctcg gagattttat cgctttgggg accaatacag agctctgttt
    28441 gggtgtcgtt ggctcaggca accgcaattt taacaaccaa tattgtctga ctgccaagca
    28501 atatgctgag cgatttaatt ttcctgttat agacaccttt gaactcagag ggatgcagaa
    28561 tgatattgaa cgcattggtc ggaagataat ggaattgatg taaagagcct caactcagct
    28621 ttatgctggg ttgttttttt ggtcacacaa aaaaactcac cagcgtgacc agtgagtttt
    28681 aaggagatta tgaaaaatat ttaggattga ctatagtata cctcagacta tatcgtgttt
    28741 catcggtcta aagtcctatt tgtcttctaa aatgcaaata ctctgtcctg caatcgtgat
    28801 ttcttgctga tcacgatttt cgactggagg atagttgtag agaactgcct tatctttttc
    28861 acgttcatag gtaaagtcgc tatccgcaaa gttgatgata aattgaatgg tcttttcttc
    28921 acttgtcact tgatagcgaa gaacatattc agttaaccag tagaaatcac aagtttcttg
    28981 gatactttcg tagttatcct ggctgagtat tggattattt ttgcggaagg taattaattc
    29041 ttgaatgaac tcgatatgtt ccttataacg aatagctcgt gtccagtcca gacggttgat
    29101 acggtcaggg acattgtaag tattatctat ttcatctttt gtacggaaaa attcctgtcc
    29161 gctgtgaatg aaggccatac cctgagagat taagatgagc tggagaccaa aacttgcagc
    29221 acgtttctgc tgttgaggtg tccagtttgg attctcaata tggaaatagt caaatgctgt
    29281 agcattatcg tgacattcga tgtagttgag ggactgttga ggcgttaaga aatggcttaa
    29341 tcggctacca gtcaggagat gttgtacctt ttcgtgcaat tgcttatcta ctagacggtt
    29401 tggattgagc aagagtttct taaaggtatc acggtaatcg tcattgaaga agctgatttc
    29461 aggtaaatgc tctgcattgt actggtgagc cagcttttca aattcgaggc ctgttgccat
    29521 tttccatcct tcaccataga ggtagacatt tgggtgaatg gcagataatt cagtttgaat
    29581 ctggttgatt gtttcgctat ctaaaatacc cataaggtcg aaacggaagc catcaaaacc
    29641 atagagttct agccattggc gaagggattg tttgatgtag ttgcggacca tactgcgctc
    29701 actggcaacg tcgttaccgc agaatgtccc gtctgttcgc atgccgtggt catcatagcg
    29761 atagaagtag cctggaacga tgagctcaaa tgcgtacttt tcagcatgat agacgtggtt
    29821 gtaaacaacg tccataataa ctgaaatatc tgcatcatgg taggcctgga tagcttcttg
    29881 tagctctata atacgtgcgt aaggatcgtt tggttggcta gaataggaac cttctggcag
    29941 attgtattgc ataggatcgt agccccagtt gtaaacagct tggggtttat tttcatccac
    30001 actgccaaaa tcataaacag gcaataattg aatatgggta acgcctagtt ctctgatgta
    30061 atccattcct agcttcattc catccatggt aggagactct gtcaatccga gaaattgact
    30121 gcgatgcttg aaaccagctt ctttttgcca tgagaaatca cggacgctca tttcatagat
    30181 aatggcctga gagataggtc gttgtgtctt agcacgacga attttatgaa gtttatctgg
    30241 attgataacg tagctgtcac ctgagttggt tgtggaagac agggcgtagg gatcgtgaac
    30301 ggaaatccat tcaccgttta ctttgtggag atagtgatag ctgtgcgctt ctaggtctcc
    30361 ttcaacagta atttcccaaa ctccttttgc tcccttcgtc attgcatgtg ggtttccttc
    30421 tagaacaaga aaaacttgct tagaaatagg tgcccataac ttaaaggttg ttgcctctgg
    30481 tcgataggtt gctcccaaat cttggccatt gtatgtataa ctttgttcaa aaagtgtaga
    30541 gcgaacgata tgaccatagc cgagttcagc tttattacgg tcctggtcgt agatggtata
    30601 gtccttgtcc aatgtcaatg catggaggct ggttagataa tagataacga gattgtctac
    30661 ttctagacag gaatggataa aaagttgaga cgtagcatca tttgattcga gtgagaagct
    30721 catatgttcg gagtcgaatc gtttttccat gaccaagcga atagttgcta catcatcaag
    30781 gaatgcttgg aattgtcgta atgccatgag ccaaaaggct cctttctaag ttagagttcg
    30841 gtgatggtat gtggaatgac acgtcggtag cagacttgct tgtcttcctt gttgtcattg
    30901 atgatttggt gcagagtgtt gaatgcgacg cgtcctagtt taatagcgtg gacgtcaacg
    30961 taggcttcaa tatctagttt tggcttgacg gagtcaaaag aaatgatagg aagtttgact
    31021 ccgacttcgt tgagatattt gacaacacct tcggcaacgg aagtgtcggt tgtgacgatt
    31081 gcatccaggt cttgtttgag taatttctta gaaattttgt aggcactgtc ttcgagaagg
    31141 aagccagaca caaacttgac cttgttttca tccaggggaa tattgtgcga tttaagggcg
    31201 ttcttgtaac cagtataacg gtcttgagat acgaccaact ctttgttacc agcgacgaag
    31261 gcaatgtttt tgtaaccttt attgatgaag tagttggtag cttcaaagcc ggcctggata
    31321 ttatcattat caactagtga tatgaatgga gaatccgcct taccaagaat gaggaagggg
    31381 aatttgtgtt ggatagctaa ttgtaccaat ggatcgtcgg gcttggaata gaggaagatg
    31441 aggccgtcca ctcgtttgcc gtagaccatc tgagaaatcg cttctagacg ttgttcttca
    31501 ttctttcctg tggagatttg gatggcataa ttatgatctg ccgcaacttg agaaattcct
    31561 cgtaatgcag tagggaagaa ggggttttga tagaaaacat ccgagtcatc tggcaaaact
    31621 agtccgataa cctgtgtata gctagaaact aggcttcgag cgttgaggtt tggatggtag
    31681 ttgagatccg ccatggcttt cctaaccaag tctttcgttt tttggctaat ggcagagcta
    31741 ttttgaatga cacgagtaac tgtagatggc gagacaccag ctaattttgc cacatctttg
    31801 atggtagcac gcatatagac ctcctagatt tcatctctga attttgtttt gaaaaatacc
    31861 cataacaagc atagtacaaa taggatattt tgtatggtta gaagggtagt cacaggttga
    31921 ccaaatagtc caattagaca ggctataaga gtaggcaggc ccagacagtt gagagcaaaa
    31981 ttatagcact ctgcaaacgt ttcaaaatgg aagaaacgag actttttagt caaaaagagg
    32041 aagaagctgg ctcctagtag gatgaagagt aggtttgttg ttaaaataaa ggtcgaaata
    32101 agagtgatgg acagtccgac agctgctcgg ttggcttgat accatttttt agagatggct
    32161 gcagttaatg cttccttact agcaaaatcg tcagtattca aaccttcata agtcaattcg
    32221 cttagaatat cacttccttt acgaatagtc agagactgat tggcgaattg ataagtaaag
    32281 tcagaactag agctaacggt atcaccaaat gtcacttgct cccagttagt atttccagta
    32341 taggttaggt ggttgttttc gatgactgca tgttgacgga ggtcatctac gacctgatct
    32401 gtcagaggtg catagatacc ttctacgaaa ttttctaaag gataggtttc gagattgaca
    32461 gtctgtaggg agctcggaat gagcaagagc gccactaaaa aaagcgttgt aaacaaccgc
    32521 tgccaaaggt tcattagtct acgattggca aacatatttc ttggagagaa gatactagaa
    32581 aaataggaaa aaggatatgg gagcattcgt tggacctttc ataaatatca atgtttcccc
    32641 taaaaaggga aaaggtggga cagggttatc ccttgtctcc accgcttgtt aaaccagata
    32701 caaagttctt ttgtaggaag aagaatagga tactgatagg gagggcaata agaatggcac
    32761 ctgccgcaaa gtaggcaatc ttcatatttt tcacatcact gatgaaggtt tgaagtccga
    32821 cagctacagt atagaattct ttttcacgaa gcaagaattt ggataggatg taatctccaa
    32881 aaggtcccat gaaggcccag agcgcttgta cagcaatcat tggacgaacg agtgggagga
    32941 cgatttgcca gaaacgtctg aagtgaccgg caccgtctag ttttgcagat tcatcaagtg
    33001 agattggcac cgtatcgaag tagcctttca tgagccaagc gttcattggg ataccaccac
    33061 cgacataaag gaagatgagg aaccagcttt ggttgagcgc attgagcatg agggccataa
    33121 cgaagaaggc ggtaagagca gccatggttg gtaccatttg gataatcaag aagaagacca
    33181 aactctgctt acgagcgatg aagttatagc gactataagc gtaacccgct agtaccacta
    33241 tacttgtttg aataaccatt gtcaagagag caatgataag cgtattgaag taccaggttc
    33301 cgtatagagt ctcgctaaag agcttgctaa aattgtctag tgtaaagttg atattgctat
    33361 ccaatttgaa ggcaaccacg ttaccagact tgaaggcgga catgattgta atcaagagag
    33421 gatagatgat gataacagac agaacaatca gatagagata ggttaaggtc tgattgagta
    33481 tgcgtctagt ctttacagat actttcatct tatacatcct ccatttcaaa agcatttagt
    33541 tttttgaagg caatcatgga aatactgatg acaatcattg agataatcaa tgtaactgct
    33601 gccgccattg agtattgagg tgatgtacct gtggttaatt tataaatcca tgaaatcaag
    33661 atgtcagttg aacccgctcc accaccgacg ctaccaggac caccattgtt gaagaggtag
    33721 atgatagaga agttgttgaa gttgaaggtg tattgactga ttagtgttgg agctgctact
    33781 gctaaaatca tcggaagggt gatgttacgg aatttttgaa tggcacttgc accatcaatg
    33841 taagcagctt catacaagtc gtttggaatg gattgcaaaa tacccaaggt caaaacatag
    33901 atataaggga aaccaagcca agcctgcatc ataatgaggg caactttagt ccagaatggg
    33961 tcggtcttcc aagggataag gaaattatcg atgaatggta ggaatttgct caggaatggc
    34021 aatacctgtg tgttaatagc gccgacacta tcgttgaaca tgttactaaa agtcaagata
    34081 gttacgaagg ccggaacagc ccatgggagc aagaagataa caccgaagat acgttttcct
    34141 ttgatgaatg gttgatttgc gatgatggct gtcaagatac cgataacaat ttgagctgtt
    34201 gaagcgcaga gtgcccagat aattgtccag ccaagtacag aaccaaatgc tgtacggaat
    34261 gtgcttagtt tccagatatt tgtaaagttg gtaataccaa tccaatccaa caatgcgctt
    34321 ggtggcaggt gtttgaagtc gtagtttgta aaggcgataa acaatgtaac gacaactggg
    34381 aagatgatag caaaggtcat cgcaatatat gatgggataa tcaagagata tgggaaacca
    34441 ttctcataga taccttttac catttctttt aatgtggtag ccactggcat ccctgaattc
    34501 catcgtttcg cggtatcacg tgcgtctttt aggttgagtg catagaaagc gagatagaca
    34561 actgtgataa ttaagtggaa agaaccacga atcagcatga atagcgaatt atcttgtcca
    34621 cgaacactac cgagggtaat caagttgcct aattcaccag ctgcaatagc aataaaataa
    34681 acaaggaagg caagcgtaac acctaaaaag atgtatcctt tggctttttg tttattgtag
    34741 atttgtccga gaccagggat cagggacaaa aggagtgcct tacctggatt ttgtttcata
    34801 gtcatagtct ccttatatag cttctgaata gacggtggat gttatcgtca tttagttttt
    34861 cttttattac ttcgttaact cgccttgcct aacttcagtt atgcctgcgg ctcattgcct
    34921 cgtactaaaa gtaaactaaa agactatatc tattcagttt atcgttaagt aataaagtag
    34981 actgggaaga gaactcccag tccaacttta aacttgacta gttgctgtgt ttttgagcaa
    35041 tttcgtctgc aatagctttc acagcgtctg ttgcagcagt cttagcgtct tttgaaccac
    35101 ttgcagcttc gaagagcatg ttaccagctg gtgtccaaac tgaacccatt tctgagatgt
    35161 ttggcattgg ttgagctgaa gcaaactggt tgataactgc agttgtcaat tcgtcttttt
    35221 tgcttacagc atattcacga gcttcagtgt tagctggaac ttcgtttgta gcgtcgtaaa
    35281 gtgctttttg ttggtctgta gcagtcaaga agtcaacaaa cttttgagcc atttcttggt
    35341 ttttagcgcc tgctggaaca acccatgctt taccaccacc gaatgctgag tagtttttgc
    35401 cgtttacaag agttggtatt gttgctacac catagtttac accagcttct ttatatgaag
    35461 ctgctttcca aggaccttcg atgatagcag ctgctttacc gtctgtaaat tgagtgttaa
    35521 tcaagttgtt tgcagcagta ccgtcttgaa gaccttgagg ccatttttcg taccaagttt
    35581 tagcgtattc aattgctttg atggcacctt cattagcaag tccgatgtct tttggatttg
    35641 taccattttc accgaataca tagccgccgt aaccagaaag aagtccgtat gtatagtaga
    35701 aattcgtcca gtcagctagg aatgctgaag ttttaccctc ttcgccagca aatgcgtatt
    35761 tgctgtcttt agcaagtgtt tcaagttctg caaatgtctt aggagcttca gtcaacaagt
    35821 ctttgttgta gtaaagaaca agtgtttcga taaccgcagg tgaaccgtaa actttaccac
    35881 cgtttgttac aagagcagtt gttgtgtcat ctgctttgct atcatctgca agtgtcaatt
    35941 cagatagttg accttcagaa ccaaggctac ctacacggtc gtatggtgcc atcataacgt
    36001 ctggggctga acctgattgg ttatccaatg ataagttatc caaaccagtt aaagcatcac
    36061 cagttttaac ggtaacagat acaccatttt ctttttcgaa gccagctttg acatcgttga
    36121 tgtaagattc ataaccttgg tcaacgtaga cagtcaattc tttgctacct tcagcagact
    36181 tagatgcttc tgttgatgaa cctgagtttg agcatgcagc taaaacagca gttgatgcag
    36241 caagaagagc aacgctctta aggagattgt gtttcatttt cttccctccg aagataaata
    36301 gttttgtgtg acgcctgctt tgcgcaaacg ttttcctaag ttgacttcat tatacaccag
    36361 attgaatccg tttgcaagcg tttttataaa aaattttaaa aatttttttg agtttaaaaa
    36421 aatataagaa t
//
LOCUS       DASGCC010000003        33618 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.003, whole genome shotgun sequence.
ACCESSION   DASGCC010000003 DASGCC010000000
VERSION     DASGCC010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 33618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33618
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.003"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(30..1013)
                     /locus_tag="U1404_000071"
     CDS             complement(30..1013)
                     /locus_tag="U1404_000071"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM5347067.1"
                     /translation="MTATKQHKKVILVGDGAVGSAYAYALVNQGIGQELGIIDINKDR
                     TQGDAEDLSHALAFTFPKKIYSAEYSDAHDADLVVLTAGLPQKPGETRLELVEKNLRI
                     NQQIVTEIVNSGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQAL
                     AEKIGIDARSVHAYIMGEHGDSEFAVWSHANVAGVKLYDWLQDNRDIDEQGLVDLFVS
                     VRDAAYSIINKKGATYYGIGVALARITKAIFDDENAVLPLSVYQAGQYEGVEDVFIGQ
                     PAIIGAHGIVRPVNIPLSDAELQKMQASAKQLKDIIDDAFANPEIAAGVKN"
     gene            1202..3646
                     /gene="gyrA"
                     /locus_tag="U1404_000072"
     CDS             1202..3646
                     /gene="gyrA"
                     /locus_tag="U1404_000072"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEM5347068.1"
                     /translation="MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHR
                     RILYGMNELGITPDKPHKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVD
                     GHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPAR
                     FPNLLVNGTTGIAVGMATNIPPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTG
                     ALVMGKSGIHRAYETGKGSIVLRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVK
                     LVQEKRIEGITAVRDESNREGVRFVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAI
                     QNGVPKILSVRQILESYIEHQKEVVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIR
                     IIRNSETDAIAQAELMEKFDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIAD
                     LADILAKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLS
                     NQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRL
                     KGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTS
                     VSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRT
                     ATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLK
                     VADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKI
                     MTFALVDAAEIKEEKE"
     gene            3653..4402
                     /locus_tag="U1404_000073"
     CDS             3653..4402
                     /locus_tag="U1404_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HEM5347069.1"
                     /translation="MSKREKKKKRKGSFWRNFLTVVLILISLALIFNTSIRNFIIGWN
                     TNKYQISNVTTEDIEKNKQAETTFDFEQVQSISTEAILAAQWDAQRLPVIGGIAVPEL
                     GINLPIFKGVFNTSLMYGAGTMKENQEMGKGNYALASHHIFGVTGAADVLFSPLDRAK
                     NGMKIYITDKTNVYTYVIDSVEIVSPESVYVIDDVEGRTEVTLVTCTDYYATQRIVVK
                     GVLESTTPYNETAKDILDSFNKSYNQYDYGQ"
     gene            4516..5196
                     /gene="radC"
                     /locus_tag="U1404_000074"
     CDS             4516..5196
                     /gene="radC"
                     /locus_tag="U1404_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM5347070.1"
                     /translation="MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPV
                     SILSNKLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKAMIELGKRINQSELLLNE
                     RILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
                     YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYS
                     FREESELF"
     gene            complement(5193..5885)
                     /locus_tag="U1404_000075"
     CDS             complement(5193..5885)
                     /locus_tag="U1404_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5347071.1"
                     /translation="MKKPVIGISGNEYKTGDHTEPLLSYTQTCLVQAIEDAGGLPLIL
                     PVTEPDLAKYYIHLIDKLILTGGQNVQPSYYREERTIDSDNYLPKRDEFELAIIRAAQ
                     ENQKPIFGICRGLQLYNVAQGGSLHQSISEHWQDIDGQEVSQTIQLTQNSPLYDIYES
                     DPSVNSFHRQAIKDLAPDLEIIALSDNQQIIEAVHSAYPTKFLGVQWHPELLYGKREI
                     EKELFHYIVNKL"
     gene            complement(5889..6527)
                     /locus_tag="U1404_000076"
     CDS             complement(5889..6527)
                     /locus_tag="U1404_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEM5347072.1"
                     /translation="MKNDKKSDIPRATAKRLSLYYRIFKRFYAGNIEKASSKEIAEAI
                     GIDSATVRRDFSYFGELGRRGFGYNVKELMDFFADILNDTSITNVMLVGVGNMGRALL
                     HYRFHERNKMKIVMAFEADDNPAVGTTDENIPIHAISEIKERISEANSQTAILTVPSV
                     KAQEVTDILVEAGVKGILSFSPVNLSVPKDVVVQYVDLTSELQTLLYFMRKG"
     gene            complement(6662..6865)
                     /locus_tag="U1404_000077"
     CDS             complement(6662..6865)
                     /locus_tag="U1404_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4649 family protein"
                     /protein_id="HEM5347073.1"
                     /translation="MIEIHYLDAYKQERIQTFENKDATILAFSGCLTLPDYYPVTSIT
                     QDGQALDYKGTIGDLYRYLQTLD"
     gene            complement(6867..7211)
                     /locus_tag="U1404_000078"
     CDS             complement(6867..7211)
                     /locus_tag="U1404_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1831 domain-containing protein"
                     /protein_id="HEM5347074.1"
                     /translation="MAFQQSVTLKDCNFTYHISPAIKKYTLRDNTFEQTKAGHYQLTR
                     LLEEIPNSNQGFLLKIIINQDLTGFKINITDKSGLHLVNIFKPESNKVIQEKFYFLMD
                     SLIDRDIFTKES"
     gene            complement(7213..8328)
                     /locus_tag="U1404_000079"
     CDS             complement(7213..8328)
                     /locus_tag="U1404_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5347075.1"
                     /translation="MIYLDNAATTALSPTALQRMMEVAQENYGNPSSIHQSGRKANQR
                     LRQSRQEIAQILSASPEQIIFTSGGSEADTLAIQGYALAHQSKGKHLITTAIEHHAVL
                     HTMQYLEERFGFEVTYIQPVDQVITAQQIQDALRPDTILVSVMFANNETGQLLPIKEI
                     GELLADHQAVFHVDAVQAIGKIAISPSNYGIDLLAASAHKFHGPKGTGFLYSKVHKFD
                     SLIHGGKQEQQHRAGTENLPAIAAMATALTEQYESLDTHHQHVSELRQHIIEGLSGLD
                     YYLNQAGPHLPHVLNIGFPGKLNEQLLMQLDLAGIAVSSGSACTAGVVQNSHVLEAMY
                     GKDSHRLKESIRISLSEINTKEEIDTLIIELKKILGG"
     gene            complement(8339..9316)
                     /locus_tag="U1404_000080"
     CDS             complement(8339..9316)
                     /locus_tag="U1404_000080"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM5347076.1"
                     /translation="MVQPLGEHNIKLFSLNSNRDIAEKIADSAGIPLGKLSSRQFSDG
                     EIQINIEESVRGVDVYIIQSTSYPVNNHLWELLIMIDACKRASANTITAVIPYFGCAR
                     QDRTASPREPITAKLVANMLVKAGVDRVLTLDLHASQIQGFFDIPVDNLLTEPLFAAY
                     YMEKGLCGEDVVIVSPKNSGIKRARNIAEFLNAPIAIIDYAQDDSERSEGYIIGDVAG
                     KKAILVDDILNTGRTFSQASKIVQEGGATEIYAVASHGLFTGTATQLLDEAPIKEILV
                     TDSVASKEQHPKNIAFLTASDLIADAIHRIQEHQPLSPLFKFTSPEKEN"
     gene            complement(9461..10027)
                     /locus_tag="U1404_000081"
     CDS             complement(9461..10027)
                     /locus_tag="U1404_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEM5347077.1"
                     /translation="MKNHLEIEYKTLLTKSEYKRLLTDFSDVSPILQTNHYIDTPDLD
                     MKNHRFSLRIRTFEDSAELTLKIPQEVGNQEYNQVLDIQTAHDLLENFQLPAGQISDI
                     ISATEIPLDKLAVWGILTTKRYEKQTSIGLMALDENDYVGQKDYELEVEVTDADAGKI
                     LFDEFLKKKSIQFKYASSKVARTAAHMK"
     gene            10114..10785
                     /locus_tag="U1404_000082"
     CDS             10114..10785
                     /locus_tag="U1404_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM5347078.1"
                     /translation="MDFNWEEFLDPYIQTVGELKIKLRGIRKQYRKANRHSPIEFVTG
                     RVKPIESIKEKMALRHIKLENLAQDMQDIAGLRIMVQFVDDIEEVLAILRKRKDMQIV
                     HERDYINNMKASGYRSYHVVIEYPVDTINGNETVLAEIQIRTLSMNFWATIEHSLNYK
                     YKGNFPEEIKKRLEVTAKIAYELDEEMRKIRNDIQEAQALFDPAYRKLNDGVGNSDDT
                     DEEYR"
     gene            10760..11587
                     /locus_tag="U1404_000083"
     CDS             10760..11587
                     /locus_tag="U1404_000083"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM5347079.1"
                     /translation="MIQMKNTGRKKIALLASRNPKSEAVSKELWTKLKEANFILTPKN
                     PDIVISIGGDGMLLSAFHKYEKLIDRVRFVGIHTGHLGFYTDYRDFEVDKLIENLKLD
                     TGARVSYPILNVKVKMTDGRIVEARALNEATVKRLSKTMVADIIINNVPFERFRGDGI
                     SVSTPTGSTAYNKSLGGAVLHPTIEALQIAEVASLNNRVYRTLGSSVVVPKKDKIVIE
                     PKHSDRYSIAVDNKTFVYDSIESIEYQIDNSKIHFVATPSHTSFWNRVKDAFIGEVE"
     gene            11587..12480
                     /locus_tag="U1404_000084"
     CDS             11587..12480
                     /locus_tag="U1404_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5347080.1"
                     /translation="MRFEFIADQHTKIKTFLKKHGVSKGLLAKIKYTGGNIWVNDIEQ
                     NATYLLDIGDRVTIDIPAEEDLTGSLKPIFFPLDIVYEDDHFLSINKPVGYASIPSAL
                     HSSTIANFVKGYLIEQNYENKQVHIVTRLDRDTSGVMLFAKHGYAHARLDKQLQAKLI
                     HKRYYALVKGNGQLEETGDIIAPIGRPEDSIITRCVTKNGKYAHTSYRVVQSWGDIHL
                     VDIQLHTGRTHQIRVHFSHIGFPLLGDDMYGGSLECGIERQALHCHNLAFDNPFSAER
                     IDLEAPLPEDFQAVINQLISK"
     gene            12498..13472
                     /gene="pta"
                     /locus_tag="U1404_000085"
     CDS             12498..13472
                     /gene="pta"
                     /locus_tag="U1404_000085"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM5347081.1"
                     /translation="MKIFEQLATKLEGKKVRIVLPEGEEPRILQATKRLVNESDVVPV
                     LLGNPDRIKIYLDIEGITEGFEIIDPAHYDRYDEMVAALVERRKGKVSEEQAHELLKD
                     VNYFGVMLVYMGVVEGMVSGAIHSTASTVRPALQIIKTEPGVSKTSGAFLMVKGEERY
                     IFGDCAINIDPDAQTLAEIAINSARTAKMFGIDPKVAMLSYSTKGSGAGPKVDKVVEA
                     TKIAQKLRPELDLDGELQFDAAFVPTTGKLKAPGSSVAGQATVFIFPGISAGNIGYKI
                     AERMGGFAAVGPVLQGLNQPVNDLSRGCNPDDVYNLTLITAVQALEHR"
     gene            13474..15210
                     /locus_tag="U1404_000086"
     CDS             13474..15210
                     /locus_tag="U1404_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347082.1"
                     /translation="MKFLSRYFKDYIKESILGPVFKLLEACFELLVPLIIAYIVDTII
                     PNGSQGNLVAMLFLLVGLACIGIIVSLIAQYYSAKAAVGVTKELTNDLYQKVLSLPKS
                     SRDILSSSSLLTRLTSDTLQIQTGINTFLRLFLRAPIVVFGSLIMAFYISPSLSAYFL
                     EMIILLIFIVTVISVMTSRIYQSMRKELDGLVGQVRETVTGWRVIRAFGQREREIKAF
                     QGINQIYKKQQLQAGFWSSLLSPLTFLVVNGTLLILIWQGNIAISHNLLEQGMLVALI
                     NYLLQILVELVKMIMVVSTLNQTYISAQRIQEVFDQTSEDVESSLPKVVSEDKEIIFS
                     VRHISFSYPKSAEESLSDIAFDLRKGQFMGIIGGTGSGKSTLVDLLQALYSVPTNQLS
                     LFIDGKSPKNLKEWRQQIAIVPQQAQLFAGTVRSNLSLGLESVLDSELWAALEIAQAK
                     SFIEDKGGLDSPVEAFGKNFSGGQRQRLTIARAILQKAPILVLDDATSALDYLTESRL
                     LAAIRRAFPAQTLIMVSQRTNSLRTADQILVFDQGRQVGLGRHEDLLRSSAIYQEIDQ
                     SQHREEDSHETI"
     gene            15197..16939
                     /locus_tag="U1404_000087"
     CDS             15197..16939
                     /locus_tag="U1404_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347083.1"
                     /translation="MKQSSFKELVRLVLGQPFQMYLMLVGTLVQVLLTVYLPILIGQA
                     VDAVLIADGQVLLGIIGKMVMVILLNTLVQWYLPLVTNRLVYGMVADLREQVYVKLHQ
                     MPLSYLDRHSVGDLVARFSSDSEQLTNGLLMVFNQFFIGILTIFLTIFTMARLDLTMM
                     LLVVALTPVSLLVARYIAKKSYGYYRKQTQARGKQSQLLEESISQLTLVQSFNAQEQF
                     TQGFQVVNDQYATYSQQAIFASSTVNPSTRFINAIIYALLAGLGALRIMAGQFTVGSL
                     TTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSIDDQAERKIDSEELKG
                     AISFDNVSFSYSPERSLIEHLDIDVEAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQ
                     IVLDGVPIRQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAAN
                     ADFFIRQLPQGYDTVLADGGEGLSQGQRQLLSIARVFVKIPKILILDEATSSIDTRTE
                     ILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAEQGVYYQ
                     MQTSQQTEEDESVR"
     gene            16923..17315
                     /locus_tag="U1404_000088"
     CDS             16923..17315
                     /locus_tag="U1404_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEM5347084.1"
                     /translation="MKVLDKLNLQPITVLDDYQATMLNEKEVLLTTKVTEKSLNPYGM
                     AHGGFLFTLADSVAGLTTVVGGSYSVTLQSNIHYMKAAKLGDTLSVTGSCTHDGSRTK
                     VVEVKIKNQDKQLLASASFTMFVTGKVE"
     gene            17550..18710
                     /gene="mutY"
                     /locus_tag="U1404_000089"
     CDS             17550..18710
                     /gene="mutY"
                     /locus_tag="U1404_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEM5347085.1"
                     /translation="MLDLKEYGIEMWPEEKIQAFRKALLDWYDANKRDLPWRRTKDPY
                     AIWVSEIMLQQTRVDTVIPYYERFLHYLPTISDLAQAPEEVILKLWEGLGYYSRVRNM
                     QKAAQQMVEDFDGQFPTTHAAISSLKGIGPYTAGAISSIAFNLPEPAVDGNVMRVLSR
                     LFEVDYDIGLPANRKIFQAMMELLIDPERPGDFHQALMDLGSDIESPVNPRPQDSPVK
                     AFSAAYLNGTMDKYPIKAPKKKPIPVAYQGFLIRNKDNQFLLEKNNEAGLLSGFWSFP
                     LLEKGAIVEKQVSLFEVAEEVVQPDIRQSFTELYGLTVDWQEQEFGIVQHIFSHRKWQ
                     IEMVEGVAETLNLPESKELKWVSVEDFPTYPFAKPQQKMWENFIKEKEKQKS"
     gene            complement(19373..20173)
                     /locus_tag="U1404_000090"
     CDS             complement(19373..20173)
                     /locus_tag="U1404_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5347086.1"
                     /translation="MILGDILKEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTK
                     KALLPTMDTLEKVAKGMAISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVQTLD
                     NELKGDFHAQWLTFGQEQLAAMQTTSITPSASILHLDDYRERIDLPVPGKVSAGTGYW
                     QDTDMNNLVSFYNDEIPDNQSYDTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGI
                     FSVNGENFVKKFKGDYLQSLNSDYDDIYFSPEDDIRPIGQVVDIYSPD"
     gene            20305..20775
                     /locus_tag="U1404_000091"
     CDS             20305..20775
                     /locus_tag="U1404_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347087.1"
                     /translation="MKRMTEISWNDIYKEWETYANHFGLTTPINTENLRDQKSKDFGK
                     GSLITLDLLADYDTDSEKTAAIWVASFCRDLIQDYAYLLNGRAYLTVNQIYFQALKQF
                     QSGAVIWSKPITRLQPKLFVSYRLLENLDLSHYSCVVELAMLQASMVRTQILEK"
     gene            20795..21337
                     /locus_tag="U1404_000092"
     CDS             20795..21337
                     /locus_tag="U1404_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347088.1"
                     /translation="MFNLLNKKAEVSKVAEYWNDTLIERGILSADELLEGKCWRCKSS
                     HGVAVCQIVSSKWSKDASLANQMVLCLSCQHEKPNVADTEIVWQWLEVENDERYWTLQ
                     GMAEYEKMYKKSVLQELWDMGIRDGEEVETLVNKVTSLSRKNDIVLNRATLAGLFRCE
                     IEQMRRKAFLNWTGIFKLVS"
     gene            complement(21563..22594)
                     /locus_tag="U1404_000093"
     CDS             complement(21563..22594)
                     /locus_tag="U1404_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004269878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM5347089.1"
                     /translation="MATITKRGNSYRATVSLYKKGEYKRETKTFSNRKDAELWTLEME
                     LEKGRGKNIAERSTLFPDFYRNWVHTVKKTDVREATFINYKRTLVIVDDLFDGIQLKH
                     LDDLVMQKKIDQYAETHSKKTVKELVLKIRGSLKYAYARGLISNDFGHLLKSKGQEQP
                     KSITEFKKLRQYCLSHTENEFNVLVALALETVARRGELLGIKKEDIFEYGIKILRSIS
                     PTNDDTRLKTKYSKRDISINEDVYQAVTKLAQTKEGYIFDWNGFKQASQLQKLLKQLG
                     LTKTTFHGLRDTHASFLFSKDISLDYISRHLGHNSILTTQQYYLELMPEKKHQQDADA
                     LSLLNDLSL"
     gene            complement(22963..23718)
                     /locus_tag="U1404_000094"
     CDS             complement(22963..23718)
                     /locus_tag="U1404_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347090.1"
                     /translation="MALGNVEKDTEGWIELINQYLQYCIEIGLSPYTQATYKVALTKV
                     LGVSSTNFIATQPRTRANRMNNRVLHKDYRLSNKNNDYWHKVVTSTGLRKSELIHVTG
                     DALQRGRDGRWYLNLAGHKHHTKGRRDRWSPIMATSQEEEEWLVAIFQRAGEKKVFHV
                     PKDLILDDFDGKKVPTALKSHKYPTEYAERVYRSVAREISKIRNRKEVIHLRKELVGI
                     SLNRKACKIVIKTLGHNRPEEFPRSYAYILLKR"
     gene            23997..24764
                     /locus_tag="U1404_000095"
     CDS             23997..24764
                     /locus_tag="U1404_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5347091.1"
                     /translation="MNKRERLEEITRLVNKKGTVRISEIVELLNVTDMTVRRDFIELE
                     EQGVLTKIHGGARSNKAFQYREYSHSEKHIQNKEAKQEIAERAAQLIEDGDTVFLGPG
                     TTVAFLAEAIKNSRLTVITNCMPVFTILSQKKTEEFQVFLLGGEYRQVTESFVGEITN
                     TSLEKMRFSKIFFSGNGLKGTDVMTSTLAEAYTQNIAIKHSLEKYLLLDASKIGKDDF
                     TSFCDLHDVTALVTDMNAKDENYQLLSKHIEIITTKL"
     gene            24970..25392
                     /gene="lacA"
                     /locus_tag="U1404_000096"
     CDS             24970..25392
                     /gene="lacA"
                     /locus_tag="U1404_000096"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HEM5347092.1"
                     /translation="MTIIIGADPAGSKLKDVIKDYLLEKSYDFKDVSDGSDFVDTTLA
                     VVAEVNQQEGNLGIVIDAYGVGPFMTATKVKGMIAAEVSDERSAYMTRGHNNSRIITI
                     GSEIVGEGIAKNIVKGFVEGEYDGGRHQIRVDMLNKMC"
     gene            25419..25934
                     /gene="lacB"
                     /locus_tag="U1404_000097"
     CDS             25419..25934
                     /gene="lacB"
                     /locus_tag="U1404_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HEM5347093.1"
                     /translation="MKIAIGCDHIVTYEKIAVVDYLKNQGYEVLDFGTYDNVRTHYPI
                     FGKKVGEAVASGQADLGICICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNAN
                     VIGFGGKITGELLMCDIIEAFIKAEYKPTEANKRLIEKIAAVETLNQEQANPEFFTEF
                     LEKWDRGEYQD"
     gene            25944..26876
                     /locus_tag="U1404_000098"
     CDS             25944..26876
                     /locus_tag="U1404_000098"
                     /EC_number="2.7.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016250260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HEM5347094.1"
                     /translation="MILTITLNPSVDIAYQLDTFHLDTVNRVEKVQKTAGGKGLNVTR
                     VLKQIGEDVVATGFIGGEIGSYVKKQLTRNDIKNSFVEIGNETRNCIAVLHDGQQTEI
                     LEQGPTIQEHEALNFIEHLEIILNNVDVVVISGSLPKGLASNYYVQLVELCKKFGIAV
                     VLDCSGEALKNVLESQQKPTVIKPNTEELSQLIGKEVTDDIQELKSVLSGQLFQGIDW
                     IVVSLGAQGAFAKHNDKFYRVRIPKIKVVNPVGSGDSTVAGIAAGLVHALPDAELLKN
                     ANVLGMLNAQEEQTGYVNLENAESLYSQIEVEEV"
     gene            26878..27855
                     /gene="lacD"
                     /locus_tag="U1404_000099"
     CDS             26878..27855
                     /gene="lacD"
                     /locus_tag="U1404_000099"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5347095.1"
                     /translation="MVVTADKRKYMEKVSNEAGIISALAFDQRGALKKMMAKHQAEEP
                     TVEQMEELKTLVSEELTQFSSSILLDPEFGLPASRARDEQCGLLLAYEKTGYDTSSTS
                     RLPDCLVEWSVKRLKEEGADAIKFLLYYDVDGDSYVNLQKQAYIERLGSECQAEGLPF
                     FLEILSYDETIEDNASVEFAKVKPRKVNEAMRVFSDERFGVDVLKVEVPVNMNFVEGF
                     GTGEVVYTKEEAAEYFRQQEASTHLPYIYLSAGVSAKLFQDTLVFAHEAGAKFNGVLC
                     GRATWAGVVPVYIEQGEEAAREWLRSVGRENIEGLDAVLSQTATSWLEK"
     gene            28043..28876
                     /locus_tag="U1404_000100"
     CDS             28043..28876
                     /locus_tag="U1404_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5347096.1"
                     /translation="MFRIIQSLNNNAALVKNEHGEQAVVMGLGITFQKKKGDLIVKDK
                     IENIFSLKNDEAKENFLTLLKDIPLDFISATYTVINHLIETYHYPVQEYLYVTLTDHI
                     YCAYQAVLKNTYQESRLPNISAEYPLEYKMAREALAMFREKLLNDFPNDEIGRIALHL
                     INAKGETIHPTSEEHDISKKIIAEVEQILIENGIKRSKENSNFYDRFMIHLSYFLNYL
                     DRSHQSNESIASLEQYIKLQNPRAHQVGSQIFEMITSLVDEPVNDSERFYIVLHIQRL
                     L"
     gene            28908..29225
                     /locus_tag="U1404_000101"
     CDS             28908..29225
                     /locus_tag="U1404_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5347097.1"
                     /translation="MNREEITLLGFEIVAFAGDARSRLMEALAAAQKGDYAKAEELVE
                     AANACIVEAHHAQTSLLQKEAAGEDLAFSVTLMHGQDHLMTTLLLKDMMGHMIELYKR
                     GDK"
     gene            29225..30903
                     /locus_tag="U1404_000102"
                     /pseudo
     CDS             29225..30903
                     /locus_tag="U1404_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003048452.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIBC"
     gene            31138..32544
                     /gene="lacG"
                     /locus_tag="U1404_000103"
     CDS             31138..32544
                     /gene="lacG"
                     /locus_tag="U1404_000103"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HEM5347098.1"
                     /translation="MVKTLPKDFIFGGATAAYQAEGATQTDGKGRVAWDKYLEDNYWY
                     TAEPASDFYNRYPVDLELSEQFGVNGIRISIAWSRIFPTGFGAVNPKGVEYYHKLFAE
                     CHKRHVEPFVTLHHFDTPETLHSNGDFLNRENIEHFVNYAAFCFKEFPEVNYWTTFNE
                     IGPIGDGQYLVGKFPPGIQYDLAKVFQSHHNMMVSHAKAVKLYKDAGYSGEIGVVHAL
                     PTKYPYDPSNPDDVRAAELEDIIHNKFILDATYLGYYSEKTLEGVRHILKVNGGELDL
                     RDEDFAALDAAKDLNDFLGINYYMSDWMRAHDGETEIIHNGKGEKGSSKYQIKGVGRR
                     ESPVDIPKTDWDWIIYPQGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDGTVYDD
                     GRIDYVKKHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERY
                     PKKSAYWYKKVAETQVIE"
     gene            32611..33504
                     /locus_tag="U1404_000104"
     CDS             32611..33504
                     /locus_tag="U1404_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM5347099.1"
                     /translation="MLELKNENLTVQFSEFGGQIISIKDKDGIEYLWQGDPTYWSGQA
                     PVLFPICGSLRNDWAIYEPAERPTFTGTIPRHGLVRKMLFKNVSSTENSLEFSISSNE
                     ETVKNYPFEFELSINYSLLGNTIRTEYQVKNLEGHRKLPYFIGGHPGFNCPLLDGESY
                     EDYYLEFEKVESCTVPRSFPETGLLDLRDRQPFLENQKTLDLSYQLFEHDAITLDQLA
                     SRKVTLKSKNHQKKLSIAFDDFPYLVIWSTTNQSPFIALEPWIGLSTSLEESDIFNAK
                     RSISYVAPKEVDKKHFDIIIE"
BASE COUNT        10180 a         5872 c         7282 g        10284 t
ORIGIN      
        1 ttgctcacct tttttactat tttatataat tagtttttaa caccagctgc aatttctggg
       61 tttgcgaaag catcatcgat gatgtctttt aattgtttag cagatgcttg cattttttgc
      121 aattcagcgt cgctcaatgg gatattgact ggacgaacga taccgtgggc accgatgata
      181 gcaggttgac cgatgaagac atcttcaaca ccttcgtatt ggccagcttg gtaaactgac
      241 aatggaagta ctgcattttc atcatcaaag attgctttag tgatacgtgc aagtgcaaca
      301 ccgataccgt agtaagttgc gcctttttta ttgatgattg agtaggctgc atcacgaaca
      361 gatacaaaca agtcaacaag accttgctca tcaatatcgc ggttatcttg caaccagtcg
      421 tacaatttca caccggcaac gttggcatgt gaccaaactg caaattctga gtcaccgtgc
      481 tcacccatga tgtaagcgtg aactgaacgt gcgtcgatac cgattttctc agccaatgct
      541 tgacggaaac gagctgagtc aagagaagta ccagaaccga taacacgctc tttagggaaa
      601 ccagagaatt tccaagttga gtaagtcaat acgtcaacag ggttagcagc aacaaggaag
      661 ataccgttga aaccagagtt aacgatttct gtaacgattt gttggttgat acgaaggttt
      721 ttctctacca attcaaggcg agtttcacct ggtttttgtg gcaaaccagc tgtcaataca
      781 accaagtctg cgtcatgagc atctgaatac tcagcagagt agattttttt agggaatgtg
      841 aaggccaatg cgtggctcaa gtcttctgca tcaccttgag tacggtcttt gttgatatcg
      901 atgataccca attcttgacc aatcccttgg ttaacaagag cataagcata agcagaacct
      961 acggcaccgt caccgacaag gattactttt ttgtgttgtt tagttgcagt cattgctaaa
     1021 catctcctta gttttatttg gggatgactt catcccgacc ataatacatt ctagcatgtt
     1081 ttaagctttt tgtcacttgt gaaagcgcct ttgaaaatgt ttacatgcta gtttccaaca
     1141 aagaaattta ttcgccaata tggtataata gaagcacaat gactgttgaa agaggcatat
     1201 aatgcaagat aaaaatttag taacggttaa tctgaccaat gagatgaaat catccttcat
     1261 cgactatgcg atgagtgtta tcgtttcacg tgctctgcct gatgtacgtg atggtctgaa
     1321 gccggttcat cgccgtattt tgtatgggat gaatgaatta ggaattacac cggataaacc
     1381 acataaaaaa tcagcccgta tcacagggga tgttatgggt aaatatcacc cgcatggaga
     1441 tagtgcgatt tacgaagcaa tggttcgtat ggcacaatgg tggagctacc gtcacatgtt
     1501 agttgatggt cacggaaact ttggttccat ggatggcgac ggagcagccg ctcagcgtta
     1561 tacagaagca cgcatgagca agattgcgct tgaaatgctt cgtgatatta acaagaacac
     1621 ggtaaatttt gcagataact atgatgcgag tgaacgtgag cctgaggttt tacctgctcg
     1681 tttccctaac cttctggtta acggaacgac tggtatcgcc gttggtatgg ctaccaacat
     1741 tcctccacac aacttgggtg agactatcga ggcagttaag ctggttatgg acaatcccga
     1801 ggtaacaaca cgtgagatta tggaagtctt gcctggacca gattttccga caggtgcctt
     1861 ggttatgggg aaatctggaa ttcaccgtgc ttatgaaact ggtaaaggtt caatagttct
     1921 tcgttcccgc acagaaattg aagaatatgg aaatggtcgt gaacgcattg ttgttacaga
     1981 gtttccatac atggtcaata agtccaaggt tcaagaacat attgttaaat tagtccaaga
     2041 aaaacgtatt gaaggaatca ctgctgttcg agacgaatcc aaccgtgagg gtgtacgatt
     2101 tgttatcgaa gttcgtcgtg atgcttctgc taacgttatt ttgaataacc tattcaagca
     2161 aacacagctt caaaccaact ttagtttcaa catgttggcc atccaaaatg gtgtaccgaa
     2221 aatcctttct gtacgtcaga ttctagagtc ttatattgaa caccaaaaag aagtagtcac
     2281 tcgtcgtaca cgatttgata aagaaaaggc tgaggcgcgt gctcatatct tagaaggctt
     2341 gctgattgct cttgaccata ttgatgaagt cattcgtatt atccgtaatt cagaaactga
     2401 tgctattgct caagctgaat tgatggagaa atttgacctt tctgtacgtc agagtcaggc
     2461 tattcttgat atgcgtcttc gtcgtttgac aggtttggaa cgggacaaga ttcaatcaga
     2521 atatgatgag ttagtggcgt tgattgcaga tttggctgac attctagcta agcctgagcg
     2581 tgttgttcag attattaaag acgaattaga agaagtcaaa cgtaaatatg ctgacccacg
     2641 ccgtacagaa ttgatggttg gtgaagttct atcccttgaa gatgaggact tgattgaaga
     2701 aacggatgtt ttaatcacct tgtcaaacca aggctacatc aagcgtttgg cacaggatga
     2761 gtttcaagct cagaagcgtg gaggacgtgg ggttcaagga actggcgtca aggatgatga
     2821 ttttgtacga gaattagtct ctacaagcac tcatgatcgc ttgctcttct tcactaataa
     2881 gggacgtgtt taccgtctca aaggctatga aatcccagaa tatggtcgta ctgcaaaggg
     2941 acttccagtg gtcaatttgc ttaaattgga agaaaacgag gcaattcaaa ccattatcaa
     3001 tgtaactaag gaccaggagg cagatagcta tctcttcttt gcaacccgcc aaggtgttgt
     3061 aaaacggact agtgtgtcag aatttgccaa tattcgtcag agtggtctga aagctttgaa
     3121 tttgaaagaa gacgatgaac tcatcaatgt tttcttaaca aatggtcaag cagacattat
     3181 tatggggact aagttcggtt attctgtacg tttcactgaa acagatgttc gtaatatggg
     3241 ccgtactgca acaggtgttc gtggtatcaa tttacgcgag ggagaccagt tagttggcgc
     3301 tactatgatt tctgatgacc aagaagtact cgtattgacg gaaaaaggtt ttggtaaacg
     3361 tacaccagcc agtgagtatc caaccaaagg tcgtggtggt aagggtatca agactcttaa
     3421 agttgctgat aagaatggtt ctctggcagg tttgacaacg gtatctggtg atgaagatat
     3481 tatggttatt accgatactg gtgtgattat tcgtacaagt gttgccaata tctctcaaac
     3541 tggtcgttca accatgggtg taaaagtgat gcgcttgaat gatgaagcga aaatcatgac
     3601 ctttgccttg gtagatgctg ccgaaattaa agaagaaaag gaataaataa tcatgtcaaa
     3661 acgtgaaaaa aagaagaagc gtaaaggttc tttttggcgc aattttttaa cagttgtatt
     3721 gatactgatt tccttggcat tgatatttaa tacctctatc cgtaatttta ttatcggctg
     3781 gaatacgaat aaataccaga ttagcaatgt tacgacagag gatatcgaaa agaataaaca
     3841 ggctgagaca acatttgatt tcgaacaggt tcagtctatt tctacagaag ctattttagc
     3901 agctcagtgg gatgcacaac gcttacctgt aattggtggg attgcggttc ccgagcttgg
     3961 tatcaacctt cctattttta aaggggtctt caatacttcg ctcatgtatg gagctggtac
     4021 catgaaggaa aaccaagaga tggggaaagg aaattatgcg ttggccagcc accatatttt
     4081 tggtgtaact ggtgcggcag atgttctctt ttcaccgctt gatcgtgcta aaaacggcat
     4141 gaaaatctat attactgaca agaccaatgt ttacacctac gttattgata gtgtggaaat
     4201 tgtttcgcct gaaagtgtct atgtcattga tgatgtagaa ggacgtacag aagttacgtt
     4261 agtgacatgt acggactatt atgctacgca acgtattgtt gtaaaaggag ttcttgaatc
     4321 aaccactcca tataatgaaa cggcaaaaga catcttagat tccttcaata agagttataa
     4381 tcagtatgat tatggacaat aaaacatcta tatattaagg ataaagaagt ggtataggac
     4441 tgaggagata atctttggtt ttatatggct tctttttttg caagatttta cgaatagata
     4501 ggtgaggagg aaatgatgta tcaaattgaa ttcaaagaag aggccattct acctagagaa
     4561 cgtttggtag aagttggagc tgagcgtctc agtaatcagg aactactagc aatttttatt
     4621 agaactggga caaaaaaaga acctgtttct attctctcca ataaattatt gaatcgtttg
     4681 gagagtttag cggctctaag agaactatca attgaagaat tgcaaagttt gactggaatt
     4741 gggcgcgtca aggcgattga aattaaggct atgattgaac ttggaaaacg tatcaatcaa
     4801 tcagagctgc tcttaaatga gagaattttg ggaagtgaga agttgggacg taagatgatt
     4861 catgaaatcg ggcataagaa gcaggagcac ctagttgcac tttatctcaa tacacagaac
     4921 cagattatca gtcaaaaaac gatttttatt gggagtgtta atcgtagcat tgcagaacca
     4981 cgtgaaattt tgcattacgc agtaaaatgt atggcaacat cgattatcat cgttcacaac
     5041 cacccgtcgg gttcagtaca acctagtagg aatgatttgc tatttacgga gaatttaaaa
     5101 gagtcctgcg aaaagctagg actggtatta ttagatcatt taattgttgg aaataaggat
     5161 tactattctt ttagagaaga aagtgagtta ttttaaagtt tattgacaat atagtggaag
     5221 agttcttttt caatctcacg tttaccgtag agtagttcag gatgccattg aacccctaaa
     5281 aatttagttg ggtaggctga atgaactgct tcaataatct gttgattatc tgatagtgca
     5341 atgatttcta agtcaggggc taagtctttg atagcctgac ggtgaaatga gttcacactc
     5401 ggatcggact catatatgtc gtaaagtgga ctattttgag tcagttgaat cgtttgacta
     5461 acttcttgtc catctatgtc ttgccaatgt tcagaaattg attgatgaag gctaccacct
     5521 tgagctacat tgtagagctg tagacctcgg cagataccga agataggttt ttgattttct
     5581 tgggcagccc ttatgatggc caattcaaac tcgtcacgct ttggtagata attatcgctg
     5641 tcaatagttc tttcttcgcg atagtaactt ggctggacat tttgtcctcc tgttaggatg
     5701 agtttgtcaa taagatggat ataatatttt gccaaatctg gctctgtaac aggaaggatg
     5761 agtgggagcc cgccagcatc ttcaatagct tgtacgaggc aagtttgggt ataagaaagc
     5821 aggggttctg tatgatcccc tgttttatat tcatttccag aaataccaat aactggtttt
     5881 ttcattgctt atccttttcg cataaagtag agtagtgtct gtaattcact agtcaaatca
     5941 acatactgga caacgacatc ttttgggaca gacaagttaa ctggtgaaaa gctcagaatt
     6001 cccttgacac cagcttcaac aagaatatcg gtcacttctt gtgccttgac gctgggtacc
     6061 gttagaatgg ctgtctgaga gtttgcttcg ctgatacgtt ccttgatctc tgagattgca
     6121 tggattggga tattttcatc tgtcgttcca acagctggat tatcatctgc ttcaaaagcc
     6181 atgactattt tcattttatt tcgttcgtgg aagcgatagt gtagcaaggc ccgccccata
     6241 ttcccaacac caacaagcat aacattggtg atggaggtat catttagaat atctgcaaag
     6301 aaatccatca actctttgac attgtagcca aagccacgac gcccaagctc tccaaaatag
     6361 gaaaaatctc ggcggacggt agccgaatcg attccgatag cttcagcaat ttcttttgaa
     6421 ctagcttttt caatatttcc agcatagaaa cgtttaaaaa tgcgatagta gagggataga
     6481 cgtttggcag tagcgcgtgg aatatcagat tttttatcgt ttttcacttt agactccttt
     6541 atttcgatag aatacgcttt atcgattatt tatatattaa acagttcttt attctattct
     6601 agtccaagtt tgtgaaaaaa tcaacagatt gattttaaaa aaagattaaa caggaaactg
     6661 tctaatctag tgtttgtaaa tagcgataga gatctccgat tgtccctttg taatccagag
     6721 cttgtccgtc ttgtgtaatg ctggtaactg gataatagtc tgggagggtt aggcaaccgg
     6781 aaaaagccag aatggttgca tccttattct caaatgtttg gatacgttct tgcttgtaag
     6841 cgtcaagata gtgaatttca atcatactaa ctctcttttg taaagatgtc acggtcaatc
     6901 aagctatcca tgaggaaata gaatttttct tgaataacct tgttactttc tggcttaaaa
     6961 atgtttacca gatgaagacc agacttgtcg gtaatgttaa ttttaaaacc agttaggtct
     7021 tgattgataa taattttcaa gaggaatcct tggtttgaat ttggaatctc ttccagaaga
     7081 cgtgtaagct gatagtgacc tgctttggtt tgttcaaagg tgttatcacg gagtgtatat
     7141 tttttgatag cagggctaat gtgataagta aaattacaat cttttaaggt aactgattgt
     7201 tggaatgcca ttttaacctc caagtatttt ctttagttcg atgataagag tatctatctc
     7261 ttcttttgta ttgatttcag ataggctgat acgaatggat tctttcagac gatgggagtc
     7321 ttttccatac atagcttcta aaacatggct attttggaca acacctgccg tacatgcaga
     7381 accactagaa acagcgatac ctgctaaatc tagttgcata aggagttgtt cattaagttt
     7441 accaggaaaa ccgatattaa ggacatgagg gagatgaggt ccagcctgat tgagataata
     7501 gtctaagcca gacaatccct cgataatatg ttgtcgcagt tcactgacat gttgatgatg
     7561 cgtatctaag gactcatatt gttctgttag ggcagtcgcc atagcagcaa tagcagggag
     7621 attctcagta cctgctcgat gttgctgttc ctgctttccg ccgtggatca aggaatcaaa
     7681 tttatgaact ttactataca ggaatcccgt tccctttgga ccatggaatt tatgggcaga
     7741 ggccgcgagc aagtcaattc cgtagttaga tggagatatt gcgatttttc caattgcttg
     7801 gacagcatct acatgaaaga cggcctgatg atcggctagg agttctccaa tttccttgat
     7861 gggaagtagc tgaccggtct cattgttagc aaacatgacg ctgactaaaa tagtatctgg
     7921 ccgaagggca tcctgaattt gttgagcggt gattacttgg tcgactggtt ggatataggt
     7981 tacctcgaac ccaaaccgtt cctctagata ctgcatggta tggaggacag catggtgttc
     8041 gatagccgta gtaatcaggt gttttccttt ggattgatgc gcaagtgcat agccttgaat
     8101 agctaaagta tcagcttcgg agcctccaga tgtgaaaata atttgttcgg gagaggcgga
     8161 gagaatctga gcaatctctt gacgactttg tctaagacgt tgattggctt tccgaccgct
     8221 ttgatgaata ctggaggggt ttccataatt ttcttgagcc acttccatca tccgttggag
     8281 tgcagtagga gatagagcag tggttgctgc attatctaaa taaatcaaag agttactcct
     8341 agttttcttt ttcaggacta gtaaatttga aaagtgggct gagtggctga tgttcttgga
     8401 tgcggtggat ggcatctgca atcaagtcac tagctgttag gaaggcgata tttttaggat
     8461 gctgttcttt gcttgcaaca gaatcggtaa ctaatatttc tttgattggt gcttcatcta
     8521 agagttgggt tgcagttcca gtaaagagac cgtggctggc aactgcataa atttcagtag
     8581 caccaccttc ttggacaatt tttgaagctt gtgagaaagt gcgaccagta ttgagaatat
     8641 cgtccaccaa aatagctttt ttaccagcaa catcacctat aatatagcct tcagaacgct
     8701 cagaatcatc ttgagcgtag tcgataattg caatcggtgc atttagaaat tcagcgatat
     8761 tacgcgcgcg tttgatacca gaatttttag gactcacaat gacgacatct tcaccgcaga
     8821 gtcctttttc catgtagtag gctgcaaaaa gtggttctgt aaggagattg tctactggaa
     8881 tatcaaagaa accttgaatt tgtgaagcgt gcaagtcaag agtcaataca cggtcgacac
     8941 cagctttaac cagcatattt gcaactaatt tagctgtaat tggttcgcgt ggagaagcgg
     9001 tacggtcttg acgagcacag ccgaaataag ggatgacagc tgtaatggtg ttggcactag
     9061 cacgtttaca agcatcgatc ataatcaata attcccacaa gtgattattg accggatagc
     9121 ttgttgattg gataatgtag acgtctacgc cacgtacaga ttcttcaatg ttaatttgaa
     9181 tctcaccatc agaaaactga cgagaagaca gctttccaag agggattcca gcagaatcag
     9241 caattttttc agcaatatca cggttgctat tgagtgagaa taatttaatg ttatgttcac
     9301 cgagtggttg taccatttta aagtaactcc ttttacacac tgagctttta tgatgacata
     9361 aaagtatttt ttacgataga tagttctatt ctatcaaaaa aatgaaaaat tttcagtagt
     9421 gaaactaaaa aatcaacctt agttggctga ttttttatag ttatttcatg tgggcagcag
     9481 ttcgtgcgac cttactacta gcatatttga attgaattga tttcttctta aggaattcat
     9541 caaaaagaat tttccctgca tctgcatcgg tcacttcgac ttctaattcg taatcttttt
     9601 gtcccacata atcattttca tcgagggcca taaggcctat agatgtctgt ttctcatagc
     9661 gttttgtcgt gaggattccc cagacagcaa gtttatcaag tggaatttcg gttgcagaaa
     9721 taatatcaga aatttgtcct gctggtagtt gaaaattttc cagtaaatca tgagcagttt
     9781 ggatgtctag aacttggtta tattcttgat tgccgacttc ttgtggaatt tttaaggtta
     9841 gttctgctga gtcctcaaat gtacgaatac ggagtgaaaa gcggtgattc ttcatatcta
     9901 ggtctggggt atcaatgtag tggtttgttt gaagaattgg gctcacatct gaaaagtcag
     9961 taagcaggcg tttgtattcg gatttggtca gtaaggtttt atactcaatt tcaaggtggt
    10021 ttttcatgca gtaaaccctt tcaatgtgtt ataatagatt agtctttgtg ttattctaat
    10081 acaatttaaa agttttgaca agaaaggggc cgtatggact ttaactggga agaattttta
    10141 gacccctata ttcagacagt tggtgaattg aaaatcaaac tgcgggggat tcgcaagcag
    10201 tatcgcaagg ctaatcggca ttctccaatt gagtttgtca caggacgggt aaaaccgatt
    10261 gaatccatta aagaaaaaat ggctctgcga catattaaat tggaaaatct tgctcaagat
    10321 atgcaagata ttgccggtct tcggattatg gttcaatttg tggacgacat tgaagaagta
    10381 ttagctattt tgcggaaacg caaggatatg caaattgtgc atgaacggga ttatatcaat
    10441 aatatgaaag cctctggcta ccgttcatat catgtggtga ttgagtatcc tgtggatact
    10501 ataaatggca acgagacggt tctggcagaa atccagattc gaaccctttc catgaatttc
    10561 tgggctacaa ttgaacattc tctgaattat aaatataagg gaaattttcc agaagaaatc
    10621 aagaaacgct tggaagttac agcaaaaatt gcctatgaat tagatgagga gatgcgaaaa
    10681 atccgcaacg acattcaaga agcgcaggcc ttatttgatc ctgcctatcg caaactgaat
    10741 gacggtgtgg gcaacagtga tgatacagat gaagaataca ggtagaaaaa aaatcgctct
    10801 gctcgctagt cgaaatccta agagtgaagc ggtgtccaaa gaattatgga caaagttaaa
    10861 agaagcaaat tttattttga ctcctaaaaa tccagatatt gtcatttcta tcggtggaga
    10921 tgggatgctt ttatctgctt ttcacaaata tgaaaagttg attgatcgtg tacgttttgt
    10981 aggaattcac acgggtcatt tggggtttta tacagattat cgcgattttg aagtggacaa
    11041 gctgattgaa aatcttaagc ttgatacagg tgctagagta tcgtatccga ttttaaatgt
    11101 taaggtcaag atgacagatg gtcgcattgt cgaggcgcgt gccttaaatg aggcgacagt
    11161 aaaacgtctt tctaagacca tggtcgcaga tattattatt aacaatgtgc ccttcgaacg
    11221 cttcagaggg gatggaattt cggtttcaac gccgacaggc tcaacagcct ataacaagtc
    11281 attaggtggt gctgttttac atccaacaat cgaggcattg cagattgcag aagtggcaag
    11341 tttgaacaat cgtgtttacc gcaccttggg ttcatccgtt gttgtcccta aaaaagacaa
    11401 gattgtgatt gaaccaaagc atagtgaccg ttactcgatt gcggtagaca ataagacttt
    11461 tgtctatgat agtattgaaa gtatagagta tcagatagac aatagtaaga ttcattttgt
    11521 tgcaacaccg agtcatacta gtttttggaa tcgggttaag gacgccttta ttggagaggt
    11581 ggagtaatgc ggtttgaatt cattgctgac cagcatacga aaataaagac tttccttaaa
    11641 aaacatggtg tctctaaagg actattagcg aagattaagt ataccggtgg caatatctgg
    11701 gtcaacgata ttgagcaaaa tgcaacttac ttgcttgata ttggagatag ggttacaatt
    11761 gacatacctg ctgaagagga tttgactggt agtttgaagc cgattttctt tccgttggat
    11821 attgtctatg aagatgatca ttttctgtcg ataaataagc cggttggcta cgcctccatt
    11881 ccttctgcct tgcattcatc cacaatcgca aattttgtaa aaggttatct tattgagcag
    11941 aattatgaga ataagcaggt tcatattgtg actcgtctgg atagggatac atcaggcgtc
    12001 atgctgtttg ccaagcacgg ctatgcccat gcacgactcg ataagcagtt acaggccaag
    12061 cttattcata aacgttatta tgctttggtg aaggggaatg ggcagctaga agagacaggg
    12121 gatattattg cccctatcgg tcgtccagaa gatagcatca ttacccgttg tgtgacaaag
    12181 aatggaaaat atgcccatac ttcctatcgt gttgtgcaat cgtggggaga tattcattta
    12241 gtagatattc aactacatac tgggcggact catcagattc gtgttcattt ttctcacatt
    12301 ggatttccgt tgttaggaga tgatatgtat ggtggaagtt tggaatgtgg gatagaacgt
    12361 caagccttac attgtcataa tttggccttc gacaatcctt tttcagccga aaggattgat
    12421 ttggaagcac cgcttcctga ggattttcag gctgttatca atcagttaat aagtaaataa
    12481 atttaaggag tttgttcatg aaaatttttg agcaattagc tacaaagcta gagggtaaaa
    12541 aagtacgtat cgtattgcca gaaggtgaag aaccacgtat cttgcaggcg acaaaacgtt
    12601 tggtaaatga gtcggatgta gtacccgtct tgcttggaaa cccagatcgt attaagattt
    12661 accttgacat tgaagggatt acagaaggtt ttgaaattat tgacccagct cattatgata
    12721 gatatgatga gatggtagct gctttggtag agcgccgtaa aggtaaggta tcagaagagc
    12781 aggcacatga gttgttgaaa gatgttaact actttggtgt tatgttggta tatatgggcg
    12841 tagtagaagg tatggtatct ggtgcgattc attcaaccgc ttcaacagtt cgtccagctc
    12901 ttcaaatcat taaaacagag ccaggtgtat cgaaaacatc aggtgccttc ttgatggtaa
    12961 aaggtgaaga gcgttatatt tttggtgact gtgctatcaa cattgatcca gatgctcaaa
    13021 ccttggcaga aatcgctatc aactcagcac gtactgctaa aatgtttggt attgatccca
    13081 aagtagcgat gctcagctat tctacaaaag gctctggtgc tggtcctaaa gtagataagg
    13141 ttgttgaagc tacaaaaatt gctcaaaaat tgcgtcctga gttggatttg gacggtgaat
    13201 tgcaatttga tgctgccttt gttcctacca caggtaaatt aaaagcccca ggttcgagtg
    13261 ttgctggtca agcgactgta tttatcttcc caggtatctc agctggtaat attggttata
    13321 aaattgccga acgtatgggt ggatttgcag cggtaggtcc tgttttacaa ggtttgaatc
    13381 agcctgtaaa cgacttgtct cgtggttgta accctgatga tgtttacaac ttgaccttga
    13441 ttactgcggt tcaggctttg gagcaccgtt aatatgaaat ttttatcacg atattttaag
    13501 gactatatta aggaatccat attaggtcca gtttttaaac tattggaagc ttgttttgag
    13561 cttttggtac cattaattat cgcctatatc gttgatacaa ttattccaaa tggcagccag
    13621 ggaaacctgg ttgctatgct ttttttactg gttggtctag catgtattgg aattattgtt
    13681 tcactaatag cgcaatatta ttcagctaaa gcagcggttg gagtgactaa agagctgaca
    13741 aatgacttgt atcagaaggt tctttccctt cccaagtcta gccgagatat tctttcctca
    13801 tccagcttgc tgacacgatt gaccagcgac actttacaaa ttcaaacagg tattaatact
    13861 tttcttcgtt tgtttttacg tgctccaatt gtcgtatttg gttcgctcat catggcattc
    13921 tatattagcc caagtctatc tgcctatttt ctagaaatga ttatcctatt gatttttata
    13981 gtgacagtca tttctgttat gaccagccgt atttatcaat cgatgcgaaa agaattagat
    14041 ggtttggtgg ggcaggtacg tgagacagtg actggttggc gagtgattcg tgcatttgga
    14101 caaagagagc gggaaattaa ggcttttcaa ggcataaatc agatttataa gaagcaacag
    14161 ttgcaggctg gtttttggtc tagtctttta tcgccattga catttttagt ggtcaacggc
    14221 accttgctca ttctcatctg gcagggaaat atagccattt cacacaattt gttggaacaa
    14281 gggatgttgg tcgctctcat caactacctt ttacaaattt tagtagaatt agtcaagatg
    14341 attatggtcg tgtctactct caaccagacc tatatttcag cgcaacgtat tcaagaggtt
    14401 tttgaccaaa catctgagga tgtagagtct agtttgccaa aagtggttag tgaggataag
    14461 gaaatcatct tttctgtgcg tcatatttcc ttttcttatc caaaatctgc tgaggagtcc
    14521 ctgtctgaca ttgcttttga cttgcgtaag ggacagttta tgggaattat cgggggaact
    14581 gggtcaggta agtccaccct agtagattta ttgcaggcac tctattcagt gccaacaaat
    14641 cagctctctc tcttcattga tggaaaaagt cctaagaatt taaaagaatg gcggcagcaa
    14701 attgccattg ttccgcaaca ggctcagctt tttgctggga ctgtgcgttc taacctgtca
    14761 ttaggcttag aaagtgtatt ggacagtgag ttatgggcag cgctagaaat cgcacaggct
    14821 aagtccttca ttgaggacaa aggaggcttg gatagtcctg tcgaagcctt tgggaagaac
    14881 ttttctggtg gacagcgtca acgtttgacc attgcacgcg ctattttaca gaaagcaccg
    14941 atattggttt tagatgacgc gacctctgct ttggattatc tgacagagag tcggttattg
    15001 gccgcgattc gtcgtgcatt tcctgctcaa accttaataa tggtatctca gagaaccaat
    15061 agtttacgaa cagctgatca gattttggtc tttgatcaag gccgtcaagt gggacttggc
    15121 cgtcatgaag acttgctgag aagctctgcc atttaccaag aaatcgatca atcacaacat
    15181 agggaggagg acagccatga aacaatctag ttttaaggaa ctggtcagat tggttttagg
    15241 ccaacccttt caaatgtact tgatgttggt gggaacttta gtgcaggtgc ttctgacagt
    15301 ttatctgcct atcttgattg gtcaggcagt tgatgcagta ttgatagcgg atggtcaggt
    15361 cttgctaggg ataattggca aaatggtgat ggttatcctg cttaatacgc tggtgcaatg
    15421 gtatctcccg ctagtaacca atcgcttggt ttatggaatg gtggctgact tgcgtgaaca
    15481 ggtttatgtt aagctgcacc agatgcccct atcttatctt gatcgtcatt cagttggtga
    15541 tttagtagct cgtttttcaa gtgatagtga gcaattaacc aacggactct taatggtttt
    15601 caatcaattt ttcataggta tcttgaccat tttcctaacc attttcacta tggctaggct
    15661 tgacttgacg atgatgttgc tggttgtggc attgactcca gtttctctgc ttgttgcacg
    15721 ctatatcgct aagaaatcct atggttatta tagaaaacaa acacaggcac gtgggaagca
    15781 atctcagcta cttgaggaat cgatcagtca attgaccttg gttcaatctt tcaatgccca
    15841 agagcaattt acgcaaggtt ttcaagttgt gaatgaccag tatgcgacct attcccaaca
    15901 ggctatcttt gcctcttcaa cggtcaatcc aagcacgcgg tttatcaatg ctattattta
    15961 tgccttactt gcaggacttg gagcgctgag aattatggca gggcagttta cagtgggttc
    16021 actgacaact tttctcaatt atgctagtca gtacagcaag ccctttaatg atatttcctc
    16081 ggtcctatcg gaattgcaga gcgccttagc ttgtgcagac aggctgtttg ctatcttggc
    16141 tttagatagc attgacgatc aggctgagcg gaaaattgat tcagaggagt tgaagggagc
    16201 tatttccttt gacaatgtgt ctttctcata tagccctgaa cgttctctga tagaacattt
    16261 ggacattgat gtcgaagctg gacaaaaggt agccattgtt ggacctactg gtgccggtaa
    16321 atcaaccatg attaacctgc ttatgcgctt ctacgatgtg acggctggtc agattgtttt
    16381 agatggggtt ccgattagac agtacagtcg tgaggatctt cgcagacaga ttgggatggt
    16441 tttacaggag acatggatca aatctggtac cattcatgat aatattgcct atggctatcc
    16501 aaatgccacg cgggaattgg tcattgaggc ggctaaggca gctaatgcag acttctttat
    16561 tcgtcagctt ccgcaagggt atgatacagt tttggcagat ggaggagaag gcttatccca
    16621 agggcaacgt cagctcttgt ctattgcgcg tgtctttgtc aagataccta aaatcctgat
    16681 tttagatgag gcgacttcct ctattgatac acggacagaa attttagtac aagaagcatt
    16741 tgccaaattg atggaaggac ggaccagctt tattattgct catcgcctat caaccattca
    16801 atcagctgac ttgattttgg tcatggtgga tggaaaaatt gttgaacaag ggaatcatga
    16861 agcgttgatg gctgaacaag gcgtttatta tcaaatgcaa acaagtcagc agacagagga
    16921 ggatgaaagt gttagataaa ttaaacttac aaccgattac ggttttagat gactatcaag
    16981 ctacaatgct caatgagaaa gaggtgctac tgaccacaaa ggtgacggaa aaatctctca
    17041 atccatatgg tatggctcat ggaggcttcc tctttacttt agcagattca gtagcaggat
    17101 tgacaacagt ggttgggggt tcttattctg tcaccctgca gtccaatatc cattatatga
    17161 aggcggcaaa acttggtgat accttatccg tcactggttc ttgcacacat gatggaagta
    17221 gaacaaaggt cgttgaagtg aagataaaaa atcaagataa acagctactt gcttcagcaa
    17281 gctttaccat gtttgtaaca ggaaaagtag aataaaactc ttcgaacatc aaaagcagac
    17341 agtcttggct agattgagag aaaaaaactt cgttcgctct atttccaacc tcccaagttt
    17401 ccccaaacct ttgtagaaat gaacttcgtt cgctcaattt ccaacctcca aaggttcccc
    17461 aaacctttgg agctagtttg attttgatta taaacgatat aagggagttg gcaaaagctg
    17521 gctccctttc tttgtgttat actagatgta tgttagattt gaaagaatat ggaatcgaaa
    17581 tgtggccgga ggaaaagatt caagcttttc gcaaggcact cttagattgg tatgatgcca
    17641 ataaacgtga cttgccttgg agacggacca aggatccgta tgctatatgg gtttctgaaa
    17701 tcatgcttca acagacaaga gtagacacgg tcattcctta ttatgaacgt tttctccatt
    17761 acttgcctac gattagtgat ttagcacaag caccagagga ggtcattctc aaactctggg
    17821 aaggattggg ctattattcg cgcgtgcgga atatgcaaaa ggcagctcag caaatggtag
    17881 aagattttga tgggcaattt ccgactacgc atgcagccat ttcaagccta aagggcattg
    17941 gtccctatac tgctggagca atttccagta ttgcttttaa tttgccagaa ccagcggtag
    18001 atggcaatgt gatgcgggtt ctcagccgct tgtttgaggt tgattatgac attggtcttc
    18061 ctgccaatcg taagattttc caagcgatga tggagctatt gattgatcca gagcgaccgg
    18121 gcgatttcca ccaagcccta atggatctag ggtcggatat tgaatcgcca gttaatccac
    18181 gtccacagga cagcccagtc aaagccttta gcgcagccta cttaaacggt acaatggata
    18241 agtatccaat caaagcacca aagaaaaagc cgattcccgt ggcctaccag ggatttctca
    18301 tcaggaataa agacaatcaa tttttattgg aaaaaaataa tgaagcaggt cttctatcag
    18361 gtttctggtc ttttccgctt ttggaaaaag gagcaatcgt tgaaaaacaa gtctctctct
    18421 ttgaagttgc agaagaagtt gttcagccag atattcggca gagctttacg gaactttatg
    18481 gtctgactgt tgattggcaa gagcaagaat ttggcatcgt ccagcacatt tttagtcacc
    18541 gcaaatggca gatagaaatg gtagaaggtg tggcagaaac acttaacctt ccagaatcaa
    18601 aagaattgaa atgggtttct gtagaagatt ttcctaccta cccatttgct aagccgcaac
    18661 aaaaaatgtg ggaaaacttt atcaaggaaa aagaaaagca aaaaagttga ctttggagca
    18721 cataattatt tgaaagcgtt ttacaatagt ggtataatct aattgaaaaa aggaaatagt
    18781 tagttaagat gttgaacgcc atctgaattg ctgaaaggag ttctttagcg ttcgtagaag
    18841 tgtatatact attagccatc tttctctaat aaaaagagag ggatgctagt aggggaaaag
    18901 tccgttatcc ctgttttata tctatttgtg atatccattg tcaaatgcat agcattaact
    18961 cattatttag ccttgctacc cggttcaatc agaagtaggc taagattatt cgtgtcgtaa
    19021 ctactatgtg ttcaagatgt tgtaactttt gaacataacc ttagaaaatc acaaaaacct
    19081 ctagcgattt tcatcataat aagcaatctc cacactttag acaaatagta agaggacaat
    19141 caaagacata agggtagcag aataattatt taatcattaa cttgttgtca aataactatc
    19201 tggtaatgga cttttccaat ttgacatata aaagggaggc tgtcatagcc tccttttact
    19261 gtgcttttca gtttgttttc agtaggaaaa aacgccagct atacgaacag actttccaaa
    19321 actagatgga tgaatgtagc caatataact agtgattaac taggcttaga aatcaatctg
    19381 gactataaat atctacaact tgaccaatag gtcgaatatc gtcttctggg ctaaaataga
    19441 tatcatcata gtcagaattg agtgattgca aatagtcacc tttgaacttt ttaacaaaat
    19501 tttccccatt gactgaaaaa attccaatcg tatttagagg aatatgagga gttaggcgaa
    19561 tgaagagata gtctccatcc tcgatatgcg gagccataga atctcccaca acctgagcga
    19621 ttgtatcata agattggtta tctggaatct catcgttata gaatgataca agattgttca
    19681 tatctgtatc ctgccagtaa cctgtaccgg cagaaacctt accaggaaca ggtaaatcga
    19741 ttcgctctcg atagtcatcc aagtgaagaa tagaagcaga aggagtaatt gaggtagttt
    19801 gcatagctgc taactgttct tgaccaaaag ttaaccattg tgcatggaaa tcacctttta
    19861 attcattgtc caaggtttga acctctggat gaataggctg ttgaaagagt ttaaactggg
    19921 aaggagtaat cgttaaagca atatcctgat tagaatctag ttgctcgatt agctcaccaa
    19981 ccgatatagc catgccctta gcgacttttt ctagcgtatc catcgttggc aggagagctt
    20041 ttttggtttt gggatgctgg ttcttttcca acatagaaat ataacctttt gttaaaccag
    20101 ataattcagc gaatttatcc attgataatt tattcttgct tcggtattct tttaaaatat
    20161 cacctaaaat catggttgtc tccttatctg tttaaccaat tataccatta aaaaatattt
    20221 tttgcaaatt ttgtttaaca cgtttgacaa aaaatcaaaa cggtgttatg ataatctcac
    20281 aaaaaagaaa aataggagtc gcaaatgaaa aggatgacag agatttcttg gaatgatatt
    20341 tataaagagt gggaaaccta tgctaatcat tttggtttga cgactccgat aaatactgaa
    20401 aatttgcgag atcagaaatc gaaggatttt ggaaaaggaa gtctgattac gctggactta
    20461 ttagccgatt acgatactga ttctgagaag accgcagcta tttgggtagc ttcattttgt
    20521 agagatttaa tacaagatta cgcatattta ctaaatggta gagcctatct tacagtcaat
    20581 cagatttatt ttcaggcact caaacaattt cagtcaggag cggtaatatg gtcaaaacct
    20641 atcacacgat tgcaaccgaa gttatttgta tcttatcgtt tgttggaaaa tcttgatttg
    20701 agtcattatt cttgtgtagt tgagttagca atgttgcagg ctagtatggt tcggacacag
    20761 atattagaaa agtaattata gtaggagaat gaaaatgttt aatttgttga ataagaaagc
    20821 tgaagtatcg aaagttgcag agtattggaa tgatactttg atagaaaggg gaattttgag
    20881 cgctgatgaa ttgcttgaag gaaaatgctg gagatgtaaa agttctcatg gtgtagctgt
    20941 gtgtcagatt gtatcaagca aatggagcaa ggatgcgagc ctggctaatc agatggtcct
    21001 ctgtctatcc tgccagcatg aaaaacctaa tgtagctgat acagaaattg tgtggcaatg
    21061 gttagaagtt gagaatgatg aacgttactg gactctacaa ggtatggcag aatatgagaa
    21121 aatgtataaa aaatcagtac ttcaagagtt atgggatatg ggaattagag atggtgaaga
    21181 agtcgagacg cttgtaaata aagtaactag cctttctcgt aagaatgata ttgttttaaa
    21241 tagagcaacc ttagcaggat tatttcgctg tgaaattgaa caaatgcgtc gaaaggcatt
    21301 tctaaattgg acaggaattt ttaagctagt cagttaactg atgcagttgt aggaaaacat
    21361 ctcatgctga ttggagtaac agataaataa aaagcgcatc agcttagaat cttaaagaaa
    21421 gaagtctaat gatgcgttta taggattata tttcagctaa taaaaattgg agtgaatgtt
    21481 tttgaattat agctcaaaaa cgttagtcaa aaccttatta taccaacgat tatggcgctt
    21541 ttttggtgcc agttggtgtt aattataatg ataagtcgtt taagagactt aaagcatcgg
    21601 catcttgctg gtgctttttt tctggcatca attctagata atactgttgt gttgttaaga
    21661 tagagttatg acctagatga cgagaaatat agtctaggct aatatctttt gaaaagagaa
    21721 atgaggcatg cgtgtcacga agtccatgaa atgtcgtttt tgttaatccc aactgtttta
    21781 acagcttttg aagttgacta gcttgcttga atccattcca atcaaagata tagccttctt
    21841 ttgtttgtgc aagttttgtc acagcttgat aaacatcttc gttgatggaa atatcacgct
    21901 tagaatattt ggttttaagc cgggtatcgt cattagttgg actaattgat cgaagaattt
    21961 tgataccata ttcaaaaata tcttcttttt taattcctaa aagttctccg cgccttgcta
    22021 ctgtctcaag ggcgagagca acaagaacat taaattcatt ctcagtatga cttaggcagt
    22081 attgtctgag ttttttaaat tctgtgatag atttaggttg ttcttgtcct tttgatttca
    22141 aaagatgacc aaagtcatta ctaatcaaac cacgagcata cgcatatttt aatgaaccac
    22201 ggattttaag aacaagttct tttactgttt ttttagagtg ggtttcagcg tattggtcga
    22261 ttttcttttg catgacgaga tcgtcaaggt gtttaagttg aataccatca aaaaggtcat
    22321 caactattac aagagttcgt ttatagttaa taaaggtggc ttcgcgaacg tcagttttct
    22381 tgaccgtatg gacccaattt ctataaaaat caggaaataa ggtagatcgt tcggcaatgt
    22441 tcttgccacg acctttttca agttccattt ctaatgtcca aagctcagca tcttttctgt
    22501 tgctaaaggt tttagtttct cgtttatatt ctcctttctt ataaagtgat acagttgcac
    22561 ggtaagagtt accacgtttt gttattgttg ccattttatc agcctttcta taaaaaatga
    22621 ttgataaaat agactagtca catataggga tatatgaaaa atctaatttt atcaatcatt
    22681 atccgtcaat cgcagtggct ttcaataaat ttaaccagtt ttgacttcaa atagcgctct
    22741 tgttttccca ccataaagca ttgaaagtct gggtgacttc tgatgtactt atcaaatgat
    22801 ttaggatcta ttccaagtag ttccgctgct tgttgtctat ttaacagaag aggagaatta
    22861 ttttgaggta acatatagaa ttcctttcat tttctagata caagtattat gccacatgcg
    22921 taatgaattg aggctagatt tttgaaaatt gttcaatgtt acctaacgtt tcaataaaat
    22981 ataagcgtag gaacgaggaa attcctctgg tctattgtgt cccagagtct ttatcacaat
    23041 tttacaagct tttctgttga gtgagatgcc aactaactct ttacgcagat ggataacttc
    23101 tttacgattt ctaatcttgg agatttcgcg tgctacactg cgataaacac gctctgcata
    23161 ctctgtagga tatttgtgtg actttaatgc tgttggaact ttctttccat caaaatcgtc
    23221 gaggattaaa tctttgggaa catgaaagac tttcttttct cctgctcgtt ggaaaatagc
    23281 gactaaccac tcttcctcct cttgactagt ggccatgatt ggagaccagc gatctctgcg
    23341 tccttttgtg tgatgcttat ggccggctaa atttaaatac caacggccat cacggccgcg
    23401 ttgcagagca tcgccagtga cgtggattaa ttcacttttg cgtaagcctg tcgaggtaac
    23461 tactttatgc cagtagtcgt tatttttgtt ggataaacga tagtctttat gtaatacacg
    23521 attgttcata cgattcgcac gagtacgtgg ttgtgtagcg atgaaattag ttgaggaaac
    23581 tccgagaact ttggtcaatg ctactttgta ggtagcttgt gtatatggac ttaaaccaat
    23641 ctctatacaa tattgtaagt attgattgat aagttctatc caaccttccg tatctttttc
    23701 aacattacct aatgccatta actgttctgg cgaaatgtta attgaaaccc attttgcaaa
    23761 acaatgccat gaacctgaat agttatggag tgtacgatga gtgtggatta actcaatgct
    23821 ttcttttttc cttgcagtcg gttctaacga accgatgttt tgcgaaccgc gcaaaacctg
    23881 cttgcgaaga ttgctcgcat aataaagttg taattatcat ttaaaataat gttcaaaatt
    23941 ccaacacatt cttgtttatt tttgatataa tgtaaaaaaa caacaaagga ttaaacatga
    24001 ataaacgaga acgactagaa gaaattacac gattggtaaa caaaaaaggc acagtccgaa
    24061 tttctgagat tgttgaattg ctaaatgtta ctgatatgac tgttcgacgt gattttattg
    24121 aactggaaga gcaaggtgtc ttaacaaaaa ttcacggcgg tgctagaagt aataaggctt
    24181 ttcaatatcg ggaatactcc cattctgaga aacacattca gaataaggaa gccaagcaag
    24241 agatagcgga aagggctgca caactgatag aagatggaga cacggtattt ttaggtccag
    24301 gaacaacagt ggcctttttg gctgaggcca ttaaaaattc tcgcctaaca gtcatcacaa
    24361 actgtatgcc tgtttttacc atcctatctc aaaagaagac agaggagttt caagtctttc
    24421 ttctgggggg agaatatcgt caagtgacag aatcttttgt aggagaaatt accaatacaa
    24481 gtttagaaaa aatgcgattc agcaagattt tcttttcagg taacggactt aagggaactg
    24541 atgtcatgac ctctacccta gcggaagcct atacgcaaaa tattgccatt aaacattctt
    24601 tagaaaaata tctactgcta gatgcctcga aaattggaaa agatgatttt acttcctttt
    24661 gtgatttgca tgatgtaact gctctagtga ccgatatgaa tgcaaaggat gaaaattacc
    24721 aattattaag taagcacatc gaaattatca ctacaaaatt ataaagttat caaaaccaac
    24781 agaaaagtgt tggttttttg tttgtacacg aaaaaaacaa acaaaaataa aacaaaatat
    24841 gttgactttg tgtttgtttg gttgtataat ttaaacataa aaagcaaaaa cgctttttct
    24901 aagttttgca aaacaaagat tttctgccaa atatggctac aactttctat ttttgttagg
    24961 agataggtta tgacaatcat tatcggtgct gatccagcgg gttcaaaact aaaagacgtt
    25021 attaaagatt atttgctaga aaaatcatat gactttaaag atgtcagtga tggaagtgat
    25081 tttgttgata caactttggc agtagttgca gaagttaatc aacaggaagg aaatcttggc
    25141 attgtgattg atgcttatgg tgttggtcca tttatgaccg caactaaagt caaaggcatg
    25201 attgctgcag aagtttcaga cgaacgttct gcctatatga caagaggaca caacaattcg
    25261 cgtattatta caatcggtag tgagattgta ggagaaggaa ttgctaaaaa tatcgttaaa
    25321 ggatttgttg aaggtgagta tgatggtggc cgtcaccaaa ttcgtgtcga tatgctaaat
    25381 aaaatgtgct aattgttgta aacaaaggag aataagagat gaaaattgca atcggttgtg
    25441 accacattgt aacctatgaa aaaatcgctg tggtagatta tttgaaaaat caaggatatg
    25501 aagtgttgga ctttgggact tatgacaatg ttcgtactca ttacccaatc tttggtaaaa
    25561 aagttggcga agctgttgca agcggacaag cagatttggg tatttgtatc tgtggaacag
    25621 gtgttggaat caacaatgct gtaaacaagg ttcctggtgt tcgatctgcc ctggttcgtg
    25681 atatgacctc cgcgctttac gcgaaggaag agttaaacgc caacgtcatt ggttttggtg
    25741 ggaaaattac aggtgagttg ctcatgtgcg acatcattga agccttcatt aaagcagaat
    25801 acaaaccaac tgaagcaaac aaacgtttga ttgaaaagat tgctgcagtt gaaacgctca
    25861 atcaagagca ggctaatcca gagttcttta ctgaatttct tgaaaagtgg gatcgtggag
    25921 aataccagga ctaggaggct cacatgattt taacaatcac tttaaatccg tcagttgata
    25981 ttgcctatca attggatacc tttcatttgg atacggtcaa tcgagtagaa aaagttcaaa
    26041 aaacagctgg tggtaagggg ctcaatgtta cacgagtttt gaaacaaatc ggtgaagatg
    26101 ttgtagcaac aggctttatt ggcggtgaga ttggaagtta tgtaaagaaa caactcactc
    26161 gaaatgatat taaaaattcc tttgtggaaa ttgggaatga aacacgtaac tgtattgcgg
    26221 ttcttcatga tggacaacag acggagattt tagaacaagg accaactatt caagaacacg
    26281 aagccttgaa ttttatcgaa caccttgaaa tcatcctgaa caatgtagat gttgttgtta
    26341 tttcaggaag tttgcctaag ggacttgcta gcaattatta tgttcagctt gtagagcttt
    26401 gtaaaaaatt tggcatagct gttgttttgg attgttctgg tgaggcgctg aaaaacgttt
    26461 tagaaagcca gcagaagccg acagttatta agccgaatac agaagagtta tcacaactga
    26521 ttggtaaaga agttactgat gatattcaag agttgaaatc agttttgtct ggtcaacttt
    26581 tccaaggaat tgattggata gtcgtctcat taggggcaca gggggctttt gccaagcaca
    26641 atgacaagtt ctatcgtgtc agaattccaa aaatcaaagt cgtcaatcca gtaggatcag
    26701 gagattcaac tgttgcaggt attgcagcag gtttggtaca cgctttacct gatgcagaat
    26761 tactaaaaaa tgctaatgtt ttaggcatgt taaatgccca ggaagaacag acgggttacg
    26821 tcaatttaga aaatgcagaa tcgttgtatt ctcaaatcga agtcgaagag gtataatatg
    26881 gtagtaacag cagacaaaag aaaatacatg gaaaaagtaa gcaatgaagc aggtattatt
    26941 tcagctttag ctttcgacca acgtggagcc ctgaaaaaaa tgatggcaaa acatcaggca
    27001 gaagaaccta ctgtggaaca gatggaagaa ctaaaaactc tagtttctga agaattaaca
    27061 cagttttctt cctcaattct gttagatcct gaatttggtt tgccagcatc acgggcccgt
    27121 gacgagcagt gcggtttgct tttggcttat gaaaaaactg gctatgatac cagctctact
    27181 agtcgcttac cagattgcct agtagagtgg tctgtgaaac gactaaaaga agaaggtgca
    27241 gatgccatta aattcctact ctattatgat gtggatggag attcatacgt caatcttcaa
    27301 aaacaggcct atattgaacg attgggttca gaatgtcagg ctgaaggttt accattcttc
    27361 ttggaaattt tgagctatga tgaaacgatt gaagacaatg ccagtgtgga atttgcaaaa
    27421 gtcaaacctc gaaaagtaaa tgaggctatg agagtttttt cggatgaacg atttggagtg
    27481 gatgttctca aggtagaagt acctgtgaat atgaattttg tagaaggctt tggaacagga
    27541 gaagtcgtct atacaaaaga agaagcagct gaatatttcc gtcaacaaga agcatcaact
    27601 catttgcctt atatttatct aagtgcaggt gtttctgcaa aactcttcca agatactcta
    27661 gtgtttgcac atgaagcagg tgctaaattt aacggtgttc tttgcggtcg tgcaacatgg
    27721 gcaggtgttg tgccagtcta tattgaacaa ggtgaagaag ctgcgcgtga atggttacgc
    27781 agtgttggtc gtgaaaatat cgagggactt gatgcagtct tgtctcaaac cgcaacttct
    27841 tggctagaaa aataattgaa aaataaccat tttcttaaaa gaaagggttt acattttctg
    27901 agaatatgct ataataatct catcagcaag aatagagtgg attgtaacta attcgattag
    27961 gcaagactac aaatggattt gagagtagga tattctcggt ttgtttgtag tctttttttg
    28021 cttaaaaata taggagggat atatgtttag gattatacag tcactaaata ataacgctgc
    28081 cctggtgaaa aatgaacatg gggaacaggc agtcgtgatg ggattaggta taacctttca
    28141 aaagaagaaa ggggatttaa ttgttaagga caagatagaa aatatctttt cgctaaaaaa
    28201 tgatgaagcc aaagaaaatt ttctaacctt attaaaagat attcccttag attttatttc
    28261 ggcaacctac acggttatta atcatctgat agaaacttat cattaccctg tacaagaata
    28321 tctatatgtg acactgacag atcatatcta ttgtgcatat caggcggttt taaagaatac
    28381 ttatcaagaa agtaggctac ccaatatttc agccgaatat ccattggaat ataaaatggc
    28441 gcgtgaagcc ttagctatgt ttcgtgaaaa gttgctaaat gattttccaa atgatgagat
    28501 tggtagaatt gcacttcact taatcaatgc aaagggtgaa accattcatc ccactagtga
    28561 agaacatgac atcagtaaga aaattattgc tgaggttgaa caaattttga tagagaatgg
    28621 gattaaacgt tcaaaagaaa atagcaattt ttatgatcgc tttatgattc atttgtccta
    28681 ttttctgaat tacttagata gatcccatca gtcaaatgaa tcgattgcta gtttggaaca
    28741 gtacatcaag ctccagaatc caagagccca tcaggttgga agtcagattt ttgagatgat
    28801 tacatcattg gttgatgagc cagtaaatga tagtgaaagg ttctatattg tactacatat
    28861 tcaacggtta ttgtaaatca attcaatttt aaaaggaggt tcatattatg aacagagaag
    28921 aaattacttt attaggtttt gagattgttg cattcgctgg tgatgctcgc tctcgtttga
    28981 tggaggcact ggctgctgct caaaaaggtg attacgcaaa agcagaagaa ctagttgaag
    29041 ctgccaatgc ttgtattgtt gaagcccacc atgctcagac aagtttgttg cagaaagaag
    29101 cggctggtga ggatttagcc tttagtgtga cgctcatgca tggtcaagac catctcatga
    29161 cgacattatt attgaaagat atgatgggtc atatgattga actttacaaa cgaggtgata
    29221 agtaatgaat aaattgattg aattcattga gaaagggaag cctttctttg aaaagatttc
    29281 gagaaaccct tatttaaggg ctatccgtga tggttttatc gctgccatgc cggttatctt
    29341 gttctcaact ctctttctaa tggtagcatt tgtacctaat atctttggat ttacttggtc
    29401 tgatgaagca gttgcggcta tcatgaaacc ttacggttat acaatgggta ttgtagctgt
    29461 cttagttgca ggaacgaccg caaaatcttt gacagatgcg tttaaccgtc aattgccaaa
    29521 aaccaatcag attaacttca tttcaaccat gattgcctca atttcaggtt tcttattact
    29581 ggcttctgat ggtattgaag gtggatttgc caatggttac atgggaacta agggactttt
    29641 gacagccttt ctggcagcct tcattacggt taatatctat aaggtctgtg tgaaaaacaa
    29701 tgttaccatt cgtatgccag acgaagttcc accgaacgta tcccaggcat ttaaagatgt
    29761 gattccatat cattgtctat ctttgtcttg tatggaattg atcttgtgac acgtcaattc
    29821 cttggaacaa acgttgctga ggcgatcctg aaattatttg agcctctatt tacagccgca
    29881 gatggttatg ttggtattac aattatcttt ggtgcctatg ctttgttctg gtttgtaggg
    29941 attcatggtc catctattgt ggaaccagca attgcagcca ttacttatgc caatattgaa
    30001 accaacttcc agcttctaca ggcgggtcaa catgcggaca aaatcctgac ttcaggtact
    30061 caaatgttta tcgtaacaat gggtggtaca ggtgctacct tggttgtgcc attcatgttt
    30121 atgtggttga ctaagtctaa acgaaataaa gcaattggac gtgcttcagt tgttccaact
    30181 ttctttggtg taaatgaacc gatcttgttc ggtgcaccac ttgtactcaa cccagtattc
    30241 tttgttccat tcatcttagc tccaattgct aacgtatgga ttttcaaatt ctttgttgat
    30301 acgctaaaaa tgaacagttt cagcgttaac ttgccatgga caactccagg accattgggg
    30361 attgtaatgg ggacaaactt tgctccactt gcctttgcac tagctatctt attggtagtt
    30421 gtcgatgtac ttatctatta tccattcttg aaagtttacg atgagcagat tctcgctgaa
    30481 gaacaatcag ggaaagttga aaatagtttg aaagagaaag tggcggctaa ctttaatact
    30541 gccaaagcgg atgctattct tgaaaaagct gcagtcgaaa ccgaaatttc tgaacaaaca
    30601 aatgttttgg tactttgtgc aggaggtggg acaagcggct tgcttgccaa tgctttaaca
    30661 aaagctgcaa aagaatacgg tgttccagtc acagcaacag caggaagcta tggggcgcat
    30721 cgtgagattt tgccagagta tcaattagtc attctagcac cacaagtggc atcaaactac
    30781 gatgatatga aacaagaaac cgatgcattg ggtattaaac ttgccaaaac tgaaggggct
    30841 caatacatta aactcactcg tgatggtcaa ggtgctcttg actttgtcaa acaacagttt
    30901 tagaacctat attcacagtt cagcacttcc atctaaggct agtctttcag ctactcatcg
    30961 ttagtttttt tcaaaataca gtcagtattc cctcaaaaaa ctgccttgat tagcgaaaaa
    31021 ctatctctta tatacaagca cttcacttgt gaatacaggt tcttaatcaa aaggggaggg
    31081 agttatcatc tccaactcct acccctttat ttatttttga tagaagaagg taggcatatg
    31141 gttaaaacat taccaaaaga ttttatattt ggtggagcaa ctgctgcata tcaagcagag
    31201 ggtgctacac agacggatgg aaaaggtcgt gttgcatggg acaagtatct agaagataat
    31261 tactggtaca ctgcggaacc ggcttctgat ttttataatc gttatccagt tgatttagaa
    31321 ctaagtgaac aatttggggt aaacggcatt cgtatttcaa ttgcgtggtc tcgtattttc
    31381 ccaacaggct ttggagcagt gaatccaaag ggagtagagt attaccataa attatttgcg
    31441 gaatgccata aacgtcatgt agaaccattt gtaacgcttc accattttga tacaccagaa
    31501 acgctacatt ctaatggtga ctttctaaat cgagaaaata ttgagcactt cgtcaattac
    31561 gcagcgtttt gcttcaaaga attccccgaa gttaattact ggacaacctt taatgaaatc
    31621 ggtccaattg gtgatgggca atatctagtt gggaagttcc caccagggat tcagtatgac
    31681 ttagctaagg tattccaatc tcaccacaat atgatggttt cacatgccaa ggcagttaag
    31741 ctctacaagg atgctggtta tagtggagaa attggtgttg tacacgcatt gccaacgaaa
    31801 tatccttatg atccaagcaa ccctgacgat gtacgtgcag cggaactaga agatattatt
    31861 cataataaat ttatcctaga tgcaacatac ttgggttact attctgaaaa aacgcttgaa
    31921 ggtgttcgac atattctgaa agtaaatggt ggggaattag accttcgtga tgaagacttt
    31981 gctgccttag atgccgcaaa agatttgaac gacttcttgg gcatcaatta ctatatgagt
    32041 gattggatga gagctcatga tggagaaacg gaaattatcc ataatggtaa gggtgaaaag
    32101 ggaagttcta agtatcaaat caaaggagtt ggtcgtagag agtctccagt tgatattcca
    32161 aaaacggact gggattggat tatctatccg caaggccttt atgatcaaat catgcgtgta
    32221 aaaaatgact atccaaacta taagaaaatc tacatcactg aaaatggtct aggctataaa
    32281 gatgaatttg tagatggtac agtctatgac gatggtcgaa ttgattatgt gaaaaagcat
    32341 ttagaagtga tttcagatgc tatctcagat ggtgccaatg ttaaaggtta tttcatctgg
    32401 tccttgatgg atgtattttc ttggtcaaat ggatacgaga aacgatatgg tttgttctat
    32461 gttgactttg agacccaaga acgttatcca aagaaaagtg cttattggta taaaaaagta
    32521 gcagaaacac aggttattga ataaaaaagt aatacaagga tgcttagctc aagttagcat
    32581 ccttgttttc atataaggga ggcagttttt atgctcgaat taaaaaatga gaacttaaca
    32641 gtacaatttt ctgaatttgg tgggcaaatt atttctatta aagacaagga tggtatcgaa
    32701 tatctttggc aaggcgatcc gacctattgg agcggtcaag caccagttct atttccgatt
    32761 tgtggaagtt tacgaaatga ttgggctatc tatgaacctg cagaaagacc gacatttaca
    32821 ggcacaattc caaggcatgg acttgtgaga aaaatgctgt tcaaaaatgt aagtagcact
    32881 gaaaactctt tagaattttc tatttcatca aacgaagaaa ccgtaaaaaa ttaccctttt
    32941 gaatttgaac tttccattaa ctactcacta cttggcaata caattcgaac tgaatatcag
    33001 gtgaaaaacc ttgagggaca tagaaagcta ccttacttta ttgggggtca cccaggtttt
    33061 aattgtccct tgttggatgg tgagagttat gaagactatt atttagaatt tgaaaaagta
    33121 gaatcttgta cagtacctag aagttttcca gaaactggct tacttgatct gcgagaccgc
    33181 cagccattct tggaaaatca aaaaaccttg gacttgtcct atcaattgtt tgagcatgat
    33241 gccatcacat tggatcaatt agcatcacga aaggtaacct tgaaatcaaa aaatcatcag
    33301 aagaaacttt cgattgcatt tgatgatttt ccatatttag tgatttggtc aactacaaat
    33361 cagagtccct ttatcgcatt agaaccatgg atcggactct ctacatcact ggaagaatct
    33421 gacatattca atgccaaacg aagtattagc tatgttgctc caaaagaagt tgataaaaaa
    33481 cattttgata ttattattga gtaaatacca tagttaagta atttaaatac tctacggaaa
    33541 acactcaaaa ccccactggc tgaataagtc agtggggttt attgcttaat ttaatattat
    33601 gaaaaattaa attaatac
//
LOCUS       DASGCC010000004        33340 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.004, whole genome shotgun sequence.
ACCESSION   DASGCC010000004 DASGCC010000000
VERSION     DASGCC010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 33340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33340
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.004"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            22..945
                     /locus_tag="U1404_000105"
     CDS             22..945
                     /locus_tag="U1404_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM5347100.1"
                     /translation="MKKILFSFALLLSLIGLGACRPSQTTEGSSKPRVAVTTSFLNDM
                     VYQLAGDEVERDLLIPAGEDPHLYVAKSSDLSKLQKADLVLYHGLHFEGKMVEALEKT
                     GVAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEELQKLLPAKAEMIQ
                     KNAEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTD
                     SEVANSDMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVTGEGKEL
                     FSDSLAPEGEEGDTFIDMYKHNVKLMVKYLK"
     gene            complement(1186..1512)
                     /locus_tag="U1404_000106"
     CDS             complement(1186..1512)
                     /locus_tag="U1404_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347101.1"
                     /translation="MIADMFPPIFKNDMPHSYSMKIKTRPTYQAEKVDKIKIPYQQIA
                     GKPYTSLISTHQYMNLIFAEHQCFLQSYVYKSVKNGPKTERTRPRPSPFYYSFEIPIH
                     AQTTDI"
     gene            1499..2269
                     /locus_tag="U1404_000107"
     CDS             1499..2269
                     /locus_tag="U1404_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM5347102.1"
                     /translation="MSAIIELKDVNLAYTASQTMALEDVNLVIPRGSRTAIVGPNGAG
                     KSSLFKVILGLEKPDTGQVRLLGQEAGLERLIAQKVAYIPQSSQVNWQFPATVFEIVL
                     MGRFAHSKGMFRRPTKADRQIVEQALERLKIADLRHRQIDQLSGGQRQRVFLARALAQ
                     EAELYLMDEPLAGIDQATEIMIMDMLKEFQCEGKTSIVIHHDLTTLDAYFDHLVWLHK
                     HVIDSGPMDETLTSENYQATYGIGNGLFLGNAKGGSHV"
     gene            2262..3122
                     /locus_tag="U1404_000108"
     CDS             2262..3122
                     /locus_tag="U1404_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5347103.1"
                     /translation="MFEVFKEYSFWTVALGTVSLAVAASTIGSISVLTKQSLLGDALG
                     HASYPGVIVSFMIFQSRHPLYLLLGAVLSGYLSYVLVHWLRRKGGHSLVNALSLVSAS
                     FFGLGMVLKNAIQGNEAFAGSSQAGLQTYLFGQAAFIQLDDVILIGIISLLALALFTF
                     FYQDYKLYLFDQTFARVIGVRVKYLQQLTMFLMICLIAVGLKLVGAILMSSFLIAPAV
                     FGLMLGKSYHKSLLLAGIVAIGSAFVGTWISSSVSGLSTGPTIIVCLTGLTLSAFVYV
                     TYVRKENGRV"
     gene            3115..3954
                     /locus_tag="U1404_000109"
     CDS             3115..3954
                     /locus_tag="U1404_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5347104.1"
                     /translation="MFEVLLILMVIASSCGLLGSILVVKNQSMLADALSHSVLLGIVL
                     GFFISHSLDSPLLIVGASLFGLLSVLAIDRLHSRKIAHDAATGLVFSFFFAVAVLLIS
                     LFARNVHLDVDLVLQGEVLFAPLHRMDVLAWSLPVSLVKSSLAWLVIVLFFAWAYHRL
                     QVYLFDSNHARLSGLRTRILEMVILILVSLTTVLAFEAIGSMTVIVFLVAPSMAALRW
                     VKSFWQLLLLGQGIAILTVVLGFLVANQLDLTMSGTCAVVSLLVVCSSIILKNTWSRS
                     SDK"
     gene            4010..5902
                     /locus_tag="U1404_000110"
     CDS             4010..5902
                     /locus_tag="U1404_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
                     /protein_id="HEM5347105.1"
                     /translation="MTRLQDDFYEYVNGEWAKTAVIPDDKPRTGGFSDLADEIEKLMI
                     DTTNAWLAGEDVPEDSVLQNFVAFHKQVADYETRDRLGAEPAQALIAEYKALNSFEEF
                     TSKLAEYELAGKPNLMPFGVAPDFMDATTNVLWADSLGIILPDTTYYEEGHEKGAELL
                     KIWRESQEALLPKFGFSDEEIKDLLDKRLELDATIAKYVLSNEEGSEYAKLYHPYEWA
                     DFTALAPELPLDDFFTAILGQTPDKIIVPEERFWQAAKDIYSADNWELLKATLILKAA
                     GAYTAFLSDEIRILAGAYSRALSGTPQAQNQEKAAYNLAQGYFNQALGLWYAGEKFSP
                     EAKADVEAKVAKMIEVYKSRLETADWLAQETRDKAIVKLNVIKPYIGYPEALPERYYK
                     KIVDPSKSLVENAIELNKIDIAHGWSKWNKPVDIKEWGMPAHMVNAYYNPQKNLIVFP
                     AAILQAPFYSLEQSSSANYGGIGAVIAHEISHAFDSNGASFDEHGSLNNWWTEEDYAA
                     FEARTQQVIDQFEGQDSYGAKINGKLTVSENIADLGGIAAALEAAKSEDDFSAEEFFT
                     NFARIWRMKARPEFMQMLASVDVHAPGHLRTNIQLPNFDEFHETFGVQEGDGMWRAKE
                     DRVIIW"
     gene            6005..8506
                     /locus_tag="U1404_000111"
     CDS             6005..8506
                     /locus_tag="U1404_000111"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEM5347106.1"
                     /translation="MSFYNHKEIEPKWQGFWAKNHTFKTGTDAAKPNFYALDMFPYPS
                     GAGLHVGHPEGYTATDILSRYKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPADFTA
                     ENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVE
                     ELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLNDLEEVDWPESIKD
                     MQRNWIGKSTGANVTFKIKDTDKDFTVFTTRPDTLFGATYAVLAPEHDLVDSITSPEQ
                     TEAVAEYKRQASLKSDLARTDLAKDKTGVWTGAYAINPVNGKEIPIWIADYVLASYGT
                     GAIMAVPAHDERDWEFAKQFGLDIIPVLEGGNVEEAPYTEDGAHINSDFLDGLNKEEA
                     IAKMVAWLEENGVGQEKISYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPENELPLV
                     LPKTSDIKPSGTGESPLANLTDWLEVVREDGVKGRRETNTMPQWAGSSWYYLRYIDPH
                     NDEKLADEDLLKAWLPVDIYIGGAEHAVLHLLYARFWHKFLYDLGVVPTKEPFQKLFN
                     QGMILGTSYRDSRGALVATDKVEKRDGSFFNIETGEELEQAPAKMSKSLKNVVNPDDV
                     VEQFGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLLTTKELAAENSGALD
                     KVYNETVKTVTEHIEDLKFNTAIAQLMIFVNAANKEDKLYVEYAKGFVQLIAPFAPHL
                     AEELWQGLTNTGQSISYVAWPTYDESKLVESEVEIVVQIKGKVKARLTVAKDLAPAEL
                     EKVALADEKVQAEIAGQTVVKVITVPNKLVNIVTK"
     gene            8775..10136
                     /locus_tag="U1404_000112"
     CDS             8775..10136
                     /locus_tag="U1404_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5347107.1"
                     /translation="MLKTLKLVTIGGGSSYTPELVEGMILRAHQLPIREWWFVDVEQG
                     AKKQEIVVELARRMVAKAGLDWKIESTLDRREALIEADFVTSQFRVGQLPARYLDETI
                     PLSYGMLGQETNGAGGIFKAFRTIEAYKGIIKDMKDLCPNAWLINFTNPAGIVTEAIA
                     NELHWKKVIGLCNIPIGQKKLAAQILGQSEGDLSTRHIGLNHFHFHEVWDKYGENRTQ
                     VILETLYGDLREETPEAVKNITNLEFPIQLLRTIGMLPCDYHRYYFLEQEMLEDALEQ
                     YRQGNVRAKVVQEVETELFELYKDPQLKDKPKQLELRGGAYYSDVACQIICAIHNDSR
                     EELTVSTVNRGVIPYLPENCVVEVTSIISAQGATPLACPPTPPIVTGYLQLMKQMELV
                     TVQAAMTGDYSLALQAFTLNPLISNGPQAEVLLQDMLLAHENYLPQFAPAIQHIKERR
                     NNQ"
     gene            10133..11533
                     /locus_tag="U1404_000113"
     CDS             10133..11533
                     /locus_tag="U1404_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5347108.1"
                     /translation="MTKDKVFYQFPTNFLWGSSTSGPQSEGIEPGDGKGQNNWDYWYS
                     IEPERFHNKIGPSQTSTFYKHYEKDIDLLVETGHTVFRTSIQWSRFIPTGTGEINQEA
                     VSFYRSVFSLVRAKGIQLFVNLYHFDLPYCLQEKGGWENKEIVRAYEAYARTCFELFD
                     DLVDRWITFNEPIVPVECGYLGNYHYPCKVDAKAAVAVAYHTQLASSLAVKACHEVNP
                     HKKIAIVLNLTPAYPRSEQAEDIKAARIAELFQTKSFLDPSVLGEYPDELVELIDAYG
                     LMPEVSDEELAIIKENRVDFLGVNYYQPLRVQAPTNSWKEGEPLTPEHFFAPYDMPGK
                     KMNPHRGWEIYEKGIYDIAINIKENYHNIEWFVTENGMGVEGEGAFKDNGLIQDDYRI
                     EFIEDHLIELHRAIQEGANCKGYMLWTFIDCWSWLNAYKNRYGLVELDLDTQERIVKK
                     SGKWFKKLSDANGFHR"
     gene            11543..12649
                     /locus_tag="U1404_000114"
     CDS             11543..12649
                     /locus_tag="U1404_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HEM5347109.1"
                     /translation="MVELGFSIYPENYSLEESQAYIKLLHQYGARRLFMSLLQLENGD
                     RTVFELYQKLVDYANQLGMTVIADISPHFIAAQGWDGALMERAAELGLAGIRLDEALP
                     LEEIIEMTHNPHNIKVELNLSTDRTLLSNLLASVANRDNIIACHNFYPHAYTGLSQEH
                     FLEMSSFYYQSGIRTAAFVSAQTASEGPWPLSEGLPTLEDHRFWLLPLQIAWMKATGF
                     IDSILISNQFISEEELQSIQTVLNEDTISLMVDIEEGLTPVEREIVAFDHVYRGDISA
                     YVLRSTMPRVVYKDASVPARSDQAIPVGRGDILIDNDLYGRYKGELQIALKEFTISPK
                     VNKVGRISPDYLPLLRFIKPWQEFKLVIASEHFH"
     gene            12741..14735
                     /locus_tag="U1404_000115"
     CDS             12741..14735
                     /locus_tag="U1404_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5347110.1"
                     /translation="MLSKKEVRLLEALLAKQETFVPSIELAKVLSVSDRTVRTYIHQL
                     TSSLENSGAHILSKQGSGYCLQIERPVEFEMFWQEQLLLKKRLTDLTQLEEAGDRQRY
                     ILNKLLFEDPVQSPECLQRELFIGKTTLHSILADIRKLFIPYQLELLVTRKGIELKGD
                     EPAIRHFIMDYFFDEGNVQSVYGVVETNLLPDIRFTDLMLIVLDECRDAKLRLSDFVM
                     QNLVLHIALLLQRLKIGSGLDRFPIPERIQSSQEYLVAQRIIERIEEMFQVTIPSEEA
                     NYIALHLKVKLTGNPNQDGEVEEIFRQNVENSLLHLSHLTGLELSKDQQLFKGVLAHL
                     MPLRIRLENNIQLGNPLTAEIKDQYFEAFELTKTAFAAIPELMGYSISDDEWAYLTLH
                     VMAAIERYQGFKKTRVLVVCATGIGSALMLKNRLEKEFSSSLEILDTVSYYEVTEERL
                     KDVDLIISSISLSNLIFMTPVINVSVFLSEKDIEAIRSHLQQTTPVIPDQGESVLMEV
                     GQAKQIAEAVFAPHRIIYLEEDCDREVALKQLVTTLNESIEPDFVNRFIEQVNLRESY
                     SPVVFGDWLAFPHPALPMSYSEQIVVGIYKNAVDWGHGKQVQFVFLLSPSKGRNAFLK
                     YISPCLVDFVQDRVLQERLLHHPNYKELIDIFIPLIQRKG"
     gene            14748..15059
                     /locus_tag="U1404_000116"
     CDS             14748..15059
                     /locus_tag="U1404_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5347111.1"
                     /translation="MKHIMLVCNAGMSTSMLVTKMQKASEETGVEATIWAVPVSEADN
                     EVAQKEIDVLLLGPQVKFLLNDYKAKFEPTIKVDAINMMDYGVMNGAKVLEAALKMME
                     G"
     gene            15061..15375
                     /locus_tag="U1404_000117"
     CDS             15061..15375
                     /locus_tag="U1404_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5347112.1"
                     /translation="MNSPEYLEAIMGLIMYGGEAKGFASQAIQAAKEGRIDEAEQLLQ
                     DAIASLNIAHKSQTQLLAKEASGESVELSLLMVHGQDHLMNALTFIDLAKEFVDLYKQ
                     IG"
     gene            15394..15834
                     /locus_tag="U1404_000118"
     CDS             15394..15834
                     /locus_tag="U1404_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3284 domain-containing protein"
                     /protein_id="HEM5347113.1"
                     /translation="MKISKIGQVPIERLFATIRQSLKDDFQQNTGSILQDQDIIQGLT
                     YTKTFGDKGQHSVKVTVEEFTAPYCYAVCFHSNRGKEHVRYQLEDLGNDQTNIEYSYE
                     MEAGDIFVKGNQFLMEKIFSKSIKRQTNAQLEALIRCSVEPVSV"
     gene            15878..17254
                     /locus_tag="U1404_000119"
     CDS             15878..17254
                     /locus_tag="U1404_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5347114.1"
                     /translation="MSNISEKFMEISGKIGSQRHLIAIRDSFISMMPITMAGTVAVLL
                     NVFLRDIPNNMGWTGFADAMQPVIDINGYVYFGTIGIMALVFAFTFGYNLSLMYKVNP
                     LAGGLISFASFISTIPQSVTISTTLDGVDKSVVSALEGLGLSIVTTDGVSALETSQWG
                     AIALKYGGATGLFTALFIGFLATWVYASLVKRNVIIKLPDSVPPAVNKAFAAIIPGTA
                     AIYASSIVAYLAFTLTGQSLGDLVSTYIQLPLLGLSQGLGSVILLTFLVQLFWFFGLH
                     GHNVLAPIMDGVYMVALNENAAAYTATHSTANLPWLWTRGSFDAYAQMGGSGVTLALI
                     IAIFIFSKREEYKMVAKLSAPMGVFNINEPVTFGIPMVLNPLFAIPWLIVPPICATIA
                     YLATAAGIIPPVFAPVPWITPPGLYAYLATGGNIMAALVSLFNLFVAFLIWTPFVIAA
                     NKVKAGEE"
     gene            17587..18195
                     /locus_tag="U1404_000120"
     CDS             17587..18195
                     /locus_tag="U1404_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5347115.1"
                     /translation="MSYQMIKKQFKLGLFTALIGNLLWLGMVNVSADDTVISDSPTVS
                     ALTKKVEAAKIAAKAAAEKIVAEKAAAAAKAALATNMVSEVAVEYTANTYPAGQCTWG
                     AKEMAPWVGNYWGNGGDWAASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAAN
                     GHIQVKESNYGGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV"
     gene            18347..19150
                     /locus_tag="U1404_000121"
     CDS             18347..19150
                     /locus_tag="U1404_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5347116.1"
                     /translation="MKKIAMFTSLLFAGIVLAACNSSAGISNSTDQTLLAQIKEEGVI
                     QIGTEGAYAPYSYHDESGKLVGYDVEVAEAVAEKLGVKVEFVETEWDSMIAGLDAARF
                     DTIANQVGITDERKAKYDFSTPYTYIYGALVTQKDNTDITSFADLSGKKSANSLTSNW
                     ADLARENGAEVVGVDGFSQAVELLNTGRVDATINDNLVYLDYVKQHADAPIKVVTLTD
                     DVSTTAFPVAKGNEDLAKEIDAALAELASEGKLVEISNKYFGEDVSKAK"
     gene            19163..19822
                     /locus_tag="U1404_000122"
     CDS             19163..19822
                     /locus_tag="U1404_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5347117.1"
                     /translation="MTERVWQLLLDSFSQILVPGLLVTIPLTILSFTFGLLIAIGTAL
                     VQIAQIPILKQVARFYIWVVRGTPLLVQLYVIFFGLPSLGIVLDAFPSAVLVFSVNTG
                     AYAAETIRASIESVPKGQLEAGYSVGMSFAQTMRRIILPQAFRVAFPPLSNTLIGLVK
                     DTSLAANITVLEMFMATQQIAARTYEPFALYCEVALVYLLFSTILTKLQAYGEKKLAV
                     Y"
     gene            19832..20578
                     /locus_tag="U1404_000123"
     CDS             19832..20578
                     /locus_tag="U1404_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5347118.1"
                     /translation="MIQASGVKLTFGGQQVLKGIDVEVNPGEVVVILGPSGSGKTTLL
                     RSLNFLEKADAGHLVFGEDSYDLAQMTKKEIAGIRKRTAFVFQNYNLFANKTALQNVT
                     EGLIVARKVPKQEAERIGKAALDKVGLSGKYGFYPSQLSGGQQQRVGIARAIATNPEV
                     IYFDEPTSALDPELIGEVLAVMMQLAKEGMTMVVVTHEMGFARAVADRVIFMDGGRII
                     EEGRPEDIFDRPQEERTKQFLARIQKVDVE"
     gene            20943..21884
                     /locus_tag="U1404_000124"
     CDS             20943..21884
                     /locus_tag="U1404_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5347119.1"
                     /translation="MTTLADVARLANVSKMTVSRVINHPEQVTQELRTLVTAAMEELN
                     YKPNVAAKALAQQRTLVVQAVILEKMDVVEPYYIDLLAGIADELNHRNYTLQLVTNPS
                     QITDQCDGYIVTGARKNDYPWLKGLRKPLILFGENQEGLPFVDSDNRLATRSATQFAL
                     SKGYERIVFVGIDLPEAFEKGREEGYKDAMQGRETHLYRLENRSRVAEEFVKNLDYLP
                     ENTCFICASDRLALGVTRGLQALGKSIPNDVGVIGFDGFFLDRMSRPALTTMKQPIRQ
                     MGALSVKHLMTILDGKPLARQGHYCQATLIERETTPQ"
     gene            22065..28370
                     /locus_tag="U1404_000125"
     CDS             22065..28370
                     /locus_tag="U1404_000125"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pullulanase"
                     /protein_id="HEM5347120.1"
                     /translation="MKKKSVQNMKRTGMLEKKQIFGIRKLNVGVASVGIAAALFLSGA
                     GQLVQAEEVVLPASTSSTTLSEQDGGAVEATTTAIEATDSMVAEATAVTETADATAPE
                     EAPIEEGSIRLHFENVDETAPESQGLWTWGGVAEPSDSNQWPTDTANFSSSQVDDYGH
                     YVDIKKSETPGTIGYLVLKNGEKITESDQKVELLVPEQNEAWISSDYSVSSYEPLKDE
                     NVLRINYTREDNNYEGWGVWTWGDTTEASDGWPTGAVDFKLGKYGAYVDIPLSNGLDS
                     KLGFLLINQNNPDLAGNKTIDLAFADRKRHSQIFLRNGDDKVYTNPYFIEEKVELDTS
                     KATPGTKNVTVEASVKAPFNYNESGLVSVTVTNPENAEIVKMEVDTSAIGGGLVPIST
                     ELNRVTIKATSSTAPGTYSLPVKVYDKDNGYYETKLDVTITERVKADGEKDWDEQVIY
                     FMMTDRFYNGDTSNDKLVEGTVTNPRGLYQGGDFKGVTAKLDYLKELGVDSIWLTPIV
                     ENIPQNVGSVKDGEYYAYHGYWASNFEKLNPHLGSLADFHELIDAAAEKGINIVVDVV
                     LNHAGYGTEETFAGMVRTKEEDKQGDDQLGSLSGLPDFKTEEAAVRNQLVAWQASWLE
                     RSTTAKGNSIYAFRVDTVKHVDDTTWQHFKNELVDRDPDFHLIGETWGANYKDTKGDL
                     GIGTMDSLLDFGFKDIAKYLVNGQLKAAGKELEERSKVLTSAASLGQFLGSHDEDGFL
                     YSLGGAEKEGNLDKLKLAASLLITAKGQPVIYYGEEVGQSGQNNWPVYDNRYDFDWSK
                     VETSDITDHYQKLLAFRNANSTLLSRGDTSTLAGNDSQGWLISKRSYQDQAAYLVFST
                     NTESKEMALEVSSKDVVVTDAYTGKSYQAIEKGGKWVVQVELPTIGQGGTMLLQTEAG
                     DIVNASVQGATEEPIEAGYFRVHFKTLPSDNLSSLGLWTWDGVEKPSSDVGAWPTGAT
                     NFSTAKQDDYGYYLDIKMKDETASKISLLINNTSGDNITGDKTIERISTKMNEAWFDE
                     NYQLSLYQPLKEGCIRINYFRTDGNYDQKGLWIWGDVTDLTLGDWPNGIDFENQGKYG
                     AYIDVKLTDLPSSIGFLLLDESKSGDDVKIQQKDYSFKDLKNQTQIFLKDDDATIYTN
                     PYFVNNVRVTGVSHVSLTALEAAFTTLEGADKDSILEKLSVTDKNGQTVAVTDLVLDL
                     TSNKVRVLGDFNQENAGYTLKYGNDSFTTTMSWQLKDELYAYDGELGARVRQAGSVVD
                     MTLWSPSADSVAVVLYDKDDQSKVVGKLAMTKGDKGQWDLELNSQSGLGIADYRGYYY
                     HYEITRGGQSVLVLDPYAKSLAEWNSDLADTDPSYRIAKAAIVDPAEVGPSDLNYATI
                     PNFNQREDAIIYEAHVRDFTSDPAISDELTAQFGTFAAFAERLSYLKDLGVTHIQLLP
                     VMSYYFVNELKNAERMSEYASSNSNYNWGYDPQSYFAFTGMYSTDPTDPMKRIEEFKN
                     LVNEIHKQGMGVILDVVYNHTSKTFLFEDLEPNYYHFMEADGTAKSSFGGGRLGTTHY
                     MSRRVLVDSIKYLVDEFKVDGFRFDMMGDHDAEAIELAFTEAQKLNPNIIMLGEGWRT
                     FTGDANQPVQPADQDWMSSTDTVAVFSDEIRNTLKSGYPNEGQPAFITGGAKSVESVF
                     NNIKAQPGNFLADDPGDVIQYIAAHDNLTLFDIIAQSIKKDPSIAENYTEIHQRQRLG
                     NLLVLTAQGTPFIHSGQEYGRTKQFRHPDYKEPVSEDKVPNKAHLLTNADGTPFDYPY
                     YIHDSYDSSDAVNKFDWTKATDEALYPENTRTQAFTKGLIALRKSTDAFRLGTKEEVE
                     QKVSLISIPGQNGIAKNDVVIAYQTIASNGDRYAVFVNADSKERSFVLSDIYKELLKG
                     HVLVDGKRAGIAALTDLVGVTLTDDAVVLAPLTATVIRLPYITTAVPDTAPTAEEKPS
                     LDFTTKERTEEKILPIVEEIRYDASLSTDQSYVLQEGKTGKKVLVYQDVLIDGKVVAT
                     NLLSETVVDSETRIVVKGSMEAKKEAEKPSLSTTAQASGQATSGASKASLPITGDRQS
                     DLALLGLGLAGLGLTVAAQGRTKKSEE"
     gene            28718..30166
                     /locus_tag="U1404_000126"
     CDS             28718..30166
                     /locus_tag="U1404_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5347121.1"
                     /translation="MDFLQTPLNWFSQNILQNPAFFVGLLVLVGYALLKKKPHDVFAG
                     FIKATVGYMILNVAAGGLVTTFRPILAALNYKFQIDAAVIDPYFGLAAANGKIAEEFP
                     NFVSAATTALLIGFGVNILLVALRKVTKVRTLFITGHIMVQQAATVSLMVLFLIPALR
                     NQFGTAAIGIICGIYWAVSSNMTVEATQRLTGGGGFAIGHQQQFAIWFVDKIAPKLGK
                     KEENLDNLKLPSFLNIFHDTVVASATLMLVFFGVILFILGPEIMANPEVITSGAPYNP
                     AKQAFFMYVIQTAFTFSVYLFILMQGVRMFVAELTNAFQGISSKLLPGSFPAVDVAAS
                     YGFGSSNAVLSGFAFGLIGQLITIVLLIVFKSPILIITGFVPVFFDNAAIAVYADKRG
                     GWKAAAILSFISGVLQVALGAVCVGLLELSGGYHGNIDFEVPWLPFGFAFKYLGIAGY
                     VLVCLFLLAIPQLQFAKAKDKEAYYRGEAQAE"
     gene            30225..30503
                     /locus_tag="U1404_000127"
     CDS             30225..30503
                     /locus_tag="U1404_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000241478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5347122.1"
                     /translation="MVKVLTACGNGMGSSMVIKMKVENALRQLGVTDFQSASCSVGEA
                     KGLAAGYDIVVASNHLISELEGRTKGHLVGLDNLMDDNEIKTKLQAVL"
     gene            30566..31051
                     /locus_tag="U1404_000128"
     CDS             30566..31051
                     /locus_tag="U1404_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5347123.1"
                     /translation="MNLQKSFTENNSIRLGLTAETWQEAVHKAVEPLIDSGAATEEYY
                     DAIIASTEEYGPYYVLMPGMAMPHAQAGVGVLKDSFALITLTKPVVFSDGKEVSVLLT
                     LAATDPKIHTSVAIPQIIALFELENSIERLIACQTPEEVLAMVEESKTSPYLEGLDLE
                     S"
     gene            31062..31724
                     /locus_tag="U1404_000129"
     CDS             31062..31724
                     /locus_tag="U1404_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014622185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HEM5347124.1"
                     /translation="MKHIPNLQVALDHSDLQGAIKAAVSVGHEVDVIEAGTVCLLQVG
                     SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMAAALKA
                     IKEVRGDKGEIQIELYGDWTFEQAQLWLDAGISQAIYHQSRDALLAGETWGEKDLNKV
                     KKLVDMGFRVSVTGGLDVDTLKLFEGVDVFTFIAGRGITEAADPAAAAREFKDEIRRI
                     WG"
     gene            31730..32593
                     /locus_tag="U1404_000130"
     CDS             31730..32593
                     /locus_tag="U1404_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HEM5347125.1"
                     /translation="MARPIGIYEKATPKHFTWKERLEFAKELGFDFVEMSVDESDARL
                     ARLEWTKEERLDLVKAIYETGVRIPTICFSGHRRYPLGSNAPALEAKSLETMKQCIEL
                     AQDLGVRVIQLAGYDVYYEEKSPETRERFIKNLRQACDWAEQAQVMLAIEIMDDPFIN
                     SIEKYLAVEKEIDSPYLFVYPDTGNVSAWHNDIYSEFYLGHRSIAALHLKDTYAVTEN
                     SKGQFRDVPFGQGCVDWDNMFAVLKKTNYQGPFLIEMWSENCETVEETRAAIKEAQDF
                     LYPLIEKAGLN"
     gene            32593..33309
                     /locus_tag="U1404_000131"
     CDS             32593..33309
                     /locus_tag="U1404_000131"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001934215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HEM5347126.1"
                     /translation="MPKDLQEMRQRVYEANIALPAHGLVKFTWGNVSEVCRELGRIVI
                     KPSGVDYEKLSPENMVITDLDGNVVEGDLNPSSDLATHVALYKAWPNVHAVVHTHSTE
                     AVGWAQAGRDIPFYGTTHADYFYGPVPCARSLTAEEVNSAYEKETGAVIIEEFERRGI
                     DPVAVPGIVVRNHGPFTWGKDPAQAVYHSVVLEEVARMNRYTEQINPRVEPAPSYIMD
                     KHYLRKHGPNAYYGQKGDEH"
BASE COUNT         9544 a         6452 c         7948 g         9396 t
ORIGIN      
        1 aaaaataaaa ggagaaccta tatgaagaaa atattgttca gttttgctct gctattgtcc
       61 ctaatagggt taggagcttg tcgtccatcg caaaccacag aaggctctag taagccaaga
      121 gtggctgtga ctacttcctt cctcaatgac atggtctatc agttggcggg tgatgaggtg
      181 gaacgtgatt tgctgattcc agcaggagaa gaccctcatt tgtacgtagc caaatctagt
      241 gatttatcaa aattacaaaa ggctgacctt gttctctatc acggtttgca ctttgaaggt
      301 aaaatggttg aagctttgga gaagaccgga gtagctgttt ctaaaaactt taatgcaaaa
      361 gacttgaata cgatggatga ggatggagaa gagattgtcg atccgcactt ctggttttca
      421 attcccttgt acaagtcagc tgtagctgta gcttcagagg aactacaaaa actcttacct
      481 gctaaagctg agatgattca gaaaaatgca gaaaaatacc aagcgcagct agatgatttg
      541 catgcctggg tagaaaaaga attaagtgtg attccaaaag aaagtcgcta tttggtaaca
      601 ccacatgatg cctttaatta ctttgctgct agttatgact tcactcttta tgctcctcaa
      661 ggcgtgagca ccgactcaga agtggctaac agtgacatga ttgagacagt taacctaatc
      721 atcgaccata atatcaaggc tatctttaca gagtctacaa ccaatccaga acgcatgaag
      781 aaattgcaag aggcagtaaa agccaaaggt ggtcaggttg aagttgttac tggcgaaggt
      841 aaggagttgt tctcagattc cttggcacca gaaggcgagg aaggggatac ctttatcgac
      901 atgtacaaac ataatgttaa actgatggtt aaatatctga aatagtacag atcgaacgga
      961 cttgctattc aatgaagact agagatatta ccgaagatag agttgatagg taccaatatg
     1021 agggacaatc aattgtttcg agcacaagcg gtatagggct ctttctattg gaggtggtaa
     1081 cgcttggggg aggataggcg ttagtagcaa atcacaccag ttattgaggt ccttgactag
     1141 aaataccgct tgtagacctc aatgatcttg gttcacagcg ggactttata tatcagtagt
     1201 ctgtgcgtga atagggattt caaatgagta gtaaaaagga ctcggtctag gtcgagttct
     1261 ttccgttttt ggaccatttt taacagattt ataaacatac gattgaagga agcattggtg
     1321 ctctgcgaaa atcaaattca tgtactgatg tgttgaaata agcgatgtat agggtttgcc
     1381 agcaatttgt tggtacggta tcttaatctt atcgactttc tcagcttggt aggttggtct
     1441 ggttttgatt ttcattgagt atgaatgagg catatcattt ttaaaaatag gaggaaacat
     1501 gtcagcaatc attgaattaa aagatgtcaa tttagcatat acagccagcc agaccatggc
     1561 tttagaagat gtcaatttgg tgattcccag agggagtcgg acggctattg ttggaccaaa
     1621 tggtgctggg aagtccagtc tattcaaggt cattttgggg ttggaaaaac ctgacacagg
     1681 gcaggttcgc ttgcttggtc aggaggcagg tctagagagg ttgattgctc aaaaagtagc
     1741 ctatattccc caatccagtc aagtaaattg gcaatttcct gcaacagtct ttgaaattgt
     1801 tctgatggga cgcttcgctc atagtaaggg aatgtttcga agaccgacta aggctgatag
     1861 acagattgtt gagcaggctc tagaacggtt aaaaattgcg gatttacgcc atcgtcagat
     1921 tgatcagctt tcaggtgggc agcgtcagcg ggtctttcta gcgagagccc tggcacagga
     1981 agcagaattg tatcttatgg atgagcctct agcagggatt gatcaggcaa cagaaatcat
     2041 gatcatggat atgctcaagg agttccaatg tgaagggaaa acttccattg tcattcatca
     2101 tgacttaacg acgctggatg cctactttga tcaccttgtc tggcttcata agcatgtgat
     2161 tgactctggt ccgatggatg agactttgac aagcgagaat tatcaggcga cctacggcat
     2221 aggaaatggg ttgtttctag gaaatgccaa aggaggcagt catgtttgag gttttcaaag
     2281 agtattcttt ctggacagtt gctttaggga ccgtcagcct agctgtagca gccagcacta
     2341 tcggaagtat atctgttctt actaaacaga gtttgcttgg ggatgctctt gggcatgctt
     2401 cttatcctgg agtgattgtc tctttcatga tttttcagtc gcgacatcct ctctacttgc
     2461 tgttaggagc agtgttgtca ggctaccttt cttatgtact tgtccattgg ttgcgtcgaa
     2521 aaggtggtca cagcctagtc aatgcccttt cattggtgtc tgcgtctttc tttggtttgg
     2581 gaatggtctt gaaaaatgct attcagggaa atgaagcctt tgcagggtcc tcccaagctg
     2641 gattgcaaac ctatctattt ggacaggcag cctttattca gctggatgat gtgatactca
     2701 tcggaattat ttctctattg gctttggcat tgtttacttt cttttatcaa gactataagc
     2761 tatatctgtt tgatcaaact tttgcaaggg ttattggtgt tcgtgtaaag tacttgcagc
     2821 agttgacgat gtttttgatg atttgcctaa ttgcagtagg attaaagtta gtcggagcta
     2881 ttttgatgag tagttttttg attgcaccag ctgtctttgg cttgatgctg ggaaaatcgt
     2941 atcataagag tctgttactg gcaggaatcg ttgcaattgg gtcggctttc gtagggacct
     3001 ggattagctc tagtgtatct ggtttatcga ccggaccgac tattatcgtc tgtctgacag
     3061 gtctgaccct gtctgcattt gtgtatgtta cctatgtcag aaaggagaat ggtcgtgttt
     3121 gaagtattgc tcattttgat ggttattgct agttcttgtg gcttgctcgg ctcgatactg
     3181 gttgtaaaaa atcaatcgat gttggcagat gcactatcgc attctgtctt gcttgggatt
     3241 gttctgggat tttttattag tcatagtttg gattcgccat tgctaatagt tggtgccagt
     3301 ctgtttgggt tattatcggt tcttgccatt gaccgtctgc atagtcgaaa gatagcgcat
     3361 gatgccgcaa caggtctagt tttttctttc ttttttgcgg tggcggtttt gcttatttct
     3421 ctttttgctc gcaatgttca cttggatgtg gatctggttt tgcaggggga agtacttttt
     3481 gctccgctcc atcgtatgga tgttctagcc tggtcactcc ctgttagtct ggtcaagtcg
     3541 agtttggctt ggttggttat tgttctattt tttgcttggg cttaccatcg tttacaagtg
     3601 tacctatttg atagcaacca tgctcgtttg tctggcttac gaacaaggat tttagaaatg
     3661 gttattttga ttctagtttc cttaactact gttctggcct tcgaagcgat tggctcgatg
     3721 actgttattg ttttcttggt ggcaccaagt atggctgccc tacgttgggt caaatccttt
     3781 tggcaattgc tgcttttagg gcaaggtatc gctattctaa cggttgtgct aggtttttta
     3841 gtggccaatc aactggattt aaccatgtca gggacctgtg ctgttgtcag ccttcttgtg
     3901 gtttgttcga gtattattct aaaaaatact tggtcacggt catctgataa gtgaaattgt
     3961 cagaattttt tgttattata gtcattaaga aagacaaagg agaaaatcaa tgacacgttt
     4021 acaagatgat ttttacgaat acgtcaatgg tgaatgggca aaaacagctg tgattccaga
     4081 cgataagcca agaacaggtg gtttctcaga cttggcggat gagattgaaa agctcatgat
     4141 tgacacgaca aacgcttggt tggcgggaga agatgtccca gaagatagcg ttttgcaaaa
     4201 ctttgtggct tttcacaaac aagtagccga ctatgaaacc cgtgaccgtt tgggagcaga
     4261 acctgctcag gccttgattg cagagtacaa ggctctcaac tctttcgaag aattcaccag
     4321 caagttggca gaatatgagt tggcaggcaa gccaaacctc atgcctttcg gcgtggcacc
     4381 tgactttatg gacgcgacca ccaatgtcct ctgggcagat tctctaggca ttatcctccc
     4441 agatacgacc tactatgagg aaggtcatga aaagggtgca gaattactca aaatctggcg
     4501 tgagagccaa gaagccctcc tgccaaaatt tggtttcagc gatgaggaaa tcaaggacct
     4561 cttggacaag cgtttggaac tagatgccac gattgccaag tatgttctgt caaatgaaga
     4621 aggttctgag tacgccaaac tttaccaccc gtacgagtgg gcagatttta ctgccttggc
     4681 accagagttg cctttggatg atttcttcac agcgatttta ggtcaaacgc cagacaagat
     4741 tatcgtgcct gaggaacgtt tctggcaggc tgccaaggac atttacagtg cggataattg
     4801 ggagcttttg aaggcgacct tgattttgaa agcggctggc gcctatactg ccttcctgtc
     4861 ggatgaaatt cgcattctag caggagccta cagccgtgct ctttctggta caccgcaggc
     4921 gcaaaaccaa gaaaaagcag cctacaactt ggcacaaggc tactttaacc aagccctcgg
     4981 tctttggtat gcaggagaaa aattctcacc agaagctaag gccgatgtgg aagccaaagt
     5041 tgccaagatg attgaggttt acaaatctcg tttggaaacg gcagactggt tggctcagga
     5101 aacgcgtgac aaggccattg tcaaactcaa tgttatcaag ccttatatcg gctatccaga
     5161 agccttgcca gagcgttatt ataagaagat tgttgaccca agcaagtcct tggtggaaaa
     5221 tgccatcgaa ctaaacaaga ttgacatcgc ccatggttgg agcaagtgga acaagcctgt
     5281 ggacattaag gagtggggca tgccagctca catggtcaac gcctactata acccacagaa
     5341 gaacttgatt gtcttcccag cggcgatttt gcaggctccg ttttactcct tggagcaatc
     5401 ttcgtcagcc aactacggcg gtatcggtgc cgtcattgcc cacgagattt cccatgcctt
     5461 tgactcaaac ggtgcttcct ttgatgagca tggtagcttg aataactggt ggacagagga
     5521 agattatgca gcctttgagg cccgtaccca gcaggttatt gatcagtttg agggtcagga
     5581 ttcttacggt gccaaaatca atggtaagtt gaccgtgtca gaaaacattg ctgaccttgg
     5641 tgggattgca gcggccttgg aagcagccaa gtcagaagat gacttctccg cagaggaatt
     5701 cttcactaac tttgctcgca tctggcgaat gaaggctcgt cctgagttca tgcagatgtt
     5761 ggctagtgtc gatgtccatg caccaggtca cctacgcacc aacatccagt tgccaaactt
     5821 cgatgaattc catgaaacat ttggcgttca agaaggcgac ggcatgtggc gtgcaaaaga
     5881 agaccgtgtg attatttggt aaaaatgcga aaacagctag tgaaaactgg ctgtttttgt
     5941 ctttcccaat tcccccaaaa cgtgatataa tagtaaagat aatttattga catggagaaa
     6001 tgatatgagc ttctacaatc acaaggaaat cgagcccaaa tggcagggat tttgggcaaa
     6061 aaatcatact tttaagacgg gaacagatgc ggctaagcca aacttttatg ccctagatat
     6121 gttcccttat ccgtctggtg cgggcttgca cgttggtcac cctgagggct atacggcgac
     6181 ggacattctc agccgataca agcgtgctca gggctacaac gttcttcacc caatggggtg
     6241 ggatgccttt ggtctgccag ctgagcaata cgctatggat acaggcaatg acccagctga
     6301 ctttacggcg gaaaatattg ctaacttcaa gcgtcagatt aacgcccttg gcttttctta
     6361 tgactgggac cgcgaggtca atacgactga ccctaactac tacaagtgga cccagtggat
     6421 tttcaccaag ttgtatgaaa aaggcctagc ctatgaggca gaagtgcctg ttaactgggt
     6481 agaggaattg ggaacagcta tcgccaacga agaggtcctt cctgacggaa cgtctgaacg
     6541 tggtggctac ccagttgtcc gcaagccaat gcgccaatgg atgttgaaaa tcactgccta
     6601 tgcagagcgt ttgctcaacg acctagaaga agttgattgg ccagagtcta tcaaggatat
     6661 gcaacgcaat tggatcggca agtcaacggg tgccaatgtg actttcaaga ttaaggacac
     6721 agacaaggac ttcacagtct ttacaactcg tcctgacacc ctttttggtg cgacttatgc
     6781 tgttcttgct cctgagcatg acttggtaga tagcattaca tcgcctgagc agacagaagc
     6841 tgtggcagag tacaaacgcc aagcttctct caaatcagac ctagcccgta cagatttggc
     6901 aaaagacaag acaggtgttt ggactggtgc ctacgccatc aaccctgtca acggtaaaga
     6961 aattccaatc tggattgcgg actatgtact ggcaagctac ggaacaggtg ctatcatggc
     7021 cgttcctgcc cacgatgagc gtgactggga atttgccaaa cagtttggtt tggacatcat
     7081 tccagttctg gaaggtggca atgtagaaga agctccttac acagaggacg gtgcccacat
     7141 caattctgat ttcctagatg gtcttaacaa ggaagaagct attgccaaaa tggtagcttg
     7201 gttggaagaa aatggtgttg gtcaagagaa aatttcttac cgcctccgcg actggctctt
     7261 cagccgccag cgttactggg gtgagccaat tccaatcatc cactgggaag acggcacttc
     7321 cacagccgta ccagaaaatg agttacctct ggtattgcca aaaacctcag acatcaagcc
     7381 ttcaggtaca ggggagtcac ctcttgctaa cttgacagac tggttggaag tggtgcggga
     7441 agacggcgtt aaaggtcgcc gtgaaaccaa cactatgcca caatgggcgg gttctagctg
     7501 gtactacctc cgctatatcg acccgcacaa tgatgagaag ttggcagacg aggatcttct
     7561 caaagcttgg ttgccagtgg acatctacat cggtggtgcc gagcacgcag tccttcactt
     7621 gctttatgct cgcttctggc acaagttcct ctatgacctt ggcgttgtgc cgactaaaga
     7681 gcctttccaa aaactattta accagggtat gattttggga actagctacc gtgacagccg
     7741 tggtgccctt gttgcgacag ataaagttga aaaacgtgat ggttctttct tcaacatcga
     7801 aactggtgag gagttggagc aggcacctgc taagatgtcc aagtccctta aaaacgtggt
     7861 caatccagac gatgtggtcg agcagttcgg tgcggatacc ctccgtgttt acgagatgtt
     7921 catgggccca cttgatgcgt caatcgcctg gtcagaagaa ggtctcgagg gcagccgtaa
     7981 gttccttgac cgtgtttatc gcctcttgac gaccaaggag cttgcggcgg aaaatagcgg
     8041 agcgcttgat aaagtttaca atgaaactgt gaagacggtg acagagcata ttgaagacct
     8101 gaaattcaac acggctatcg cccagctcat gatttttgtc aacgcagcca acaaagaaga
     8161 caagctctat gtcgaatacg ccaaaggctt tgtccaattg attgccccat ttgcgccaca
     8221 cttggcagaa gaactctggc aaggtctgac aaatacaggt cagtcaatca gctatgtcgc
     8281 atggccaaca tatgacgaaa gcaagctggt agaaagcgaa gtggaaatcg ttgtccaaat
     8341 caagggcaag gtaaaagccc gcttgaccgt agccaaagac ctagcaccag cagagcttga
     8401 aaaagttgcc cttgcggacg aaaaagtcca agctgaaatt gctgggcaga cagtggtgaa
     8461 ggtgattacg gttccaaaca aacttgtcaa tatcgttacc aagtaacgat tgcctcgttt
     8521 gtttgtctat ttccaacctc caacagtcta tccgcagact gttggagcca actaaacttg
     8581 ttaatattgt tgtgaaataa atgtaaataa taagaagacg acttccgtat tggaggtcgt
     8641 ttttgtattt tctagaatga tcatgttgtc ttaatttccg ttgtgatacg gaaaaagagg
     8701 gtctgtgtat ccgtttacaa tagatgttca ctgaaatata ataagaatat aaaagaagat
     8761 gagggaggga aagcgtgttg aaaactctta aattagtgac aattggtgga ggctcaagtt
     8821 acactccaga attggttgaa ggtatgattc ttcgtgcaca tcaattaccc attcgagaat
     8881 ggtggtttgt tgatgttgaa caaggcgcaa aaaaacagga gatcgtagtt gagttagcac
     8941 ggcgaatggt cgcgaaagca ggcctggact ggaagataga gtcgacctta gacagaagag
     9001 aagcattgat agaggctgat tttgtaacgt ctcagttccg agttggccaa ctacctgcaa
     9061 gatacttaga tgagaccatt cccttgagtt atgggatgct ggggcaagag accaatgggg
     9121 ctggaggaat ctttaaagca tttaggacca ttgaagcata taaagggatt atcaaggata
     9181 tgaaggactt gtgtccgaat gcttggttga ttaattttac gaatcctgct ggtatcgtaa
     9241 cggaagccat tgctaatgaa ctccactgga agaaagttat tggtttgtgt aatatcccta
     9301 ttggtcaaaa gaaacttgct gctcagattt taggccaatc agaaggagac ctaagtacgc
     9361 gccatattgg gttaaatcat tttcactttc atgaagtttg ggataagtat ggggaaaatc
     9421 gtacgcaagt aatcttagaa acattgtatg gggatttgag agaggagacg ccagaagcag
     9481 tcaaaaatat taccaatcta gagtttccta ttcaattgct tcggacgatt ggaatgttgc
     9541 catgtgatta ccatcgttat tattttttgg aacaagaaat gttagaggat gctttggagc
     9601 agtatcgtca gggaaatgta cgagccaagg ttgttcaaga agtagagaca gaattgtttg
     9661 agctttacaa agacccacaa ttgaaagata aaccaaaaca actggaacta cgtgggggtg
     9721 cctactatag tgatgttgcc tgtcaaatca tttgtgctat ccataatgat agtagagaag
     9781 aattgactgt atctactgta aatagaggag ttattcccta tctacctgaa aattgtgtgg
     9841 tagaagtcac ctcgattatc tctgcgcaag gagcaacacc actagcttgt ccaccaactc
     9901 cgccgattgt aaccggctat ttacaactga tgaagcaaat ggagcttgtc actgttcagg
     9961 cagcaatgac aggtgattat tcactggctt tacaagcttt tacactcaac ccgcttattt
    10021 caaacggacc acaagctgaa gtgctattac aagatatgtt acttgcacat gagaattatt
    10081 tgccacaatt cgcaccagct atacagcaca taaaagagag aaggaacaat caatgactaa
    10141 agacaaggta ttttatcaat ttccaacaaa ttttttgtgg ggttcttcta catcaggacc
    10201 tcaaagtgag ggaattgagc caggtgatgg aaaaggacag aacaactggg actattggta
    10261 tagtattgag cctgaacgat ttcataacaa aattggccct agtcaaacat caacatttta
    10321 caaacattat gaaaaagata ttgatttatt agttgaaact gggcacactg tatttcggac
    10381 ctccattcag tggtcacgtt ttataccaac aggtactgga gaaattaatc aagaggcagt
    10441 gtccttctat cgttcggttt tttctttggt aagagcaaag ggaattcaac tctttgtcaa
    10501 tctttatcac tttgatcttc cctattgttt acaagaaaaa ggtggttggg aaaataagga
    10561 aattgttcga gcctatgaag catatgcacg tacatgtttt gaattgtttg atgacttagt
    10621 cgatcgttgg attaccttta atgagccgat tgttccagta gagtgtggtt atctaggaaa
    10681 ttatcattat ccatgtaagg ttgatgcaaa agcggcagtt gcggtggctt atcatacaca
    10741 gttggcaagt tctttagctg taaaggcatg ccatgaggta aatcctcaca aaaaaatcgc
    10801 tattgtcttg aatctaactc ctgcctaccc tcgtagtgag caagcagagg atataaaagc
    10861 agctcgaatt gcagaattgt ttcaaacaaa gagttttcta gatccgtctg tgttaggaga
    10921 atatcccgat gaattagtcg agctgattga tgcatatggg ctaatgccag aggtcagcga
    10981 tgaggaatta gccattatta aggaaaatcg tgtggacttc ctaggggtga attattatca
    11041 accccttcgg gtacaagctc caaccaatag ttggaaagag ggagagcctc ttactccgga
    11101 acatttcttt gccccatatg atatgccagg taaaaaaatg aatccgcata gaggttggga
    11161 gatttatgaa aaagggatat atgatattgc gataaatatt aaggaaaatt accataatat
    11221 cgaatggttt gtaacagaaa atggtatggg agttgaagga gagggcgcat ttaaagacaa
    11281 tggactcatt caagatgatt accggattga atttatcgaa gatcatttaa ttgaattaca
    11341 tcgagctatc caagaagggg cgaattgtaa aggatacatg ttatggacct ttattgattg
    11401 ctggtcttgg ttaaatgcat acaagaatcg ctatggatta gttgaactgg atctagacac
    11461 gcaagaaaga attgttaaga aatcaggcaa gtggttcaag aaattgagcg atgctaatgg
    11521 ttttcatcgc taggagggaa tgatggtaga actgggcttt tcaatttatc ctgaaaacta
    11581 ttcgctagaa gagagtcaag cttacattaa acttctgcac caatacggag caaggcgctt
    11641 atttatgagt ttgttgcaac ttgaaaatgg agaccgaaca gtttttgaat tgtatcaaaa
    11701 actagttgac tatgcaaatc aactagggat gactgtcatt gcagatatca gtccccattt
    11761 tatcgcagcg caaggttggg atggggcatt gatggagcgt gcagctgaac tggggttggc
    11821 tgggattcgt cttgatgaag ctcttccttt ggaagaaatc attgagatga cacataatcc
    11881 acacaacata aaagttgaat tgaatttgag tacagatagg accttgctgt ccaatctttt
    11941 ggctagtgtt gcaaacaggg ataatattat tgcctgccat aatttttatc ctcatgctta
    12001 tacaggttta tcccaagagc acttcttaga gatgtcatct ttttattatc aatccggtat
    12061 aagaactgcg gcatttgtca gtgcacaaac agcttctgag gggccgtggc cattatctga
    12121 aggtctacca actttagaag atcatcgatt ctggcttctt cccttgcaaa ttgcttggat
    12181 gaaggcaacg ggttttattg attctatttt gatttcaaac caatttatct cggaggagga
    12241 actacaatcc attcaaacag ttttaaatga agatacaatc agccttatgg ttgatattga
    12301 ggagggtttg actcccgttg aaagagagat tgtagcgttt gatcatgttt atagaggtga
    12361 tatttctgct tatgttctgc gttcaaccat gccccgtgtg gtgtataagg acgcatctgt
    12421 accggctcgg tcagaccaag caattcctgt gggacgaggg gatatcttaa ttgataatga
    12481 tttatatggt cgctacaagg gtgaattgca aattgcactc aaagaattta ccatcagtcc
    12541 aaaggtaaat aaggtcggac gaatcagccc agactatctt cccttgttac gctttattaa
    12601 accgtggcaa gagtttaaac tggtcatagc ttccgagcac tttcattaat gatgcggaaa
    12661 aagtaggcac ctctagaaat cgctttcatg ttataatgta catataagaa atcaaagact
    12721 gttggcggaa aggagggagc atgttatcta aaaaagaagt acgcttgtta gaggctttac
    12781 ttgcaaaaca ggagacattc gtaccaagca tcgagctagc caaggtatta tcagtgagtg
    12841 atcgaacggt aagaacgtat attcatcaac tgacatcttc tttagaaaat agcggcgctc
    12901 atatcctttc aaaacaaggt agtggttatt gtttacagat tgaacggcca gttgagtttg
    12961 aaatgttttg gcaggagcaa ttgctcctaa aaaagcggtt aactgattta actcaactag
    13021 aagaagcggg tgatcggcaa cggtatattc tgaacaaact cttgttcgag gatccagttc
    13081 agtctcctga atgtttacaa agagagttat tcattggaaa gactacgctt cattccattt
    13141 tggcggatat tcgaaaacta tttatcccct atcaattaga actccttgtg acacgtaaag
    13201 gaattgaact aaagggggat gaacctgcta tccgtcactt tattatggat tacttttttg
    13261 atgagggaaa tgttcaatct gtttatgggg ttgtcgaaac caatctattg ccagatatac
    13321 ggttcacaga cttaatgtta atcgtcttag acgagtgtcg ggatgctaaa ttacgtttat
    13381 cagattttgt catgcagaat ctagtgctcc atatcgctct tcttttacaa cggttgaaaa
    13441 ttggatctgg tctagaccgg ttcccaatac cggagcgtat tcagtcgtct caagagtatc
    13501 ttgtggcaca acggattatt gaacgaatcg aagaaatgtt tcaagtgacg ataccgtcag
    13561 aggaagcaaa ttacattgcg ttgcacctta aggtaaaact aacggggaat ccaaatcaag
    13621 atggtgaggt ggaagagata tttagacaga atgtggagaa tagtctttta catttgtcac
    13681 atttaacagg cctagagttg tcaaaggatc agcagctatt caaaggagtt ctggcccatt
    13741 tgatgccgtt acgtattcgt ttggagaata atattcaact gggaaatccc ctaactgctg
    13801 aaattaaaga ccaatatttt gaggctttcg aattaacaaa aacggcattt gcagcgatac
    13861 cagaactaat ggggtattcg atttcggatg atgagtgggc ttaccttacc ttgcatgtga
    13921 tggcggcaat tgaacgttat cagggattta agaagaccag agtattggta gtctgtgcta
    13981 ccggaattgg aagtgcattg atgttaaaga atcgcttgga gaaagaattt tcatccagct
    14041 tagaaattct tgatacggtt agttattatg aagttacaga ggaacgacta aaagatgttg
    14101 atttgattat ttcatccatt agcttgtcga atctaatttt tatgacaccg gttatcaatg
    14161 tcagcgtctt cctatcagag aaggacattg aggctattcg atctcattta cagcaaacga
    14221 ccccagttat tcctgaccaa ggggaaagtg tgctaatgga agtaggccag gctaagcaaa
    14281 ttgcagaagc agtatttgct ccacatagaa taatctatct tgaggaggat tgtgatcgag
    14341 aagtagcctt gaagcaacta gtaactactt tgaacgaatc cattgagcct gattttgtta
    14401 atcgctttat agaacaagtg aatttacgag aatcttacag tccggttgtc tttggggatt
    14461 ggttagcctt ccctcatcca gccttgccga tgagttattc agaacaaatt gttgtaggga
    14521 tatataagaa tgctgtggat tggggccatg gaaagcaagt tcaattcgtc ttcctattgt
    14581 caccgtcaaa gggtcgaaat gcatttctga agtatatctc accttgtctg gttgattttg
    14641 ttcaagatag agttctccaa gaacgtttgt tacatcatcc aaattataaa gaattaattg
    14701 atatttttat tcccctcatt caaagaaagg ggtaggagga gttttttatg aaacacatta
    14761 tgttagtttg taacgcaggc atgtctacaa gtatgcttgt aactaagatg caaaaagcat
    14821 cagaagaaac aggggttgaa gcaactattt gggctgttcc agtatctgaa gccgataatg
    14881 aagttgctca aaaagagatt gatgtattac tcttaggtcc acaagtaaaa ttcctattga
    14941 acgactataa ggcaaaattt gagccaacta ttaaggtaga tgctatcaat atgatggatt
    15001 acggagtgat gaacggagct aaggtgctag aggctgccct aaaaatgatg gaggggtagt
    15061 atgaattctc cagagtatct tgaagcgatt atggggttaa tcatgtacgg tggtgaagca
    15121 aagggcttcg ctagccaggc gattcaagca gccaaagaag gtcgtattga cgaagcggaa
    15181 cagctgctcc aagacgcaat agcttcattg aatattgccc ataaatcgca aacacaatta
    15241 ttagcaaaag aagcaagtgg agagtctgtt gaattatctt tgttaatggt acatggacaa
    15301 gatcacttga tgaatgcttt gacatttatt gatttagcga aagagttcgt agatctttat
    15361 aaacagattg gataattata ggagaactgg gttatgaaga tatcaaaaat aggtcaagtt
    15421 ccaattgagc gacttttcgc tactattcgc caatccttaa aagatgattt tcagcaaaat
    15481 acgggttcca tcttgcaaga tcaagacatt atccagggac ttacttatac taaaacattt
    15541 ggtgataagg gacaacatag tgtcaaggta actgtagaag agtttacagc tccttattgc
    15601 tatgcagttt gtttccattc taatcgagga aaagagcatg ttcgctatca gttagaggat
    15661 ttagggaatg atcaaaccaa tatagaatat tcttatgaga tggaggctgg tgatattttt
    15721 gtaaaaggca atcaatttct catggaaaaa atcttttcaa aaagtataaa acgtcagaca
    15781 aatgcccagt tagaggcgct gattcgttgc tcagttgagc cggtgtcagt ttaacattta
    15841 ggacatataa aacaaaaaat agaaaaggag acagaatatg tcaaatattt ctgagaaatt
    15901 catggaaata tctgggaaaa ttggttcgca acggcatttg attgcgattc gtgattcctt
    15961 tatttctatg atgcccatta cgatggcagg tacagtagcc gttctattga acgtctttct
    16021 gagagacatc ccaaataata tgggatggac tggttttgct gatgccatgc aaccagtgat
    16081 agatataaat ggctacgttt attttggaac catcgggatt atggcacttg tatttgcctt
    16141 tacctttggt tacaatttat cactcatgta taaggtgaat cctttagcag gtggtttgat
    16201 ttccttcgca tcattcatct ctactattcc tcaaagtgta acgatttcca ctactttaga
    16261 cggagttgat aagtcagttg tttctgcttt ggaaggtttg ggattatcca ttgtgacgac
    16321 agatggagtt tcagccttgg aaacaagcca gtggggagct atcgcattga aatatggcgg
    16381 tgcaacaggt ttgtttacag cattgtttat tggatttctc gctacatggg tctatgcaag
    16441 tcttgtaaaa cggaatgtca ttattaaatt gccagattct gttccaccgg cagttaataa
    16501 ggcctttgct gctattatcc caggtactgc tgcaatttat gcgtcatcca ttgtggcata
    16561 tcttgcattt actctaacag gacaatcttt gggagattta gtatcaactt atattcaact
    16621 gccattactt ggtctgtcac aaggtcttgg gtcagtcatt cttttaactt tccttgtaca
    16681 acttttttgg ttcttcggcc tgcatggtca caatgtcttg gcgccaatta tggacggagt
    16741 ctatatggtt gcactaaatg aaaatgcggc tgcttatact gcaactcata gtactgcgaa
    16801 tttaccgtgg ctttggactc gtggttcctt tgatgcttat gctcaaatgg gtggttcagg
    16861 cgtcactcta gctttgatta ttgctatttt cattttctca aaacgagaag aatacaaaat
    16921 ggtagctaaa ttatctgctc caatgggtgt attcaatatt aacgaaccag ttacctttgg
    16981 tataccaatg gtattgaatc cactgtttgc tattccatgg ctaattgttc caccgatttg
    17041 tgcaactatc gcatacttag cgacagcggc aggtataatt ccgccagtct ttgctcctgt
    17101 tccatggatt acccctccag gactctacgc ttatctagca acaggtggta acattatggc
    17161 tgcgttggtt tcactattca acctctttgt tgccttcctg atttggacac catttgttat
    17221 tgcagccaat aaggttaagg ctggtgagga ataatgtttt ccaagaacaa atctcctttc
    17281 ttattggcgc taggattttt ccttatcgcg attagtccgc tttatgggaa taaatatcta
    17341 aacattatat ctggtttggt ttttattcta atcagtgtac tcaggagtag gagaaaataa
    17401 ttacactaac actaaataga aaacgacttc cgtattggag gtcgtttttt tgacaaaaag
    17461 tccgaacact gtgattgtta agagattgca agttatctgt aatatttgtt acatttcttt
    17521 aagctctctg caaggattat cccttaggat agatagggca gaaaaaacac gaaggaatca
    17581 aatattatga gttatcaaat gataaaaaaa caattcaaat tgggactgtt tacagccctc
    17641 ataggaaatc ttttatggtt gggaatggtg aatgtcagtg cagatgacac agttataagc
    17701 gatagtccga cagtatcagc gttaacaaaa aaggttgaag ctgcaaaaat agcagccaaa
    17761 gctgctgcag aaaaaattgt ggctgagaaa gctgctgccg ctgcaaaggc tgctttggct
    17821 accaatatgg tgtcagaggt tgctgtggaa tatacggcta atacctatcc agctggtcag
    17881 tgtacttggg gtgccaaaga aatggctcct tgggttggaa actattgggg taatggtgga
    17941 gattgggcag ctagtgcggc agcgcttgga tatgaagtgg gaactactcc aaaagttggc
    18001 gctattgctg tatggacaga tggaggctac ggtcatgttg cctatgtaac agatgtggca
    18061 gctaacggtc acattcaagt taaggaatca aactatggtg gagtatacta cccaagtaat
    18121 gtccgaggtt tctttgatcc aacaacgact agcgaaggaa cagtcagcta tatttaccca
    18181 ccagctggag tataattaat atgagatata aagaccgagt aggtcttttt ttatgctccg
    18241 atacttgatt aaaattttta atgtctctga tagaaaaaat atattggctg gaaattgtta
    18301 ttcatgatac tattgtaaaa tctgaaaaag aaagtgtgtt ttaattatga agaaaatagc
    18361 tatgtttaca agtttattgt ttgcgggtat cgtgttagca gcctgcaatt catctgcagg
    18421 tatatcgaat agtacagacc aaaccctctt ggcacaaatt aaggaagaag gcgttattca
    18481 aatcggtact gaaggtgcct atgctcctta ctcttaccac gatgagagcg ggaaattggt
    18541 cggttatgat gtagaagtag ccgaagccgt tgctgagaaa ttgggtgtta aggtggaatt
    18601 tgttgaaaca gaatgggatt ccatgattgc aggtttggat gcggcccgtt ttgataccat
    18661 cgctaaccaa gtcggtatta cagatgagcg taaggcaaaa tacgattttt caacaccata
    18721 tacatacatc tatggagcct tggtaacaca gaaggataat actgacatta caagctttgc
    18781 agatttatct ggtaaaaaat cagccaacag cttgacaagt aactgggcag atttggcgcg
    18841 tgaaaatggt gcagaagttg tcggtgtgga tggattctct caggcagttg aattgttaaa
    18901 tacagggcgt gtggatgcta ccatcaatga caacttggtg tacttggatt atgtgaaaca
    18961 gcatgctgat gcaccgatta aggttgtgac cttgacggat gacgtatcga caacagcctt
    19021 cccagttgca aaaggaaatg aagatcttgc gaaagagatt gatgccgcct tggcagaatt
    19081 ggctagtgaa ggaaaattag ttgaaatttc aaacaaatac tttggtgaag acgtatcaaa
    19141 agctaagtaa tcaggagaaa caatgacaga aagagtatgg caactattgc ttgattcatt
    19201 ttcacagata cttgttccag gattgttggt gactatccca ctgacaatcc tgtcttttac
    19261 ctttggcttg ctaattgcta ttgggacggc cttggtgcaa attgctcaga ttcccattct
    19321 caaacaagtg gctcgtttct atatttgggt tgttcgaggg acaccactct tggttcaact
    19381 ctatgtgata ttctttgggc taccaagtct aggaattgtc ttggatgcct ttccgtcggc
    19441 ggttttggtt ttttctgtca atacaggtgc ctacgctgcg gaaaccattc gggcatctat
    19501 cgagtccgtg cctaaggggc agttggaggc cggctattct gtcgggatga gttttgccca
    19561 gaccatgcgt cggattattc tcccacaggc ctttcgagtg gccttcccgc ccttgtccaa
    19621 caccttgatt ggattggtca aggatacatc gctggctgcc aatattaccg ttttggagat
    19681 gtttatggca actcagcaga ttgcagcaag gacctacgaa ccgtttgccc tctattgtga
    19741 ggtggccctt gtttatctac tcttttcaac cattttgacc aagcttcaag cctatggtga
    19801 gaagaagtta gccgtttact aggaggttca gatgattcaa gcaagtggag taaagctgac
    19861 cttcggtggt cagcaggtgt taaaaggaat tgatgtagag gtcaatccag gtgaggtggt
    19921 cgtcatttta ggcccgtctg gatcgggaaa aacgactctt cttcgttctt taaacttttt
    19981 ggaaaaagct gacgcgggtc acttagtctt tggtgaggac agctatgact tggctcagat
    20041 gaccaagaag gaaattgcag gcattcgcaa gcgcacagcc ttcgtttttc aaaactataa
    20101 tctctttgcc aacaagactg ccttacaaaa tgtgacggaa ggtctgattg tggctcggaa
    20161 agtacccaaa caagaggctg aaagaatcgg taaagcagcc ttggacaagg tgggactatc
    20221 tggtaaatat ggtttctatc caagccagct atcaggaggt cagcagcaac gggtcggcat
    20281 tgccagagcc attgcgacca atccagaggt catctatttt gatgaaccaa cctcggcctt
    20341 ggatcctgag ttaatcggtg aggtcttggc tgtcatgatg cagttggcaa aagaaggtat
    20401 gaccatggtg gttgtgactc atgaaatggg ctttgcgcgt gcggtagctg atcgagtcat
    20461 atttatggat ggtggtcgga ttatcgaaga aggtcgacca gaagacattt ttgaccgtcc
    20521 acaagaagaa cgtactaagc aattcttagc tcgcattcaa aaggtagatg ttgagtaagc
    20581 taagcaaatt aatttatctt atttatttcc ataatcgtac agaaaatgga cagaatttga
    20641 caaagatact tcaattgtta gacattgatt ggtctagcgg ttggagtatt ttttgtttag
    20701 agggaatgga tattcttata tagtactttt agcacgaggc gatgagccgc aggcatagat
    20761 gaagttaggc aaggaagcta aggaagtaat agaaggaaaa ctaaatgacg ataaatgtat
    20821 tcgaaaggtc tttacttttt agtaataaat agtatataat aacctaaaga aaacgtttgc
    20881 acaattttga ctgtttgctt gctaaaagat aagcaacaga aatagaatta gggaggagtt
    20941 ctatgacgac attagccgat gtggctaggt tagccaatgt atcaaagatg actgtttcgc
    21001 gtgtcatcaa ccatccagaa caagttacac aagagctgcg gacgctcgta acagctgcga
    21061 tggaagaatt aaactataag ccaaatgtgg cggccaaggc cttggcccag caacggacac
    21121 tggttgttca ggctgtcatt ctcgaaaaga tggatgtggt agagccgtac tatatcgacc
    21181 ttcttgcagg aatcgctgat gagctcaatc atcgaaatta taccttgcag ttggtgacca
    21241 atccaagtca gattactgat caatgtgatg gttacattgt gactggtgct cgcaagaatg
    21301 actacccttg gttgaaaggg ctgcggaagc cattgatttt attcggggag aatcaagaag
    21361 gccttccttt tgtagattca gacaatcgtt tggcgactag gtccgcaacc cagtttgctt
    21421 tatcaaaagg ttatgagagg attgtttttg taggaattga cttgccagaa gcctttgaaa
    21481 aagggagaga agaaggctac aaagatgcga tgcagggccg agaaactcat ctctatcgat
    21541 tggaaaatcg ttctcgtgtt gcggaagaat ttgtgaaaaa tcttgattat ttaccagaaa
    21601 acacctgttt tatctgcgca tcggatcgtc tcgctcttgg ggttacaaga ggtttacaag
    21661 ctctaggaaa gtctattccg aatgacgttg gggtgattgg ttttgacggc ttctttttag
    21721 atcggatgtc cagaccagcc ttgacaacga tgaagcagcc gattcgtcaa atgggggctc
    21781 ttagcgtcaa acatttaatg acgatattgg atggcaagcc tctggctaga caggggcatt
    21841 actgccaggc aaccttaatt gaaagggaga ctacacctca gtagtctctt ttttggtcag
    21901 tgggcggtct aggagcaaaa gaagggggag ctatttattc tatttttgtt agatagtggc
    21961 ccaaaacttg ttaccgctaa cacttaagaa aacgtttgca aagaatcctt ggaattgtat
    22021 atactggtag tgtacaattc aaacttattt atatggagga gtctatgaaa aagaaatccg
    22081 ttcagaatat gaaacgaaca gggatgctag agaagaaaca gatttttggc attcgtaaac
    22141 taaatgtagg tgtagcctct gttgggattg cggctgctct gtttttaagt ggagcaggtc
    22201 aactagtgca ggcagaggaa gttgtcctcc ctgcgtcaac tagttcaacg actctttcgg
    22261 aacaggatgg cggcgcggta gaagcgacca caactgcgat agaagctaca gattctatgg
    22321 tagctgaagc gacagcggta acagaaacag ccgatgcaac tgctccagag gaagctccta
    22381 tcgaagaagg cagcattcgt ctgcactttg aaaatgtaga tgaaacagca ccagaaagtc
    22441 aaggactttg gacttgggga ggagtggcag agccgtccga tagtaatcaa tggccaacgg
    22501 atacagcgaa tttttcaagc agtcaggtag atgactacgg ccattacgtt gatattaaaa
    22561 aatctgagac accaggaacg attggttatc tggttctcaa gaatggggaa aaaataacag
    22621 aatcggacca aaaagtggag cttcttgttc cggaacaaaa tgaggcttgg atctctagtg
    22681 attatagcgt gtctagctat gagccgctca aagatgaaaa tgtcctccgt atcaactaca
    22741 cccgtgaaga caataattat gaaggttggg gcgtttggac ttggggcgat acgactgaag
    22801 cgagtgatgg ctggccaaca ggtgccgttg actttaaact tggtaaatat ggcgcttatg
    22861 ttgacattcc cctctcgaat ggtttagatt ccaagcttgg atttctgcta atcaatcaga
    22921 ataatccaga tttggcaggc aataaaacca ttgatttagc ctttgcagac cgtaaacggc
    22981 atagccaaat tttccttcga aacggtgacg acaaagttta cacaaatcca tactttatcg
    23041 aagaaaaagt agaattagat acaagcaaag ctactccggg tacaaaaaat gtgactgttg
    23101 aggcaagtgt gaaagcacca ttcaactaca atgaaagcgg cttggtatct gtaactgtca
    23161 ccaaccctga aaatgctgaa atagtcaaaa tggaagttga tacaagtgcc atcggcggag
    23221 gtcttgtgcc aatctctact gagctcaatc gtgtgaccat taaagcgacg tctagcacag
    23281 cgccaggtac atatagtctt cctgtaaaag tctatgataa agacaatggt tactacgaaa
    23341 caaaattgga tgtgaccatt acagagcgtg tcaaggcaga tggtgaaaaa gactgggacg
    23401 agcaagtcat ctacttcatg atgacagacc gtttctataa tggagacacc agcaatgata
    23461 agctggtaga aggaacggtc accaacccac gcggtcttta ccagggcggt gacttcaaag
    23521 gagtgacagc caagctggac tatctgaaag aattgggtgt ggattctatc tggttgactc
    23581 cgattgtgga aaatattcca cagaatgttg gtagcgtaaa agatggagag tactatgctt
    23641 accatggtta ttgggcatcc aattttgaga aactaaatcc gcatttggga agtttagccg
    23701 atttccacga attgattgat gctgcggcgg aaaaaggtat aaatattgtt gttgacgtgg
    23761 tgctgaacca tgctggctat ggtacagaag aaacctttgc aggtatggta cggactaagg
    23821 aagaagacaa gcagggagat gaccaattag gctcattatc tggattaccg gacttcaaga
    23881 cagaagaagc tgctgttcgc aatcagttgg ttgcttggca ggcatcttgg ctggaacgct
    23941 caacaactgc caagggcaac tctatctatg ctttccgtgt cgatacagtc aaacacgttg
    24001 atgataccac atggcaacat ttcaaaaatg aattggtaga tagagatcct gacttccact
    24061 taattggaga aacatgggga gctaactata aagataccaa gggtgacttg ggaatcggta
    24121 ctatggacag cttgttggac tttggcttca aggatatcgc taagtacttg gtcaatggtc
    24181 aactgaaagc agctggaaaa gagctagaag agcgtagcaa ggttttgact agcgcagctt
    24241 ctctgggtca attcttgggc agtcacgacg aagatggttt cctctacagt ctcggtggcg
    24301 cagaaaaaga aggaaatctg gacaaactga aattggctgc tagtcttttg attacagcta
    24361 aaggtcagcc agtcatttac tacggtgaag aagtggggca atctgggcaa aacaactggc
    24421 cagtttatga caaccggtac gatttcgatt ggagcaaggt agagactagc gacatcacag
    24481 accactatca gaaattattg gctttccgca atgccaattc aacattgctc tcacgtggtg
    24541 atacaagcac ccttgctgga aatgatagcc aaggttggct tatcagcaaa cgcagttacc
    24601 aagatcaagc agcctatctt gtcttctcaa ccaataccga gagcaaggaa atggcgcttg
    24661 aagtatctag taaagatgta gttgtcacag atgcctacac aggaaaatct tatcaagcta
    24721 tcgagaaagg tggtaaatgg gttgttcaag tcgaacttcc aacaatcggt caaggtggca
    24781 ccatgctcct tcagacagaa gcaggtgaca tcgtcaatgc aagtgtgcaa ggagcaactg
    24841 aagaaccaat tgaagcaggt tacttccgtg ttcactttaa aactctacca tctgataatt
    24901 tatctagcct aggtttatgg acatgggatg gtgtcgaaaa accatcgtca gatgttggtg
    24961 cttggccaac aggtgcaacc aatttcagta ctgctaagca ggatgattat ggctattatc
    25021 tggacatcaa gatgaaagat gaaacagcca gcaagattag tctgttgatt aataacactt
    25081 ctggtgataa catcacaggt gacaagacca ttgaacggat tagcaccaag atgaatgaag
    25141 cttggtttga tgaaaactac caactcagcc tctatcaacc tctaaaagaa ggctgcatcc
    25201 gtatcaatta cttccgtacc gatggcaatt atgaccaaaa aggtctctgg atttggggtg
    25261 atgtgactga ccttaccttg ggtgactggc caaatggtat tgattttgaa aaccaaggca
    25321 agtacggtgc ctatatcgat gtcaaattga cagatttacc aagttccatt ggcttcttgc
    25381 tattggatga aagcaagtca ggagatgatg tgaagattca gcagaaagat tatagcttta
    25441 aagatttgaa aaatcagaca caaatcttcc tcaaggatga tgatgcgact atttacacca
    25501 acccttattt tgtcaataat gtccgtgtga caggtgtttc tcacgttagc ctaacagcct
    25561 tagaagcagc ctttacaaca ttggaaggtg cggataagga tagcatcttg gagaaattgt
    25621 ctgtaacaga taagaatggt cagacagttg ctgtgacgga tcttgtcttg gaccttacca
    25681 gcaacaaggt gcgagtcctc ggggatttca accaagaaaa tgcgggctat accctcaaat
    25741 atggcaatga tagcttcaca acaactatga gctggcagtt gaaggatgag ctctatgctt
    25801 atgatggaga gcttggtgcg cgtgtgcgtc aggctggtag tgtcgttgat atgaccctat
    25861 ggtctccaag tgcagacagt gtggcagtcg ttctttatga taaggatgac caatctaagg
    25921 tggtcggtaa attggccatg accaaggggg ataagggaca atgggacctc gaattgaaca
    25981 gtcaatcagg tcttggtatc gcggactatc gtggttacta ctaccattat gaaatcactc
    26041 gcgggggtca atctgttctt gttttagacc catatgctaa atctttagcg gagtggaata
    26101 gtgatttggc agatacagat ccatcttatc ggattgcaaa agctgcgatt gtggacccag
    26161 cagaagttgg tccaagtgat ttgaactatg ccacaattcc taacttcaat cagcgtgaag
    26221 atgctattat ctatgaggct cacgtccgtg acttcacatc cgatcctgct atttctgatg
    26281 aattgacagc tcagttcggt acctttgcgg cctttgcaga gcgtctcagc tacctcaaag
    26341 acttgggtgt gacccatatt cagttgctac cagttatgag ctactatttt gtcaatgaat
    26401 tgaaaaatgc agagcggatg agtgagtatg cttctagcaa cagcaactac aactggggct
    26461 atgatccaca gagctacttt gcctttacag gtatgtattc tacagatccg accgatccaa
    26521 tgaaacgcat cgaggaattc aaaaacctgg tcaatgaaat ccacaaacaa ggcatgggtg
    26581 tgattttgga tgtggtctat aaccacactt ctaagacctt cttatttgaa gacttagagc
    26641 caaactatta tcacttcatg gaggcagatg gtacggctaa atcaagcttt ggtggtggtc
    26701 gtctcggaac aactcattat atgagtcgcc gtgtcctcgt tgattctatc aagtatcttg
    26761 tggacgagtt taaagtagat ggtttccgct ttgatatgat gggtgaccat gatgccgaag
    26821 caattgagct ggcctttacc gaggcacaaa aactcaatcc aaacatcatt atgcttggtg
    26881 aaggatggag aacctttaca ggtgatgcca atcagcctgt tcagccagcg gaccaagact
    26941 ggatgagttc aacagatacg gttgcggtat tctcagatga aattcgcaat acacttaaat
    27001 ctggttatcc aaacgaaggt cagccagcct ttatcacagg cggtgctaag agtgtagaat
    27061 ctgtcttcaa taacatcaag gcacaaccag gcaacttctt ggcagatgat ccaggtgatg
    27121 tgatccagta tattgctgcg catgataact tgaccctctt tgatattatc gctcagtcca
    27181 tcaagaagga tccatcaatt gctgaaaatt acactgaaat tcaccaacgt caacgtttgg
    27241 gtaatttgct agtcttgact gctcaaggga caccgtttat tcattctggt caggagtatg
    27301 gacggaccaa acagttccgc catcctgatt acaaggaacc tgtttcagag gacaaggtac
    27361 cgaacaaagc tcatttgttg acaaatgcag atggtacgcc atttgactat ccatactaca
    27421 ttcatgattc ttacgattca tcggatgcgg tcaacaagtt tgactggacc aaagcgacag
    27481 atgaggcgct ctatccagag aatacccgta ctcaggcctt tacaaaagga ttgattgcct
    27541 tgcgcaaatc tacagatgcc ttccgtttgg gaacaaaaga agaagttgaa cagaaggtta
    27601 gcttgatttc aattccaggt caaaatggca ttgccaaaaa tgatgtggtc attgcctatc
    27661 aaaccattgc aagcaatggg gaccgctatg ctgtctttgt taacgccgac agtaaggagc
    27721 gcagctttgt tctttctgat atttacaaag aattgcttaa gggtcacgtg ctggtcgatg
    27781 gtaagcgggc tggaatagca gcgctgactg atttggtagg tgtgacattg acagatgatg
    27841 cagttgtgct tgcaccgttg actgcaacgg tgattcgctt gccttacatc actacggcag
    27901 ttccagatac agcgcctact gctgaagaaa aaccaagtct agactttact accaaggaac
    27961 gtacagagga aaaaattctt cctatcgtag aggaaattcg ctatgatgca agtctctcta
    28021 ccgatcaatc ttatgtcctt caagaaggca aaactggtaa gaaagttctg gtttatcagg
    28081 atgtcttgat tgatggtaag gtagttgcta ctaatttgtt atcagaaaca gttgttgata
    28141 gcgaaacacg tattgttgtg aaaggcagta tggaggctaa gaaagaggct gaaaaaccga
    28201 gtctttctac tactgctcaa gcatctggac aagcgacaag tggtgcaagc aaggcgagtc
    28261 tgccgattac gggtgaccga caaagcgatt tggcacttct aggtctcgga cttgctggac
    28321 ttggtttgac agttgctgcg caaggaagaa ctaaaaaatc agaagagtaa taatatttgg
    28381 ctctccagag gagcattgct caaaatcttg tgaatgtctt ataaatacaa gagttgagag
    28441 tatcacttcc ctctagaaga ggttggtttc aaaccaacct cttcttttat gttttttgag
    28501 gttcttttaa atttttaggg gaaataacgt ctatttattg attattagaa taaatgggct
    28561 ggtgaactat agggaggaat tctgattaaa tcagccatta aagttcggaa atagtccaat
    28621 agtgaacaca agcctgtgct ttatttggtc tttttgtttc cgcttacata acttataata
    28681 aaaccataaa aatcatttca aaaaaggaga atgaaaaatg gatttccttc aaaccccatt
    28741 aaactggttc tcacagaata tcctgcagaa tccagccttc ttcgtaggtc ttttagtatt
    28801 ggtgggctat gccctcttaa agaaaaagcc tcatgatgtt tttgcagggt ttatcaaagc
    28861 gacagtcggc tatatgattt tgaacgtagc ggctggtggt ttggtaacaa ccttccgtcc
    28921 gattttggcg gccttgaact ataagttcca aattgatgcg gcagttattg acccttactt
    28981 tggtcttgca gcagcaaatg ggaaaattgc tgaggagttc cctaatttcg tatcagcagc
    29041 tactacagca ctcttgattg gtttcggtgt caacatcctc ttggtggcac tacgtaaggt
    29101 taccaaagta cgtactctgt tcatcactgg acacatcatg gtacaacaag cggcaacagt
    29161 ctcattgatg gtgctcttcc tcatcccggc tcttcgtaac caattcggta cagcagcgat
    29221 cggtatcatc tgtggtatct actgggcagt cagctcaaat atgacagttg aagcaacgca
    29281 aagattgaca ggtggcggtg gatttgccat cggtcaccaa caacaattcg caatctggtt
    29341 tgtcgataag attgcaccaa aacttggtaa aaaagaagaa aacttggata acttgaagct
    29401 acctagcttc ctcaacatct tccacgatac agtcgttgct tcagcgacat tgatgcttgt
    29461 gttcttcggt gtgattttgt tcatcttggg tccagaaatc atggcaaatc cagaagttat
    29521 cacttcaggt gctccataca acccagctaa acaagccttc tttatgtatg tgattcaaac
    29581 agccttcacc ttctcagtat atcttttcat tttgatgcaa ggtgtccgca tgttcgtagc
    29641 agaattgaca aatgccttcc aaggtatctc aagcaaattg cttcctggtt cattcccagc
    29701 ggtggacgtt gcagcttctt acggcttcgg ttcatctaac gcagttcttt caggttttgc
    29761 cttcggttta atcggtcagt tgattacaat cgtcctcttg attgtcttca agagtccaat
    29821 cctcatcatc actggtttcg tacctgtatt cttcgataac gcagctatcg cagtgtacgc
    29881 tgacaaacgt ggtggttgga aagcggcagc catcctttcc ttcatctcag gtgtccttca
    29941 agttgctctt ggtgcagtct gcgttggctt gcttgaattg agcggtggtt accacggaaa
    30001 cattgacttt gaagtgccat ggttaccatt tggatttgca tttaagtacc taggtattgc
    30061 tggttatgtt cttgtctgcc tcttcttatt ggctattccg caacttcaat ttgcgaaagc
    30121 aaaagataag gaagcatact atcgtggtga ggcacaagca gaatagtatc cttggtctgt
    30181 aaaatcagag cataatgtat taaaaataaa ataggagtga aattatggtt aaagttttaa
    30241 cagcctgcgg aaatggcatg ggctcatcta tggtcatcaa gatgaaggta gaaaacgccc
    30301 ttcgtcaact cggcgtaaca gattttcaat cagcttcttg ctcagtcggt gaagcaaaag
    30361 gtttagcggc aggatatgat attgtcgtag cctctaacca cttgatttct gagttggaag
    30421 gtcgcacgaa aggtcatttg gttggtcttg acaacctcat ggacgacaac gaaatcaaaa
    30481 caaaattaca agcagtgcta taaatagccg ttaggggtag ggagtttccc tccccctttc
    30541 atatagcgtg tagaagggaa aaactatgaa tttacaaaaa tcatttacag aaaataattc
    30601 cattcgcttg ggattgacag cggaaacctg gcaggaggct gttcacaagg ctgttgagcc
    30661 cttgattgac agcggtgctg cgacagaaga atactacgac gcgatcatcg catcaactga
    30721 agaatatgga ccttactatg tgctcatgcc tggtatggct atgcctcacg cccaagcagg
    30781 tgtcggcgtc ttgaaggatt cctttgcttt gattaccttg acaaaaccag tcgtcttctc
    30841 agatgggaaa gaagtgtctg ttctgctcac tcttgcagct accgatccaa agattcatac
    30901 atccgtagct attccacaaa tcattgccct ctttgaattg gaaaattcga ttgagcgttt
    30961 gattgcttgt caaactcctg aggaagtctt ggcaatggtg gaagagtcca aaaccagtcc
    31021 ttacctagaa ggtttagatt tagaaagtta ggagaaaaaa catgaaacat attccaaatt
    31081 tacaagtcgc ccttgaccat tcagacttgc agggagcgat taaagcagct gtctccgttg
    31141 gtcatgaagt ggatgttatc gaggcaggta ccgtttgttt gcttcaagtt ggtagcgaat
    31201 tggtagaagt tcttcgtagc ctcttcccag acaaaattat cgttgcagat accaagtgtg
    31261 cggatgcggg tggtactgtg gctaaaaaca atgctgttcg tggtgcggac tggatgactt
    31321 gtatttgttc agcaactatt ccaactatgg cagctgcttt gaaggctatc aaggaagtgc
    31381 gtggcgacaa gggtgaaatc caaatcgaac tttacggtga ttggacgttt gaacaagctc
    31441 agctttggtt ggacgcaggt atttcccaag cgatttacca ccaatcgcgt gacgccctcc
    31501 ttgctggcga aacctggggt gaaaaagacc tcaataaagt gaaaaaattg gttgacatgg
    31561 gcttccgtgt ttctgtaaca ggtggtcttg atgtggatac cctcaaactc tttgagggtg
    31621 tagatgtctt cacctttatc gcaggtcgcg gtatcacaga agcagcagat ccagcagctg
    31681 cggcgcgtga atttaaagac gaaatccgtc gtatctgggg gtaaggccta tggcacgacc
    31741 aatcggaata tatgaaaagg caacgcccaa gcatttcaca tggaaggaac gcttggagtt
    31801 tgccaaagaa ttaggtttcg actttgtgga aatgtcggtg gatgagagcg acgctcgttt
    31861 ggctcgtttg gagtggacca aggaagagcg tttagacttg gtcaaggcca tctatgaaac
    31921 aggtgtccgc attccgacca tttgtttctc aggtcaccgt cgctacccgc ttggctccaa
    31981 tgcccctgca cttgaagcca agtccttaga aaccatgaaa cagtgtatcg aactggctca
    32041 ggatttgggc gttcgagtca tccagttggc tggctatgat gtttactacg aggaaaaatc
    32101 acctgaaacc agagagcgtt tcatcaagaa tctccgtcag gcttgcgact gggcagaaca
    32161 ggctcaggtc atgttggcca ttgaaattat ggatgatcca tttatcaact ccattgaaaa
    32221 atacctagct gttgaaaaag aaatcgactc gccttatctc tttgtctatc cagatacggg
    32281 aaacgtgtct gcttggcata atgacattta tagcgaattt tatctgggac accgttctat
    32341 cgcagccctt cacctcaagg atacctatgc ggtaactgaa aattccaaag gtcaattccg
    32401 tgatgtccca ttcggtcagg gctgtgtgga ctgggacaat atgtttgcag tattgaaaaa
    32461 gaccaactac caaggtccat tcttgattga aatgtggtca gagaattgtg aaacggttga
    32521 ggaaacacga gcagctatca aggaggcaca agatttcctc tatccattga ttgagaaagc
    32581 ggggttgaac taatgccaaa agatttacag gaaatgcgtc aacgggtcta tgaagccaat
    32641 atcgccctgc ctgctcatgg gctcgtcaag tttacctggg gcaacgtatc agaagtctgc
    32701 cgtgaacttg gtcgcatcgt catcaagccg tctggtgtgg actatgagaa attgtcacca
    32761 gaaaatatgg tcattacgga cttggacgga aatgtggtag aaggtgacct caatccttcg
    32821 tctgatttgg cgacccacgt tgccctctac aaggcttggc caaatgtcca tgccgttgtg
    32881 catacacatt cgacagaagc agtgggttgg gctcaggcag gtcgtgacat tccattttat
    32941 gggacgaccc atgcggacta tttctatggt ccggtaccat gtgctcgttc tttgacggct
    33001 gaggaagtga actcggccta tgaaaaagaa acaggagcag tcatcatcga ggaatttgaa
    33061 cgccgaggta ttgatccagt ggccgttccg ggtattgttg tccgtaacca cggaccattt
    33121 acctggggca aggatcccgc tcaggcagtt taccatagcg ttgtccttga ggaagtggct
    33181 cggatgaacc gctataccga acaaatcaat ccacgggtgg agccagcgcc aagctatatc
    33241 atggacaagc actacctccg taaacatggt cccaatgcct actatggaca aaagggtgat
    33301 gaacattaag ttcttgtgtg aaaaaaacag cagggaaaag
//
LOCUS       DASGCC010000005        30883 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.005, whole genome shotgun sequence.
ACCESSION   DASGCC010000005 DASGCC010000000
VERSION     DASGCC010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 30883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30883
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.005"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            231..701
                     /gene="rimP"
                     /locus_tag="U1404_000132"
     CDS             231..701
                     /gene="rimP"
                     /locus_tag="U1404_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEM5347127.1"
                     /translation="MSSIIELVTAAITPAIQTPYELVDVEYGKMGGDYVLSIFVDKEG
                     GISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIH
                     VKLYQAIDKIKVFEGTLLSFDGTDLIMEYMDKTRKKEVTIPYQTVAKARLAVKL"
     gene            774..1916
                     /gene="nusA"
                     /locus_tag="U1404_000133"
     CDS             774..1916
                     /gene="nusA"
                     /locus_tag="U1404_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEM5347128.1"
                     /translation="MSKEMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSES
                     AVIEFDEKKGDFHVFTVREVVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEF
                     GRVAAQSAKQTIMEKMRKQKRAITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQ
                     LSKQDQIPGEVFQSHDRIEVYVYKVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDG
                     TVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGSNIKKITSKFHPARYDAKNDR
                     MIPTEENIDVIEWVADEAEFIYNALAPAEVDQVLFDTEDGKHATVVVPDDKLSLAIGR
                     RGQNVRLAAHLTGFRIDIKSASEYEAFEATQYATDEVVEEVAEEQE"
     gene            1933..2229
                     /locus_tag="U1404_000134"
     CDS             1933..2229
                     /locus_tag="U1404_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEM5347129.1"
                     /translation="MAKARKIPLRKSVVSGEIIDKRDLLRIVKNKEGQVFIDPTGKAN
                     GRGAYIKLDNDEASQAKKRRVFDRSFSMEVAEEFYDELIAYVDHKIKRRELGLE"
     gene            2186..2524
                     /locus_tag="U1404_000135"
     CDS             2186..2524
                     /locus_tag="U1404_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ-related RNA-binding protein"
                     /protein_id="HEM5347130.1"
                     /translation="MLIIRSRGENLDSNKRQKILNLLGLAQRAGRLVSGEDLVVEAIQ
                     KGQAKLVFLAEDAAGNLSKKVTDKSHTYQVEVVTVFSTLELSAAVGKARKVLAVTDAG
                     FTKKMRSIME"
     gene            2542..5364
                     /gene="infB"
                     /locus_tag="U1404_000136"
     CDS             2542..5364
                     /gene="infB"
                     /locus_tag="U1404_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEM5347131.1"
                     /translation="MSKKRLNEIARELGVSSKEVVAKAQELGFEVKSHASSVDEASAK
                     RLAESFGGQKSEATKVAAKVSKPEKVDETPKVETAKVEKAKETQPVVKEEVAASAVQS
                     VPHRPQSRNFKAEREARAKEQAAKRAQGQGKGGQAKSGQDRRDNRQQGQGRSNNERND
                     RRDNRRDQRPEERKDNRFGERRDNRANRRQDNRSGRSARFEQREAAKPAGPKIDFKAR
                     AAALKAEQNAEYARTSEERFRQAQEAKKQPKKPKEIKFEEPVVESKPFVKPAPVASVP
                     EQVAETTVDTRRKKQARPDKKRYFNSDEEDGPRKQQRNRNSQNQVRNQRTSNWNNNKK
                     NKKGKANQPAKPVTERKFHELPTEFEYTAGMTVAEIAKRIKREPAEIVKKLFLMGVMA
                     TQNQSLDGDTIELLMVDYGIEAKEKVEVDNADIERFFVEEGYLNEEEMTERPPVVTIM
                     GHVDHGKTTLLDTLRNSRVATGEAGGITQHIGAYQIEEAGKKITFLDTPGHAAFTSMR
                     ARGASVTDLTILVVAADDGVMPQTIEAINHSKAANVPIIVAINKIDKPGANPERVIGE
                     LAEHGVISTAWGGESEFVEISAKFNQNIDELLETVLLVAEIQELKADPTVRAIGTVIE
                     AHLDKGKGAVATLLVQQGTLNVQDPIVVGNTFGRVRAMTNDLGRRVKTAGPSTPISIT
                     GLNEAPMAGDHFAVYEDEKSARAAGEERAKRALLKQRQATQRVSLENLFDTLKAGEVK
                     SVNVIIKADVQGSVEALASSLQKIEVEGVRVNIVHSAVGAINESDITLAEASNALVIG
                     FNVRPTAEARSQAEADDVEVRLHSIIYKVIEEMEDAMKGMLDPEYEEKIIGEAIIRET
                     FKVSKVGTIGGFMVVRGKVTRDSSVRVIRDGVVVFDGKLVSLKRYKDDVKEVGNAQEG
                     GLMIENYNDLKVDDTIEAYIMEEIKK"
     gene            5520..5873
                     /gene="rbfA"
                     /locus_tag="U1404_000137"
     CDS             5520..5873
                     /gene="rbfA"
                     /locus_tag="U1404_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEM5347132.1"
                     /translation="MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMVGD
                     LSMAKVYYTIMSNLASDNQKAQTGLEKATGTIKRELGRKLTLYKIPDLVFEKDQSIEY
                     GNKIDQMLRALDQKD"
     gene            6155..6826
                     /locus_tag="U1404_000138"
     CDS             6155..6826
                     /locus_tag="U1404_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin lysis protein"
                     /protein_id="HEM5347133.1"
                     /translation="MKTFISKLMLVSTVVLLAACQSNQVKGGESSSSSASSQVSDGSS
                     LQQASTIASSSETQASSVTTPELSEVYQSVIDRYQANMGQSAEAINQDEVSSYLSLLT
                     SQGQEYSGIFYSLYDVNHDGTEELLLALDKSGEYVLIDLYTQLADESLRLVDNFRNLG
                     FEIGPNALLRPLQDGTYLFEGDGIFRIYQYNAMIPGLKRISESDTNPETSPLLELKSL
                     HWVKL"
     gene            6991..8145
                     /locus_tag="U1404_000139"
     CDS             6991..8145
                     /locus_tag="U1404_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding domain-containing protein"
                     /protein_id="HEM5347134.1"
                     /translation="MKTNLKKLLYSGVTLMSLVVLAACSSTSSSTTTSSSAATSQTSV
                     ATISNNSTSSDSSSSTIDWSALPTTEVTLSNDGLKITEGGTYILTGSTTAGVTVETDA
                     NVRIILAGAEISSSDTAAINVINADNVELEIKDGTTNTVKDTSNHTDTNIEGAIHVEA
                     DLTITGNGSLTVEGNFQDGIVSTDDLIVNSGNITVTAVDDGIRGKDSLTINGGTINVI
                     AGGDGIKSTNDTDTTKGYTTITGGEITVKAGDDGIKAETALTIDGGTITVSESAEALE
                     GTNITINGGTLDVYGSDDAINAASTTSSEIFIKVTGGDLKVAVGSGDTDAFDANGDIY
                     ISGGTIDVTAQSAFDFDGTAELTGGTVTVNGEQITQITATGPGAGGHGGW"
     gene            complement(8181..8840)
                     /locus_tag="U1404_000140"
     CDS             complement(8181..8840)
                     /locus_tag="U1404_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEM5347135.1"
                     /translation="MEFDLFLMICNYIGTIAFAVSGTVKGFKKKLDIFGISLLGIITA
                     VGGGIIRDTMANRIPAALTDPTAIYLSLGVAISMYLIVINLKQDKPLDKKMIHFLSQT
                     NLIFDAIGLAIFALIGASTGISLQLNALTSGILAALTGVGGGIARDLLVNETPIVLKE
                     DVYAVLAFFSGVLYHLCVVNWKLPQIPTFITIFTISLIIRLLVIKYKINLPNMESKRK
                     V"
     gene            9073..10041
                     /locus_tag="U1404_000141"
     CDS             9073..10041
                     /locus_tag="U1404_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000258167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEM5347136.1"
                     /translation="MVSITKKQHLDMFLKMQQIRDVDMKLNKLVRRGFVQGMTHFSVG
                     EEAAAVGPIAGLTDEDIIFSHHRGHGHVIAKGIDINGMMAELAGKATGTSKGRGGSMH
                     LANVEKGNFGSNGIVGGGYALAVGAALTQQYLGTDNIVIAFSGDSATNEGSFHESMNL
                     AAVWNLPVIFFITNNRYGISTDISYSTKIPHLYQRAAAYGIPGHYVEDGNDVIAVYEK
                     MQEVIEYVRAGNGPAMVEVESYRWFGHSTADAGVYRTKEEVNEWKAKDPLKKYRKYLT
                     ENKIATDEELDAIEAQVAEQVEASVKFAQESPDPDISVAYEDVFVD"
     gene            10332..11327
                     /locus_tag="U1404_000142"
     CDS             10332..11327
                     /locus_tag="U1404_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000005088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM5347137.1"
                     /translation="MAETKVMALREAINLAQSEEMRKDEKVFLMGEDVGIYGGDFGTS
                     VGMLDEFGPKRVRDTPISEAAIAGSAVGAAQTGLRPIVDLTFMDFVTIALDAIVNQAA
                     KTNYMFGGGLKTPVTFRVASGSGIGSAAQHSQSLEAWLTHIPGIKVVAPGTANDAKGL
                     LKSSILDNNPVIFLEPKALYGKKEEVNLDSDFYIPLGKGEIKREGTDVTIISYGRMLE
                     RALKAAEEVAAEGISVEVVDPRTLIPLDKELIIESVKKTGKVILVNDAYKTGGFIGEI
                     ASIITESEAFDYLDAPIIRIASDDVPVPYANILENAVLPNVEKIKAAIYKQVNKG"
     gene            11668..13056
                     /locus_tag="U1404_000143"
     CDS             11668..13056
                     /locus_tag="U1404_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase"
                     /protein_id="HEM5347138.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYIGAEGETVEAGASSAPAVEPAAAIEEV
                     PAGRTPVIVAPATAAKPQGSGKVRATPAARKLARELGIDLGLVPGTGANGRVHKVDVE
                     DFKGAAPKATPLAARIAADQGVDLSTLTGSGVNGKIVKNDVLAVLAPVAVETAAPVPK
                     AEEKPAKELPEGVEIIKMSPMRKAISKGMVNSYLTAPTFTLNYDIDMTNLMALRKQVL
                     EPIMNKTGLKVTFTDLIGLAVVRTLMKEEHRYMNASLINDAQEIELHKFVNLGIAVGL
                     DDGLVVPVVHGADKMSLSDFVVASKDVIKKAQSGKLKGAEMSGSTFSITNLGMFGTKT
                     FNPIINQPNSAILGVASTVQTPVVIDGEIKIRPIMALCLTIDHRIIDGMNGAKFMVDL
                     KNLLENPLELLI"
     gene            13330..15090
                     /gene="lpdA"
                     /locus_tag="U1404_000144"
     CDS             13330..15090
                     /gene="lpdA"
                     /locus_tag="U1404_000144"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002984864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM5347139.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYLGAEGESVEVGSAPAPAEVAQATADLK
                     AAGLEVPAAPAAAPQAPKAELAADEYDMVVVGGGPAGYYAAIRGAQLGGKIAIVEKSE
                     FGGTCLNKGCIPTKTYLKNAEILDGLKIAAERGINLASTNYTVDMDKTVDFKNKVVKT
                     LTGGVQGLLKANKVTIFNGLGQVNPDKTVVIGDKVIKGRSIILATGSKVSRINIPGID
                     SKLVLTSDDILDLREIPKSLTVMGGGVVGVELGLVYASYGTEVTVVEMADRIIPGMDR
                     EVSVELQKVLSKKGMKFLTSVGVSEIVEANNQLTIKLNDGSEIISEKALLSIGRVPQL
                     AGLENLHLELDRGRIKVNAYQETSIPGIYAPGDVNGTKMLAHAAYRMGEVAAENAIHG
                     NHHKAKLDFTPAAVYTHPEIAMVGLTEDQAIEKYGKENILIGRNSFTGNGRAIASNEA
                     HGFVKVIAEKKYHEILGVHIIGPVAAEMINEAATIMESELTVDDVAASIHGHPTFSEV
                     MYEAFLDVLGVAIHNPPKRK"
     gene            15230..16075
                     /locus_tag="U1404_000145"
     CDS             15230..16075
                     /locus_tag="U1404_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347140.1"
                     /translation="MRKIIFLDVDGTLVDYHNRIPESAIRAIRQARENGHLVYVCTGR
                     SRAEMQPELWEIGLDGMIGGNGSYVEHQDQVIMHQLLSEEDSRAIVDWLHERGLEFYL
                     ESNNGLFASENFRERARETLRIYSMNKGKTAEEVADQEVEDVIHGMIFDGQLYRNDLN
                     KVSFVLDSYQDHLDSKQAFPQLVANTWGGRGESALFGDLGVKDIDKAHVISVLLDYLG
                     ASQADTIAFGDAKIDISMLDYCAVGVAMGNGGAEILAMADMITDDVEEDGLYNAFERL
                     GLLDK"
     gene            16254..17052
                     /locus_tag="U1404_000146"
                     /pseudo
     CDS             16254..17052
                     /locus_tag="U1404_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303877.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
     gene            17252..19162
                     /locus_tag="U1404_000147"
     CDS             17252..19162
                     /locus_tag="U1404_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5347141.1"
                     /translation="MAKDYTDLATDIVAHVGGKENISSLKHCVTRLRFGLKDESKADT
                     DYLKARDGVVTVVQAGGQYQVVIGNHVPDVYVAVQKVAGISGDGALDIDEGDGPKGNL
                     FDRFVDLVSGVFQPSLGVLAAAGIIKGLVSILAATMGLNNDNSALYAILNTAGDGFFQ
                     FLPIVLAFNAARKFRMNEFTGMAIAMALVYPTLPGTFATLKEAGLNNVFGIPFVLPAA
                     GSYLQTVMPVLLAVWIASHIEKFMKKITLDVVKVFIVPFVTILISVPLTFLVVGPVAN
                     YASDLLSAGFTAVMGFSPLLYGILLGALWQVMVMFGLHWALVPLAILQFSQNGWSNIL
                     LAAALPNFTQTGVLLAIMMKTKESKVKSVAMPAFISSIFGVTEPAIYGVTLPMKTPFY
                     ISCAVSAVIGAGLSFFDLKNYAMGALGIFMYPGYVSPELGVTPMWIMMGFSLAAIVAS
                     FAIQMALPVPYLYGEPTEKKSVEETKESVPELKEIKQEIIASPLIGKVVKLEDVPDAV
                     FASGAMGKGIAIDPLDGILVSPAKAEITLVFPTKHAIGLRTENGAELLIHIGMDTVSL
                     AGKGFESFVQVGDQVEAGQKLLEFDLHQIKAADLPVITPIIVTNTADYEDILVTQESQ
                     INSGDYLLTTVK"
     gene            19356..21031
                     /locus_tag="U1404_000148"
                     /pseudo
     CDS             19356..21031
                     /locus_tag="U1404_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364488.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
     gene            complement(21146..21475)
                     /locus_tag="U1404_000149"
     CDS             complement(21146..21475)
                     /locus_tag="U1404_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM5347142.1"
                     /translation="MITMHLYYTGPADNARAFAQEMEASGIADRIRQQAGNTRYQYFA
                     PLDDPHSILLVDSWTDQAALDIHHASPMMQEILDLRSKYQLTVTAERYQSDETGIPER
                     DKDFLQR"
     gene            complement(21725..22639)
                     /locus_tag="U1404_000150"
     CDS             complement(21725..22639)
                     /locus_tag="U1404_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5347143.1"
                     /translation="MQPPLTDKQFKHTIDYDSRLLPYKYYHTCVMDGIPDILFHWHNE
                     FEINYVYGGTARYHIDYDYFNSQAGDIILIRPNAAHSIHPIEQRGHETDTLLFHLDML
                     GASQLDHTSMLYLQPLQTDVFKCILRIQPQDPGYAEIRQCLLTIFELVRHQPPYFELP
                     LKSRLFDFFYLLYRYRYIVRKNTDDMYRKNEKLRLLIEHIQQHYAENLTIEQLAEQMG
                     YTKTHFMTIFKQQTGTSCMEFIIQVRLRAATELLTNTLKPVLEIATEVGFNNLSNFNR
                     QFKQYYHTTPSSYRKQLRKNRTYTNFDK"
     gene            22751..24232
                     /locus_tag="U1404_000151"
     CDS             22751..24232
                     /locus_tag="U1404_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEM5347144.1"
                     /translation="MSRFPKNFLWGGAIAANQAEGAYNVDGRGLVQTDVTTGGTVNSP
                     RYTTYIDKDGKPGKYASMGHAGGHLPEGATYAVLEDHYYPNHKAVDFYHRYKEDIKLF
                     AKMGYSVFRLSISWARIFPNGDDAEPNQAGLDFYRSVFEECRKYGIEPLVSIWHFDIP
                     LNLEQRYGGWTNRKLIDFYVRYAETIFNEYKGLVKYWITFNEINNTIMFLDMFSEPKD
                     SDYQDAYQHLHHQFVASAKAVKLGHQIDPSYRFGNMICGITFYPGTCDPADILENQHK
                     WEQNIFYCSDAQAKGRYGSYANRLWKEHNVVLQMEEGDLDILAEGKVDMYTFSYYMST
                     VVTTHKVEDTVSGNFSIGAKNPYLTYSDWGWAQDPTGLQYYLEKIYDRYEIPLMVVEN
                     GLGALDTVEEDGSIHDDYRIDYHRAHVNAMADAIANGVDLIGYTTWGCIDLVSAGTGE
                     MRKRYGFIYVDMDDAGNGSLARTPKDSFYWYKKVIASNGEDVE"
     gene            24470..24853
                     /locus_tag="U1404_000152"
     CDS             24470..24853
                     /locus_tag="U1404_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5347145.1"
                     /translation="MKIEHVAIYTQDLEGMRNFFENYFNATSNQLYHNLKTSFKSYFL
                     TFEDGARLEIMTRDDVVDKPSQLNYLGLIHLAFSLGSEEAVDELTERLVAAGYLLLNG
                     PRITGDGYYEPCVLGFDDIQIELTV"
     gene            25147..26580
                     /locus_tag="U1404_000153"
     CDS             25147..26580
                     /locus_tag="U1404_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002358345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5347146.1"
                     /translation="MSKLPKNFLWGGAVAAHQLEGGWQEGGKGISVADVMTAGRHGVP
                     REITAGVLEGKYYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPKGDELEP
                     NEAGLQFYDNLFDECLKYGIEPVVTLSHFELPYHLVTEYGGFRNRQTINFFVRFAETC
                     FRRYKDKVKYWMTFNEINNQANYQEDFAPFTNSGIVYQEGENREAVMYQAAHYELVAS
                     ARAVKIGHEINPDFQIGCMIAMCPIYPATCKPSDILMAQKAMQKRYYFADVHVHGFYP
                     EHILRYWERKGISVDFTEEDREDLLEGTVDYIGFSYYMSFAIDSHRENNPHYDYLETE
                     DLVKNTYVKASDWEWQIDPEGLRYALNWFTDMYHLPLFIVENGFGAIDQVEEDGMVHD
                     DYRIDYLGAHIKEFIKAVDEDGVDLMGYTPWGCIDLVSAGTGEMRKRYGFIYVDKDDE
                     GNGSYARSPKRSFAWYKNVITTNGEEV"
     gene            26661..26900
                     /locus_tag="U1404_000154"
     CDS             26661..26900
                     /locus_tag="U1404_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family sugar transporter"
                     /protein_id="HEM5347147.1"
                     /translation="MVGFIAACLTTFGFVPQVIKVVKTKDTESISLGMYMMSVAGMSL
                     WLFHGIIQGDTALIIANSLSVTLAGIILVYKLVYK"
     gene            27125..27463
                     /locus_tag="U1404_000155"
     CDS             27125..27463
                     /locus_tag="U1404_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347148.1"
                     /translation="MESIVGIVVIVVVTVVLVYLLTNMWKIRAASVGQTDDTTLYFVR
                     FKGVNPPDLANSSVFNQVAKIKCAKGDTYQVTSTVNDVKLRDVIMDEFQLKSSEVVVY
                     YPPRLFFYAS"
     gene            27641..27955
                     /locus_tag="U1404_000156"
     CDS             27641..27955
                     /locus_tag="U1404_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIB"
                     /protein_id="HEM5347149.1"
                     /translation="MVKALIICAGGMSSSLIAKKTQTLLEEQGHKVEMNAVGVPEGGK
                     KINAAEYDLYLISPQTKMHFKQFEEAGKKVGKPIVQIPPQAYIPIPMGIEKMAKLVLD
                     NI"
     gene            28002..29975
                     /locus_tag="U1404_000157"
     CDS             28002..29975
                     /locus_tag="U1404_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5347150.1"
                     /translation="MLSTKEKMILQYLYQHQNIFSTSKVLAEHLSYTDRTIRTYIKKM
                     ASEISEEETGFAILSKQGYGYQLRISDEEKYHRFLSENQLIFGVDYSDAENRHKQILN
                     KLIFEEECILFDDLADQLFVSRSTLSHDFKHIREHLASYGLSIESKPYKGVYVVGEER
                     QKRHFIMDYFFSEHFYQNIHHFLSNDKSLALPLSFEELTIVVLDECRDSQLKLSDYII
                     QNLVIHLGLAIQRYQKGFIISPVTIDKEKYAEELAVATKIARRLSHRLEPQNRFPEEE
                     VVYIALHLISKTQLEVEKSSDRLLLRQALFEVLGRYDDEYGYQFSHDFSLIEGLLTHL
                     EVLVERLRHNLHIDNPLLDDIKTTYHDIFDLTQSLMAELSVFHSYSLSESEIAYVALH
                     LMASLERQKEKYKLNVLVICATGYGSAQMLKNRIKNELGQQVSISDVIGYYDLDNQKL
                     QGVDVIMSTIDLSGLVFKVPVITVSVFLTDQEVKEVKQRLADLRPSLQKTQVVERESN
                     LEKYFDQYFSEQRFLVVESAEKEMLLKQMISQLESEGLGNHQEFYKLIEARESLSTLV
                     FDKDIAVPHPLKPISEKHMISVAVIKNGLYWEEGYGQIRLVFLVSPSIYTNEGLSTIT
                     NRLVDLVDLPEVKKDIINSPDFETFKHVFLQRE"
     gene            29986..30300
                     /locus_tag="U1404_000158"
     CDS             29986..30300
                     /locus_tag="U1404_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIA"
                     /protein_id="HEM5347151.1"
                     /translation="MNTEELQMAAFGIILSSGNARSVIHKAFAAMREGDYDKAEELLE
                     AANADMLEAHHSQTGLLQEYASGTEVKVEIIMVHAQDHLMTTMTLREVALEMLALYRK
                     VG"
     gene            30315..30827
                     /locus_tag="U1404_000159"
     CDS             30315..30827
                     /locus_tag="U1404_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347152.1"
                     /translation="MSKGMASKKLQKTPEQLKQESKRKSQLFNRYMLFRYSLAVFFFA
                     NLYWLLVQLFQPSLYLILPSLMLIAIIIATAEQFKLYSAEESRLTKTEFVLRAQAILQ
                     GLIVVLVILGHISTLFPTFSNHISAKLFVIALQLLGLALVVLNIKRLEQVRQNTDKYY
                     LRFQIIRKYL"
BASE COUNT         9506 a         5541 c         7077 g         8759 t
ORIGIN      
        1 ctaacagaga cctttttcct ttacaaatag ggatagatat gatagaataa tggaagtgaa
       61 taatgagaaa aggggttggc gtcagtcaac cctttccctg tacacggatt tctgtatata
      121 gaatgaatga tagtacaagg gagtttactg tcaaaggaaa tagagagtcc tggatagtgc
      181 gaactatttg agtaatgtat ttctagcgac tgtaaaaata ggaggtgttt atgtcatcaa
      241 ttattgaatt ggtcacagca gcaattaccc ccgctattca aactccttac gagttggtag
      301 atgtggaata tggtaaaatg ggcggtgact atgtcctatc gatttttgtc gataaggagg
      361 gtggaatttc ccttcaagat acggcagatt tatccgaaaa gatcagtccg attttggaca
      421 ctatcaaacc agacccattt ccagaccaat acatgctgga ggtaacaagt ccaggtttgg
      481 aacgtccttt aaaaacggca gatgctgttg agaaggcggt tggaaagtac atccatgtca
      541 agctctatca ggcaattgat aaaatcaagg tttttgaagg aacgttgctc tcctttgatg
      601 gaacagacct gattatggag tatatggata aaactcgtaa gaaggaagtg actattcctt
      661 accagacggt ggctaaggcc cgtttggctg ttaagttata atgctctttc atgagtattt
      721 taaaagatat tagactttaa gaaaggacct tttgagcgca aaaggaaaac aacatgagta
      781 aagaaatgct agaagccttc cgtattttag aggaagacat gggtattaac aaagcggata
      841 tcattgatgc agttacagag tcgcttcgtt cagcttataa acgccgttat ggtcaatcag
      901 aatcagcagt gattgaattt gacgagaaaa aaggcgattt ccatgtattt actgttcgtg
      961 aagtagtaga tgaagtattt gatagccgac tagaaattag tctaaaagat gccttggcta
     1021 tttcatcagc ttatgaaatg ggtgacaaaa ttaaattcca agaagaccca gcggaatttg
     1081 gacgtgtagc tgctcaatca gctaaacaga ccatcatgga aaagatgcgc aaacaaaagc
     1141 gtgccattac cttcaatacc tacaagcaac atgaaaatga gattatgtca ggtacggtag
     1201 agcgttttga taatcgcttt atctatgtca accttggtac gattgaagca caattgtcaa
     1261 aacaagacca aattcctggt gaggttttcc aatctcatga tcgcatcgaa gtctatgtct
     1321 acaaggtaga agacaatggt cgtggtgtta acgtatttgt cagccgtagc catccagaaa
     1381 tgatcaaacg tcttatggaa caggaaattc cagaagtata cgatggaaca gttgaaatca
     1441 tgagtgttgc ccgtgaagct ggagatcgta cgaaagtggc tgttcgtagc cataatccaa
     1501 acgtagatgc catcggtacg atcgttggtc gtggtggttc aaatatcaag aaaatcacca
     1561 gcaagttcca cccagctcgt tatgatgcta agaatgaccg tatgattcct actgaggaaa
     1621 atattgacgt tatcgagtgg gtagcagatg aagcggaatt tatctacaat gctctcgctc
     1681 ctgccgaagt tgaccaagta ttgtttgaca cggaagatgg aaaacatgct acagtcgttg
     1741 taccagatga taaattgtca ttggcaattg gtcgtcgcgg tcaaaacgtt cgtttggcag
     1801 cacatttgac aggattccgt atcgacatca agtcagcatc ggagtatgaa gcttttgaag
     1861 caactcaata tgcaacagac gaagttgtag aagaagtcgc agaagaacaa gaataaggca
     1921 aaaggagcaa ccatggcaaa agctagaaaa atacccttgc gcaagtctgt ggtgtccggt
     1981 gaaatcatcg acaaacggga tttgctccgt attgtaaaaa ataaagaagg tcaagtattt
     2041 atcgatccaa caggcaaggc aaatggtcgt ggagcttata tcaagcttga caatgatgag
     2101 gcaagccaag ctaagaaacg tcgtgtcttc gatcgttcct ttagtatgga agtggccgaa
     2161 gaattttacg atgaattaat tgcctatgtt gatcataaga tcaagaggag agaacttgga
     2221 ctcgaataag agacagaaaa tcttaaattt attaggtttg gcccagcgag ctggtcgcct
     2281 ggtttcgggt gaggacctgg ttgttgaagc tattcaaaaa gggcaggcaa agttggtgtt
     2341 tttagccgaa gatgctgctg gaaatttaag taaaaaagta acagataaaa gtcataccta
     2401 tcaagtagaa gttgtaacag tgttttcaac actggaattg agtgcagctg tcggcaaggc
     2461 tagaaaagtt cttgcagtga cagacgctgg atttacaaag aagatgaggt ctattatgga
     2521 atagaacagg aggacaaggc attgtctaag aagagattga atgaaatagc ccgtgaatta
     2581 ggcgtaagca gtaaggaagt tgttgctaag gctcaagaat tgggttttga agtcaaaagt
     2641 catgcttcaa gcgtagatga agcaagtgct aaacgccttg cagaaagctt tggaggacaa
     2701 aaatcagagg caactaaagt tgcggcaaaa gttagcaagc ctgagaaggt tgatgaaact
     2761 ccaaaagtgg aaacagctaa ggtagaaaaa gctaaggaaa cacagccagt agtaaaagaa
     2821 gaagttgcgg caagcgcagt acaatcagtt ccacatcgtc cacagagtcg aaactttaag
     2881 gcagagcgtg aagcacgggc caaagagcag gctgctaagc gagctcaggg tcaaggaaaa
     2941 ggtggtcaag ctaaatctgg tcaggaccgt cgtgacaacc gtcaacaagg tcagggacgt
     3001 tcaaacaatg agcgaaatga tcgccgcgac aatcgtcgtg accagcgtcc agaagagcgg
     3061 aaagacaacc gatttggtga acgccgcgat aatcgtgcca accgtcgtca ggacaatcgt
     3121 tcaggtcggt cagctcgctt tgaacaaaga gaggctgcaa aaccagcagg acctaaaatt
     3181 gacttcaaag cgcgtgctgc tgctttgaaa gcagaacaaa atgcggagta tgctcgtacc
     3241 agtgaagaac gttttcgtca ggctcaggaa gctaaaaagc aacctaagaa gccaaaagaa
     3301 attaagtttg aagaaccggt tgtggaaagc aaaccatttg tgaagcctgc acctgttgca
     3361 tcagtaccag agcaagttgc agaaactact gtagataccc gtcgtaagaa acaagctcga
     3421 ccagataaaa aacgttactt taatagtgac gaagaagatg gtccacggaa acaacaaaga
     3481 aatcgaaata gtcaaaatca agtgagaaat caaagaacaa gtaactggaa taacaacaag
     3541 aaaaataaaa aaggcaaggc taaccaacct gccaaacctg tcacagaacg caagttccac
     3601 gaattgccaa ctgaatttga atacactgct ggcatgaccg tcgcagaaat tgcaaaacga
     3661 atcaaacgtg aacctgctga aattgtgaaa aaactcttcc ttatgggagt tatggcgact
     3721 caaaaccaat ctttggatgg agatactatc gaactcctca tggttgatta tggtattgaa
     3781 gcgaaagaaa aggtagaggt cgataacgca gatattgagc gtttcttcgt agaagagggc
     3841 tacctcaatg aagaagagat gacagaacgc ccacctgttg tgactatcat gggacacgtt
     3901 gaccatggta aaacaacctt gttggatacc ctacgtaatt ctcgtgttgc tactggggaa
     3961 gctggaggta tcacacagca tatcggtgcc taccaaattg aggaagctgg taagaaaatt
     4021 accttcttgg atactccagg acacgcggcc tttacttcta tgcgtgcacg tggtgcatct
     4081 gttaccgact tgaccatcct agtcgttgct gcagatgatg gtgtcatgcc acaaacgatt
     4141 gaggctatca accactcaaa agcagctaat gtaccaatca ttgtagctat caacaagatt
     4201 gacaagccag gtgcaaaccc agagcgtgtc atcggtgaat tggctgagca cggtgttatc
     4261 tcaaccgctt ggggtggaga atctgaattt gtagaaatct cagctaagtt taaccaaaac
     4321 attgatgaat tgttggaaac tgttcttttg gttgctgaaa tccaagaact gaaggcagac
     4381 ccaactgttc gtgcgattgg tacagttatc gaagcgcatt tggataaagg gaaaggtgcg
     4441 gttgcaaccc tcctcgttca acaagggaca cttaatgttc aagacccaat cgttgtcgga
     4501 aataccttcg gacgtgttcg tgccatgaca aacgaccttg gtcgtcgtgt taaaactgct
     4561 ggtccatcta caccgatatc tattactggt ttgaacgaag cgcctatggc aggcgatcat
     4621 tttgcagttt acgaggatga gaaatcagcc cgtgcagcag gtgaagaacg tgctaaacgt
     4681 gctcttctta aacagcgtca agcaacgcaa cgagttagtc ttgaaaacct ctttgatacc
     4741 cttaaagcag gtgaggttaa gtcagttaat gtgattatca aggccgacgt acaaggttca
     4801 gttgaagctc ttgcatcatc gcttcaaaag attgaagtag agggagtacg tgtcaatatc
     4861 gtccactctg cagttggtgc tatcaatgaa tcagatatta ctcttgcgga agcttcaaat
     4921 gctcttgtga ttggtttcaa cgttcgtcca acagctgaag cgcgtagcca agctgaagca
     4981 gatgatgttg aagtacgtct tcacagcatc atttacaagg ttatcgaaga gatggaagat
     5041 gccatgaaag gtatgcttga tccagaatat gaagaaaaaa tcattggtga ggcaatcatt
     5101 cgtgaaacct tcaaggtatc caaagttgga acgatcggtg gtttcatggt cgtacgtggt
     5161 aaggttaccc gtgattcaag tgttcgagtt atccgtgatg gtgttgtagt atttgatggt
     5221 aaactagtta gtttgaaacg ctataaagat gacgtgaaag aagttggtaa tgcccaagag
     5281 ggtggtttga tgattgaaaa ctacaacgac ttgaaagttg atgataccat tgaagcttac
     5341 atcatggaag aaatcaaaaa ataatatttt ctcattgtca aaatcataga caagtgattt
     5401 tgtcgaggaa gtgacaattt aatagatttt agtagatttt aaagcaatag tttttaatct
     5461 acttggatta ttcaagctgg ggaaactcag cttttctatc atctaagaaa ggaaagaata
     5521 tggcgaatca ttttcgtaca gaccgtgtcg ggatggaaat caagcgcgaa gtcaatgaga
     5581 ttttgcaaaa gaaagttcgt gatccacgtg tgcagggagt gaccattaca gatgttcaga
     5641 tggttggcga tttgtcaatg gccaaggttt actacacaat catgagtaat ttggcatccg
     5701 ataatcaaaa agcacaaacg ggtcttgaaa aagcgacggg aaccattaag agagaacttg
     5761 gtcgtaagtt aactctttat aaaattccgg atttggtctt tgaaaaagac caatcaattg
     5821 agtacggcaa taaaattgac caaatgttgc gtgctcttga tcagaaagat taacaacaaa
     5881 agtcggatgg aaacattcgg ctttttctgg ctcggatgct ttgtccatat atggtggcgt
     5941 ttacaagccc tcggaaagat gttatactaa tactcaatga aaatcaaaag tagactagga
     6001 aacgaagtcg aagatagaac tctgtcacta tcttatttca aggtaacagg ctgaaaacct
     6061 ccactggagc ttttcactca tcaaggcaag ttgacaacgg ataattttga ttttcgaaga
     6121 gtataagacc aaagatagag cacaggagga agttatgaaa acatttatta gtaaactgat
     6181 gttagtgtcc acggttgtac tattagctgc ttgtcagtct aatcaggtaa aaggtggtga
     6241 gagttctagt tctagtgctt caagccaagt ttcagatggt tctagtttgc agcaagcatc
     6301 aacaatagca tctagctctg agacgcaagc atcctcagtg accactcctg agctaagtga
     6361 agtataccaa tcagttattg atcgttatca agcgaatatg gggcagtctg ctgaggcaat
     6421 taatcaggat gaggtcagta gctatctgag cttattaact agccaggggc aagaatacag
     6481 tggaatattt tatagtttgt atgatgtcaa ccatgatggt acagaggagc tgcttctagc
     6541 tttggacaag tcgggagaat atgtcttaat tgatctctat actcagcttg ccgatgagag
     6601 tctacgtttg gtggataatt tccgcaatct tggatttgaa attggaccga acgccctact
     6661 tcgtccttta caggatggaa catacttatt tgaaggagat ggtatttttc gcatttatca
     6721 atacaatgcg atgattccag gtttaaaacg gatttctgaa tcagatacca atcctgaaac
     6781 ttctcccttg cttgagttga aaagcttgca ttgggttaag ctatagattt tatcaatgat
     6841 tattcctagg ctgggtttcc cagccttttg tagtttctaa gaactttaag ttttcttttg
     6901 gtaatcttta atctttcttt taggaaggaa aggtaaacta ggagcatatc aggaagggat
     6961 acgacttcct aaagaaaagg aatctacatt atgaaaacaa atcttaaaaa attactttac
     7021 tctggtgtta ctcttatgag ccttgtggtc ttagcagcat gttcatctac ttcaagttca
     7081 acgactactt caagctcagc agcaactagt cagacaagtg tagcgacaat ctcaaataat
     7141 agcacttcat cagattcaag ctcgtcaact attgactggt cagcccttcc aacgacagaa
     7201 gtgacgcttt caaatgatgg cttgaaaatt actgagggtg gaacctatat tttgactggt
     7261 tcaacaacag ctggtgtaac ggttgaaaca gatgccaatg ttcgcatcat tctagcaggt
     7321 gctgagattt caagttcaga tactgcagca atcaatgtta ttaatgctga caatgttgaa
     7381 ttggaaatca aagatggtac gacgaataca gtgaaagata ccagcaatca tacagacacc
     7441 aatattgaag gggctatcca tgttgaagct gatttgacca ttacaggaaa tggtagcctg
     7501 accgttgaag gcaacttcca agacggcatc gtatcgacag atgaccttat cgtgaattca
     7561 ggaaacatta ccgtcactgc agtggatgat ggtatccgtg gtaaggattc attgacaatc
     7621 aatggtggta caatcaatgt catagcaggt ggtgatggta tcaagtctac aaatgataca
     7681 gatactacca aaggttatac aactatcaca ggtggtgaaa ttactgtaaa agcaggtgat
     7741 gatggtatta aagcggagac ggctttgaca attgacggag gtaccattac agtatcagaa
     7801 tcagcagaag ctcttgaagg aacgaatata accatcaatg gtggtacatt agatgtttac
     7861 ggttcagatg atgctattaa tgcggcaagt acaacgtcat cagaaatctt catcaaggta
     7921 actggcggtg acttgaaagt agctgtaggt agtggagata cggatgcctt tgatgctaat
     7981 ggagacattt atatatctgg tggtacaatc gatgtaacag ctcaatctgc ttttgacttc
     8041 gacggaactg ctgaattgac aggaggtact gtgacagtta atggtgagca gattactcaa
     8101 atcacagcaa caggaccagg tgctggtggc cacggtggct ggtaatcaat aataatacaa
     8161 aaaggtctga gttgacgaac tcagaccttt cgtttgcttt ccatattggg aagattgatt
     8221 ttgtatttaa ttaccaatag tcgaatgatt aaagaaatgg taaaaatagt gatgaaggtc
     8281 ggaatttgtg gtaatttcca atttacaacg caaagatgat agaggactcc tgagaaaaat
     8341 gcaaggacag catagacatc ttctttaaga acaatgggtg tttcattgac gagtaaatca
     8401 cgggcgattc cgcctccgac acctgtcaaa gctgccagaa taccactggt tagagcgttt
     8461 agctggagag agatgccagt actggctcca atgagggcga agatggctag accgattgca
     8521 tcaaagataa ggtttgtctg ggaaaggaaa tgaatcatct tcttatcaag tggtttgtcc
     8581 tgctttagat tgataacaat caagtacatg ctaatcgcta ctccgagaga taaatagatg
     8641 gctgtaggat cagtcaaggc ggcaggaatg cgattggcca tcgtatctcg aataattccc
     8701 ccaccaacgg cggtaatgat accgagcaag ctaattccaa aaatatctaa ctttttctta
     8761 aatcctttta cggtccccga aacagcaaat gcgatagtgc ctatgtagtt acaaatcata
     8821 agaaataaat cgaattccat aagaacctcc gtacctatat taacagaaag aaagacggcg
     8881 tgcaagctta tttcaaagtt tgtgaaaaaa gtttcaaaca agtaaagtga atcttttgag
     8941 gatttgtgaa aaaacgcact aaatcaaggt tttcacgaaa atttctgtaa aaagaaaacg
     9001 gttcaattac ttgccatttg tgaaatattg gtctatcata gtacagaaag agaaaaacct
     9061 ttggaggaaa ttatggtatc tatcacaaaa aaacaacatt tggacatgtt cttgaaaatg
     9121 caacaaatcc gtgatgttga tatgaaatta aacaaattag tgcgtcgcgg tttcgtacaa
     9181 ggtatgactc acttctcagt cggtgaagaa gctgcggctg ttggccctat tgctggattg
     9241 acagatgagg acatcatctt ctcacaccac cgtggtcacg gtcacgttat tgcaaaaggt
     9301 attgacatca acggtatgat ggctgagctt gctggtaagg caacaggtac atctaaaggc
     9361 cgtggtggtt ctatgcactt ggctaacgtt gaaaaaggaa actttggttc aaacggtatc
     9421 gtaggtggtg gttatgccct tgcggtgggt gcggccctta cgcaacaata cctcggtaca
     9481 gataacattg ttattgcctt ctcaggtgat tcggctacta acgaaggttc cttccacgaa
     9541 tcaatgaact tggcagctgt ttggaacttg ccagttatct tcttcattac aaacaaccgt
     9601 tacggtattt caactgatat ttcttattct actaagattc ctcacctcta ccaacgtgct
     9661 gctgcatacg gtattccagg tcattatgtt gaggatggta acgacgttat tgccgtttat
     9721 gaaaaaatgc aagaagtcat cgagtacgtt cgtgcaggaa atggtcctgc catggtcgaa
     9781 gttgaatcgt accgctggtt tggtcactca actgccgatg caggtgttta ccgtactaaa
     9841 gaagaagtca atgagtggaa agcaaaagac ccacttaaga aataccgcaa atacttgaca
     9901 gagaacaaga ttgcgactga cgaagaattg gatgccatcg aagcacaagt tgcagaacaa
     9961 gtagaagcat ctgtgaaatt cgcacaagaa agcccagatc cagacatctc agtagcttat
    10021 gaggatgtgt ttgtagacta agtaacgaga acgttaaaag gacacagcga aaataagcgg
    10081 taagtccgaa atctttgatt tcgtagacgc accctcgtca agacaactag tattttcaca
    10141 ggtgaaaccg aagaaagtac agttgtctac gacgcagtaa ctgcaatagt taaacatgaa
    10201 attcgcacag tccttagttc gagtacaatt ctaaggtgtc ttaagctggg acaataaaca
    10261 attacatcgt agtaattgtt tggttttcct tagttcagta tagataaatt gatataaatt
    10321 aggagtaaaa aatggctgaa acaaaagtaa tggccttgcg tgaagcgatt aacttggctc
    10381 aaagcgaaga aatgcgtaag gatgaaaaag tattcttgat gggggaagac gtcggtatct
    10441 acggcggtga cttcgggaca tctgttggta tgttggacga atttggtcca aaacgcgttc
    10501 gcgacacgcc tatctctgag gctgcaatcg ctggttctgc ggttggtgcg gctcaaacgg
    10561 gtcttcgtcc aattgttgac ttgactttca tggacttcgt aacgattgcc cttgatgcga
    10621 ttgttaacca ggctgccaaa accaactata tgtttggtgg tggcttgaag acacctgtaa
    10681 ccttccgtgt agcatcgggt tctggtatcg gttctgctgc ccagcactca caatctcttg
    10741 aagcttggtt gactcacatc ccaggtatca aggttgtcgc acctggtaca gctaacgatg
    10801 caaaaggtct tttgaaatca tctatccttg ataacaaccc agttatcttc ttggagccaa
    10861 aagcacttta tggtaaaaaa gaagaagtca acttggactc agatttctac attccacttg
    10921 gtaagggtga aatcaaacgt gaaggtactg atgtaaccat tatttcatac ggtcgtatgt
    10981 tggaacgtgc cttgaaagct gctgaagaag tggctgctga aggtatcagc gtagaagtgg
    11041 ttgacccacg tacccttatc ccattggata aagaattgat catcgaatct gtgaagaaaa
    11101 ctggtaaggt tatcttggtc aacgatgctt acaaaacagg tggtttcatc ggtgaaatcg
    11161 catcgatcat cacagaaagc gaagcctttg actatttgga tgcaccaatc atccgtatcg
    11221 cttctgacga tgtaccagtt ccttacgcaa acattcttga aaacgcagta ttgccaaacg
    11281 tagagaaaat caaagcggca atttataagc aagtaaacaa gggttaatct tattgtcatc
    11341 cgcttatctt ttctggctgt gttgatttgg cttgcctaac gtaagttatg cctgcaccaa
    11401 atcgccttgt cagaaaagca atcggaaaga cgataaccct aatatgctag aaataaaatg
    11461 ttctagcatg actaagaatg cttggaaaag aattgagccg cttcgattat cgaagtctgg
    11521 tttggttctt gacaaggtaa gaaactgaaa gaaaggaatt gaacccgtcc ggaaaactcg
    11581 gaaaaaagat aaatcgttac gaaaatcagg attttcgacg atttcctatt tttcattcgt
    11641 tttctgttcg gacttggtat cttaataatg gctattgaaa tcattatgcc taagctcggt
    11701 gtggacatgc aagaaggtga aatcatcgag tggaaaaaac aagagggcga ttttgtcaac
    11761 gaaggcgacg tcatcttgga aatgatgtct gacaagacca gcatggagct ggaagcagaa
    11821 gagtcaggcg tcctattgaa aattgttcac ggaaacggtg ctaccgttcc tgtaacagaa
    11881 gttattgcct acatcggtgc tgaaggtgaa acggttgaag ccggcgcttc atctgctcct
    11941 gctgttgaac cagcagcggc tattgaagaa gtacctgcgg gtcgtacacc agtaatcgtt
    12001 gctcctgcaa ctgctgccaa accacaaggt agtggcaagg tgcgtgcaac gccagctgcg
    12061 cgtaaattgg cgcgtgagct tggaatcgac ttgggtcttg ttccaggaac aggtgctaac
    12121 ggtcgtgtcc acaaggttga cgtcgaagac ttcaagggag cagctccaaa agcaactccg
    12181 cttgcagccc gtattgcagc agaccaaggt gttgacttgt caacccttac aggttcaggt
    12241 gtcaacggta agattgtcaa gaacgacgtt cttgcagtac ttgctcctgt agctgtagaa
    12301 actgctgctc cagtaccaaa agcagaagaa aaaccagcta aagaattgcc agaaggcgtt
    12361 gaaatcatca agatgagccc aatgcgtaag gcgatttcaa aaggtatggt caactcttac
    12421 ttgactgctc cgacatttac acttaactac gatattgaca tgaccaacct catggcactt
    12481 cgtaagcaag tccttgagcc aatcatgaac aagactggtt tgaaagtaac ctttacagac
    12541 ttgatcggtc ttgcggttgt tcgtactttg atgaaagaag aacaccgtta catgaacgca
    12601 tctttgatta acgatgcaca agaaatcgaa ttacacaagt tcgtcaacct tggtatcgca
    12661 gtgggtctag atgatggctt ggtggttcca gttgttcacg gcgcagataa gatgagcttg
    12721 tctgactttg tggtggcttc gaaagatgtc atcaagaagg ctcaatctgg taagttgaag
    12781 ggggctgaaa tgtcaggttc gaccttctct atcaccaact tgggtatgtt tggtactaaa
    12841 acctttaacc caatcatcaa ccaaccaaac tcagcaatcc ttggtgtagc atcaactgtt
    12901 caaacaccag ttgttattga cggcgaaatc aagatccgtc caatcatggc actctgctta
    12961 accatcgacc accgtatcat tgatggtatg aatggtgcta agttcatggt tgacttgaag
    13021 aacttgctgg aaaacccatt ggaattgttg atctgagata agatgcaaaa ggcgttaaga
    13081 aaaacgtatg aaaataggaa atcaacgatg tgccttgagg cacgaggcga tttatctttt
    13141 tcaataggtt tttagcctgt gctcaatttg gtaaagagaa aaaataaaga aagggaataa
    13201 gagcgagaga gttttagcaa ttgaacccga gcggaaagct cggaaaaaag ataaatcgtt
    13261 tagaaaatca ggattttcta cgatttccta tttttcagtc gctttctctt cgctcttggt
    13321 atcataacta tggcaattga aattattatg ccgaaacttg gtgtagatat gcaagaaggc
    13381 gaaatcatcg agtggaaaaa acaagagggt gattttgtca acgaaggtga tgttatcttg
    13441 gagatgatgt cagacaagac aagtatggaa ttggaagcag aagaatcagg tgtactcttg
    13501 aaaatcgttc atggtaacgg tgcaactgtt cctgtaacag aagtcattgc ttaccttggt
    13561 gcagaaggcg aatcagttga agttggtagc gcacctgctc cagctgaggt tgcacaagca
    13621 actgccgact tgaaagcagc tggtttggaa gtgcctgcag ctcctgcagc agctccacaa
    13681 gctcctaagg ctgaattggc agctgacgag tacgacatgg ttgttgtcgg tggtggtcct
    13741 gctggttact acgcagctat tcgtggtgct caattgggcg gtaaaatcgc tatcgttgag
    13801 aaatcagaat ttggtggtac ctgcttgaac aagggttgta tcccaactaa gacctacctt
    13861 aaaaacgctg aaattcttga cggcttgaag attgctgctg agcgtggtat caaccttgct
    13921 tcaacaaatt ataccgttga tatggacaag acagttgact tcaagaacaa ggttgtgaag
    13981 acattgactg gtggcgttca aggtctcttg aaagctaaca aggtaacaat cttcaacggt
    14041 cttggtcaag taaatcctga caagactgtt gtcatcggcg acaaggtcat caaaggtcgt
    14101 agcatcattc ttgcaactgg ttctaaggtt tctcgtatca acatcccagg tattgattct
    14161 aaattggtgt taacttctga tgatatcctt gacttgcgtg aaattcctaa gtcactcact
    14221 gttatgggtg gtggcgtagt cggtgtggaa cttggtttgg tttacgcgtc ttacggtact
    14281 gaagtaacag ttgttgaaat ggctgaccgt atcattccag gtatggaccg cgaagtgtct
    14341 gttgaattgc aaaaagtcct ttctaagaaa ggcatgaaat tcttgacatc agttggagta
    14401 tctgaaattg ttgaagccaa caatcaattg acaattaaat tgaacgatgg ttcagaaatt
    14461 atctctgaaa aagctcttct ttcaattgga cgtgtacctc aattagctgg tcttgaaaat
    14521 cttcaccttg agttggatcg cggtcgtatc aaggttaatg cttaccaaga aacttctatc
    14581 ccaggaattt atgcacctgg tgatgtcaac ggtactaaga tgttggcaca cgctgcttac
    14641 cgtatgggtg aagtggcagc tgaaaatgct attcacggta accaccacaa ggctaaattg
    14701 gacttcacac cagcagcggt ttacacacac ccagaaattg ctatggttgg tttgactgaa
    14761 gatcaggcta tcgagaaata tggtaaagaa aacatcctta tcggtcgcaa cagctttact
    14821 ggtaacggtc gtgctattgc ttctaacgaa gcacatggtt tcgtaaaagt tatcgctgag
    14881 aagaaatatc acgaaatcct tggtgttcac atcatcggtc cagttgcagc tgaaatgatt
    14941 aacgaagcag caactatcat ggaatctgag ttgacagttg atgacgtggc agcatcaatc
    15001 cacggtcacc caaccttctc tgaagttatg tacgaagcct tccttgatgt tcttggtgtt
    15061 gcgattcaca acccaccaaa acggaaataa tcagataagc aaaaagaaag tccatgtggc
    15121 tttctttttt tgatgttcat aggatagtat caatctttcg cagtttttga ctgttatttg
    15181 atagaaaaac agactatact tgtagtagaa aaaggcaagg agaataaaga tgcgcaagat
    15241 tattttttta gatgtagacg gaaccttggt tgactatcat aatcggattc cagaatcagc
    15301 tattcgtgct attcgacaag ctcgcgaaaa tgggcacttg gtctatgtct gtactggtcg
    15361 cagtcgagca gaaatgcagc cagaattgtg ggagattggt cttgacggaa tgattggtgg
    15421 caacggctct tatgtcgagc atcaagatca ggtcatcatg caccagctcc tatcagaaga
    15481 ggatagcaga gcgattgtgg attggctcca tgaacgcggc ttggaatttt atctggagag
    15541 caacaatggc ctctttgcca gtgagaattt ccgtgaacgt gcccgtgaaa ccctgcggat
    15601 ttattccatg aataaaggaa aaacagcaga agaagtggcc gatcaggaag tagaagacgt
    15661 tatacacggc atgatttttg atggtcaact ctaccgcaat gacctcaaca aagtcagttt
    15721 tgtgctcgat tcctaccagg accacttgga ttccaagcaa gcctttccgc aactggtcgc
    15781 aaacacctgg ggaggtcgcg gagagtcagc tctctttggt gacttggggg tgaaagacat
    15841 cgacaaggcc catgtcattt ctgtattgct agactatttg ggtgctagtc aggcagacac
    15901 tatcgccttt ggtgacgcta aaattgatat ttccatgctg gactattgtg cggttggggt
    15961 cgctatgggc aatggcggag cggaaatctt ggctatggca gatatgataa cggacgatgt
    16021 agaagaagac ggcctctaca atgcctttga aagattggga ctacttgaca agtagctctc
    16081 agaataaatc atagtatccc ttgcaaaacc gcttacaatc tgataagata agagtaggat
    16141 tgttactgat aagcaggcaa aacctaagta gatagtgaag gggctggcaa cagtcgtatt
    16201 tgctatatgc ttgggttctt ttttatcagt cgagtaaata ggcggtaaag tagatgcaga
    16261 ttgaaaaagt ttataacaac aatgtcattc aagcaataga tcagcagggc cgtgagttga
    16321 ttgtcatggg gaaaggatta ggttttcaga aaaaagcagg ggaagaatta gacaccagca
    16381 aaatcgagaa aacctttgtg ctacaaaatg actaccaaca atcagattta tcgagtctgt
    16441 acctgcaaat ggagagcggt gaagtcgaag tagtcaatgc cattatcaat agggcagaag
    16501 aaactttaga agttcagttt gatttgtctt tgtatctagc cttagcagac catttacatt
    16561 ttgtatttca gcgatgccgt gaaggtatct ttattgagaa cccgctgtct tgggaagtac
    16621 gtaagtttta tccgaaggaa taccaaattg gtttagaagc cttgcagttg gtgcaggagc
    16681 gtttaggctt ggaactagga aagggagagg cctcgtctat cgctctccat ctggtaaatg
    16741 ctcagaagaa tggtgctttt ggcaaggaaa cccaaacaat tagtaaaatc gtgactcaga
    16801 ttttagacat tgtccgcctt cattttggta gtgtgaccta cgaggaggat accagctatc
    16861 atcgatttgt aacacatatt cagtattttg ctcaacgtgt ggccaatggg gttgttgaag
    16921 gccaattatc cagattcctt cgcctgtaca acaaaaattc gccagcatat tgcggaagtt
    16981 taccattttg aaatgtccaa agatgaacaa gtctatttaa ccattcatat tcaacgttta
    17041 aaaactagtt aaaaaattaa aaaagaaaaa aacggaaaac gcttgcaatt taatttgcga
    17101 tgtgttatca taatctcaac aaaaggattg ttactggtta gcaggcaaaa cctaaatata
    17161 tacaagatac tctttttggc ttgggccaag aggtagtgtt tggtatatgt ttaggttttt
    17221 ctgtttttcc agaaaagaaa ggagccggaa aatggcaaag gattatacag atttagctac
    17281 agatattgta gctcatgttg gtggaaaaga aaacatcagc agtttgaaac actgcgtgac
    17341 tcgtcttcgt tttggtctca aggatgagag caaggctgat acagactact tgaaggcgcg
    17401 tgatggcgtt gtgacagtag ttcaagcagg tggtcaatac caagtggtta tcgggaacca
    17461 tgtaccagac gtttatgtgg ctgtgcaaaa agttgcaggg atttcaggag atggcgcctt
    17521 ggatattgat gaaggtgacg gaccgaaggg aaatctattt gaccgatttg ttgacctagt
    17581 ttcaggtgtt ttccagcctt ctttaggagt gcttgcagct gcagggatta tcaaaggatt
    17641 ggtatccatc ctagccgcta caatgggttt gaacaatgat aatagcgccc tatatgctat
    17701 tttaaacaca gctggagatg gattcttcca attcttgcca atcgtcttag ctttcaatgc
    17761 tgcacgaaaa ttcagaatga atgaatttac tggtatggca attgctatgg cattggttta
    17821 cccaactctg ccagggacat ttgcgactct aaaagaagcg ggtctaaata atgtttttgg
    17881 cataccattt gtacttccag cagcaggtag ctacttgcaa actgtgatgc ctgtcctact
    17941 tgctgtctgg attgcttctc atattgagaa attcatgaag aaaattacgc ttgacgtagt
    18001 taaggtcttc attgtaccgt ttgtgacaat tctaatttca gttccattga cattcttggt
    18061 tgtaggtcct gtcgcgaact acgcttcaga tcttttgtct gcaggcttta ctgcggttat
    18121 gggctttagt ccactacttt atggtattct acttggtgct ttatggcaag taatggttat
    18181 gttcggactt cactgggcct tggtaccact tgcaatactt cagttttctc aaaacggatg
    18241 gtcaaatatt ttgttagctg cagcgcttcc aaactttact caaactggtg ttcttttggc
    18301 aattatgatg aaaaccaaag aatcaaaagt gaagtcagtt gcgatgcctg cttttatctc
    18361 ttctatattt ggtgtcactg agccagcaat ctatggtgtt actcttccta tgaaaacacc
    18421 attctacatt tcttgtgcag tgtcagcagt aattggtgca ggtctctcat tctttgattt
    18481 gaaaaactat gctatgggtg ctctcggtat ttttatgtat ccaggttatg ttagtcctga
    18541 actaggtgtg actccaatgt ggattatgat gggcttctct ttggcggcaa tcgtcgcatc
    18601 cttcgctatc caaatggcgc ttccagttcc ttacttatat ggagaaccaa ctgaaaaaaa
    18661 gtccgttgaa gaaacaaagg agtctgttcc agaattaaaa gaaattaaac aagaaattat
    18721 tgctagtcca ctaatcggta aagtagttaa attagaagat gttcctgatg cagtctttgc
    18781 ttcaggtgca atgggtaaag ggattgctat cgatccccta gatggtatac ttgtttctcc
    18841 agctaaggct gaaataactc ttgtattccc aaccaaacat gctattggtc ttcgtactga
    18901 aaatggagca gagctcctta tccatattgg tatggataca gtctctctag ctggtaaagg
    18961 ctttgaatcc ttcgtccaag taggtgacca agttgaagca ggacaaaaat tgctggaatt
    19021 tgatctccac caaatcaaag cagctgacct accggtcatc actccaatta tcgtgaccaa
    19081 tacagctgac tatgaggaca tcttggtaac ccaagaaagc caaatcaaca gtggtgatta
    19141 cctgttgaca acggtcaaat aactacattt tcgtatagaa acaatgaaat atttctatac
    19201 aaaacaggaa aaagactatt tgtatagatt atcgtaacaa atctaaatag atgctaatca
    19261 gaacgtactt tccacggatt ttgcgaatat attagtattt atttagattt tattttgaag
    19321 aaagtttgga tatattaata tctagaggtg tgtaaatgaa aaagattgct tattttttac
    19381 tgagtttaag tctatttgtt gcttgtggac aaagtaagga agtaacaaat acactgttta
    19441 agaacgacat cacgaaaaca atcagtagtg gtgaggtaaa ggggaaaaag gatagcacga
    19501 ccgctacgat tgaatggtta ggaatcccct atgcagcgga accagtaggt gagctacgtt
    19561 ggaaggcgcc acagcctgta gaaaaatggg aaggtagttt tgatgcaact gaaatcggat
    19621 ctccttttat acaaatctca aaaggggaag tagtcggttc agaaggagcg ctaaatcttg
    19681 atgttgttag acctgataat acggaggcta atctaccagt gattgttttt ctgcatggag
    19741 gaaataatca aacaggtcat gcacaagaaa tcaaaggaaa tggctttgta aatgacatca
    19801 atgccgttta tgtttcaatc aattatcgct tgggcgctct tggtttcaat ccgttggaag
    19861 cacttaagat aggaaccgat gaagaaaatt ctgggaatta tactctctta gacattgcgg
    19921 cagcattgga ttgggtggaa gaaaacattg aggtctttgg tggtgataag gataatgtga
    19981 ccctagcagg cttttcagct ggtggtcgtg atgtaatggc aatattaatt tctccactat
    20041 ttaaagataa atatgataaa gcaatatcat ttagtggagg aatgactcta gcagatgaaa
    20101 cggatagtca agatattttt gcaacggcga tagcaccatt agttgttgaa gatggaatca
    20161 agtccacaga acttgaagca aaagaatggt tgttatctaa cgattgtcaa gtagctgatt
    20221 atctttatgg acttcctgcg gagagtttga cttcgttgat gggaaatgct ggtattcgta
    20281 tgtctgtctt tccgcacctg tataaagatg gggtagtcat tccgaaggaa ggatttgata
    20341 cttcaaatta taatgatgtg cctcttcttt taataacagg aactagtgaa ttttctttat
    20401 tcacagcttt cgatccctat tttgtaaatt ctgtgacaga tggcagtcta ttttcagatg
    20461 ctgacaaatt aaaagaattt atatttactg aatcatatgg tagtgctctg tatcgtctgt
    20521 ctaacactgt agatagtgct agaaaattgc aaggaacata taaatcacca atatacattg
    20581 gagaaatttc ttatggagat aatacagaga ctgctccaaa aacagctcag ttgttgggtg
    20641 cgtttcatgg cgtatttgaa cctttacttc aacaaccatc aaactatgct actttcattg
    20701 tgaagatttc aattctgaag gtgctaaaca actaagccaa cagtttaaag catatttgaa
    20761 aggatttatc acaagtagta accctgaagg agaaaaatta ccacaatggg aagagtggac
    20821 agctgacggc agtcaggtaa tgaaatttga tgctagttta gaaaaagcta aaattgaaat
    20881 gggtgaagat tctcaaacta ctgaggatat tgtcgcgaac cttcgagcag atagtacttt
    20941 atctgcagat aaaaaacaag ttttaattga caatgtattg aacggtcgtt ggtttagtca
    21001 accattggat ggtttgaaag ttaatgaata gtttattttt tgatgtatta aaaaaatata
    21061 aaagtaaaaa gcaacacaag gtgttgacaa cggtcaaata aaaaataaag tggttggcag
    21121 tgccaatcac ttttttgaat cttgtttagc gttgaagaaa atccttatct cgctcaggaa
    21181 tgcctgtctc atcactctga tagcgttcag cggtgacagt tagctggtac ttactacgta
    21241 agtctaggat ctcctgcatc attggagaag catggtggat gtccaaagct gcttggtctg
    21301 tccagctatc aaccaagagg attgaatgag gatcatcgag cggtgcaaag tattgataac
    21361 gtgtatttcc agcctgctgg cgaatgcggt cggcaatgcc actagcttcc atttcctgag
    21421 cgaaagcacg tgcattgtca gctggtccag tgtagtagag gtgcatggta atcatagtat
    21481 aagatataga gggcgttcag cggacacaga caaaatatag gcttttagtt tacttttagt
    21541 actaggcaat gagctgcagg cagtactgaa gtacgacaaa gcgaattaac gaagtaataa
    21601 aagaaaaact aaatgacgta ggaaacagaa cgacgacgca agcgtccagt tctcgtttat
    21661 cttttgggca cagtccgtag cccgtattca gttcaaccaa atacggaggc cctagtcctt
    21721 tctattattt atcaaaatta gtataggtcc tattcttccg caattgcttg cggtagctgc
    21781 taggggtggt atggtagtat tgtttgaact ggcggttgaa gttggacagg ttattaaagc
    21841 caacttcggt cgcaatttca agcacaggct tgagagtgtt tgtcaggagc tcggtagctg
    21901 cccgcagtcg gacttggatg ataaattcca tacaggaagt tcctgtttgt tgcttgaaga
    21961 ttgtcataaa atgggttttt gtatagccca tttgctctgc tagctgctcg atggtgagat
    22021 tttctgcata atgttgttgg atgtgttcaa tcaacaaccg cagtttttca tttttccgat
    22081 acatatcatc ggtatttttt cggacgatgt agcggtagcg gtagagcagg tagaagaagt
    22141 caaagagtcg gctcttgaga ggtagctcaa agtaaggcgg ctggtgtctg accaactcaa
    22201 aaatggtgag caggcattgt ctaatctctg cgtagccagg gtcttggggc tggatgcgta
    22261 gaatgcactt aaaaacatct gtctgtaagg gttgcaggta gagcatactg gtatgatcca
    22321 gttgagacgc ccccagcata tccaagtgaa agagaagggt atccgtttcg tgcccccgtt
    22381 gctcaatcgg atggatggaa tgcgcagcat tgggtcggat caggataata tcaccagcct
    22441 gactattgaa ataatcatag tcgatatggt aacgggctgt ccctccgtaa acatagttga
    22501 tttcaaattc attgtgccaa tgaaagagaa tgtcaggaat gccatccatg acacaggtat
    22561 ggtaatactt gtagggtaac agacgactat cgtagtcaat ggtgtgctta aactgtttat
    22621 ccgttaatgg tggttgcata ggttcctcct tttcgtagga tagtatcatt atagcatatt
    22681 atttgagaag aaaagggttt caaatctgtt tatactatat ttgttagaaa aaagataagg
    22741 gagaaattag atgtcacgat ttccaaaaaa tttcctctgg ggaggagcta ttgcagccaa
    22801 ccaggcagag ggtgcctata atgtggacgg acgcggttta gtccagacag acgttacaac
    22861 aggaggaact gtcaacagcc cccgctatac gacttacatt gataaggacg gcaagccagg
    22921 taaatatgct tctatggggc atgctggcgg tcatctgcca gaaggggcga cctatgccgt
    22981 cctagaagac cactattatc caaaccacaa ggctgtggac ttctaccacc gttataaaga
    23041 agatatcaag ctcttcgcaa aaatgggtta ctccgttttc cgcttgtcaa tttcatgggc
    23101 acggattttc ccaaatggtg atgatgcaga gccaaaccaa gcaggtcttg atttctatcg
    23161 ttctgttttt gaagaatgcc gcaaatatgg cattgagcca ttggtttcca tttggcactt
    23221 cgatatacct ttgaacttgg agcaacgcta tggtggttgg accaatcgta agttgattga
    23281 tttctatgtc cgctatgctg agacaatttt taatgaatat aagggtttgg tgaaatactg
    23341 gattaccttc aatgagatta acaacactat catgtttttg gatatgttta gtgaaccaaa
    23401 ggattctgat taccaagatg cctaccaaca cttacatcac caatttgttg cctctgccaa
    23461 ggctgtaaaa ttaggacatc agattgatcc gagctatcga ttcggaaaca tgatttgtgg
    23521 aatcaccttc tacccaggaa cctgtgaccc tgcggatatt ttagaaaatc aacacaaatg
    23581 ggaacagaat attttctatt gtagtgatgc acaagccaaa ggtcgttatg gttcctatgc
    23641 aaacagactg tggaaggaac acaatgttgt attgcaaatg gaagagggag acctagacat
    23701 ccttgctgaa ggtaaggtgg atatgtatac cttctcttat tacatgtcaa cagttgtgac
    23761 cactcataaa gtggaagaca cggtttctgg gaacttctca atcggtgcca agaaccctta
    23821 cttgacctat tcagactggg gatgggccca agatccaact ggactccaat actatcttga
    23881 aaaaatctat gaccgttatg agattccact catggttgta gaaaatggat taggagcttt
    23941 ggatacagtt gaagaagacg gctctattca cgatgattac cgtattgact accatcgtgc
    24001 ccatgtcaat gccatggcag atgccattgc taatggtgtt gatttgattg gctataccac
    24061 ttggggctgt attgacctag tatcagcagg gacaggtgaa atgcgaaaac gctacggctt
    24121 tatctacgtt gatatggatg atgctggaaa tgggtcactt gctagaacac caaaagattc
    24181 attctactgg tacaagaaag tcattgccag caatggtgag gatgtagaat gaggaagacg
    24241 gcagtgtgcc gtttcagatt gaagaagaag tccattttgg acaattttct tcaatctttt
    24301 ttctttatga tgaaaattaa aaactctcag aaacgccgaa atatcaatgt ttctaagagt
    24361 ttaatgactt gctatctttc acaaacttct tcaatttttt atatttttag gagtttgtct
    24421 aggttctgag acggcacttt gccgttttct attagggaaa ggtttgaaaa tgaaaataga
    24481 acatgtagca atctacactc aggatttgga aggtatgcgt aatttctttg aaaactactt
    24541 caatgccaca tccaatcagc tctaccataa tctaaaaacc agtttcaagt cctattttct
    24601 tacctttgaa gacggggctc gtttggaaat tatgaccaga gacgatgtgg tcgacaaacc
    24661 aagtcaactc aattatctag gacttattca tttagccttt agtctaggga gtgaggaagc
    24721 tgtggatgag ttaacagagc gacttgttgc tgcaggctac ttgcttctta atggaccacg
    24781 aataactggg gacggctact atgaaccgtg tgtgttggga tttgatgata tacaaattga
    24841 attaacagtg taatgttggc aagtaatact gctaggtcaa tgtttaacgg attagcttgc
    24901 aagtatcatt cattagcgat ttccttactg ttacggaaaa aactgcaatg gtgattgatg
    24961 taaacgtttg ctaaactaat aactatagga acctgtattc acaagtaggg ggcttgtata
    25021 taagagatgt tttgagggaa tactgactgt attttgaaaa aaactaacaa tgagtagctt
    25081 aaaaattagt cttagatgga aattctgaac tgtaaataca ggttctaaaa tatacaggag
    25141 gcaattatgt ctaaattacc taaaaatttt ttatggggtg gagcagtagc agctcaccaa
    25201 cttgaaggtg gctggcaaga aggtggaaaa gggatttctg tagcagatgt gatgactgct
    25261 gggagacacg gggtacctag agaaattaca gctggcgtat tagaaggaaa atattatccg
    25321 aatcatgaag cgattgattt ctatcatcgt tacaaagagg atattgctct ctttgctgag
    25381 atggggttca agtgtttccg tacctcaatt gcatggacac gtatttttcc aaaaggagac
    25441 gaattagagc caaatgaagc tggtttgcag ttctatgata acttattcga tgagtgttta
    25501 aaatatggga ttgaacctgt tgttacccta tcacactttg agttgcctta tcatctggta
    25561 accgagtatg gtggttttag aaaccgtcag acaattaatt tctttgtccg ttttgctgag
    25621 acctgtttcc gtcgttacaa ggataaggtc aaatactgga tgacctttaa tgagattaat
    25681 aatcaagcaa actatcagga agattttgca ccgtttacta actcaggtat cgtttatcaa
    25741 gaaggtgaaa atcgtgaagc agttatgtat caagcggccc attatgaatt agttgcctct
    25801 gcacgcgctg ttaaaattgg acatgaaatt aatcctgact ttcaaattgg ttgtatgatt
    25861 gccatgtgtc cgatatatcc tgcaacctgt aaaccatcag atattttgat ggcacagaag
    25921 gcgatgcaaa aacggtatta ctttgcagat gttcatgtgc atggtttcta ccctgagcat
    25981 atcttgcgct actgggagag aaaaggtatt agcgttgatt tcacagagga agatcgcgaa
    26041 gatttgctag aaggaacagt tgattacatc ggtttctcat actatatgag ttttgctatt
    26101 gattctcacc gcgagaataa tcctcattac gattatcttg agacagagga cttggtgaaa
    26161 aatacctatg tgaaggcttc tgattgggaa tggcaaattg acccagaagg attgcgctat
    26221 gcattaaact ggtttacaga tatgtatcat ctgccacttt ttatcgtaga gaatggcttt
    26281 ggtgcgattg accaagtcga agaagatgga atggtgcatg atgactaccg tattgattat
    26341 cttggtgctc atatcaaaga atttatcaag gctgtcgatg aggatggagt tgacttgatg
    26401 ggatatacgc cgtggggttg tattgacctg gtgtcagcag ggacaggtga aatgcgcaaa
    26461 cgctacggtt ttatctatgt tgataaagat gatgaaggaa atggtagtta tgcgcgttct
    26521 ccaaaacgct cattcgcatg gtacaaaaat gtcatcacaa caaatggtga ggaagtttaa
    26581 tgagaagacc tctgtagcgt aatagctaca tgggtcttca tttatgttgt tagtattggt
    26641 atattaaagg agaaaattgt atggttggtt ttatcgcagc ttgcttaact acctttggat
    26701 ttgtacctca ggttatcaag gtagttaaga caaaggatac agagtcgatt tcgttaggaa
    26761 tgtatatgat gtctgtggca gggatgtcct tatggttgtt ccatggtatt attcaaggag
    26821 atacggccct cattattgct aatagcctat ctgtaacatt agcaggtatt attttggtct
    26881 ataaattagt ctacaaataa tgcactattc catcgataaa agaattttta gcaacagtga
    26941 aaaacattga aaatgcttga ctttttctgt gaaaggaata taatgatgac aaataaatat
    27001 tggaagtgtg attactatgt tattcgttcc gctttttttt aaggtttaac ctttttaaac
    27061 caccaagata agcgtttttt ctagttgttt gtaagtgtat cgtatcttgg aaaagaggtt
    27121 tattatggaa tctatagttg gaatagttgt cattgtagtt gttacggttg ttctggttta
    27181 tttattaact aatatgtgga aaatcagagc ggcttcagtt ggtcaaacgg atgacactac
    27241 gctatacttt gtaagattta agggggtaaa tccgccagac ttagcaaata gtagtgtttt
    27301 taatcaagta gccaaaatca aatgtgctaa aggagatacc tatcaagtca cttcaacagt
    27361 caatgatgtg aaactgagag acgtgattat ggatgaattt cagctcaaat cttctgaggt
    27421 tgtagtttac tatcctcctc gtcttttctt ttatgcatca tagtcgcaac tcttcggagt
    27481 tgctattttt ttgtttctgg agagtagcgg aaaagcggtt tattttagta gcgaaatttc
    27541 cgtagtggta aggaaatact tcctatggaa aatgtaagcg cgttcatgta aaataaaatc
    27601 ataacaaaag taaataataa aatagttgga ggaaaatcct atggtaaaag ctttgattat
    27661 ctgtgcagga ggcatgtctt cttcacttat tgctaaaaaa acacaaacac ttttggaaga
    27721 acaaggtcat aaagtagaaa tgaacgctgt tggtgttcca gaaggtggta aaaaaattaa
    27781 tgcggcagag tatgacttgt acttaattag cccgcagaca aaaatgcact ttaagcaatt
    27841 tgaagaagca ggtaagaagg ttgggaagcc aattgtccaa atcccaccac aagcttatat
    27901 cccaattccg atgggaattg aaaaaatggc taaattggtc ttggataata tctagttctt
    27961 tgctaccata gatggtatat tgattcgaaa agaggatagt tatgctaagt actaaggaaa
    28021 aaatgatatt gcagtatctt taccaacacc agaatatttt ttcaaccagt aaagtattgg
    28081 cagagcatct ctcttataca gatcgcacaa ttcgaactta tataaaaaaa atggcatccg
    28141 aaatatctga ggaagaaaca ggttttgcga ttttatccaa acaaggttat ggctatcagc
    28201 ttcgaattag cgatgaggaa aaataccatc gtttcttatc tgaaaaccaa ctaatatttg
    28261 gggtggatta tagtgatgca gaaaatcgcc ataaacaaat cctgaataaa ttgatatttg
    28321 aagaagaatg tatcttattt gatgatttgg cggaccagct gtttgtcagt agatcaacct
    28381 tgtctcatga tttcaagcac attagggagc atcttgcttc ttatggtttg agcatcgaga
    28441 gtaagcccta taagggagtc tatgtggttg gtgaagaacg tcaaaaacgt cacttcatca
    28501 tggactattt ctttagtgag catttttatc agaatatcca tcatttttta tccaatgata
    28561 aaagtctagc cttacctcta tcttttgaag agctgacaat tgtagtctta gatgagtgtc
    28621 gtgatagtca gttgaaacta tctgattata ttatccaaaa tttagttatt catttaggtt
    28681 tagctatcca acgctatcaa aaaggtttta taatttctcc tgtcaccatc gataaggaaa
    28741 agtatgctga agaattggca gtagctacaa agattgctag gcgattatcc catcgactgg
    28801 aacctcagaa taggtttcct gaggaagaag tggtctacat tgctctacac ttgatttcaa
    28861 aaacacaatt ggaggtggag aagtcatcgg accgcctctt gttgcgccaa gcactttttg
    28921 aagttttagg gcgttatgat gatgaatatg gttatcaatt ttcacatgat ttttccttga
    28981 tagaaggttt gctaacacat ctggaggttc tcgtagaacg actccgtcac aatctccata
    29041 ttgataaccc cctacttgat gatattaaaa caacttatca tgatatcttc gatttgacac
    29101 aatcactaat ggctgaactt tccgtttttc actcttatag cttgtccgag tcagaaattg
    29161 cctatgtagc tctacacttg atggcttcct tggaacggca aaaagaaaaa tacaaactaa
    29221 atgttctggt tatctgtgca acaggctacg gtagtgctca gatgctgaaa aataggatta
    29281 aaaatgaact tgggcaacag gtgtccatat cagatgtcat cggttactat gatttagata
    29341 atcaaaagtt gcagggggta gatgtgataa tgtcaaccat cgacttatct ggtttggtgt
    29401 ttaaggtccc tgttataact gtcagtgtct ttttaacgga tcaggaagtt aaggaagtta
    29461 aacaacgatt ggcggacttg agacctagtc tccaaaaaac acaggtagtg gaaagagaga
    29521 gtaacttgga gaaatacttt gatcagtact tctcagaaca acgattttta gttgttgagt
    29581 cagctgaaaa agaaatgtta ttaaagcaaa tgatttcaca gttggagagc gaaggtcttg
    29641 gaaatcacca ggaattttat aaattaattg aggcgcgtga aagcttgagt acattggtat
    29701 ttgataaaga tatagctgtt cctcaccccc taaaacccat tagcgaaaag cacatgattt
    29761 ctgttgcggt tataaaaaat ggtctatatt gggaagaagg ctatgggcag attagattgg
    29821 ttttcttagt gagtccatct atatatacaa atgaaggtct atcaaccatt accaatcgat
    29881 tggtagattt ggtagattta ccagaagtca agaaagacat aataaactct cctgattttg
    29941 aaacattcaa acacgttttt ttacaaagag aatagaaggt gacatatgaa tacagaagaa
    30001 ttacaaatgg ctgcatttgg gatcatcctc agtagtggca atgcaagaag tgttatccac
    30061 aaagcttttg ctgctatgag agaaggtgat tatgataagg cagaagagtt attggaagcc
    30121 gccaatgctg acatgcttga agcccaccat tctcaaacgg gtctcctaca ggaatacgca
    30181 agcggtactg aagtgaaggt agagattatt atggttcatg cgcaagatca tttgatgaca
    30241 acaatgactt tacgtgaggt agcgcttgaa atgttagctt tgtatcgtaa agttggttag
    30301 aaagaggata tgggatgagt aagggaatgg caagtaaaaa gctacagaaa acaccagaac
    30361 aattaaaaca agagtctaaa cgcaaaagtc agctctttaa tcgctatatg ctgtttcgtt
    30421 atagtttagc agtgttcttc tttgcaaatc tatactggct tctggttcaa ttatttcaac
    30481 caagtttgta tctaatcctg ccctcgctta tgctgattgc aataatcatt gcgacggcag
    30541 aacaatttaa gttgtatagt gctgaggagt ctcgattgac aaagacagaa tttgtattaa
    30601 gggcacaagc aatcttgcaa gggttaattg tggttttagt gattttgggt catatctcaa
    30661 ccctctttcc aactttttca aatcatatat ctgctaaact ctttgttatt gccttgcagt
    30721 tgttaggtct tgctttagtt gttctcaata taaaaaggtt ggagcaggta aggcaaaata
    30781 cggataaata ctacctacgt tttcaaataa taagaaaata tctttaaaat tttaggaggt
    30841 cttctcatgg aagaacaaaa agggttcttt ggactattag ata
//
LOCUS       DASGCC010000006        29649 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.006, whole genome shotgun sequence.
ACCESSION   DASGCC010000006 DASGCC010000000
VERSION     DASGCC010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 29649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29649
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.006"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            90..1010
                     /locus_tag="U1404_000160"
     CDS             90..1010
                     /locus_tag="U1404_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5347153.1"
                     /translation="MKTSKLQQAGLVDRIKQQKLLLLMLLPGLVLTFIFRYIPMYGVL
                     IAFKDYNPLKGVLGSEWIGFEEFTKFLSSPNFGTLLANTLKLSVYGLLLGFLPPIILA
                     IMLNQLLSDKAKKRIQLVLYAPNFISVVVIVGMIFLFFSVGGPVNSILGMFGIEANFL
                     TDPDFFRPLYILSGIWQVMGWASTLYTATLVNVDPALIEAAKLDGANIFQRIWHIDLP
                     ALKPVMVIQFILAAGGIMNVGYEKAFLMQTSLNLTSSEIISTYVYKIGLVSGDYSYST
                     AVGLFNALINIILLIAVNKIVKRINDGQGL"
     gene            1020..1907
                     /locus_tag="U1404_000161"
     CDS             1020..1907
                     /locus_tag="U1404_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5347154.1"
                     /translation="MNTQMYTKFDKRMLIVNKILLAFLVLITVVPMVYILVASFMDPQ
                     ALVSKGISFNPKDWTVEGYQRVFSDKSILRGFFNSLFYSFSFAFVTVAISVMTAYPLS
                     KKDLVGKKWINAFLVFTMFFGGGLVPTYLLVKDLGMLNTVWAIIIPGAVNVWNIILAR
                     TYFQGLPDELVEAAVMDGANEFQIFWKIMIPLAKPIMFVLFLYAFVGQWNSYFDAMIY
                     IKDPDLEPLQLVLRKILIQSEPAKDMIGAQAAMNEMKRIAEMIKYATIVISSLPLIVM
                     YPFFQKYFDKGIMAGSLKG"
     gene            2107..3717
                     /locus_tag="U1404_000162"
     CDS             2107..3717
                     /locus_tag="U1404_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5347155.1"
                     /translation="MKHKFGKTVVTLLASTVLLAACGSKNTASSPDYELKDVQFPLEK
                     SVTLKFMTASSPLAPADPNDKLIFQRLEEETGVHIDWTNYQSDFGEKRNLDIASGDLP
                     DAIHNDGASDVELMNWAKQGVIVPVEDLIDKHMPNLKKILDENPEYRSMITAPDGHIY
                     SFPWIEELGEGKESIHTVNDIAWINKEWLNKLGLEMPKTTDDLIKVLEAFKTQDPNGN
                     GKADEIPMSFVNGNGGEDFKILFGAFGVGDNDDHIVVNNDGTVDFTADNEDYKEGVEF
                     MRTLQEKGLIDPEAFEQDWNTYLAKGSENLYGVYFTWDKANITGMNETYDILPVLAGP
                     DGTKHITRTNGMGFQRDRMVITSANKNLELTAKWIDAQYKPIQSVQNNWGTYGDETQQ
                     NIFEYDAATDSLKHLPLNGTAPGELRQKTEVGGPLAILDEYYGTVTTMPDDAKWRLDL
                     MHATYLDYVTNNDIYPRVFMEQEDLDKIAQVEADMNDFIYRKRAEWIVNGGIEEEWDS
                     YLKELESYGLSDWLAIKQKYYDQYKENQ"
     gene            3735..5093
                     /locus_tag="U1404_000163"
     CDS             3735..5093
                     /locus_tag="U1404_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HEM5347156.1"
                     /translation="MKTVVEANQFIQTEKGNVNPIFKPQAHLTPETGWINDPNGFIYF
                     RGEYHLFYQFNPYESVWGPMHWGHAKSKDLVNWEQLPVALAPDKAYDKDGCFSGSAIV
                     KDDVLWLMYTGHINNEDGTVSQVQNMAFSTDGIHFEKIEQNPVATADGLPEEVIANDF
                     RDPKIFEKDGHYYSVVATKHKDNVGCIVLLSSPNLTDWKFESIFLKGEANQGFVWECP
                     DYFEVDGQEYLIISPMRYQKDGNDFININSNIFVTGHVDWDKKVFVAESFKEIDHGHD
                     FYAAQTTEGPEGERVMIAWMHTWGRPLVTNDLGHKWYGQMTLPRLLKQGENGLRQVLP
                     AGILNSFDDIEIGQVIQGPSKLSLKLGDSLDLKLGTDQDYLQFGYDKAKQEVYIDRSS
                     LKIQQVGEEEWSTVRRAVTVQATELEVLVDTNCLEIFINDGQETLTSTFYVEGQIILN
                     AL"
     gene            5219..7588
                     /locus_tag="U1404_000164"
     CDS             5219..7588
                     /locus_tag="U1404_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM5347157.1"
                     /translation="MRKTSKKGKATRRPTKAELAQQERVKNITLRVLGLLFIAFAASR
                     LGVFGVTSYNIFRLLFGSLAYLLLAGAFIYLLIPKVLREREGTISGFWLIVIGLLIEF
                     QAYLDWTYQGSDLFGHTLKLALSDLAKFQVTAFLGGGMIGSIFYLPVSFLFANVGSFF
                     IGLLVIAFGIFFVSPWSVYDVADGLAVAKDKLVETQVKRAELRTQKKAEREEKRQQEL
                     ARLEEERLRLEEEEESARALALVDRHVDLETGEILEEEPVQVPIISEYDHLDIEDEFP
                     IMLAEDDQPAQSNSASQASESNEFEKDETDVQIDFKPKQRLAYKLPSIDLFAPIKAKS
                     QSNEKRIVRQNIKVLEDTFASFGIKVVVERAEIGPSVTKYEVKPAVGVRVNRISNLAD
                     DLALALAAKDVRIEAPIPGKSLVGIEVPNSEVATVPFRELWEQSKTDPDKLLEIPLGK
                     AVNGSVRSFNLARMPHLLVAGSTGSGKSVAVNGIISSILMKAGPDQVKFMMIDPKMVE
                     LSVYNDIPHLLIPVVTNPRKAARALQKVVDEMEKRYELFSQIGVRNLEGYNAKVEEFN
                     SRSEEKQIPLPLIVVIVDELADLMMVASKEVEDAIIRLGQKARAAGIHMILATQRPSV
                     DVISGLIKANVPSRIAFAVSSGTDSRTILDENGAEKLLGRGDMLFKPIDENHPVRLQG
                     SFISDDDVEAIVGFIKDQADADYDESFDPGEVAEGDGDAGFGDAGGDPLFNEARALVV
                     ETQKASASMIQRRLSVGFNRATRLMEELEAAGVIGPAEGTKPRKVLETQ"
     gene            7588..7974
                     /locus_tag="U1404_000165"
     CDS             7588..7974
                     /locus_tag="U1404_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002931159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5347158.1"
                     /translation="MKFDAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDIL
                     FNVKKGNLILEIFIKPDAPMRPVMPNPEHTGLRHLAFQVADVEACLEEFDRLDIRHEV
                     LRTDDFDGKKMAFFFDPDGLPLEIHE"
     gene            complement(8343..8711)
                     /locus_tag="U1404_000166"
     CDS             complement(8343..8711)
                     /locus_tag="U1404_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 domain-containing protein"
                     /protein_id="HEM5347159.1"
                     /translation="MFESIIFLKIVAFLFIFLTLAISIIAVKFFRLQNRGWNFADIAF
                     PLYAIEFYLISDKAYYNSLLPQLVLALSLLAIGLCGFFLLKKKNFLYRRFFKVFWRAS
                     FILTFLMYLALVIAVFTLKS"
     gene            8866..9291
                     /gene="rplK"
                     /locus_tag="U1404_000167"
     CDS             8866..9291
                     /gene="rplK"
                     /locus_tag="U1404_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004226069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEM5347160.1"
                     /translation="MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNA
                     RTADQAGMIIPVVISVYEDKSFTFITKTPPAAVLLKKAAGVEKGSGTPNKTKVATVTR
                     AQVQEIAETKMPDLNAASLEAAMRMIEGTARSMGFTVTD"
     gene            9332..10021
                     /gene="rplA"
                     /locus_tag="U1404_000168"
     CDS             9332..10021
                     /gene="rplA"
                     /locus_tag="U1404_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEM5347161.1"
                     /translation="MAKKSKNLRAALEKIDSTKLYSVEEAVALAKETNFAKFDASVEV
                     AYNLNIDVRKADQQIRGAMVLPNGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVA
                     KINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGK
                     ITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVSITTTQ
                     GVGIKVDPNSL"
     gene            10126..10416
                     /locus_tag="U1404_000169"
     CDS             10126..10416
                     /locus_tag="U1404_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347162.1"
                     /translation="MKVAEKEELYKYLSAAYNLPQEAFSEALREKILEVAGQLDKEEN
                     LYILAGHLSRFINAELTALTCRAPKELVQLAHYLQEVQNHYRYASLFPGKVK"
     gene            10425..11213
                     /gene="yghU"
                     /locus_tag="U1404_000170"
     CDS             10425..11213
                     /gene="yghU"
                     /locus_tag="U1404_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HEM5347163.1"
                     /translation="MTEYTKPLVWKWEDENDNRSGNRPTAGSRFEQDLPKGEKSFQVY
                     SLGTPNGIKVAIMLEELKELGISEADYDLFLINIGQGDQFGSDFVAINPNSKIPAMVD
                     YSEQEPISVFESANILLYLAEKFDAFLPKTWAERTEVLNWLFWQTGAAPFVGGGFGHF
                     FHYAPTAQEYPINRYTMETKRQLDLLDKLLATREYIAGNTYTIADIAIWSWYGRLVQG
                     ELYPGSAEFLDVDSYKHLKTWVEKIAQRPAVQRGLTVKYHSIDN"
     gene            11468..13108
                     /locus_tag="U1404_000171"
     CDS             11468..13108
                     /locus_tag="U1404_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM5347164.1"
                     /translation="MSEKVEMQQSKEQATVARGLAWLTAGNILSRLLGVAYVIPWYIW
                     LGEYRAEANALFSMGYQIYANFLLISTAGLPTAIAKQVAKYNILGKEEVSLYLVREFF
                     KLMLVFGAVFAGVMYLSAPWLADASGSKEKLLPVMYSLVPPLFIFPAMSILRGFFQGR
                     HDMKPYAISQLAEQLVRVIWILAATFMIMKLGSGDYLEAVVQSTFAAFVGMIASVGIL
                     VYTLWKQGYLGKLLHAKKQKISLDTGQLIKETVRDAIPIIILGLTLQLLQFIDQVTFI
                     RVMERITDYSNSELLELYSYMAANPSKITMMIIGISLSLGSVAIPLITEKFVKKDLKA
                     ASHLVADNLQLLFIFTIPAIVGTVLLAGPLYTIFYGPSDPIAITLFIWNLFLILPLGL
                     YSVISVVIQAIFENRRAIYYFLIGMLVKIVLQVPMIYVFKVYGSFISTIFGLGIMLYL
                     FYRRIDKVLHIDERLVIKDIATISWISIVMGLIVWGIEFVLNLILPANGYVSSFIHLA
                     VAGGAGMLVFVILTLKTRQLDRLIGSRAQSLRRKLRLG"
     gene            13275..14009
                     /locus_tag="U1404_000172"
     CDS             13275..14009
                     /locus_tag="U1404_000172"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEM5347165.1"
                     /translation="MMKPKYERILIKLSGEALAGERGVGIDLKTVQEMAKEIQEVAES
                     GIQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLKQLGVDTRVQ
                     TAIAMQSVAEPYIRGRALRHLEKGRIVIFGAGIGSPYFSTDTTAALRAAEIEADAILM
                     AKNGVDGVYNADPKKDANAVKFNELTHREVISRGLKIMDATASTLSMDNDIDLVVFNM
                     NEPGNIKRVVFGEPIGTTVSNSSEEK"
     gene            14144..14701
                     /gene="frr"
                     /locus_tag="U1404_000173"
     CDS             14144..14701
                     /gene="frr"
                     /locus_tag="U1404_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006148672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEM5347166.1"
                     /translation="MSKEIIAKAQDRMNQSHQSLAREFSHIRAGRANASLLDRISVEY
                     YGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVI
                     PALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDI
                     QKVTDDAIKTIDKMTADKEKELLEV"
     gene            14833..15687
                     /gene="cvfB"
                     /locus_tag="U1404_000174"
     CDS             14833..15687
                     /gene="cvfB"
                     /locus_tag="U1404_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding virulence regulatory protein CvfB"
                     /protein_id="HEM5347167.1"
                     /translation="MNDLLAQYIVGLVTDENDQFYFVQKEGRTFALSKDEGEHSLGQS
                     VKGFAYTDMKQKLRLTTKEVGVSRTSFGWGTVTEVRKDLGVFVDTGLPDKQVVVSLDI
                     LPEIKELWPKKGDQLYVKLDVDKKDRIWALPAFQEDFQKMARPAYDNMQNQNLRAIVY
                     RLKMNGTFVYLPDNNMLGFIHPSERFAEPRLGQVLEARVIGYRAVDRTLNLSLKPRSF
                     EMLENDAQMILTYLESNGGFMTLNDKSAPEDIKATFGISKGQFKKALGGLMKAGKIKQ
                     DSFGTELV"
     gene            15697..16617
                     /locus_tag="U1404_000175"
     CDS             15697..16617
                     /locus_tag="U1404_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEM5347168.1"
                     /translation="MLVYIAGSGAMGCRFGYQLSKTNHEVILLDNWEEHIETILENGL
                     KVTGDVEETVYLHIMKPTEATREADFIILLTKADQLPKMLRDIKPIIGPTTKVLSLLN
                     GLGHATTMRRYVPDESIMVGVTMWLAGLKGPGHAHLEGPGSMSVQHILGDEQSVADII
                     EMLNEAGLNVTYDNHVVSAIWQKACVNGVMNPTCTILDCTIGELFGTEAGLNLVQGIF
                     KEFIAVAKSEADGIDEEAIWKYVIDASKKASNHYPSMHQDLVQHGRKTEIDYLNGAVV
                     FKGKRAGIPTPYCQMITDMIHAKESMLGLR"
     gene            16627..17082
                     /locus_tag="U1404_000176"
     CDS             16627..17082
                     /locus_tag="U1404_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEM5347169.1"
                     /translation="MLIEVETIEEYMAALPENRKEAVGRLHQVIVEQLPAGFEVGILG
                     GMINYYVPLTAYPDGYHCTPGEPLPFLALASQKAHIALYHMGIYMDQELNDWFVAAYQ
                     AQVPTKLDMGKSCVRMKNPKNIPYELIGELVSKMSMERYIELYEKNHRK"
     gene            17088..17303
                     /locus_tag="U1404_000177"
     CDS             17088..17303
                     /locus_tag="U1404_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HEM5347170.1"
                     /translation="MRRSFYSWLMTQRNPKSNEPVAILADYAFDESDFPKQSDNFDEV
                     SRFLEESASFAFSMSDFDAIWEDYLGH"
     gene            17382..18404
                     /locus_tag="U1404_000178"
     CDS             17382..18404
                     /locus_tag="U1404_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEM5347171.1"
                     /translation="MLEHSIDIQLKHPDDSFSLFGSNERHLRLMEQELGVVIHARTEK
                     VQVIGQEEHVEQARLVIQSLLVLVSRGLVINTPDVVTAISMAKNDEIEKFVALYEEEI
                     IKDNYGKPIRVKTLGQKLYVDSVKRHDIVFGIGPAGTGKTFLAVTLAVTALKRGQVKR
                     IVLTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYQILGKEQTTRLMEREIIEIAP
                     LAYMRGRTLEDAFVILDEAQNTTIMQMKMFLTRLGFNSKMIVNGDISQIDLPRKVKSG
                     LIDATEKLSKIPQIDFVHFSAKDVVRHPVVAQIINAYEEEARAADSRASFETIGEPSR
                     KYNGEE"
     gene            complement(19074..20222)
                     /locus_tag="U1404_000179"
     CDS             complement(19074..20222)
                     /locus_tag="U1404_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine methyltransferase"
                     /protein_id="HEM5347172.1"
                     /translation="MTTSRFQLVGSLLRPANLGEFKRQIEAREDIKYPFYDDFDGYKE
                     TEASLIQKIVAEQKENGLDIVTDGEFGRSMWHLDFLWGFDGIERYIAEHGYPFKDHDG
                     QIFETRKDIGLRITAPLSAKNHHFIDIFKQVKELAGETVTKQTIFGPAHAFNELTIFN
                     GQVGPNQVYKTHDELKAGLIAAYKEFLDQYKEAGGQIVQFDDCLWELFDPANPVPFLP
                     QDDSEALAALADEFVAINNAVIDYGHEIGLTVWRHNCRGNYESRSAAGGTYEAIAKKF
                     LRDQKYDRFFLEWDDERAGDLKALESLRDKNVEVVLGLLSSKTSDLDDEERVYKLLEE
                     ASKIIPKERLYLSHQCGFASCDSGNELAIPQQWAKIKQGQEIADKFWS"
     gene            20421..21587
                     /locus_tag="U1404_000180"
     CDS             20421..21587
                     /locus_tag="U1404_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5347173.1"
                     /translation="MKKQSPFIIAGIVMLGVVMRAPFTALPAILTDVAAGLGVEVSSL
                     GILTSIPLIMFALCSSLAPRLAAKFGMEKLMALVLLVMVLGSGIRVLNLPALYIGTML
                     VGATIAFINVLLPSLVAANFPKKIGLYTTIYITLMGVAATVASMIAVPIVSSSSWEFF
                     ILLITGLVFMAFLIWLPNVRNNHRFASENQGNQKSSIWKNKAAIAFLIFGGLQSVLYY
                     TEITWLPTISQSVGFSKAEAGLMAGFFNMTAIPMSMIIPAVLSRQTKEMRRNIMLAIS
                     SVTLLGLVMMVLIPTNLILWSALHIILSFSNAALFPYMMLSFTLKTSNSQATAQLSGM
                     VQTGGYLIAAFGPGLLGYSYPIFGNWMPLILALAIVTLAMMWTIVLIEKEDIIL"
     gene            complement(21686..21856)
                     /locus_tag="U1404_000181"
     CDS             complement(21686..21856)
                     /locus_tag="U1404_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003002781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3042 family protein"
                     /protein_id="HEM5347174.1"
                     /translation="MAKGFGKGFLTGVLSTVALAAGAVFTVHKTIIEPEEKKEAFIEE
                     NRKKAARRRVAH"
     gene            21925..22809
                     /gene="miaA"
                     /locus_tag="U1404_000182"
     CDS             21925..22809
                     /gene="miaA"
                     /locus_tag="U1404_000182"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEM5347175.1"
                     /translation="MKTKVIVVIGPTAVGKTALGIDLAQRYNGEIISGDSQQVYRKLD
                     IGTAKASPEEQAAAVHHLIDVRDVTEGYSAYEFVAEAKALIADITSRGKLPIIVGGTG
                     LYIQSLLEGYHLGGQVDQVQVLAYRAELDSLSDEDLETMAEQAGLMVEGNSRRRIIRG
                     LELKKFGENLENTESGYEPLYICLTDDRQVLYDRINQRVDKMMAAGLLDEVSWLYQEH
                     PQAQAAMGIGYKEFFPYLAGAISLEEAIDKVKQNSRRFAKRQLTWFRNRMQVPFYSVG
                     EPDCKSQIFTAVEEFLND"
     gene            22802..24052
                     /gene="hflX"
                     /locus_tag="U1404_000183"
     CDS             22802..24052
                     /gene="hflX"
                     /locus_tag="U1404_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM5347176.1"
                     /translation="MIETQKEQERALLVGVELQQTDNFDMSMEELASLAKTAGALVKG
                     VYTQKREKYDSKTFVGSGKLDEIAQMVEADEIDTVIVNNRLTPRQNVNLEEILGVKVI
                     DRMQLILDIFAMRARSHEGKLQVHLAQLKYMLPRLVGQGIMLSRQAGGIGSRGPGESQ
                     LELNRRSIRNQIHDIERQLKTVEKNRATVRERRLQSGVFKIGLIGYTNAGKSTIMNVM
                     TDKRQYEADELFATLDATTKQINLADKFNVTLTDTVGFIQDLPTELISAFKSTLEESM
                     NVDLLLHIIDASDPNHSEQEQVVLDILKDLDMLDIPRLALYNKLDKTDDSFTPSQFPH
                     VMLSAKDENAKGHIQMMVLAKIKTMFERFEVRVPLAESYKLHDLATLALIENRTYEED
                     VEVVSGYIASANKWKLEEFYDGLS"
     gene            24036..24665
                     /locus_tag="U1404_000184"
     CDS             24036..24665
                     /locus_tag="U1404_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEM5347177.1"
                     /translation="MTDYLDLAMKYGGFTSLDKVYLANKLAGLTDQQKLDFITPPPSV
                     INAYFAEIYQKQGAEEATDYYLTLSQQLCLFPKEPSFAESKPFVRLNLSGKSFGFTYV
                     SADGLAQVFSEGVEEVTESLLFEIAQVFPHYVVFVEEGKIFMKVNPFEDAELEDVETD
                     YLLTQVATTEGLVKISGFNQEEVLEVADGYAGQYYYVWSGRSAILYIKH"
     gene            24676..25605
                     /locus_tag="U1404_000185"
     CDS             24676..25605
                     /locus_tag="U1404_000185"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEM5347178.1"
                     /translation="MQIQFLGTGAGQPSKARNVSSLALKLLDEINQVWLFDCGEGTQN
                     QILETTIRPRKVAKIFITHLHGDHIFGLPGFLSSRSFQSSDEQTDIDIYGPVGIRSFV
                     LASLKVSGTRLPYRIHFHEFDVDTVGQVLETDKFTVFAEKLDHTIPCVGYRVIQKDLE
                     GTLDAEALRAAGVPFGPLFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTR
                     KCHASVRLAVNADVLVHEATYGKGDEKIARKHGHSTNMEAAQVAKDAGVKQLLLNHIS
                     PRFLSKDISQLRKDASTIFEQVHIVKDLEEIEL"
     gene            25602..26357
                     /locus_tag="U1404_000186"
     CDS             25602..26357
                     /locus_tag="U1404_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM5347179.1"
                     /translation="MRTILITGASGGLVQEMVPLLKDDFLILLGRDVAKIEQLYVHHE
                     KKAVFDVDIRDEMALTAFFDELDSQFGQIDILVNNAGYAIYDDFENFSSQQVQDMFDI
                     NTFALMTMCRLVGKRMKVRRSGQIINIISMSGLIASAKSSVYSATKFAAMGFSNTIRL
                     ELAQYGVTVTTVNPGPIATGFFGQADPDGSYQESVKAFLLQPDYVAKKIVSAMGTKKR
                     DINLPWSLAAAHKLYTLFPRIADYLASTVFNLK"
     gene            complement(26395..29580)
                     /locus_tag="U1404_000187"
     CDS             complement(26395..29580)
                     /locus_tag="U1404_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5347180.1"
                     /translation="MKLSYKKRLLNQVLLASTVLFATSLAQGTVFANTEEIPPTTSET
                     VTPLPEETPITKTSTSEATDNLVEGKETEKQTEEIADTSPALVSTEEETTSSEPNAEE
                     TTLRSANNDNQDTTEEKSAVPTIDTVTLETKTVYLSEAVTITESVTLPDTTEKIEWTL
                     DGKPISEWKTWNLKEGDFTGDTFITVEESRQDNQLHLNIQLAALFGEDLSKRTPSNIR
                     RTYRHFIKDMLLEGTSADGNLIISKTLHFRPYEAYRTHEEMLTEMEETKNNAATDRLV
                     RIESIGQSAEGRDIKMAVVAKDQASIDKYLTETTPLMLTQPDQMLKQLQAGTFDYKLP
                     ILINNTHADEQPGIDVVTSLFKEFAQKDTITFPSTDADGNPVTLHLKVTDLLDKFIFL
                     FNFTENPDGDVKNLRSLVNGLDPNRDTGFQVNPETQAIVRQIHKWNPISVLDIHGFVS
                     GFLIEPATPPHDPNFEYDLLADIMLEKAHEMGRAGIANSKYERYTIPKVHWGDGWDDS
                     FSGYTAVYAMYHGILGHTIEIPEGNQESFKAGFFAVLGGVHNMATKPDSLMEMRLKYY
                     SRGVNKVEDPKAESELVGPDGAVVGRVKKDQPKFFPDYYVIPMTLDKHNDMQEAFKMI
                     EYFNRNGVVVKELTEDVGNFRKGDLVVDMAQAKRGFANHVLYAGSDESAWGAMYAELV
                     VNFPDMKGFSAKAVFEENAFSSKLGSITWTKAPRTTEIDFKAPYYVVTNTSESAVQAI
                     NQAIKSGAKVYLTDDGYILETNQFSHLLDTYALYGEPLYKKPIGQELKAMKVYAPSHS
                     YSWAGDFAILANAALAVERMGFEIVNSADEADAIILESDQFDASVFGKKPIIIVGGVA
                     MQKLEELGILAGFNAEQFTDGGDYEGLMRAIIDDKDPLTSGYAMNGLFYSNSGNWIEG
                     IPEGFKTLVKIADKDYYIAGWWPGHDKLANKIVAIAGNYQDQPVFIYAGNPTNKVHPV
                     HFFRWVSNALFGSQLATLEDLPAVEILVPQPEMPKNILDEAPKNTTVVHTTKSTEAKQ
                     LPQTGEKTNYIAIALGSLLLGSIALRRKERS"
BASE COUNT         8520 a         5828 c         6681 g         8620 t
ORIGIN      
        1 ttttacaaga aaaatgaaac gtttcaaaaa gaggttcaca tcctctttct aaaatcaata
       61 aatttgaaac gtttcaaaaa ggagttctta tgaaaacatc aaaactgcaa caagctgggc
      121 tcgtggatcg aatcaagcaa caaaaactct tgttactgat gttactacca ggcttggtct
      181 tgactttcat cttccgttac attcctatgt acggagtact gattgccttt aaagactata
      241 atcctttaaa aggggtgctt ggtagtgagt ggattgggtt tgaagagttt accaagtttc
      301 tttcctctcc aaatttcggc accttacttg ccaacacctt gaaattgagt gtctacggtc
      361 tgctcttagg atttcttcca ccaattattt tggccatcat gctcaatcaa ctattgagcg
      421 ataaggctaa aaaacggatt cagttggtgc tctacgctcc aaactttatc tcagtcgttg
      481 tcatcgtcgg tatgattttc ctcttcttct cagtaggagg accggttaat tccatcctag
      541 gtatgtttgg cattgaagcc aacttcctga cagacccaga cttcttcaga cccctctaca
      601 tcctcagtgg tatttggcag gtaatgggct gggcatcgac tctttacacg gctaccttgg
      661 tcaatgttga tccagccttg attgaagcgg ctaagctaga cggtgcaaat attttccaac
      721 gaatctggca tattgactta ccagcactaa aaccagttat ggtcattcag tttatcttag
      781 cagctggagg tatcatgaac gtggggtacg aaaaagcctt cttgatgcag acctccctca
      841 acctaaccag ttctgaaatc atttcaacct atgtctataa aatcggtttg gtgtcaggtg
      901 actactctta ttcaacagcg gttggcttat ttaacgcact tatcaatatt atcctgctga
      961 ttgcagttaa taagattgtc aaacgcatta acgacggaca aggcttatag gaggttcgta
     1021 tgaatacaca aatgtacaca aaatttgaca agcgaatgct gattgtcaat aaaatcttgc
     1081 tggcatttct tgttctcata acagttgtgc ctatggtcta tatcctagtc gcttccttca
     1141 tggatccgca ggctttggtc agcaagggca ttagctttaa tccaaaggac tggacagtag
     1201 aaggttatca acgggtattt tcagacaagt ctatcctacg cggatttttc aactccctct
     1261 tttattcctt ctcctttgcc ttcgtgaccg tggctatctc agtcatgact gcctacccgc
     1321 tctctaaaaa agatttggtc gggaaaaaat ggattaatgc ctttctcgtt ttcaccatgt
     1381 tcttcggtgg cggacttgtt ccgacctatc tcttggttaa agatttggga atgttgaata
     1441 ctgtctgggc cattattatt cctggtgcag tcaatgtgtg gaatatcatc ttggcacgga
     1501 cctatttcca aggcttgcca gatgagttgg tagaagcagc ggttatggac ggtgccaatg
     1561 aatttcagat tttctggaaa atcatgattc cattagctaa gccaatcatg tttgtacttt
     1621 tcctatatgc ctttgtcggt caatggaatt cttactttga tgccatgatt tacatcaagg
     1681 acccagactt ggagccactc caacttgtgc tacgtaaaat cctcattcaa agcgagcctg
     1741 ctaaggacat gattggtgcc caggctgcca tgaatgaaat gaaacgaatc gcagaaatga
     1801 tcaagtatgc gaccattgtc atctctagct tgccactcat tgtcatgtat ccattcttcc
     1861 agaaatactt tgacaagggg atcatggctg gttcattaaa aggttaataa atatctttca
     1921 ttttctcttt tcttacgtcg acgaaagagg aaacttcgtt tccttatctc cagcttcaaa
     1981 taatcatgta ttatttgaac tcgctatgcc gtacttcagt acagccttca gctcgttgcc
     2041 tagtaataaa aggaaactga aagatattct aaaaaatcaa tttacaaata taggaggttg
     2101 tttctgatga aacacaaatt tggaaaaaca gttgttacgc ttctagcaag taccgtttta
     2161 ttggctgctt gtggctcaaa aaatactgct tcaagcccag attatgaatt gaaagatgtt
     2221 caattcccgc ttgaaaaatc agttacgctt aagtttatga cagctagctc ccccctagct
     2281 ccagcagacc caaatgataa gttgattttc caacgtcttg aggaagaaac aggtgtgcat
     2341 atcgattgga caaactacca gtcagacttt ggtgaaaagc ggaacttgga cattgcttca
     2401 ggtgatttgc cagatgccat ccataacgac ggggcttctg atgtggaatt gatgaactgg
     2461 gcaaaacaag gggttatcgt accagttgaa gacttgattg ataagcatat gccaaacctt
     2521 aagaaaattt tggatgaaaa tccagaatac cgttcaatga ttacggctcc agacggccat
     2581 atctactcat tcccatggat tgaagaattg ggcgaaggta aggaatcaat ccacactgtt
     2641 aacgatattg cttggatcaa caaagaatgg ttgaacaaac tcggtcttga aatgccaaaa
     2701 acaacggatg acttgattaa ggtccttgaa gccttcaaga cccaagatcc aaacggaaat
     2761 ggcaaggcgg atgaaatccc aatgtccttt gtcaacggta acggcggcga agacttcaag
     2821 attctctttg gtgccttcgg tgtcggtgac aacgatgacc atatcgtcgt aaacaatgac
     2881 gggaccgttg actttacagc ggacaatgaa gattacaaag aaggtgttga gttcatgcgt
     2941 acccttcaag aaaaaggcct cattgaccca gaagcctttg agcaagactg gaatacctac
     3001 ttggcaaaag gaagtgaaaa cctctatggt gtgtacttca catgggacaa ggccaacatc
     3061 actggtatga atgagaccta tgacatcttg ccagtattgg caggtcctga tggaaccaag
     3121 catatcactc gtacaaacgg tatgggcttc caacgtgacc gcatggtcat cacatcagct
     3181 aataaaaact tggaattgac tgctaaatgg attgatgccc aatacaaacc aatccagtct
     3241 gttcaaaaca actggggtac ctatggtgat gaaacccaac aaaacatctt cgaatatgat
     3301 gcagctacag atagcttgaa acacttgccg ttgaacggta ctgcaccggg cgaattgcgt
     3361 cagaagacag aagttggtgg accactggct attcttgatg aatactatgg tactgtaaca
     3421 accatgccag acgatgcgaa atggcgtttg gacttgatgc acgcaaccta tcttgactat
     3481 gtgaccaaca atgacatcta ccctcgtgtc ttcatggaac aagaagattt ggacaagatt
     3541 gcccaagttg aagcagatat gaacgatttc atctaccgta aacgtgcaga atggattgta
     3601 aacggcggta tcgaagaaga gtgggatagc tacttgaaag aattggaaag ctatggtctt
     3661 tctgactggt tagctatcaa gcaaaaatac tacgatcagt ataaagaaaa tcagtaatca
     3721 aaaggaggct gcctgtgaaa acagtagtag aagccaatca atttattcag acagaaaaag
     3781 gaaacgtcaa tccgattttc aaaccgcaag cccatttaac accagaaaca ggctggataa
     3841 acgaccccaa tggatttatc tacttccgtg gagaatacca tttgttctac caattcaacc
     3901 cttacgaaag tgtttggggg ccgatgcact ggggtcatgc gaaaagtaag gacttggtca
     3961 actgggaaca gcttccagtt gccctagctc ctgataaagc ttacgataaa gacggctgtt
     4021 tctcgggctc tgccattgtc aaagatgatg ttctatggct catgtatacc ggtcatatca
     4081 acaatgaaga cgggacagtt agccaagttc agaacatggc cttctcaact gacggtattc
     4141 actttgaaaa aatcgagcag aatccagtcg caacagcaga tggactgcca gaagaagtga
     4201 ttgccaatga cttccgcgat ccgaagattt ttgagaaaga tggtcactac tactctgttg
     4261 tcgcaaccaa gcacaaggat aatgtcggct gtatcgtctt actcagctct cccaacctga
     4321 cggattggaa atttgagtct atcttcttga aaggtgaggc caaccaaggc tttgtctggg
     4381 aatgtcctga ctactttgaa gtggacggtc aagagtacct gattatctct ccaatgcgtt
     4441 accaaaaaga cgggaatgac tttatcaata tcaactccaa tatctttgtg acgggtcatg
     4501 tggactggga caagaaagtc tttgtagcag aatccttcaa ggaaatcgac catgggcatg
     4561 atttctatgc agctcaaacg actgaaggtc cagaagggga acgtgtcatg attgcctgga
     4621 tgcatacatg gggacgtccg cttgtaacca atgacttggg acataagtgg tatggtcaaa
     4681 tgaccctgcc tcgtctactt aagcaaggtg agaatggact cagacaggtc ttgccagcag
     4741 gtatcttgaa cagctttgac gacattgaaa tcggtcaagt tatccaaggt ccaagcaagc
     4801 tctctcttaa actgggcgac agtctagact tgaaactggg tactgaccaa gactatcttc
     4861 aatttggcta tgataaggcc aaacaagaag tctatatcga ccgtagctct ctcaaaatcc
     4921 agcaagttgg tgaggaggaa tggtcaactg ttcgtcgagc ggtcacggtt caagcgacag
     4981 agctagaggt cttggttgac accaactgtt tggaaatctt tattaacgat ggtcaagaaa
     5041 ccttgacatc aaccttctac gtagaaggtc agattattct aaacgctcta taatattatt
     5101 tgccctctta aattattctt tcactccaag agaaaccctg tatttgcagg gttttttcta
     5161 tcatgaaaat tcttcccgat tatgataaaa taaagagatt gagaaagttg aggtatctat
     5221 gagaaagaca agtaaaaaag gaaaggctac gaggcgacca accaaggcag aattagcaca
     5281 gcaagaacgt gttaaaaata tcacccttcg agtattggga cttttattca ttgcctttgc
     5341 agccagtcgc ctaggtgtgt ttggagtgac cagctacaat attttccggc tattatttgg
     5401 tagtctggcc tatctattat tggcgggtgc atttatctac cttcttattc ccaaagtctt
     5461 acgcgaaaga gaagggacca tatcgggctt ctggctgatt gttatcgggt tattgattga
     5521 atttcaggct tacttagact ggacctatca agggagtgac ttattcggtc atactctaaa
     5581 attggccttg tcagacctag ctaagtttca ggtaacagca tttctaggcg gagggatgat
     5641 tggaagtatc ttctatctgc cagtctcctt cctctttgca aatgtcggtt ccttcttcat
     5701 cggtcttcta gtgatagcat ttggtatctt ttttgtaagc ccatggtctg tttatgatgt
     5761 tgccgatggc ttggcggttg ccaaagataa gttggtggag acacaggtaa aaagagcaga
     5821 gcttcgaaca cagaagaagg ctgaacgaga agaaaaacgt cagcaagaat tagctcgtct
     5881 agaagaggaa cgccttcgtc tagaggaaga ggaagagtca gctcgggctt tggcactggt
     5941 agataggcat gtcgatttag agacgggtga aatcctcgaa gaagagcctg ttcaagtacc
     6001 gattatttca gaatatgacc acttagacat agaagatgaa tttcctatta tgttggcaga
     6061 agatgaccaa ccagcacaat caaactcggc aagccaggct tctgaatcaa atgagtttga
     6121 gaaggacgag acagatgtgc agattgattt caagcctaag cagagactag catataaact
     6181 tccgtctata gacttatttg ctcctataaa agctaagagt cagtccaatg aaaaacgaat
     6241 tgttcgtcag aatattaaag ttttagaaga cacctttgcc agttttggaa tcaaggtagt
     6301 agttgagcgt gctgagattg gaccatcggt aaccaagtat gaagtcaaac cagcagtcgg
     6361 cgttcgtgtc aatcggattt ctaacctagc tgatgatttg gctctagccc ttgcggctaa
     6421 agatgtccgt attgaagctc ctatcccagg aaaatcactg gtcggtattg aagttccaaa
     6481 ctccgaagtg gctacagtac ctttccgtga gctctgggaa caatctaaaa cagacccaga
     6541 caagcttttg gaaattcctc tcggtaaggc tgtcaatggt tccgtccgtt cctttaacct
     6601 agcacgtatg ccccatctat tggtggctgg ttcaactggt tcagggaagt ctgttgctgt
     6661 caacggtatc atctcttcaa ttctcatgaa agctggtcca gaccaagtta agttcatgat
     6721 gattgacccc aaaatggtcg agttatcggt ctataatgat attccccacc tattgattcc
     6781 cgttgtgacc aacccgcgca aggctgctcg agctcttcaa aaagtagtgg atgaaatgga
     6841 gaaacgctat gagttgttta gccaaattgg tgtccgaaac ttggaaggtt ataatgcgaa
     6901 ggtcgaagaa tttaatagcc gttcagaaga aaaacagatt ccacttcctc tcattgtggt
     6961 aatcgtagat gagttggcag acttgatgat ggtagccagc aaggaagtgg aagatgccat
     7021 tattcgcttg ggacagaagg ctcgtgcagc aggtatccac atgattcttg ctacccagcg
     7081 accatctgtt gatgttattt caggtttgat taaagctaat gtaccatctc gtatcgcctt
     7141 tgccgtatca agcggtacag acagtcggac gattctagat gaaaacggtg ctgaaaaact
     7201 cttaggccgc ggtgacatgc tctttaaacc gattgatgag aaccatccag tccgcttgca
     7261 aggttcattt atatccgatg atgatgtaga agcaatagtt ggctttatca aggatcaggc
     7321 agatgcagat tatgatgaat cctttgatcc aggtgaagtg gcagaaggtg atggcgatgc
     7381 aggttttggt gatgctggag gagatccact tttcaacgaa gcacgtgcct tggtagttga
     7441 gacacaaaaa gccagcgcct ctatgattca acgacgcttg tctgttggtt ttaacagggc
     7501 aacacgcctc atggaagagc tagaagcagc gggtgtcatt ggtccagctg aaggaacaaa
     7561 acctagaaag gtattggaaa cacaataatg aaatttgatg cagttcatca tattgcaatt
     7621 atcggtagtg actatgacaa gacaagagaa ttttatgttg agaaactagg ctttgaacag
     7681 gtggatgaac atatccgacc agaaaaaaat gatattctct tcaatgtcaa aaaaggcaat
     7741 ctgatcttgg aaattttcat caaaccagat gcgccaatgc gtccggtcat gcccaatcct
     7801 gaacatacag gtctacgcca tctagccttc caggttgcag atgtggaagc ttgtctggaa
     7861 gagtttgacc gtttggatat ccgacatgaa gtcctgcgaa cagatgattt tgatggtaaa
     7921 aaaatggcct tcttctttga tccagatggc ctccctctag aaattcatga gtaagtccat
     7981 cttttcatgc ccagagaggc ctatcaatat gacaactaat taatactctt agaaaatcaa
     8041 aatcatacgc tgttgacttg atttgatgaa ggtcagttct atctatagtc atttgaatta
     8101 actttgatac atagtcactt tcggcttgcc gtactctgca gaagtgactt gctttgcaag
     8161 ttatatctcc aacctagcac agccactagg ctgtgctagc aacctgcacc tcagttcctt
     8221 gtctgaaagc taattcattc gactatacat ctacgtcgcc ttgtctgatt tagtataaaa
     8281 aagaatcccc actgcgcctg caatggggat ttattatgcc atctatgaaa ggatggatga
     8341 ttttaggatt ttaaagtgaa gaccgcaata accaaagcta gatacatcaa aaaggtcaag
     8401 ataaaactag ctcgccagaa aaccttgaag aaacggcgat ataaaaaatt ctttttcttt
     8461 aaaaggaaga aaccgcaaag accaatcgct agtagtgaga gggctaggac aagctgaggc
     8521 agtagactgt tatagtaggc cttatccgaa atcagataaa attcaattgc atagagagga
     8581 aaggcaatgt ctgcaaagtt ccatcctcgg ttttgcaacc taaaaaactt gacagcaatt
     8641 atcgaaatgg ccaaggttag aaagataaat agaaaggcta ctatttttaa aaatataatc
     8701 gattcaaaca tacattcatt ctataaaaaa tgtgaaaaaa agtaaaccta aagcttgcat
     8761 ttctttgaaa ttcgtgtata atgaaaaggt atgtgtaaaa cacatatttg tgggaggtaa
     8821 aaatctttaa ttaccgccaa aaccacaata ggaggatttt atatcatggc taaaaaagtc
     8881 gaaaaactcg taaaacttca aattcctgca ggtaaagcta ctccagctcc accagtcgga
     8941 ccagcacttg gtcaagcagg tatcaacatc atgggattca caaaagagtt taacgctcgt
     9001 acagctgacc aagctggtat gatcatccca gtagttatct ctgtgtatga agataaatca
     9061 ttcactttca tcactaaaac accaccagct gctgttcttt tgaaaaaagc tgcaggtgtt
     9121 gaaaaaggtt caggtacacc aaacaaaact aaagttgcaa cagttactcg tgcacaagta
     9181 caagaaattg ctgaaactaa aatgcctgac ttgaacgctg catctcttga agctgcaatg
     9241 cgtatgatcg aaggtactgc tcgttctatg ggattcactg ttactgacta agtagcaccc
     9301 aagattatct gattacaagg agacatataa catggctaaa aaaagcaaaa acttgcgtgc
     9361 tgctcttgaa aaaatcgaca gcacaaaact ttacagcgta gaagaagctg ttgctcttgc
     9421 aaaagaaact aacttcgcta aatttgatgc gtcagttgaa gttgcttaca acttgaacat
     9481 cgacgtacgt aaagcagacc aacaaatccg tggtgcaatg gtattgccaa acggtactgg
     9541 taaaacttca cgcgttcttg ttttcgcacg tggtgctaaa gcagaagaag caaaagctgc
     9601 tggtgcagac tttgttggtg aagatgacct cgttgctaaa atcaacggtg gttggttgga
     9661 cttcgacgtt gttatcgcaa ctccagatat gatggctgtt gttggacgtc ttggtcgtgt
     9721 acttggtcca cgtaacttga tgccaaaccc taaaactggt acagtaacaa tggatgttgc
     9781 taaagcagtt gaagagtcta aaggtggtaa aatcacttac cgtgctgaca aagcaggtat
     9841 cgtacaagct cttatcggta aagtatcatt tgacgctgac aaactcgttg aaaacttcaa
     9901 agctttccac gatgtaatgg ctaaagctaa accagctaca gctaaaggta cttacatgac
     9961 ttcagtatct attacaacaa cacaaggtgt tggtatcaaa gttgatccta actcacttta
    10021 atcaatagaa agattgtctt agggcaatct tttttttgag attttcttga caagcactta
    10081 atttcgattt atactatatt caatttacat aaaaggagtt atccgatgaa agtagcagag
    10141 aaagaagagc tttataaata cctttctgca gcctacaacc ttccgcagga agcattttca
    10201 gaagccctgc gtgaaaaaat attggaggta gcaggtcagc tggacaagga ggaaaatctc
    10261 tatatactgg caggacactt aagtcgcttt atcaatgcag agttaacagc tctgacttgt
    10321 cgagcgccta aggaattggt gcaactagcc cattaccttc aagaggttca aaaccattat
    10381 cgctatgcta gtctttttcc aggaaaggta aaataggaga aaacatgaca gaatatacaa
    10441 aaccactcgt ttggaagtgg gaagatgaaa atgacaaccg atctggcaac cgtccaacag
    10501 caggcagtcg ctttgagcaa gacctaccaa agggagagaa gtctttccaa gtctattcat
    10561 taggaacgcc gaatggcatt aaggttgcta ttatgttgga ggagttgaaa gagttaggta
    10621 tttcggaagc tgattatgac ctctttctca tcaatatcgg tcaaggagac caatttggct
    10681 ccgattttgt tgccatcaac cccaactcca aaataccagc tatggtagat tattccgagc
    10741 aagaaccgat ttcggtcttt gaatcagcca atattctact ttacctggca gaaaagtttg
    10801 acgccttttt accaaaaact tgggcagagc ggacagaggt tcttaattgg ctcttctggc
    10861 aaactggcgc cgctccattt gttggtggag gatttggaca tttcttccat tacgctccga
    10921 cagcgcaaga atatccgatt aatcgctata caatggaaac taagcgtcag ctagatctct
    10981 tggataagct attggcgaca agagaatata tagctggaaa tacctatacc atcgcagata
    11041 ttgctatttg gtcttggtat ggtcgcttgg tgcaaggaga actatatcca ggttcagcag
    11101 aatttttaga tgttgattct tacaagcatc taaagacctg ggtagagaaa atagctcagc
    11161 gcccagctgt acaacgaggg ttgacagtga aatatcattc aattgataat taattgactt
    11221 gcccacctta tgggtggttt tttcttttac tttggtatga taaaagttta taatgaaaga
    11281 gttagacttt gtgaaaatcc aaaaatagaa attaataatt gatactcaat gaaaatcaga
    11341 attagactag gcgacgtaga tgcagataga actgaagttc accaaatcaa gtcaacaacg
    11401 tctgattttg attttcgaag agtatgagtt tttcctgtct tatatttaca tagaaagtaa
    11461 tagaaaaatg tccgaaaaag ttgaaatgca gcagtccaaa gaacaggcga cagtggccag
    11521 aggcttggct tggttgactg ctggaaatat tcttagtcgc ctgcttggtg ttgcctatgt
    11581 tattccctgg tatatttggt taggggaata tcgagctgaa gccaatgccc tctttagtat
    11641 ggggtatcaa atctatgcca acttcttatt gatttcaaca gctggtcttc cgacagctat
    11701 tgccaaacaa gtagctaaat acaatatctt aggtaaagaa gaggtgtcgc tttacttggt
    11761 cagagaattc ttcaagctca tgttggtctt tggagctgtc tttgcagggg tcatgtatct
    11821 aagtgctccg tggttggcag acgcatcggg gtcgaaggaa aagttacttc cggtcatgta
    11881 tagtctagtc ccgcctctct ttatcttccc agccatgagt atcttgcgtg gttttttcca
    11941 aggtcggcac gatatgaagc cctatgctat cagccagctt gcagagcagc tggtacgggt
    12001 tatctggata ctggcagcaa catttatgat tatgaagttg ggtagcggtg actatcttga
    12061 agcggttgtc caatctacct ttgcagcttt tgtcgggatg attgctagtg ttgggatttt
    12121 agtttatact ttatggaagc aaggctacct tggtaagttg cttcatgcta agaaacaaaa
    12181 gatttctttg gatacaggtc aacttattaa ggaaactgtt cgagatgcga ttccaattat
    12241 cattttaggt ctaacgcttc aattattgca gtttattgat caagtcacat ttattcgtgt
    12301 tatggaaaga attacggatt acagtaattc ggaactttta gaactttatt catatatggc
    12361 tgccaatcca agtaagatta cgatgatgat tatcgggatt tcactgagtt tgggaagtgt
    12421 tgctattcca ttgattacag agaaatttgt caagaaagat ttgaaggcgg cgtctcattt
    12481 agtggcggat aatctacaat tactctttat attcactata ccggcaattg ttggaacggt
    12541 cttgttggct gggccacttt atacgatttt ttacggaccg tcagacccta tcgccattac
    12601 tctatttatt tggaacttat ttttaatttt acctctggga ctatattctg tcattagtgt
    12661 ggtcattcaa gcgatatttg aaaatagaag agccatttat tatttcttga ttgggatgct
    12721 agtgaaaatc gttttacaag taccaatgat ctatgtcttt aaggtatatg gtagctttat
    12781 ctcaacgata tttgggttgg gaattatgct gtacctcttc tataggcgaa ttgacaaggt
    12841 tctgcatatt gatgaaagac tagtgataaa agatattgcg accattagtt ggatttctat
    12901 cgtaatggga ctcattgtat gggggattga atttgttttg aatcttatcc ttccagcaaa
    12961 tggctatgta tctagcttta tccacttggc tgttgcaggt ggagcaggta tgcttgtctt
    13021 tgtcatcttg acattgaaga ctcgtcagct agatcgttta attggaagtc gggctcagag
    13081 tttacggagg aaattgcgcc taggctagtt tgttttaaag atctctattt tctactattg
    13141 aaaagctggg aaaaagaggc gttttagaat gtgagaagga aagttcgttg aggattttcc
    13201 ttttttcttg gagatttcag tataaaaaaa acggtttttg tggtagaata gtagggataa
    13261 aaaagaggag agagatgatg aaacctaaat acgaacgtat tctaatcaaa ctatctggtg
    13321 aagccttggc tggtgaacgt ggtgtcggta ttgaccttaa aactgttcag gaaatggcaa
    13381 aggaaattca ggaagtcgca gaatcaggta ttcagattgc ccttgttatt ggtggtggta
    13441 acctttggcg tggagaacct gctgctgaag cgggtatgga tcgagttcaa gcagactata
    13501 caggcatgtt ggggactgtt atgaatgctc ttgtaatggc tgattccctt aaacagcttg
    13561 gtgtggatac acgtgtgcag acagcgattg cgatgcagtc agttgcagag ccttatattc
    13621 gtggtcgtgc tcttcgtcat cttgaaaaag gtcgcattgt tatttttgga gctggtattg
    13681 gttctccgta cttctcaacg gatacgacag cggctcttcg tgctgcagaa attgaagctg
    13741 atgcgatttt gatggctaaa aatggtgtgg atggcgtcta caatgctgat ccgaagaaag
    13801 atgctaatgc agttaaattc aatgaattga cccaccgtga agtgattagt cgtggtttga
    13861 aaatcatgga tgcgacagca tcaactctct caatggacaa tgatattgat ttggtcgtgt
    13921 tcaatatgaa tgaaccagga aatattaaac gtgttgtctt tggtgagcca atcggtacta
    13981 ccgtttcaaa ttcttcagaa gaaaaataaa tcatatcgtc atttagtttt tcttttatta
    14041 cttcgttaat ttgccttgcc taacttcggt tatacctgtg gctcgttacc tagtactaaa
    14101 agtaaactaa aagactgtaa aaaaatacaa agaaggaagt cttatgtcta aagaaattat
    14161 tgctaaagcg caagatcgca tgaaccaatc tcatcagagt ttggcacgtg aattcagcca
    14221 cattcgtgct ggccgtgcca atgctagttt gttggaccgt atttcagttg agtactacgg
    14281 ttctccaacg ccattgaacc agttggctgg tattacagtg ccagaagcgc gtgttctttt
    14341 gattactccg tttgataagt caatcttgaa ggatattgag cgtgctttga acgcttcaga
    14401 tcttggtttg acaccgcaat ctgacggtac tgttatccgt ttggttattc ctgcccttac
    14461 agaggaaact cgtaagaact tggcgaagga tgtgaaaaaa gtcggtgaaa attcaaaagt
    14521 tgccatccgt aatatccgtc gtgatgccat ggatgaagct aaaaaagctg aaaaagcaaa
    14581 agaaatcaca gaagacgagt tgaagacgct tgaaaaagat attcaaaaag taacagatga
    14641 tgctatcaag acaattgata aaatgactgc cgacaaagaa aaagaattgt tggaagttta
    14701 atcaacacgt ttttaggcta caaaaataga tcatcactgg gctgtctaac ttccagtggt
    14761 gaaccaataa gaaatctaat ggggggagtt agacaagact tcccccactt tttaatcaga
    14821 aagaagaaaa tcatgaatga tttattagca cagtatatcg ttggtttagt gactgacgaa
    14881 aacgatcagt tttactttgt ccaaaaagag gggagaacct ttgctctttc taaggatgaa
    14941 ggagaacata gtctaggtca atctgttaag ggatttgcct atactgatat gaaacaaaaa
    15001 ctccgtttga caactaagga agttggagtg agtcgtacca gctttggttg gggaactgtc
    15061 acagaggtac gtaaggattt gggtgtcttt gtggatacag gtctaccaga caagcaagtg
    15121 gttgtttcct tggacatttt gcctgaaatc aaggaactct ggccgaagaa aggggatcag
    15181 ttgtacgtca aattagacgt cgataagaag gatcgcattt gggctctgcc agcttttcag
    15241 gaagattttc agaaaatggc tagacctgct tatgacaata tgcaaaacca aaatctgcga
    15301 gcgattgtct atcgtttgaa aatgaatggt acttttgttt atttgccaga caacaacatg
    15361 cttggtttta tccacccaag tgaacgcttt gcggaaccac gtctgggtca ggttttggag
    15421 gcgcgtgtca tcggttaccg tgcagttgat cggaccttga acttgtctct caagccacgt
    15481 tcatttgaga tgctggaaaa tgatgctcag atgatattga cttatctgga aagcaatgga
    15541 ggtttcatga ccttgaacga taagtctgct ccggaagaca tcaaggccac ctttggtatt
    15601 tccaaagggc aattcaaaaa agctcttggt ggtttgatga aggctggaaa aattaaacag
    15661 gattcttttg gaacagaatt ggtctagggg gcgtctatgc tagtatatat tgctggtagt
    15721 ggggcaatgg ggtgtcgttt tggttatcaa ttgtctaaga caaatcatga agtgattttg
    15781 ctggataatt gggaagaaca tatcgaaacg attctagaaa acggcttgaa agtgactgga
    15841 gatgtagagg aaactgtata cttacacatc atgaaaccga ccgaagcaac gagagaagca
    15901 gattttatca ttctattgac taaggctgat cagttgccaa agatgttgcg ggatattaaa
    15961 ccgattatcg gtccaactac caaggttttg agtctcttga atggtttggg gcatgcgacg
    16021 accatgcgtc ggtacgtgcc agatgaaagt attatggttg gggtgaccat gtggttggcg
    16081 ggactaaagg gtcctggaca tgctcactta gaaggtccgg gttctatgtc cgttcagcat
    16141 attcttggtg atgagcaatc agttgcggat attattgaaa tgctgaatga agctggacta
    16201 aatgtgacct atgacaatca tgttgtcagt gccatttggc agaaagcctg tgtcaatggt
    16261 gtgatgaatc caacttgtac cattttagac tgtacaattg gtgaattatt tggtacggag
    16321 gctggactga atctagtaca ggggattttc aaagaattta ttgctgttgc taagtctgag
    16381 gcagatggaa ttgacgaaga agctatttgg aaatatgtta ttgatgcttc gaagaaggct
    16441 tccaatcact atccatctat gcatcaggac ttggtccaac atggtcgaaa gacagaaatt
    16501 gattatctga atggagcggt tgtttttaag ggcaaacgtg caggtatccc aacgccatac
    16561 tgtcagatga taacagatat gattcatgcc aaggaaagta tgctggggtt gagataggag
    16621 aaagtcatgc tgattgaagt ggaaacgatt gaagaatata tggctgcctt gcctgaaaat
    16681 cggaaggaag cagttggacg actccatcaa gtgattgtgg aacagttacc agctggtttt
    16741 gaagtaggca tcttgggagg tatgattaac tattatgtgc cacttactgc ctaccctgat
    16801 ggttatcatt gcacaccggg agagcccttg cctttccttg ccttggcatc acaaaaggca
    16861 catatcgccc tctaccacat gggaatctat atggaccaag aattgaatga ttggttcgtt
    16921 gctgcttatc aagcacaggt gcctaccaaa ctggatatgg gcaaatcttg tgttcgtatg
    16981 aaaaatccca agaatattcc ttatgaattg attggggaat tggttagtaa gatgtctatg
    17041 gagcgctata tagagctcta cgaaaaaaat catagaaagt agatgtagtg agaagaagtt
    17101 tttattcttg gttgatgacc cagcgcaacc cgaaaagtaa tgaaccagta gctatcttgg
    17161 cagattatgc ctttgatgaa tctgattttc ctaagcaatc agataatttc gatgaagtca
    17221 gtcgtttttt ggaggaatcg gccagctttg ccttttccat gtctgatttt gatgcgattt
    17281 gggaagatta tttgggacat tgatggataa aatagtacaa aatagccttg tttgggctat
    17341 ttttgttata atagagaaaa gcacaggaaa aggagcaact cttgctagaa cattcaattg
    17401 atattcaact caagcatcca gatgattcat ttagcctatt tggttcgaat gaacgccatc
    17461 tgagattgat ggaacaggaa ctaggtgtgg ttattcatgc ccgtacggaa aaagtgcagg
    17521 tgattggaca ggaagaacat gtagaacagg cgcgtcttgt tatccagtct ctccttgtct
    17581 tggtgagtcg tggtttggtt atcaatacgc cagatgtggt cacggctatt tccatggcaa
    17641 aaaatgatga gattgagaaa ttcgttgccc tctatgaaga agagattatc aaggacaact
    17701 atggcaaacc cattcgcgta aagacccttg gacaaaaact ctacgtggac agcgtaaagc
    17761 gtcatgacat cgtatttgga atcggtcctg ctggtacagg gaagaccttc ttggcggtta
    17821 ctctagctgt aacagccctc aagcggggac aggtcaagcg cattgtcctg acccgtcctg
    17881 cggtcgaggc aggtgaaagt ttaggctttt taccagggga cttaaaagaa aaagtagacc
    17941 cctatttgcg tcctgtctat gatgccctct accagatttt gggcaaggag cagaccacgc
    18001 gcctaatgga gcgcgagatt atcgagattg caccgctggc ctatatgcgg gggcggacct
    18061 tggaagatgc ctttgtcatc ttggatgagg cgcaaaatac caccattatg cagatgaaga
    18121 tgttcctgac ccgtctgggc tttaattcca agatgattgt caatggggat attagtcaga
    18181 ttgacctgcc acgcaaggtt aaatcgggct tgattgatgc gacagagaaa ctaagcaaaa
    18241 ttccacagat tgatttcgtg catttttcag ccaaggatgt ggttcgtcat ccagttgttg
    18301 cccagattat caatgcctat gaagaggagg ctcgggcagc tgatagtcga gcaagttttg
    18361 aaacgattgg ggagcctagt cggaaataca atggtgaaga gtagttgttt cattggctga
    18421 tatataaaag aattgttatg ctagttacat ttgatatata ataaaaagcc tgaatggacg
    18481 atactgtaag tgatgaaaca aacaggagct tagtccaaat aagcgactta caccatatcg
    18541 taaaatcaca tcgtacagca aatatcaact atttgtcaca agttatacca agcctattgc
    18601 ccgactccct taaagcattg tcacaacgtt gctttgtcaa cggtatcaga taaatctatt
    18661 aaaatattgc tagtacttca agttggatta gagattaaat ctcaacgcca ttttcgaacc
    18721 agccctcatt atagcggata ggggtcatag aacctataac tttatggatt gttaccaata
    18781 aaaaggctgg ttctatctga ttcagattcg agatgggaaa agcagcatga aaccgagttt
    18841 tactcccttt cttttcgcat gttcggcacc gataagtatg aaaccctcgt ggccaattgt
    18901 gataaacctg tagactatat aaaaaagcct ccttttgtgt tgtctgaaca taaaatccca
    18961 agtattacat cggaaaaata cttgggatta gatatcatag attaactgat cagagttaac
    19021 ttagagacac tgattgatgg cggggctttt atgcacgaat aacaagaagt ggcttaagac
    19081 caaaacttgt ctgcaatttc ttggccttgt ttaatttttg cccactgttg cgggatggcc
    19141 aattcattac ctgaatcaca tgaagcgaat ccacattgat gtgacaagta gagacgctct
    19201 tttggaataa tcttgcttgc ttcctcgagt aatttgtaaa cacgttcttc atcatccaaa
    19261 tcagaagttt tacttgaaag tagaccaaga acgacttcga cattcttgtc acgcaagctt
    19321 tccaaagctt ttaaatcacc tgcacgttca tcatcccact caaggaagaa tcgatcgtat
    19381 ttttggtcac gcaggaattt tttagcaata gcttcgtaag ttccgccagc tgcagagcgg
    19441 ctttcatagt taccacggca gttgtgcctc cagacggtca agccaatttc atgtccgtaa
    19501 tcaataacag cattattgat agcaacaaac tcgtcagcca aagcagccaa tgcttcagaa
    19561 tcgtcttgtg gcaagaaagg tacagggtta gcagggtcga ataattccca aaggcagtca
    19621 tcaaattgaa cgatttgtcc accagcttcc ttgtactggt ctaaaaattc cttataggca
    19681 gcgatgagcc cggcttttaa ttcatcatga gtcttgtaga cttgatttgg tccaacttgt
    19741 ccattgaaaa ttgtcaattc attaaaggca tgggctggac cgaaaatagt ctgtttggtt
    19801 acagtttctc ctgctaattc tttcacttgt ttgaaaatat caatgaaatg gtgatttttt
    19861 gcagaaagtg gagcagtaat acgcaatcca atatccttac gtgtttcaaa aatctgtcca
    19921 tcatggtctt taaatggata accatgctca gcaatgtaac gctcgatacc gtcgaagccc
    19981 cagagaaaat ctaggtgcca cattgaacga ccaaattctc catctgtcac aatatccaaa
    20041 ccgttttctt tttgttctgc aacaattttt tggatgagtg aagcttcagt ttctttgtaa
    20101 ccatcgaagt catcatagaa tgggtatttg atgtcttcac gagcttcgat ttgtcgttta
    20161 aattctccta agtttgctgg tcgaagaagt gaaccgacta attggaatct tgaagttgtc
    20221 atatgtgtgt ctctctttcg ttttagtgat gaacctattc taactcataa gctatcattt
    20281 gaaaaatagt tattttcatg gcaaatccat agttaaaaac tataactaga aaaaatagac
    20341 ggaaataact ttctatcatt tgtcaactat ggtataatcg aaagtgctga aatccgaaca
    20401 ttaggagact taggagaaaa atgaaaaaac aatcaccctt tataattgca ggaatcgtca
    20461 tgctaggggt cgtgatgcgt gcccccttta cagctttgcc tgctattttg acagatgtgg
    20521 cagcaggact gggagtagaa gtgagttcat taggaatttt aacctctatt ccgctcatca
    20581 tgtttgctct ctgttcatcc ttagcaccgc gtcttgcggc taagtttggc atggaaaaac
    20641 taatggccct agtcttactg gttatggtac tgggttcagg aatacgagtt ctcaacttac
    20701 cagcccttta cattggtaca atgcttgttg gtgctacaat agcatttatt aatgttttgc
    20761 taccaagttt ggttgcggct aattttccaa agaaaattgg tctgtatacg acgatttata
    20821 tcactctcat gggggtggcg gcaacagttg catctatgat tgctgttcca attgtatcct
    20881 ctagttcttg ggaatttttt attctattaa ttacaggatt ggtgtttatg gctttcctaa
    20941 tctggttgcc taatgtaaga aataaccatc gatttgcaag tgagaaccaa ggaaaccaga
    21001 aatcatctat ctggaaaaat aaagcagcga ttgccttttt gatatttggt gggctacaat
    21061 cagtcctcta ctatacagag attacctggt tgccaactat ttctcaatca gttggcttta
    21121 gtaaggcaga agcagggcta atggctggct tcttcaatat gacagctatt cccatgtcta
    21181 tgattatccc agctgttctt tcccgtcaga caaaagaaat gcgtcgaaat atcatgctgg
    21241 ctatttcatc tgttacctta cttggtttgg tcatgatggt attgattccg accaatctca
    21301 ttctttggtc agcgcttcac attattttaa gtttttcaaa tgcagccctc ttcccttata
    21361 tgatgttgag ctttactttg aaaacaagca acagccaggc tactgcccag ttatcaggaa
    21421 tggtgcagac aggtggctat ctcattgcag catttggacc aggccttctc ggttacagct
    21481 atccaatctt cggaaactgg atgccattga ttcttgctct ggctatcgtc acacttgcca
    21541 tgatgtggac tattgttctc attgaaaaag aagatattat cttataaagt ataatccctt
    21601 aagaaggctg gcatttttct gtgaaaatgg cagagcttct aagggatttt ttgtcaaaca
    21661 aaaaagctag acatttgcca gctttttaat gtgccacacg gcgacgtgca gcttttttgc
    21721 gattttcttc gatgaaagct tctttctttt cttctggttc aatgattgtt ttgtgaacag
    21781 tgaagactgc gcctgctgca agagcaactg tagaaagaac acctgtcaag aaacctttac
    21841 caaaaccttt agccatagtt atttctcctt tacttgtgtt ataatagatt ttagcgaaaa
    21901 aacaaaatat tttcaaggaa aaagatgaaa actaaagtta ttgtggtcat tggaccgaca
    21961 gcggtaggaa aaactgccct tggcatagac ttggcccagc gctacaatgg agaaattatt
    22021 agcggtgata gccagcaagt ctatcgcaaa cttgatattg gcacggcaaa agctagtcct
    22081 gaagagcagg ctgctgcggt tcatcacttg attgatgtcc gagatgtgac cgagggctat
    22141 tcggcttatg aatttgtagc ggaagccaag gccttaattg cagacattac tagtcgtgga
    22201 aagttgccta ttatcgtggg tgggacaggg ctttacatac aaagtctgtt agaaggctac
    22261 catctgggcg gtcaagttga ccaggtgcaa gttcttgctt atcgggcaga acttgatagc
    22321 ttgtctgacg aggatttgga aacaatggca gagcaggcag gtttgatggt cgagggaaac
    22381 agccgacgga gaatcattcg tggactggaa ttgaaaaaat ttggcgaaaa cttagaaaat
    22441 acagagtcag gatatgagcc actttacatc tgtttgacgg atgacagaca ggttctttac
    22501 gaccgcatca atcagcgagt ggataagatg atggcggcgg gcttactgga tgaagttagc
    22561 tggctctacc aagaacatcc ccaagcccaa gcagccatgg ggattggcta caaagaattt
    22621 ttcccttatc ttgcaggagc catttcgctg gaagaggcta ttgataaggt caagcaaaac
    22681 agccgccgct ttgccaaacg ccaattgact tggttcagaa atcgcatgca ggttcccttc
    22741 tattcagtag gcgagccaga ttgcaagtcg cagattttca ccgccgtgga ggaattttta
    22801 aatgattgaa acgcagaaag aacaagaacg cgccctcctg gttggagtgg aattacagca
    22861 gacagacaac tttgacatgt ccatggagga gttggcaagt cttgctaaga cggctggtgc
    22921 tctggtcaag ggagtctaca ctcaaaaacg agaaaaatac gacagcaaga cttttgtcgg
    22981 ttctggtaag ctggacgaaa ttgcccagat ggtcgaagct gacgagattg atactgtcat
    23041 cgtcaacaat cgattaacac cccgccagaa tgtcaatctg gaagaaattc taggtgtcaa
    23101 ggtaatcgat cgcatgcagt tgatcttgga tatttttgcc atgcgggcac ggagtcacga
    23161 agggaaattg caggtccacc tagcccagct caagtacatg ttgccacgct tggttggtca
    23221 gggcatcatg ctcagccgtc aggcaggtgg tatcggctct cgtggaccag gtgaaagcca
    23281 gttggagctt aaccgccgga gcattcgtaa ccagattcat gacattgagc gccaactcaa
    23341 aacagtggag aagaaccgag cgactgtccg tgaacgccgt ttgcaatcag gcgtgttcaa
    23401 aatcggcttg attggctata ccaacgcggg taagtccact attatgaatg tcatgacgga
    23461 caagcgacag tacgaggctg atgaactttt tgccacacta gatgccacaa ccaagcagat
    23521 taacttggca gacaaattta atgtgacctt gaccgatacg gttggtttca ttcaggacct
    23581 gccgactgag ttgatttctg ccttcaagtc caccttggag gagtccatga acgtggatct
    23641 cttgctccat atcatcgacg cctctgaccc caatcacagt gagcaggagc aggtggtctt
    23701 ggacattcta aaagacctgg atatgctgga cattccacgt ctagctctct acaacaagtt
    23761 ggacaagacc gatgacagct ttacccccag tcagttccca catgtcatgc tgtccgctaa
    23821 ggatgaaaat gccaaaggtc atattcagat gatggtcttg gccaagatta agaccatgtt
    23881 tgaacgattt gaggtcaggg ttccacttgc tgaatcttat aaattgcatg atttagcaac
    23941 tcttgccctg atagaaaatc ggacctatga agaggatgtg gaagtggtat caggctatat
    24001 cgcttccgct aataaatgga agttggaaga attttatgac ggattatctt gatttggcaa
    24061 tgaaatacgg tggctttacc agtctggaca aggtctatct ggcgaataaa ttagctggtt
    24121 tgacagacca acaaaaacta gattttatca cgccaccgcc ttcggttatc aatgcctatt
    24181 ttgcggaaat ctaccagaaa caaggggcag aagaggcgac ggactactat ctcactcttt
    24241 ctcagcagct ctgccttttt ccaaaagaac ccagctttgc tgaaagcaag ccctttgtcc
    24301 gcctgaattt atcaggtaag tctttcggct ttacctatgt gtcggcggac ggtctggccc
    24361 aggttttttc ggaaggtgta gaggaagtga cggaaagttt gctctttgaa atcgcccaag
    24421 tctttcccca ctatgtcgtc tttgtggagg agggcaagat tttcatgaaa gtcaatccct
    24481 ttgaggacgc cgagttagag gacgttgaga cagactacct tttgacccaa gtggcgacga
    24541 cagaaggttt ggtcaagatt tcaggcttta atcaggaaga agtgctggag gtggcggacg
    24601 gctatgctgg tcagtattac tatgtctggt cgggtcgctc tgcaatttta tatataaaac
    24661 attagaaagt aaacaatgca aattcaattt ttaggtacgg gggctggtca gccctccaag
    24721 gctcgaaatg tatccagttt ggccttgaaa ctcttggatg aaatcaatca ggtttggctc
    24781 tttgattgtg gtgaaggaac tcaaaatcaa attttagaaa cgactattcg tccacgtaag
    24841 gtcgcaaaaa tctttatcac tcacctgcac ggagaccata tttttggact gcctggtttt
    24901 ttgtctagcc gttctttcca gtctagcgat gagcagacgg atattgatat ttacggtcct
    24961 gttggcatcc gttcctttgt cttggcaagt ttgaaggtat cagggacacg cctaccttat
    25021 cgcattcatt ttcatgagtt tgatgttgat acggtcggcc aggtcctaga aacggacaaa
    25081 ttcacggtat tcgctgaaaa gttggaccat accattccgt gtgtcggcta tcgtgtcatc
    25141 cagaaagatt tggaagggac attggatgca gaggctctgc gcgcggcagg tgtgccattt
    25201 ggtcccttat tcggtaaaat caaaaatggt caaaacgtga cgctagaaga tgggactgaa
    25261 attatcgcga gtgactatat ttctcctcct cggcctggta aggtagtgac cattcttggt
    25321 gatacgcgca agtgtcatgc tagtgtccgt ctggctgtca atgctgatgt gctggtgcat
    25381 gaggcgactt acggaaaagg cgatgagaag attgctcgca agcatggcca ttcgaccaat
    25441 atggaagccg ctcaggttgc caaggatgct ggtgtcaagc agctcttgct taatcatatc
    25501 agtccacgat ttttatccaa ggatattagt caattacgga aagatgcaag tactattttc
    25561 gagcaggttc atattgtcaa ggatttagag gaaattgagc tatgagaacc attctaatca
    25621 caggtgcctc tggtggcttg gtacaggaaa tggtgccatt gctgaaagat gattttttga
    25681 ttttactagg tcgtgatgtg gcaaaaattg agcagctcta tgttcatcat gaaaaaaagg
    25741 ctgtctttga tgtggacatc cgagatgaaa tggccctgac ggcatttttt gatgaactgg
    25801 atagtcagtt tggtcagatt gatattttag tcaataatgc tggctatgcc atttatgatg
    25861 attttgagaa tttttccagc cagcaggtgc aggatatgtt tgacatcaat acttttgctc
    25921 tgatgaccat gtgccgttta gtaggtaaac gaatgaaggt aagacggagc gggcagatta
    25981 tcaatatcat ttccatgtca ggcttgatcg cttctgccaa gtcttcggtc tattcggcga
    26041 ccaagtttgc agctatgggt ttttcaaata ccattcgctt ggaattagcc cagtatggtg
    26101 tgacagttac aactgttaac ccaggaccta ttgcgactgg ctttttcggt caggcagatc
    26161 ctgacggaag ctatcaagag agcgtcaagg ctttcttgct gcaaccagac tatgttgcca
    26221 agaagattgt ttcggctatg gggacgaaaa aacgagacat caatttgcct tggtcactag
    26281 cagctgctca taaactctat actctctttc cgagaatagc agactacttg gccagtacag
    26341 tatttaattt gaaatagaaa aacgccgaaa taaaactcgg cgttttcgtg tagactagct
    26401 acgctctttt ctacgtaagg cgatactgcc tagaagtagg ctacctaatg cgatagcgat
    26461 atagtttgtt ttttcacctg tttgaggtag ttgttttgcc tcggtagact tggtggtatg
    26521 tactactgta gtattttttg gtgcttcatc caaaatattt tttggcattt caggttgtgg
    26581 tacaagaatt tctacagctg gtaagtcttc taaggttgct aattgactac caaatagggc
    26641 gttggacacc caacggaaga agtgaacagg gtggaccttg tttgttggat tacctgcata
    26701 gataaagaca ggttggtctt gataatttcc agcgatggcg acaattttat tggctaattt
    26761 gtcatgacca ggccaccaac ctgcgatata ataatcttta tcagcgattt taacaagcgt
    26821 tttaaatcct tcaggaatac cttcaatcca attaccggag ttggaataga aaagtccatt
    26881 catggcgtag ccacttgtta atggatcttt atcatcaata atagcccgca tgagaccttc
    26941 atagtcacca ccatctgtaa attgttccgc attgaaacct gctaagattc ctaattcctc
    27001 cagtttttgc atggcgacac cacctacgat gataattggt ttcttaccaa atacactggc
    27061 atcgaattgg tctgattcga gaatgatagc atcagcctca tctgcgctat tgacaatttc
    27121 aaagcccatt cgttctacag caagtgcagc atttgcaaga atggcaaagt cgcctgccca
    27181 actataagag tgagaaggag catacacctt cattgctttc aattcttgtc caataggctt
    27241 cttatagaga ggctcgccgt atagagcata ggtgtccagt aagtgactaa attggttagt
    27301 ttccaagatg tagccatcgt ctgtcaggta gaccttagcg cctgatttga tggcttgatt
    27361 aatggcctgg acagcgcttt cagaggtgtt tgtgacgaca taataaggcg ctttgaaatc
    27421 aatttccgta gtacgtggag cttttgtcca tgtgatgcta cctaatttgc tgctaaaggc
    27481 attttcttca aatacagcct tggcgctaaa gcctttcata tctgggaagt tgaccaccaa
    27541 ttcagcatac atggctcccc aggcagattc atcagaacca gcgtagagga catggttagc
    27601 gaatcctcgt ttggcttgag ccatatcgac aactaggtcg cccttgcgga agtttccaac
    27661 atcttcagtt aattccttga caacaacccc attacgattg aaatattcaa tcatcttaaa
    27721 tgcttcttgc atatcgttgt gtttatcgag cgtcatagga atcacatagt agtctgggaa
    27781 gaattttggc tggtcttttt tgacacgtcc gacaacagct ccgtctggtc cgactagttc
    27841 agactctgct tttggatctt ctaccttatt gacaccgcgt gaatagtatt tgagacgcat
    27901 ttccataaga ctatctggct tggttgccat attgtgaaca ccgcccaaaa cagcaaagaa
    27961 tcccgccttg aatgattctt gatttccttc tggaatttca atcgtgtgtc caagaatacc
    28021 gtggtacatt gcatacaccg ctgtatagcc tgagaaggaa tcgtcccaac catctcccca
    28081 gtggacttta gggatggtgt agcgttcata tttagaattt gcaatacctg ctcggcccat
    28141 ttcatgagct ttttccagca taatatcggc tagtaaatca tattcaaagt tcgggtcgtg
    28201 tggcggagta gcaggctcga tgagaaatcc agatacaaaa ccatgaatat ctaaaacaga
    28261 tattggattc catttgtgga tttgacggac gatggcttgt gtttctggat tcacttggaa
    28321 accagtatca cggttagggt ccaaaccatt tactagtgaa cgcaagtttt taacatcgcc
    28381 atcaggattt tctgtgaaat tgaacaagaa gataaattta tctaacaaat ctgtcacttt
    28441 taaatgaaga gtaacaggat ttccatcggc atctgtagat gggaaggtga tggtatcttt
    28501 ttgtgcaaat tctttgaata ggctagttac cacatctatg ccgggttgtt catcagcatg
    28561 agtgttgttg atgagaatag gtaatttata gtcgaaggtt ccagcttgca actgtttcag
    28621 catctggtcg ggttgggtca gcatgagtgg tgttgtttca gtaagatatt tatcaatact
    28681 tgcttgatct ttagccacaa cagccatttt aatgtctcta ccttcagctg attgaccaat
    28741 tgactcaatc cttactaggc ggtcggtcgc agcattattt ttcgtttcct ccatctctgt
    28801 caacatttcc tcatgtgtac ggtaggcttc ataaggacgg aaatgaagag tttttgaaat
    28861 tatcaagttt ccatcggcac tagtaccttc caacagcata tcttttataa aatgtcgata
    28921 ggtacggcga atattactcg gtgtccgttt actcaaatct tctccaaaga gagctgcgag
    28981 ctggatattc aaatgaagtt ggttatcctg tctgctttct tctactgtga taaatgtatc
    29041 gcctgtgaaa tctccctctt tcaaattcca ggttttccat tcggaaatag gctttccatc
    29101 caatgtccat tctatttttt cagtcgtatc tggaagtgtg acggattctg tgatagtgac
    29161 tgcttccgat agatagacag tttttgtttc gagtgtaact gtatcaatag tcggtacggc
    29221 agatttttct tctgtagtat cctgattatc attattagct gatctgagcg tagtttcctc
    29281 ggcattgggc tcggaagatg ttgtctcttc ttctgtggaa acaagtgcag gagaagtatc
    29341 tgctatttct tcagtttgtt tttctgtctc cttcccttct acaagattat ctgtagcttc
    29401 gcttgtgcta gttttcgtta taggagtttc ttcaggcagt ggagtcactg tttcactagt
    29461 agtaggtggt atctcctctg tatttgcgaa gaccgttccc tgagcgagag atgtagcaaa
    29521 aagaactgtt gaggcaagta ggacttgatt caacagcctt ttcttatatg aaagtttcat
    29581 gcgaacttcc tccttttgat aatgtgtacg gggtaataaa ttaaaacggg ttatttcatg
    29641 cttatctta
//
LOCUS       DASGCC010000007        28391 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.007, whole genome shotgun sequence.
ACCESSION   DASGCC010000007 DASGCC010000000
VERSION     DASGCC010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28391
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.007"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            325..396
                     /locus_tag="U1404_000188"
     tRNA            325..396
                     /locus_tag="U1404_000188"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:357..359,aa:Gln,seq:ttg)
     gene            520..1725
                     /gene="rpsA"
                     /locus_tag="U1404_000189"
     CDS             520..1725
                     /gene="rpsA"
                     /locus_tag="U1404_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEM5347181.1"
                     /translation="MNEFEDLLNSVSEVTPGDVVTAEVLTVDAGQANVAISGTGVEGV
                     LTLRELTNDRDADINDLVKVGETLELLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKL
                     VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTRNTERFVGQEFDAKIKE
                     VDPAENRFILSRRDVVEAEAAAARAEVFGKLAVGEVVTGKVARITSFGAFIDLGGVDG
                     LVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQPGPWDGVEQKL
                     AAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVL
                     EVNAADERVSLSIKALEERPAAVEGEEKAEKRAPRPRRQKREEKRDYELPETQSGFSM
                     ADLFGDIEL"
     gene            1763..1834
                     /locus_tag="U1404_000190"
     tRNA            1763..1834
                     /locus_tag="U1404_000190"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1796..1798,aa:Arg,seq:ccg)
     gene            1896..2924
                     /locus_tag="U1404_000191"
     CDS             1896..2924
                     /locus_tag="U1404_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016503195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid lyase"
                     /protein_id="HEM5347182.1"
                     /translation="MLHFENDYNKGAHPALLEALVASNQEGLSGYGTDKYTESAIEKI
                     RLATDCPHAQVTFLAGGTQTNQIVISSMLASYEGVIAADTGHIAVHEAGAIEFTGHKV
                     LALPHTDGKLVASEVENYISDFYADANHAHMVHPGMVYISHPTEYGTIYSKTELEDLS
                     KVCQQHNIPLFLDGARLGYGLAARETDLDLKTIAELTDVFYIGGTKLGALMGEALVFT
                     KNNQPKNFVSIVKHHGALLAKGRVTGVQFDCLFTDDLYLKLGRHTIAMAEQLTQILEE
                     KGFQFYLKSPTNQQFVIVKNEELTRLTEAGIAYGFWEKYDDSHSIIRFATSWSTSQAD
                     IDELINIL"
     gene            complement(2943..3326)
                     /locus_tag="U1404_000192"
     CDS             complement(2943..3326)
                     /locus_tag="U1404_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347183.1"
                     /translation="MKYVILKTPVFVWLLIFALIQIFGLSSFLPEPFDTRSLLPMGVL
                     TGCSIRVSSEVKDQDGQYAPFKYLWWVILGWTVIGILFGITIKAPLELHIALIVHAIA
                     GGIGYSLIERYAVYRYHYLQTKKKG"
     gene            complement(3387..3803)
                     /locus_tag="U1404_000193"
     CDS             complement(3387..3803)
                     /locus_tag="U1404_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347184.1"
                     /translation="MNTRKNTNKKPAGLTNFQKYLTFIGSILGIITACITIYTFTAKP
                     TTSSTSPSTTISSSSATSSPSQSSSDNPLTGVQDLTSSSSETTSSTQTETSSSVESTA
                     SSSSTETSATQASETRTETSTDTEVTSGASETTSNQ"
     gene            3916..5058
                     /locus_tag="U1404_000194"
     CDS             3916..5058
                     /locus_tag="U1404_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018543459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5347185.1"
                     /translation="MIYFDNAATTQVYPEVLKTYTEVATKIWGNPSSLHSLGSQATRI
                     LEASRKQIAELLGKDSKEIFFTSGGTEGDNWVIKGVAFEKAHLGKHIIVSAIEHPAVK
                     ESALWLKTQGFEVDLAPVNAQGFVDVSALESLIRPDTTLVSIMAVNNEIGAIQPIQEI
                     SQLLADKPTISFHVDAVQAIGKVPTERYLTDRVDFASFSGHKFHSVRGVGFVYVKAGK
                     KIAPLLTGGGQESDKRSTTENVAGIAATAKALRLTLDKAVDSQKRLAAMKQILVDELG
                     KYDDVTVFSGLEDFVPSIVTFGIKNIRGEVIVHAFEDHQIYISTTSACSSKAGKPAGT
                     LIAMGVPQKLAQTAVRISLDDDNDMGQIEQFLTIFKQIYQNTQKVR"
     gene            5060..6277
                     /gene="thiI"
                     /locus_tag="U1404_000195"
     CDS             5060..6277
                     /gene="thiI"
                     /locus_tag="U1404_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HEM5347186.1"
                     /translation="MNYSEIMIRYGELSTKGKNKMRFINKLRNNIKHVLSVYPEVTVY
                     FDRDRGHVYLNGADYQEVSASLKKIFGIQNFAPSYKIEKSVPALKEAVVEIMQSIYKE
                     GMTFKIAARRSDHNFELDSRDLNQVLGDAVFTAIPNVQVQMKSPDITLRVEIRPDAAY
                     ISHEEIKGAGGLPVGTSGKGTLMLSGGIDSPVAGYLALKRGVEIEALHFASPPYTSPG
                     ALKKAHDLTRKLTAFGGNITFIEVPFTEIQEEIKEKAPEAYLMTLTRRFMMRITDRVR
                     EERGAMVIINGESLGQVASQTLESMQAINAVTNTPVIRPVVTMDKLEIIDIAQEIDTF
                     DISIQPFEDCCTIFAPDRPKTNPKIKNVEQYEARMDVEGLVERAVAGIIVTEITPKEE
                     VKDEVDSLIEDLL"
     gene            6399..7724
                     /gene="brnQ"
                     /locus_tag="U1404_000196"
     CDS             6399..7724
                     /gene="brnQ"
                     /locus_tag="U1404_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HEM5347187.1"
                     /translation="MKKGALTGLLLFGMFFGAGNLIFPPALGVLSGENFWPAILGFVV
                     SGVGIAVIALIVGTLNPKGYVHEISRKISPTFATIYLVALYLAIGPFFAIPRTATTSF
                     EIGIAPLLGEANLGIWLFGFTALYFVAAYLIALNPSQILNSIGRILTPVFAILIVILV
                     VLGIFKYGSTSPLPAAEAYSAGQAFGTGFIEGYNTLDALASIAFSVVAVNTLKHLGFS
                     SKKEYVSTIWSVGLVVALAFSALYVGLAFLGNHFPVPADVLASDTNKGVYILSQATQA
                     IFGPGAQIFLAAMVIVTCFTTTAGLIVSSGEFFAERFPRFSYKVYATIFTLIGFGIAN
                     LGLNNIITFSVPVLLVLYPITICIVLIAIVNKFVPLSTYGMQLTVGVVTALSLVEVLA
                     GQFNWTAISKIISALPLAGQSLAWLLPALVGIVLSLFLPNKQESEVFEM"
     misc_feature    7792..7880
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            7916..8230
                     /gene="rplU"
                     /locus_tag="U1404_000197"
     CDS             7916..8230
                     /gene="rplU"
                     /locus_tag="U1404_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEM5347188.1"
                     /translation="MSTYAIIKTGGKQVKVEVGQAIYVEKLNVEAGQEVTFEEVVLVG
                     GEKTVVGTPLVAGATVVGTVEKQGKQKKVVTFKYKPKKGSHRKQGHRQPYTKVVINAI
                     NA"
     gene            8277..8570
                     /gene="rpmA"
                     /locus_tag="U1404_000198"
     CDS             8277..8570
                     /gene="rpmA"
                     /locus_tag="U1404_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEM5347189.1"
                     /translation="MLNLNLANLQFMAHKKGGGSTSNGRDSQAKRLGAKAADGQTVSG
                     GSILYRQRGTKIYPGANVGRGGDDTLYAKVEGVVRFERKGRDKKQVSVYPIAK"
     gene            8762..8911
                     /locus_tag="U1404_000199"
     CDS             8762..8911
                     /locus_tag="U1404_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347190.1"
                     /translation="MFRGSGMGSNLVKLVIDDLANRNSKAFQIAVEEEDLGTWKLYKR
                     RIVYL"
     gene            8983..9897
                     /locus_tag="U1404_000200"
     CDS             8983..9897
                     /locus_tag="U1404_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5347191.1"
                     /translation="MNIQQLRYVVAIANSGTFREAAEKMYVSQPSLSISIRDLEKELG
                     FQIFSRTSSGTFLTQKGMEFYEKAQALVKGFDQFEHLYLQPEEGEKTFSISSQHYDFL
                     PPLITEFSRSHPQYPHFRIFESTTVQILDEVAQGYSELGIIYLNERNTKGIMQKLDKL
                     HLQAVDLSAFQTHIYLREDHPLTKKAEVDPADLVGLPTVRFTQEKEAYLYYSENLIDT
                     SDSSVVFDVTDRATLNGILERTDAYATGSGYLDDESVNGITVIPLKGKVDNRMVYVKR
                     ANDELSSCAKDFIETMQAYFDKKKDENA"
     gene            9890..10354
                     /locus_tag="U1404_000201"
     CDS             9890..10354
                     /locus_tag="U1404_000201"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEM5347192.1"
                     /translation="MRKIGFPFLMVVLIGLDQFVKAWTVANIELDTVEPLLPGVISLA
                     YLRNYGAAWSILQNQQWFFTIMTIVAVTGLVWYYIKQIKGNIWTLFSLSLMIAGALGN
                     FIDRLRLGYVVDMFHLDFISFPVFNVADVCLTVGVGILFICIMKEESNGSKS"
     gene            10338..11231
                     /locus_tag="U1404_000202"
     CDS             10338..11231
                     /locus_tag="U1404_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5347193.1"
                     /translation="MEVRVEVGGIRLDKALSDLTDLSRSVANEQIKAGQILVNGQPKK
                     AKYSVQVGDVLTYQIPEVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTS
                     GTLVNALLYHVKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS
                     LRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTAKGKEAVTRFQVLERFGDYTLV
                     ELTLETGRTHQIRVHMAYIGHPVAGDEAYGPRKTLKGHGQFLHARTLGFTHPRTGEVV
                     EFTAEAPAIFQEALEKLRKAE"
     gene            11312..11650
                     /locus_tag="U1404_000203"
     CDS             11312..11650
                     /locus_tag="U1404_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEM5347194.1"
                     /translation="METLPNCPKCNSEYVYEDGALLVCPECAYEWNPADVAEEESGPV
                     AIDANGNRLADGDTVTLIKDLKVKGAPKDLKQGTRVKGIRIVEGDHNIDCKIDGFGAM
                     KLKSEFVKKI"
     gene            11698..12345
                     /locus_tag="U1404_000204"
     CDS             11698..12345
                     /locus_tag="U1404_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Pr6Pr family membrane protein"
                     /protein_id="HEM5347195.1"
                     /translation="MKHQSILFYSRCLLAILAITGTALEIIKYGIGMLMYYTVQSNLL
                     VSLFAVYMVYAMSKGVDLQTSHFLRIKAAVTMSIMITCVVYHFMLAPLADDFWRLENL
                     LCHYIVPLYFLLDTLIVDRQQQYKWFDPIWWTLLPVLYMIFGLVNGLFIKIPIPDAKD
                     SPFAYFFLNVPKYGWTYVLTYAGVIFVAYLVCGFLLAGLKSINLKTSLSFGKNSQ"
     gene            12544..13065
                     /gene="pyrR"
                     /locus_tag="U1404_000205"
     CDS             12544..13065
                     /gene="pyrR"
                     /locus_tag="U1404_000205"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEM5347196.1"
                     /translation="MKTKEIVDDMTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVF
                     IAKRIQERLKQLEGIDVPLGELDTKPFRDDMKVEDDTTNMTANVNDRDVILVDDVLYT
                     GRTIRAAIDNIVSLGRPARVSLAALVDRGHRELPIRADYVGKNIPTSRSEEIIVHMAE
                     IDGQDAVLLVEGA"
     gene            13121..14044
                     /locus_tag="U1404_000206"
     CDS             13121..14044
                     /locus_tag="U1404_000206"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002889464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEM5347197.1"
                     /translation="MTITNGKVSLKHLVTMETLSNEEVLGLIQRGIAFKRGEKVELDR
                     KYYASNLFFEDSTRTHKSFEMAELRLDMGMIDFDARTSSVNKGETLYDTILTMSALGV
                     DICVIRHSEVDYYKQLIDSPTIQTSIVNGGDGSGQHPSQSLLDLMTIYEEFGTFEGLK
                     IAIAGDITHSRVAKSNMQILKRLGAEIFFAGPEEWYAEEFDVYGQHLNIDDIVETVDV
                     LMLLRVQHERHDGDGGFSKETYNRLHGLTEERYKRLKDTAIVMHPAPVNRDVEIDDSL
                     VEAPKSRIVRQMQNGVFVRMAILEAIVNGKA"
     gene            14292..15371
                     /gene="carA"
                     /locus_tag="U1404_000207"
     CDS             14292..15371
                     /gene="carA"
                     /locus_tag="U1404_000207"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEM5347198.1"
                     /translation="MSKRRLILENGTIFEGEAFGADIDVTGELVFSTGMTGYQESITD
                     QSYNGQILTFTYPLVGNYGINRDDFESIKPTCKGVVVSEWARRASNWRNQMTLDEFLK
                     AKKIPAISGIDTRALTKIIRQHGTMKATLANVGDSVEHLTDQLRATVLPTNNIQQVST
                     KTAYPAPGVGRSVVLVDFGLKHSILRELAKRDCNVTVVPYDTTAEEILALNPDGVMLS
                     NGPGNPDDVPEALDMIRGILGKIPIFGICMGHQLFAKANGATTYKMKFGHRGFNHAVR
                     EIATGRVDFTSQNHGYAVAREDLPECLMITHEEINDKSVEGVRHKYYPGFSVQFHPDA
                     APGPHDASYLFDEFMELMDSFKKGQ"
     gene            15881..19060
                     /gene="carB"
                     /locus_tag="U1404_000208"
     CDS             15881..19060
                     /gene="carB"
                     /locus_tag="U1404_000208"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEM5347199.1"
                     /translation="MPKRTDIKKIMVIGSGPIVIGQAAEFDYAGTQACLALKEEGYSV
                     VLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTGLNMAMEL
                     SKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEALEFAA
                     EIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKEIEY
                     EVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIRALK
                     IEGGCNVQLALDSHSFKYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEM
                     VNPVTGTTYAMFEPALDYVVAKIPRFPFDKFEKGERRLGTQMKATGEVMAIGRNIEES
                     LLKACRSLEIGVYHNEMPELSQVTDDQLVEKIVKAQDDRLFYLSEALRRGYTVEELAQ
                     LTKIDLFFLDKLLHILEIEQELATNFDNIDLLKKAKKYGFADRKIAELWGRTESYIRQ
                     LRTEHKIVPVYKMVDTCAAEFESATPYFYSTYEWENESIRSEKESVLVLGSGPIRIGQ
                     GVEFDYATVHSVKAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDL
                     EKPKGVIVQFGGQTAINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQP
                     PGQTATNEEEALEAARKIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEH
                     PVLVDSYIVGRECEVDAISDGKDVLIPGIMEHIERAGVHSGDSMAVYPPQTLSKEVQA
                     TIADYTKRLAIGLDCIGMMNIQFVIKDETVYVIEVNPRASRTVPFLSKVTDIPMAQVA
                     TKLILGQSLAELGYQDGLYPESNQVHVKAPVFSFTKLAKVDSLLGPEMKSTGEIMGSD
                     LTLEKALYKAFEASYQHLAEFGNVVFTIADEDKEEVLGLAQRFYELGYGLLATAGTAA
                     FLTENGLAVTTVGKLGDDSRPDIPSLVRAGKVQAIINTVGKKRVADGDGQVIRSSAIE
                     GGIPLFTALDTAEAMVKVLESRSFMTQAI"
     gene            19124..19879
                     /locus_tag="U1404_000209"
     CDS             19124..19879
                     /locus_tag="U1404_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5347200.1"
                     /translation="MIVTTSLGMDEGLVYRARRIASELGIEYKERKKQSVGKMLGTYE
                     AVLVLYKDKLILEQRGGQVLFFHPDTAMLRIKSGRDPLLELLGKEKQSIIDCTMSLGS
                     DSIVLASAGHRVTALESSKLVHFIVSRGLQDFDSGLQEVNRAMKSIQTIWTDSLTYLK
                     EQKDKSVDVIYFDPMFSEEIKESQNLSGLSTLADRSRLTEEIVSEAKRVARKKLIIKA
                     HFRDQVFEEFGFKRHVRPNQKFHYGEIILEEEV"
     gene            19876..20523
                     /gene="pcp"
                     /locus_tag="U1404_000210"
     CDS             19876..20523
                     /gene="pcp"
                     /locus_tag="U1404_000210"
                     /EC_number="3.4.19.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyroglutamyl-peptidase I"
                     /protein_id="HEM5347201.1"
                     /translation="MKIIVTGFDPFGGESINPALETIKSLPKTIAGAEIILVEIPTVF
                     DKAADVLEEKMAEHLPDAVLCIGQAGGRVDLTPERIAINQDDARIPDNEGQRPIDRTI
                     REDGQPAYFSTLPIKAMVEAIHRIGLPASVSNTAGTFVCNHLMYQALYLAEKQFPKTK
                     AGFLHIPFLPEQVVDKPGLASMSLNDIVRGVEVAIGAIVEYRDKEDIKKGGGSTH"
     gene            20523..20831
                     /locus_tag="U1404_000211"
     CDS             20523..20831
                     /locus_tag="U1404_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HEM5347202.1"
                     /translation="MKNIMEARKRVEEMEKIFNRQLELNQSLSDNMAQLNQEQSTYLQ
                     LLDYYQSQTYMEDLDLSNKGYFNGIPCGVLSEDGVYNLLFDRTNLASQLRELADMLEQ
                     "
     gene            20956..21228
                     /gene="rpsP"
                     /locus_tag="U1404_000212"
     CDS             20956..21228
                     /gene="rpsP"
                     /locus_tag="U1404_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEM5347203.1"
                     /translation="MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLL
                     AENSVTLKEERVLEWLAKGAQPSDTVRSLLSNAGVLKKFHEQKFSK"
     gene            21250..21492
                     /locus_tag="U1404_000213"
     CDS             21250..21492
                     /locus_tag="U1404_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEM5347204.1"
                     /translation="MDMIENLIIAIVKPLISQPDSLTIKIVDTPEFLEYHLDLDQSDI
                     GRIIGRKGRTISAIRTIVYSVPTSDKKVRLVIDEKE"
     gene            21568..23304
                     /locus_tag="U1404_000214"
     CDS             21568..23304
                     /locus_tag="U1404_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347205.1"
                     /translation="MNLIWTYLKKYSKWIALDLLGAFLFVVVNLGLPTFLARMIDQGI
                     TKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKLTTNIVKDIRNDLYEKIQDYSHH
                     EYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
                     VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRF
                     AEVNEEYTDISKKLFNLTGLTEPLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFI
                     EYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNEEGITKSDTRGYLEF
                     ENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRIL
                     VDGVDVRRYNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAGLHDATDVAQAK
                     EFIESKEEKFDTHLAEGGSNLSGGQKQRLSIARAIVKQPDIYIFDDSFSALDYKTDAI
                     LRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNEIYREIA
                     NSQLNRQSLTEE"
     gene            23313..25082
                     /locus_tag="U1404_000215"
     CDS             23313..25082
                     /locus_tag="U1404_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347206.1"
                     /translation="MKNRSVFTRVWDYLRRYQSSVFLAIFLKTISAVMNALEPFVLGL
                     IITELTKNLLDIANGVEGAQINYSYIAIMLAIYALRALLYEIGAYGSNYFMTKAVQGA
                     TKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
                     LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLT
                     GFNVLKLYGREEISTEEFRQITADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLS
                     GLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSSLERIFSVLDELDEE
                     DANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLI
                     NLLMRFYDVTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDA
                     TDEEIVEAAKAANVDHFIRTLPGGYNMEMNQESSNISQGQKQLLTIARALLADPAILI
                     LDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGN
                     HESLLADKGFYYNLYQSQFSESK"
     gene            complement(25126..26049)
                     /locus_tag="U1404_000216"
     CDS             complement(25126..26049)
                     /locus_tag="U1404_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM5347207.1"
                     /translation="MKHSRRARRSRTQKKQLVPMLLGIALLVVTLLSIFLIFLKQPSK
                     QQSDSKASTVETTTTSSVMTSESSEVQTEIIWEQQTEPIKLPILMYHAIHVMAPEEEA
                     NANLIVDPTTFESHLKALQDAGYYTLSPEEAYKVLTENVLPAGKKVVWLTFDDSLWDF
                     YSYAYPLLKQYQMKATNNVITGFTEYGQAGYLTLDQIKEMQTAGLSFQGHTVNHPDLE
                     YSSIEDQTNELTSSKAYLDSQLNQETIAIAYPGGRYSADTVALTEQAGYKLGVTTNNG
                     LASASDGLLTLNRVRILPTTTAENLLAEIAY"
     gene            26154..27440
                     /locus_tag="U1404_000217"
     CDS             26154..27440
                     /locus_tag="U1404_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019782768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEM5347208.1"
                     /translation="MVVKIGLLGFGTVASGVPFLLEENQEKIEKAAHDSIEVAKVLVK
                     DEAEKDRLLAAGHDYHFVTNIDDILADEDIAIVVELMGRIEPAKTFITHALEAGKHIV
                     TANKDLLAVHGSELRALAEEKGLALYYEAAVAGGIPILRTLVNSLAADKVTRILGVLN
                     GTSNFMLTKMVDEGWTYEKALQTAQELGYAESDPTNDVEGIDAAYKAVILSQFAFGMT
                     VDFEHVAHKGISNITPEDVAVAQELGYVIKLVGDIQETTSGIAAEVSPTFLPKNHPLA
                     SVNGVMNAVFVESIGIGQSMYYGPGAGQKPTATSVMADIIRIVRRLKDNTIGKAFNEY
                     SRSLQLAAPSDVKSEYYFSIDAPDKNGKMLRLAEIFNSEEISFKQILQQAADGETARL
                     VIVTHEMSKTQLENVTDKLSKETDFTVLNTFKVLGE"
     gene            27444..28304
                     /locus_tag="U1404_000218"
     CDS             27444..28304
                     /locus_tag="U1404_000218"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEM5347209.1"
                     /translation="MKIIIPATSANIGPGFDSVGVALSKYLTIEVFEETDEWVIEHNL
                     EHVPSDKNNLLIKTALKIEKGLQPHRIRMISDIPLARGLGSSSSVIVAGIELANQLAG
                     LNMTADEKLLKATEIEGHPDNVAPAIFGNLVISSYVNKKVQAVVTEFPEASFVAFIPN
                     YPLRTVESRGVLPSQMGYKKAVAASAIANVAVASLMAGDLEKAGKAIQSDMFHEPFRQ
                     LLVKEFCPIKQTAQELGAYATYLSGAGPTVMVLAPKDREDAIVLALEELNLDGTVHRL
                     QVDTKGIAIV"
BASE COUNT         8061 a         5294 c         6615 g         8421 t
ORIGIN      
        1 ctgtaaatcc gctccttcgg gttcgggggt tcgaatccct ctctctccat tgaacaggat
       61 acaatggacg ttaagaaatc cgtatgaaaa taggaaactg acgtagtgtg ctaaacacac
      121 aaggaagttt atctttttta ctaggatttt agtccgtgtt caactaagat acgagagatg
      181 ttctggttta ttagaaattt ctgtagaaaa ttaggagact gacgctgaat gttaacactc
      241 aaggaaggct atctattttc ctaagaaatt aatctcgagt tcaatttctt gtgattagta
      301 aataaatgaa ttgtatctat tttttggggt atcgccaagc ggtaaggcaa gggactttga
      361 ctccctcatg cgttggttcg aatccagcta ccccagtaaa ggtactagat atagtctagt
      421 tcgtcaaaga tgtctaattg ttgttgtcct tgcgtgtgcc ttaaataaaa tatattttat
      481 gttgggtcga aagacctgat tgtcggaggt ttttttataa tgaacgaatt tgaagatttg
      541 ttgaacagtg taagcgaagt tacacctggt gatgtggtaa ctgcagaagt attgacagtt
      601 gatgctggtc aagcaaacgt agctatctca ggtactggtg ttgaaggcgt attgactctt
      661 cgtgagttga ctaacgaccg tgatgctgat atcaacgacc ttgtaaaagt tggtgaaaca
      721 cttgaattgt tagtacttcg ccaagttgtt ggtaaagata cagacactgt tacttatctt
      781 gtatctaaaa aacgtttgga agcacgtaaa gcatgggaca agcttgttgg tcgtgaagaa
      841 gaagttgtta cagttaaagt aactcgtgcc gttaaaggtg gtcttgcagt tgaatttgaa
      901 ggtcttcgtg gtttcatccc agcttcaatg atcgacagcc gtttcactcg taacactgaa
      961 cgttttgtag gtcaagaatt tgatgctaaa atcaaagaag ttgatcctgc tgagaaccgt
     1021 ttcatcttgt cacgtcgtga cgttgttgaa gcagaagctg cagctgcacg tgcggaagta
     1081 ttcggtaaat tggcagttgg tgaagttgta actggtaaag ttgcacgtat cacaagcttc
     1141 ggtgcattca tcgaccttgg tggtgtagat ggtttggtac acttgactga attgtctcac
     1201 gagcgtaacg tatctcctaa atcagctgta acagttggtg aagaagttga agttaaagtt
     1261 cttgcaatcg atgaagttga aggtcgcgta tcattgtcat tgaaagctac acagcctggt
     1321 ccatgggatg gcgttgagca aaaattggca gctggtgatg taatcgaagg taaagtaaaa
     1381 cgcttgactg acttcggtgc tttcgttgaa gtattgccag gtatcgatgg tttggtacac
     1441 atttcacaaa tttcacacaa acgtgttgaa aatccaaaag acgctttgtc agtaggtcaa
     1501 gaagtaactg ttaaagttct tgaagtgaac gcagctgatg agcgtgtatc actttctatc
     1561 aaagctttgg aagagcgtcc agcagcagtt gaaggtgaag aaaaagctga aaaacgtgct
     1621 ccacgtccac gtcgtcaaaa acgtgaagaa aaacgtgatt acgaattgcc agaaactcaa
     1681 tctggattct caatggctga ccttttcggt gacattgaat tgtaattcat ataaaaactt
     1741 gccttgtgca agtttttcct ttccaccctt agtgtaatgg atatcacgta agattccggt
     1801 tcttgagatg ggggttcgat tccctcaggg tggactaaat tgaaaagcct gcattaacag
     1861 gcttttttgt tatattatat caaggaggtt atgatatatt acattttgaa aatgactata
     1921 acaaaggtgc ccatcccgcc ttgctagaag ccttagttgc aagcaaccaa gaaggtttat
     1981 ctggatatgg cactgataaa tatactgaat ctgctatcga aaaaatcaga cttgctacgg
     2041 actgtcctca tgcacaagtt acgtttttag caggtggcac gcagaccaat caaattgtca
     2101 tttcgtctat gttagcttcc tatgaaggag tcattgcagc ggatactggt catattgcag
     2161 ttcatgaagc gggggcaatt gaatttacag gccataaggt gttggcctta ccgcatacgg
     2221 atggcaaact tgtcgcaagt gaagttgaga actatatttc cgatttctac gcagatgcta
     2281 atcatgctca catggttcat ccaggaatgg tttatatttc ccacccgact gaatatggta
     2341 caatttatag caaaacagag ctagaagatt tgtccaaagt ttgccaacag cataatattc
     2401 cgctcttttt agacggtgct cgcttgggtt atgggcttgc tgctcgtgaa acggatcttg
     2461 atttgaagac aattgcagag ctgacagatg ttttctacat tggtggtaca aaactcggtg
     2521 ccttgatggg ggaagctttg gtatttacaa agaacaacca gcctaagaat ttcgtatcga
     2581 ttgtcaaaca ccatggtgcc ttgttggcga aaggaagagt gacaggtgtc cagtttgatt
     2641 gcctatttac tgatgacttg tatcttaaat tggggcgtca tactatcgca atggcagagc
     2701 aactgaccca gattttggaa gagaagggct ttcaattcta tctcaaatcc ccgaccaatc
     2761 agcaatttgt tattgttaag aatgaagaat tgactagatt gacagaagct ggaattgcct
     2821 atggcttctg ggagaaatac gacgatagcc acagtatcat ccgctttgcg accagctggt
     2881 caactagtca agcggatatt gatgaattga taaatatatt atagcaatca aaaaagaaag
     2941 ggttagcctt tctttttagt ttgtaaataa tgatagcgat aaactgcata acgttcaata
     3001 aggctgtagc ctattcctcc tgcgattgca tgtacaatca gggcaatgtg caattctagt
     3061 ggtgctttta tagtgatacc aaatagaata ccgattacag tccatcctag tatcacccac
     3121 cataagtact taaatggagc atactgacca tcctggtctt taacttcact ggaaaccctg
     3181 attgaacaac cggtcaatac tcccatgggg agcaatgaac gagtatcaaa tggttctggt
     3241 aaaaatgacg ataagccgaa gatttgtata agcgcaaaaa tcagtagcca aacgaaaacc
     3301 ggcgttttta gaatgacgta tttcatattg cacacctcct gaaattagta tatcaaatcc
     3361 aagaaagtaa aacaaatatt tttgtgctat tgattagaag tcgtttcgga tgccccacta
     3421 gttacctctg tatcagtact ggtttctgtc cttgtctccg aagcttgggt agcagacgtt
     3481 tctgtagacg aggaagaggc agtagactct actgaagagc tggtctcggt ttgggttgag
     3541 gatgttgttt cggagcttga acttgttaaa tcttgtactc ctgttaacgg attgtcgctt
     3601 gatgattggc tgggactact agtggcgctg gatgatgaaa tggtagtact tggagatgtt
     3661 gaggatgttg taggttttgc tgtaaaggtg tagatagtga tgcaggcagt gataatccct
     3721 aaaatagacc cgataaaggt taaatatttt tgaaagttag ttaaaccagc cggtttttta
     3781 tttgtattct tacgtgtatt catgatgtac ctccaccttt agtttaagat aggaagttta
     3841 aaactatctt aaagattgcc gaaaggcatg aaaacatgat aaaataggac tattgcaata
     3901 aaaggaatat aaaaaatgat ttattttgat aatgcggcaa cgacacaggt ctatccagaa
     3961 gttctcaaga cctatacgga agtggcgaca aaaatctggg gaaacccctc tagcctccat
     4021 agtctaggca gtcaggcaac ccgtattttg gaagcatctc gcaagcaaat cgcagaatta
     4081 ctaggcaagg atagcaaaga aatctttttc acctcaggtg gtacggaagg tgacaactgg
     4141 gtcatcaagg gagtagcatt tgaaaaggca catctgggca agcacatcat cgtgtcagct
     4201 attgagcatc cagcggtaaa agagtctgca ctttggctca aaacgcaagg ttttgaggtg
     4261 gatttggctc cggtcaatgc ccaaggtttt gttgatgttt cagccttaga aagcttgatt
     4321 cgtccagata ccacactggt ttctatcatg gccgtcaata atgaaattgg tgctattcag
     4381 cccattcagg aaatctccca gctcttagct gataagccaa ccatctcctt ccatgtggat
     4441 gcagtgcagg caatcggcaa ggtgccaacg gaacggtatt tgacagaccg agttgatttt
     4501 gccagttttt caggtcacaa attccactct gtcagaggag taggtttcgt ctatgtcaaa
     4561 gctggcaaga aaatcgctcc gctattgaca gggggaggac aggaaagcga taaacgctca
     4621 acaactgaaa atgtggctgg tattgcagca acggctaagg cgctccgctt gaccttggac
     4681 aaggcggtag atagccagaa gaggctggcg gctatgaagc agattttggt ggatgaattg
     4741 ggcaaatacg acgatgtgac agttttttct gggctagagg actttgtgcc aagcatcgta
     4801 actttcggga ttaagaatat tcgtggcgag gtcattgtcc atgcctttga agaccaccag
     4861 atttacattt cgacaacctc agcctgctcg tctaaggctg gaaaaccagc tggaacactg
     4921 attgccatgg gtgttccgca gaagttggct caaactgccg tccgtatcag cttggatgat
     4981 gacaacgata tggggcaaat cgaacaattc ctcacgattt tcaaacaaat ttatcaaaac
     5041 acacagaaag taaggtagaa tgaactattc agaaattatg attcgctatg gcgaattgtc
     5101 aactaaaggg aaaaacaaga tgcggtttat taacaaactc cgcaataata tcaagcatgt
     5161 cctttctgtt tacccagaag tgaccgttta ttttgaccgt gaccgtggtc atgtctattt
     5221 gaatggggcg gattatcagg aagtttcagc ttcattgaag aagatttttg ggatccaaaa
     5281 tttcgcaccg tcttataaga ttgaaaagtc tgttccagct ttgaaagaag cggttgtgga
     5341 aataatgcag tccatttaca aggaagggat gaccttcaag attgctgcgc gtcgtagtga
     5401 ccacaatttt gaattggaca gccgtgacct taaccaagtc cttggagatg cagtttttac
     5461 agctattcca aatgtacagg tacagatgaa gtcaccagat attaccttac gagtggaaat
     5521 ccgtcctgat gctgcttata tttcccatga agaaatcaag ggggcaggcg gtctgccagt
     5581 tggtacatct ggcaagggta cgctgatgct atcaggtggt attgattcgc ctgttgcggg
     5641 ctatttagca ctgaaacgtg gggttgaaat cgaagccctg cactttgcaa gtccgcctta
     5701 tactagcccg ggtgcactta aaaaggccca tgatttgact cgtaaattga ctgcctttgg
     5761 tggtaatatc acctttatcg aagtgccgtt tacagaaatt caggaagaaa tcaaggaaaa
     5821 ggcacctgaa gcttatttga tgaccttgac acgccgcttc atgatgcgga ttacagaccg
     5881 agtacgggaa gagcgtggtg ctatggttat tatcaatggt gaaagtctag gacaagtggc
     5941 aagtcagacc ttggaatcca tgcaggctat caatgcggtg acaaatacac ctgttatccg
     6001 tccagtcgtt actatggaca agttggaaat cattgatatt gctcaagaaa ttgatacctt
     6061 tgatatttcc attcagccat ttgaggattg ctgtaccatc tttgctcctg accgtccaaa
     6121 aaccaaccct aaaatcaaaa atgtcgagca atacgaggct cgtatggatg ttgaaggctt
     6181 ggtggaacga gctgtggctg ggattatcgt aactgaaatc acaccgaaag aagaagtgaa
     6241 agacgaagtg gatagtttaa ttgaagactt actgtagaat tcaattgttt tggcatacat
     6301 ttaaatccag ctattgctgg attttttaat acgaatcgtt cggaaaaatc gaatttgtat
     6361 gatataataa gacttcagaa aaaaacaaag gagttattat gaaaaaagga gcactaacag
     6421 gattactcct gtttggtatg ttttttggtg caggaaactt gattttccca cctgcacttg
     6481 gtgtcttatc tggtgagaat ttctggcctg ctattttagg atttgtcgtt tcgggtgtcg
     6541 gtattgcagt cattgccctg atcgtcggta ccttaaaccc aaaaggttat gtacatgaga
     6601 tttctcgcaa gatttcaccg acttttgcaa cgatttatct tgttgccttg tatttggcta
     6661 tcggtccttt ctttgccatt ccgcgtacag caacaacgtc ctttgaaatt ggtattgcgc
     6721 cattgttggg cgaagcaaac cttggaattt ggttgttcgg ctttacagct ctttactttg
     6781 tggcagccta cctgattgcc ctcaatccat ctcaaatctt aaatagtatc ggacgtattt
     6841 taacccctgt ttttgcgatt ttgattgtga ttttggttgt gctgggtatc ttcaagtatg
     6901 gttcgactag tccactacca gcagcagaag cctattcagc tggacaggca tttggtacag
     6961 gatttattga aggatacaac acccttgatg cccttgcctc aattgccttt agtgttgtag
     7021 cggtgaatac cttaaaacac cttggtttct ccagcaaaaa ggaatatgta tctaccattt
     7081 ggtcagttgg tcttgttgta gccttagctt tctcagcact atatgtcggt ttggcatttc
     7141 ttggaaatca tttcccggta cctgctgatg tcttggcgtc cgataccaat aagggtgttt
     7201 atattctttc gcaagcaaca caggctattt ttggaccagg tgcacaaatt ttcttagctg
     7261 ccatggttat cgttacttgc tttacgacaa cggctggctt gattgtttct tcaggtgaat
     7321 ttttcgctga gcgtttccca cgttttagct acaaagtata tgcgacaatt tttactttga
     7381 ttggctttgg gattgccaac ctcggtttga acaatatcat caccttctca gttccagttc
     7441 ttttggttct ctatccaatt actatctgta ttgtcttgat tgccattgtt aacaaatttg
     7501 taccgctttc cacttatggt atgcaattaa ctgtgggagt agtgacagct ttgtcattgg
     7561 tagaagtgtt agcaggacaa ttcaactgga ctgctatttc aaaaatcatc tcagctctgc
     7621 cattggcagg acaatcatta gcatggttat taccagctct tgtcggaatc gtcctctctc
     7681 tattcttacc aaacaagcag gagagcgaag ttttcgaaat gtaagaaaaa tgatacaaaa
     7741 cacttgcatt tgcaggtgtt tttgttataa taggactgtt gactatgcac acatcctgtg
     7801 caaccgcacg aatgccgttc tttcgttgag agtagagtaa gtggttcgtc ccacggtact
     7861 aggcgagtct tcacatcaaa ttcgggcaag acccaaaaat cataggaggt gcataatgag
     7921 cacatatgca atcattaaaa ctggcggcaa acaagttaaa gttgaagtcg gtcaagctat
     7981 ctacgttgaa aaattgaacg ttgaagcagg tcaagaagtt actttcgaag aagtagttct
     8041 tgttggtggt gagaaaactg ttgtgggtac tccactcgta gcaggcgcta ctgttgttgg
     8101 tactgttgaa aaacaaggta aacagaaaaa agttgttacc ttcaagtaca aacctaaaaa
     8161 aggtagccac cgcaaacaag gtcaccgtca accttacaca aaagttgtta tcaacgctat
     8221 caacgcttaa tcgcgtagct tgaagcaatc attacagaaa ttcggaggaa taacatatgt
     8281 taaacttgaa tcttgctaac ttgcaattta tggcccacaa aaaaggtgga ggttcaacgt
     8341 caaacggtcg tgattcacaa gcgaaacgcc ttggtgcgaa agctgctgac ggccaaactg
     8401 tatcaggtgg ttcaatcctt taccgccaac gtggtacaaa aatctaccca ggagctaacg
     8461 taggtcgtgg tggagatgac actctttacg ctaaagtaga aggcgttgta cgcttcgaac
     8521 gtaaaggtcg cgataagaaa caagtatctg tttacccaat cgcaaaataa gtctgaaaat
     8581 ggctttacaa taggctttcc gagttgtttt cggagagtct tttttgtaat ttgattttgc
     8641 tatttttaaa agtgtacgat agaagtgatt taagacggca atatcttctc tataggataa
     8701 aaatattttg ccatctgcac tgttgcgctg cctataagtt ctacgttcag tagtagatga
     8761 aatgttcaga ggaagtggta tgggttccaa cttagtaaaa ttagtcattg atgatttggc
     8821 gaacagaaat tccaaagcct ttcaaattgc agttgaagaa gaggatttgg gaacctggaa
     8881 gttatataag agaagaatag tctatttgtg aaaacgcaag agttcagcaa attcttgctt
     8941 tttttgatat aatggtagaa gcagttttaa gaggtatcag gtatgaatat tcaacaatta
     9001 cgctacgttg tagccattgc caacagtggt acttttcggg aagcagcaga gaaaatgtac
     9061 gtttcccagc ctagtttgtc catttccatt cgtgatttgg aaaaagagtt aggttttcaa
     9121 atttttagcc gaactagttc aggaactttt ttgacacaaa aagggatgga attctatgag
     9181 aaagctcagg ctttagttaa gggatttgat cagtttgagc atctctattt gcaacctgag
     9241 gaaggtgaga agactttttc aatttcaagt cagcattatg attttcttcc cccgttgatt
     9301 acggagttct ctcgtagcca cccgcagtac cctcattttc gcatttttga atcgactaca
     9361 gtacagattt tagatgaggt tgctcaaggt tatagcgagc ttggtattat ttatttgaac
     9421 gagagaaata caaaaggaat catgcagaaa ttggataaac ttcacttgca agctgtggat
     9481 ttgtctgcat ttcagactca tatctacctt cgtgaagatc atcctttgac aaagaaagct
     9541 gaggttgatc cggcagattt ggtaggtcta cctaccgtac ggttcactca agaaaaagag
     9601 gcttatcttt attattccga gaacttgatt gatacgtcgg attcctcggt tgtgtttgat
     9661 gtgacagacc gtgcgacttt gaatggaatt ttggagcgta cggatgccta tgcaactggt
     9721 tcgggctatc ttgatgacga gagtgtcaat ggcattaccg taattcctct caaaggaaag
     9781 gtagacaatc gcatggtcta cgttaaacga gctaatgatg aacttagttc ttgtgccaaa
     9841 gactttattg aaaccatgca ggcatatttt gataagaaga aggatgaaaa tgcgtaaaat
     9901 tggatttcca tttttgatgg tagtattaat tggtttggac cagtttgtaa aagcttggac
     9961 agttgccaat attgaattag acacggttga gccacttctt ccgggggtta taagtttggc
    10021 ctatttacga aattatggtg cagcctggtc catcttacaa aatcagcagt ggtttttcac
    10081 gataatgaca attgttgctg tgacaggcct agtgtggtac tatatcaaac agatcaaggg
    10141 caatatctgg actttattca gtctgtcttt gatgattgct ggtgctcttg ggaattttat
    10201 tgatcgtctt agattgggat atgtggtgga catgtttcac ttggatttca ttagtttccc
    10261 tgtatttaat gtagcagatg tttgtctgac agttggtgta ggtattttat ttatttgtat
    10321 tatgaaagaa gagagtaatg gaagtaagag ttgaggttgg tggtattcgt ttggataagg
    10381 cattgtcgga tttgacggat ttgtctcgtt cggttgcaaa tgagcagatt aaggctggtc
    10441 agattttggt caatggacag cctaaaaaag ctaaatatag tgtgcaggtt ggggatgtcc
    10501 taacctatca aattccagaa gtagaagaaa tcgactatgt tgctgaggat attcctttag
    10561 agattgtctt tcaggacgag gatgttgctg ttgtaaataa accacaaggg atggtcgttc
    10621 atccgtcggc tggtcacacg tctgggacgc tagttaatgc tctcctttat cacgtaaaag
    10681 atttgtcagg catcaatggt gtcttgcgac caggtattgt ccatcggatt gacaaggaca
    10741 catctggctt gctcatgatt gctaaaaacg atgatgccca tacaaagctt gctgctgaat
    10801 tgaaagataa gaaatccctt cgtaagtatt gggccattgt acacggcaat ctaccaaacg
    10861 atcgcggagt aattgaggcg ccgattggtc gttctgaaaa agaccgcaag aaacaagcgg
    10921 tgactgccaa agggaaagaa gcggtgacac gttttcaggt tttggagcgt tttggtgact
    10981 acactttggt ggaattgacc ttggaaacag gacgaactca ccaaattcgt gtccacatgg
    11041 cttatattgg tcatccggtt gcgggtgatg aagcttacgg cccaaggaaa acactaaaag
    11101 ggcatggcca atttcttcat gccagaacgc ttggatttac ccatccgaga actggtgagg
    11161 ttgttgaatt tacggcagaa gcgccagcta tttttcagga ggcacttgaa aaactgcgca
    11221 aggctgaata atagtatgaa aaccttatca tcttgcccat tttttcaaca aatgctatac
    11281 tagaacatga aaaatgttaa ggagagtaag aatggaaact ttaccaaatt gtccaaaatg
    11341 taattctgaa tatgtctatg aagacggtgc cctcttggtt tgccctgagt gtgcatacga
    11401 atggaaccca gcagatgtag ctgaggaaga aagtggacct gttgcaattg atgctaacgg
    11461 taatcgtttg gcggacggcg atactgtgac gcttatcaaa gacttgaaag tgaaaggtgc
    11521 gcctaaggac cttaaacaag gtacacgtgt taaaggcatc cgtatcgttg aaggcgatca
    11581 caatattgat tgtaaaatcg atggttttgg tgccatgaag ttgaaatctg aatttgttaa
    11641 gaaaatctaa gagagaggac tggttaacca gtcttttcct gtttttgaaa ggatattatg
    11701 aaacatcaaa gtattttgtt ttacagtaga tgcctgttag ccattttagc catcacaggt
    11761 accgccttag aaatcattaa atatggtatc gggatgctca tgtattatac ggtacaatct
    11821 aatttattag tatctctgtt cgctgtctat atggtctatg ccatgagtaa gggtgtggat
    11881 ttacagacgt cacattttct tcggataaag gctgctgtaa ccatgtctat catgattacc
    11941 tgtgtagtct atcactttat gttggcacct ttggcagacg atttctggcg acttgaaaat
    12001 ctgctctgcc attatattgt tcccttatat tttttgttag ataccctaat agtagatcgt
    12061 cagcaacagt acaagtggtt tgacccgatt tggtggacgc ttctgcctgt tctctacatg
    12121 atttttggtc tagtgaatgg tcttttcata aaaattccaa tcccagatgc taaggacagt
    12181 ccttttgctt atttctttct caatgtccct aagtatggtt ggacctatgt tttgacttat
    12241 gctggagtca tctttgtcgc ctatctagtc tgcggttttc tattggcggg actaaaatcc
    12301 ataaacctta agacttcatt gtcttttgga aaaaattctc agtaaaatcc gataatttct
    12361 atattttttc agaaaaaaat tgtcaaggct gagattttat gctatactct gcttaataaa
    12421 tcctttaaaa cctgtccaga gaggcagaca aggagtcgga tgttaagcag gttggttcta
    12481 actagcctat attttcatag tctccttgta taaggagact ttttctatac ttttggaggt
    12541 cttatgaaga caaaagaaat cgttgacgat atgactatga aacgggcaat cacccgcatc
    12601 acttatgaaa ttatcgaacg gaataagaat ttggataata ttgtccttgc agggattaaa
    12661 acacggggtg ttttcattgc aaagaggatt caggagagac ttaagcaatt agagggtatc
    12721 gacgttccgt tgggagagtt ggataccaag ccgtttcgag atgacatgaa ggtagaagat
    12781 gatacgacaa atatgactgc caatgtcaat gatcgtgatg taatattagt agatgatgtg
    12841 ctttatacag gacgaactat tcgtgctgct attgacaaca tagtgtcctt gggccgtcca
    12901 gctcgtgtta gtttagcggc acttgtggat cgtggacaca gggagttgcc tattcgagca
    12961 gattatgttg gtaagaatat cccaactagc cgttctgaag aaatcattgt gcacatggct
    13021 gaaatcgatg gtcaagacgc tgtccttctg gttgaaggtg catagtcgct tcgtttacaa
    13081 attctcattc tacatctaga tcataaaggt aggtatcatc atgacaatta caaatggtaa
    13141 agtttcactc aaacacttgg ttacaatgga gaccctctca aatgaagaag tattgggact
    13201 cattcaacgt ggtattgctt ttaaacgcgg tgaaaaggta gagttggatc ggaagtacta
    13261 tgcttctaac cttttctttg aggattcaac tcggacgcat aagtcttttg aaatggcaga
    13321 gcttcgtttg gatatgggaa tgattgactt tgatgctcgt accagctcag tcaataaggg
    13381 tgaaaccttg tatgatacca ttttgaccat gtcagcactt ggggtagaca tctgcgtgat
    13441 tcgtcactcg gaagtggatt attacaagca attgattgat agtcctacca ttcagacttc
    13501 aattgtcaat ggtggtgatg gttcaggtca acacccaagc caatccctac ttgatttgat
    13561 gactatttat gaagaatttg gaacttttga aggcttgaag attgccattg caggtgatat
    13621 tacacactca cgggttgcta agtccaatat gcaaattttg aaacgtctgg gagctgagat
    13681 tttctttgct ggaccggagg aatggtacgc agaggaattt gatgtctatg gtcagcattt
    13741 gaatattgat gatattgtgg aaacggtaga tgtactgatg ttgctccgtg tgcaacacga
    13801 gcgtcatgat ggtgatggtg gcttttctaa agaaacttat aaccgtttgc atggtttaac
    13861 agaggagcgc tacaaacgct tgaaagatac tgcaattgtt atgcatccgg ctcctgttaa
    13921 ccgtgatgtt gagattgatg attctctagt tgaagcaccc aaatcacgta ttgtccgtca
    13981 aatgcagaat ggtgtatttg tccggatggc gattttggaa gcaattgtca atggcaaggc
    14041 ttaaaagtaa gctgttcaga taccttagaa ctgagcagtt agaaatttgt tagacttatc
    14101 ttatttaatg tcgcccagag aggcgacgaa tagaaaggag aaggtacagg ttcgagtaag
    14161 atttgatttt tatattcgaa cacgccctaa ggactgtgtg aaaaagataa atatcgactt
    14221 gacgcctata gcgtcggcgc cgaatttcct attttcactt tgtcctttta acgggctttg
    14281 tatcatagat tatgtcaaaa agacgtttaa ttttggaaaa tggcactatt tttgaggggg
    14341 aggccttcgg tgctgatatt gatgtgactg gtgagttggt tttctcaact gggatgacag
    14401 gttatcagga atccatcacg gaccagtctt ataatggtca gattttaacc tttacctatc
    14461 ccttggtagg aaattacggg attaaccgtg atgatttcga gtcgatcaaa ccgacttgta
    14521 agggagtggt tgttagcgag tgggctcgtc gagcaagtaa ttggcgtaac cagatgactt
    14581 tggatgaatt tttaaaggct aagaaaattc cagcaatttc tggaattgac acacgcgccc
    14641 taactaaaat tattcgtcag cacgggacca tgaaggcgac attggcaaat gttggtgatt
    14701 ccgttgagca tttgacagac cagttgagag cgactgtttt gccaaccaac aacatccagc
    14761 aagtatcgac aaaaacagcc tatcctgcac ctggagttgg acgtagtgtt gttttggttg
    14821 attttggatt gaaacattct attcttagag agttagccaa gcgtgattgc aatgtgacag
    14881 ttgtccctta tgatacgact gctgaagaaa ttcttgccct caatccagac ggtgtcatgc
    14941 tttcaaacgg tcctggtaac ccagatgatg ttccagaagc tttggacatg attcggggca
    15001 ttctcggaaa aattccaatt tttggtatct gtatggggca ccaactcttt gctaaagcaa
    15061 atggggcaac gacttataaa atgaagtttg gtcaccgtgg tttcaaccat gctgttcgtg
    15121 aaattgcgac aggtcgagtg gactttacca gtcagaacca cggttatgca gtggctcgtg
    15181 aagatttacc tgaatgttta atgattactc atgaagaaat caatgacaaa tcagtagaag
    15241 gggtacgcca caagtactat ccaggtttct ctgttcaatt ccacccagat gctgcacctg
    15301 gtccacatga tgccagctat ttgtttgacg aatttatgga attgatggat tcgtttaaaa
    15361 aagggcagta aggtttaact aatatcgtgc taaactttac tgcgtcggtc agagcaagtc
    15421 ggacttcatg ttaacgcatg tgtcttccta cgcaaagtcc aatgggacct ttgctaactc
    15481 tgacactagt ttagaatttc aattattatc gaattgggat tctaaacgtc ggacttatct
    15541 tatttaatgt cgctcagaga ggcgacgaat agaaaggcaa gggacagatc aatggttgcg
    15601 agcaactcat ttccctacgc ctgcctctat ggaggtcagg ctatcccttg cactagctcg
    15661 aaaatggatt aatgtcgaat ccattttctc acgtcggaca attatttaat tctatccgga
    15721 gagatagaaa atagaaagga gagatacagg ttcgagtttc ctattcgaac acgccctaag
    15781 gactgtgcga aaaagataaa tgtcgtcttg atgcttgaag catcagtgtc gtgtttccta
    15841 ttttcgcttt gtcctcttaa cgggctttgt atcatacatt atgccaaaac gtacggatat
    15901 taagaaaata atggtgattg ggtctggtcc gattgtgatt ggtcaggctg cggagtttga
    15961 ttatgctggg actcaggctt gtttagcctt gaaggaagaa ggttacagtg tggtcttggt
    16021 caattcaaac cctgcgacca ttatgacaga caaggaaata gcagacaagg tttatattga
    16081 gccaattacg cttgaatttg tcacacggat tttacggaag gagcgtccag atgctctctt
    16141 gccaactctt ggtggtcaga ctggtctcaa catggccatg gaattgtcta aggctggtat
    16201 tttagatgag cttggagttg agttgttggg aactaaactg tctgcaattg atcaggcaga
    16261 ggaccgcgac ctcttcaaac aactcatgga agatctcaat cagcctattc ctgagtcaac
    16321 gattgtgaca acagttgatg aggctttgga atttgctgct gaaattggct atcctgtcat
    16381 tgttcgacca gccttcacgc tgggtggtac tggcggtggt atgtgtgcca atgaagaaga
    16441 actacgtgaa atagcagaaa atggtctaaa attgtcacca gtgactcagt gtttgattga
    16501 gcgttccatt gctggtttca aagaaattga atacgaagtg atgcgggatg cggctgacaa
    16561 tgccttggtc gtatgtaaca tggaaaactt tgaccctgtg ggaattcata caggagattc
    16621 tatcgtattt gccccaacgc agacgctttc ggatattgaa aaccagatgt tgcgtgatgc
    16681 cagtctcagc attattcgtg ctctcaaaat cgagggtggg tgtaatgtgc agttggcttt
    16741 ggattctcat agcttcaaat actatgtcat cgaagtcaat cctcgtgtat cgcgttcctc
    16801 tgccttggca tccaaagcga caggttatcc tattgccaaa ttggcagcaa aaattgcggt
    16861 tggcttgacc ttggatgaaa tggtgaaccc tgttacagga acaacctatg ccatgtttga
    16921 gcctgctctt gactacgttg tggcaaaaat tccacgtttc ccatttgata agtttgaaaa
    16981 aggggagcgt cgccttggaa cgcagatgaa ggcaactgga gaggtcatgg ccattgggcg
    17041 taatatcgaa gaaagtctgc tcaaggcctg ccgttctttg gaaatcgggg tataccacaa
    17101 tgaaatgcct gaactcagcc aagtgacaga tgaccaattg gttgaaaaga ttgtcaaggc
    17161 acaggatgat cgtttattct atctttcaga agcccttcga cgtggttata cagtagaaga
    17221 actagctcaa ttgacgaaga ttgatctttt cttccttgat aagctgcttc atatcttaga
    17281 aatcgagcag gaattggcaa cgaattttga taatattgat ttattgaaaa aagccaagaa
    17341 atacggtttt gcagaccgca agattgcgga actctgggga cggacagaat cctacattcg
    17401 tcaactgcgg acagaacaca agattgtccc tgtttacaag atggtagata cttgtgcggc
    17461 tgagtttgaa agtgctacac cttatttcta ttcaacttat gagtgggaaa atgagtccat
    17521 ccgttcggag aaagaatctg ttttggtgct gggttctggt ccaattcgta tcggacaggg
    17581 tgtggagttt gactatgcga cggtacattc tgtcaaggcc attcaggcag ctggctacga
    17641 agccatcatt atgaactcaa accctgaaac tgtgtcaact gacttttcgg tttcggacaa
    17701 gctttacttc gagccgttaa ccttggaaga tgttttgaat gtgatcgacc ttgagaaacc
    17761 aaaaggggtt atcgttcagt tcggtggcca gacggctatc aatttggcag agccattggc
    17821 caaagcaggt attccaatct tgggtacgca agtagcggat ttggatagag ctgaagacag
    17881 ggatttattt gaaaaagccc tgaaagacct aggaattcca cagccaccag gtcaaaccgc
    17941 aaccaacgaa gaggaagctc ttgaagcggc ccgcaaaatt ggtttcccgg tacttgttcg
    18001 tccctcttat gtcttgggcg gtcgtgctat ggagattgtc gaaaatgaag aggacttacg
    18061 ttcttatatg agaactgcgg tcaaggcttc gccagagcac ccagttttgg tggattctta
    18121 catcgtcggt cgtgagtgtg aagtggatgc tatttcagat ggtaaggatg tcttgattcc
    18181 aggtattatg gagcatatcg agcgcgctgg ggttcactca ggtgactcga tggccgttta
    18241 cccgccacaa accttgtcca aagaagtgca ggcaaccatt gcagactaca ccaaacgctt
    18301 ggcaatcggt ctcgactgta tcggtatgat gaatatccag tttgtcatca aggatgaaac
    18361 ggtctatgtg attgaggtca atccgcgtgc cagtcgtacg gtgccattct tgtccaaagt
    18421 cacagacatt ccaatggctc aggttgcaac caaattgatt ttgggacaaa gccttgcgga
    18481 acttggctac caagacggtc tttatcctga gagcaaccaa gtgcacgtca aggcaccggt
    18541 cttctcgttc acgaaactag ctaaagttga cagtttgtta ggaccagaga tgaagtcaac
    18601 cggtgagatt atggggtcag acttgacact ggaaaaagcg ctttataagg ctttcgaggc
    18661 aagttatcag cacctggctg agtttggcaa cgttgtcttt accattgcgg atgaagacaa
    18721 ggaagaagtg cttggtctgg ctcaacgttt ctatgaactt ggttatggcc tactggctac
    18781 ggcaggaaca gccgcctttc taacagaaaa tggacttgct gtaacaactg ttggtaaatt
    18841 aggcgatgat tcccgtccag atattcctag tcttgttcgg gcaggtaagg ttcaggctat
    18901 tatcaatacg gttgggaaaa aacgggtggc agatggtgac ggtcaagtca ttcgaagctc
    18961 tgctattgaa ggaggaattc cgctctttac ggccctcgat acagcagaag ctatggtcaa
    19021 agtgctggag agccgtagct tcatgacaca ggctatatag aagatactat caggatgagc
    19081 tttgagttcg tcctgatttt ttgatatact gaagagtatg aaaatgattg taacaactag
    19141 tcttgggatg gatgaggggc tggtctatag ggctagacgg attgccagtg aactgggaat
    19201 tgaatacaag gaaagaaaga agcagtcggt tggaaaaatg ttaggtacct acgaggctgt
    19261 cttggttctt tataaggata aattgatact agagcagagg ggtgggcagg ttttattttt
    19321 ccacccagat actgccatgt tgcggattaa gtctggaaga gatccgcttt tagaattact
    19381 tggaaaagaa aaacaatcaa taatagactg tactatgagc ttgggatctg atagcattgt
    19441 gttagcaagt gccggtcatc gggtaacagc cttggaaagt tctaagctag tgcactttat
    19501 tgtgagtcga ggtttacagg attttgatag tgggctgcaa gaggtcaatc gagccatgaa
    19561 atctatccag acaatttgga cagatagttt gacttatttg aaagagcaaa aagataagtc
    19621 tgttgatgtc atttactttg atcccatgtt ttcggaagaa atcaaggaat cacaaaatct
    19681 ttctggcttg tctactttgg ctgacagaag tcgtttaacg gaggaaattg tatctgaggc
    19741 taaacgagta gctaggaaga aattgattat aaaggctcat tttcgagatc aggtctttga
    19801 agaatttggc tttaaacgtc atgtcagacc caatcaaaaa tttcactacg gagaaattat
    19861 tttggaggag gaagtatgaa aatcatcgta acaggctttg atccctttgg tggcgagtct
    19921 attaacccag ccttggaaac aatcaaatct ctacctaaga ccattgctgg tgcagagatt
    19981 attcttgtag agattccgac tgtttttgac aaggctgcgg atgttttaga ggagaaaatg
    20041 gcagaacatt tacctgatgc ggtactatgt attggtcagg ctggtgggcg agttgattta
    20101 actcctgagc gtatagccat taaccaagat gatgcacgca ttccagacaa tgaagggcag
    20161 cggccgattg atagaacgat tcgagaagat ggtcagcctg cttatttctc caccttaccc
    20221 atcaaagcaa tggttgaagc tattcatagg attgggcttc cagcttctgt ttctaatact
    20281 gctgggacct ttgtctgcaa tcatctcatg tatcaagctc tttacttggc ggagaaacaa
    20341 tttccaaaga ctaaggcagg ctttctccat attcccttct tgccagagca ggttgtcgac
    20401 aagcctggac tagcttccat gtctttgaac gatattgtaa gaggagttga agtagctata
    20461 ggagcgattg ttgaatatag ggataaagag gatattaaaa agggtggtgg cagtacacac
    20521 tgatgaaaaa tattatggaa gcaagaaaac gtgtagagga aatggaaaaa atatttaaca
    20581 gacagctaga gctgaaccag tccctttccg ataatatggc acaacttaac caggaacaat
    20641 cgacttattt acaattatta gattattacc agagccagac ctatatggaa gatcttgatt
    20701 tatctaataa gggttatttc aatggtattc cttgcggagt attgagtgaa gatggagtct
    20761 ataatttact gtttgaccgt acaaatctag caagtcaact gagagaacta gcagatatgc
    20821 tcgaacaata aattttttta aaacctgtca agtttttttc ttgacaccct gtcaaagtgt
    20881 ggtataatag aacatgtgct aaatagctct gctatttcac cgaataaaaa tacaaagaaa
    20941 agagaacatt taaaaatggc agtaaaaatc cgtttgactc gtatgggttc taaaaagaaa
    21001 cctttctacc gtatcaacgt tgcagactca cgtgcaccac gtgatggtcg tttcatcgaa
    21061 actgttggta cttacaaccc acttttggct gaaaactcag taactcttaa agaagagcgt
    21121 gtacttgagt ggttggcaaa aggtgcacaa ccatctgata cagttcgtag ccttctttca
    21181 aacgctggcg tattgaagaa attccacgaa caaaaattct ctaagtaaga acagtaagcg
    21241 agaacactta tggacatgat tgaaaatctc attattgcga ttgtgaaacc tttgatttca
    21301 cagcctgata gcttgacaat aaaaattgtt gatacacctg aattcttgga atatcatttg
    21361 gatttggatc aatctgatat tggacgtatc attggtagaa aaggacgcac aatttctgca
    21421 atcagaacga ttgtctattc tgttccaaca agtgataaaa aagttcgttt agtgatcgac
    21481 gagaaagaat agaaagtcac cgtttggtgg cttttaacgt tgacaaaggg gcctagcccc
    21541 tttttaacat atagaaagga agaaatgatg aatctgattt ggacctattt gaaaaaatat
    21601 tctaagtgga ttgccttaga cttgttgggg gccttcttat ttgtagtggt aaacttaggc
    21661 ttgccgactt ttttggctag gatgattgac caaggaatta caaagaacga tgttagtcag
    21721 ctctatttct gggcggggat gatgggattg attgtcctgc tcgggattgt tggtcgagtg
    21781 acacttgcct atgcagctgg aaaattgact accaatatcg tcaaagatat tcgaaatgat
    21841 ctgtatgaga aaattcagga ctattctcat catgaatatg agcagattgg tgtttcttct
    21901 ctagttgctc gtatgacaaa tgatgctttt gttctcatgc aattctctga aatggtcttg
    21961 aaactaggta ttattacacc cttgatgatg attgcttctg tcattatgac cttggtaacc
    22021 agtccgagct tggcttggac agtagcagta gccatgccgt ttctagtttt tgttattttc
    22081 tatgtggcaa caaaaactcg tcctctctct gaaaaacaac agaaacgatt ggatactatc
    22141 aaccagtatg ttcgtgaaaa tctcatgggt ttgcgggtca ttcgtgcctt tacacgtgaa
    22201 gagttccaag aaaatcgttt tgcagaggtc aatgaggaat ataccgatat ttccaaaaag
    22261 ctctttaatc tgactggatt gacagagcct ctctttgtcc agattatcat tgctatgatt
    22321 gtggccattg tctggtttgc tttggatccc ttgaaaacag gcagtctaca aatcggtgat
    22381 ttagtagcct ttatcgaata tagtttccac gcgcttttct ctttcttgct ctttgctaac
    22441 ttgtttaaca tgtatccacg tatgtcggta tcgagccaac gaattcagaa agtcttggac
    22501 atgcccattt ccatttctaa gaatgaagaa ggtattacta aatcagatac tcgtggttat
    22561 ttggaatttg aaaatgtaac ttttgcctat cctggtgaaa cggaatcgcc tgttctccac
    22621 aatatttcat ttaaggctaa gcctggtgaa acgattgcct ttattggttc aacaggttct
    22681 ggtaagtctt ccttggtcaa cttgattcca cgtttctatg atgtgacact tggtcgtatc
    22741 ttggtggatg gtgtggatgt cagacgctac aatctgaagg cactccgcag caagattggc
    22801 tttattccac agaaagctct gctatttacc ggaactatcg cggaaaactt aaagtacggt
    22861 aagatggatg ctagtcttgc tggacttcat gatgcgacag atgtggctca ggctaaggag
    22921 tttatcgaga gtaaggaaga aaaattcgac acccacttgg ctgagggcgg aagcaacctg
    22981 tcaggcgggc aaaagcaacg tttgtccatt gcacgtgcta ttgtcaagca gccggatatt
    23041 tacatttttg atgattcttt ctcagccttg gattataaga cggatgcaat tttgcggagt
    23101 cgtttgaagg aagtgacgga aaatgcgacg gtgctaattg tggctcaacg tgtcggaacc
    23161 attatggatg ctgaccagat tatcgtgctg aacgaaggtg aaatcgttgg ccgcggcacc
    23221 cacaatgaat tgatggaaag caatgagatt taccgagaaa ttgccaactc tcaacttaac
    23281 cgtcaatcgt taacagaaga ataggaggaa ttatgaagaa tagatcagta tttacccgtg
    23341 tttgggacta tttgcgtcgt taccaatctt ctgtattttt agccattttt ctaaagacca
    23401 tcagtgcagt tatgaatgcc ttagaaccct ttgtgctggg gcttatcatt acagaattga
    23461 ccaagaattt gttggatatt gctaatggag tagaaggagc gcagattaac tattcctaca
    23521 ttgccatcat gcttgccatc tatgcccttc gcgcccttct atatgaaatc ggtgcctacg
    23581 gttctaacta ttttatgacc aaggcagtgc agggagcaac taaggaacta cgtcaggatt
    23641 tgagccacaa aattaacaag attccagtat cttattttga caagcaccag tatggtgatt
    23701 tactcggacg ttttacaagc gatgtggaga ctgtttcaaa cgccctgcaa caaagttttc
    23761 tccagctagt caatgccgtt ctgaccctct ctctagccat tttcatgtgt ttctggttgg
    23821 atgtatccct agcacttgta gtcataacct tggttccagt gacctatttt ggttctaagt
    23881 ttgtcatggg caaatcccag ccatatttca agcagcaggc tgatgcccta ggtcgtttga
    23941 acggctttgt ccaagaaaat ctgactggtt ttaacgttct caaactctac ggccgtgaag
    24001 aaatttctac agaagagttt cgccagatta ccgcagattt gcaggaagtt ggtttcaagg
    24061 ctagtttcat gtctggtttg ctcatgcctc tagttcacgg cttctcaaac atcgcctacg
    24121 ttgtcgtcgc cctgctatct ggattgaaag ttcttgcagg tacattgacg gtgggtaata
    24181 tgcaggcctt cgtccaatac gtctggcaga tttctcagcc agtccaaacc ttgacccaat
    24241 tggcaccaca gttgcagtct gccaaatctt cccttgaacg catcttttca gtcctagatg
    24301 agcttgatga agaagacgcc aatgcgctgg agttgacaga aagtctgaca ggacaagtca
    24361 gctttgaaca ggtcgaattt ggctattcag aagacaagcc gcttatccgt aactttaatc
    24421 ttgatgttaa gccaggtgaa atggttgcta tcgttggacc aacgggggca ggtaagacaa
    24481 cccttatcaa cttgctcatg cgtttctatg atgtcacatc aggtgctatc aaggtagatg
    24541 ggcaggatat tcgaaatctt tcacgtcaat cctaccgtag tcaatttggc atggtcttgc
    24601 aggatgcttg gctctatgaa gggaccatca aggaaaacct gcgttttgga cgtctggatg
    24661 cgacggatga ggaaattgtg gaggctgcta aagctgccaa cgttgaccat tttatccgta
    24721 ccctgcctgg tggttataat atggaaatga accaggaatc cagcaatatt tcccaaggtc
    24781 agaaacagct tttgaccatt gcgcgtgcct tgttggcgga tcctgctatt ctgattcttg
    24841 acgaagcgac ttcttcagtt gatacccgtt tggaactctt gattcaaaag gctatgaaac
    24901 ggttgatgaa agggcggaca agtttcgtca tcgctcatcg cttatctacc attcaggaag
    24961 ctgataagat tttggtcttg aaagatggac agattatcga acaaggtaac catgaaagtc
    25021 ttttggcaga caaaggtttc tattataatc tttatcaaag ccagtttagt gaatccaaat
    25081 aaaaaaacga actcccttgt cagtgaagac aggggagttt agtgtttaat aggcgatttc
    25141 agctagtaga ttttctgcgg tggtggtcgg tagaattcga acacgattga gagtcagtaa
    25201 tccgtcacta gcagaagcca agccgttgtt agtagtcaca ccaagtttgt agccagcttg
    25261 ttcagttaag gctactgtat ctgctgagta tcgtccacca gggtaggcga tagcgatggt
    25321 ttcctgattt aattggctgt caagataggc tttagaggaa gtaagttcat ttgtttgatc
    25381 ctcgatagaa ctatactcta aatcagggtg gttgacggta tgcccttgaa aggagagccc
    25441 tgcggtctgc atttccttga tttgatcaag agtaaggtac cctgcttgtc catattcagt
    25501 aaatcctgta atgacattgt tggttgcttt catttgatat tgcttaagca atgggtaggc
    25561 ataactataa aaatcccaga ggctatcgtc aaaggttagc cagacaacct ttttgccagc
    25621 aggaaggaca ttttctgtca ataccttata agcctcttca ggtgataaag tatagtaacc
    25681 tgcatcttgc aatgctttta gatgactttc gaaagtcgtt ggatctacga taagattcgc
    25741 attagcttct tcctcaggag ccattacgtg aatggcatga tacatgagga ttggaagttt
    25801 gataggttca gtttgttgtt cccaaatgat ttctgtttgt acttcactac tttctgaagt
    25861 cataacactt gaagtggttg ttgtctctac cgttgaagct ttggaatcac tttgttgctt
    25921 agatggctgt tttagaaaga ttagaaaaat agatagtaga gtcactacta ataatgcgat
    25981 gccaagtagc attggcacaa gttgtttctt ttgtgtgcgg cttcgacggg ctcttcttga
    26041 atgtttcatt atcttatctc cataatcata tattaaaaca attatatcaa attttttgcc
    26101 aaatagtcag aatatttgtt ataatgggag aaatacattt taaaggagag cacatggtag
    26161 ttaagatagg attattagga tttggaaccg ttgcgagtgg tgtgccattt ttattagaag
    26221 aaaatcagga aaaaatagag aaagctgcgc atgatagtat tgaagttgct aaggttttgg
    26281 tcaaggatga agcagaaaaa gaccgtctct tggctgcagg tcatgactat cattttgtaa
    26341 caaatattga tgatatttta gctgatgagg acattgccat cgtcgttgag ctgatgggac
    26401 gtattgagcc agcaaaaaca tttattacac atgccttgga agcaggcaag catattgtaa
    26461 cagccaataa ggatttactt gctgttcatg gtagcgaatt gcgtgccttg gctgaagaga
    26521 aaggtcttgc gctttattat gaagctgcag ttgcaggtgg tattccaatc ttgcgtacct
    26581 tggttaactc attggctgct gacaaggtga ctcgtatcct cggtgtattg aatggtactt
    26641 caaacttcat gttgactaag atggttgatg aaggctggac ttacgaaaaa gctcttcaaa
    26701 cagcacagga acttggctat gcagaatctg acccaacaaa tgacgttgag ggaattgatg
    26761 cggcttacaa ggctgttatc ctcagtcaat ttgctttcgg gatgacagtt gattttgaac
    26821 acgtagcaca caagggtatt tcaaatatca cgccagaaga tgtagcagtg gcacaagagt
    26881 tgggctatgt catcaaactt gtgggtgata ttcaagaaac tacctctggt attgctgccg
    26941 aagtatctcc aaccttccta ccgaaaaatc atccacttgc aagcgtgaat ggtgtgatga
    27001 atgctgtatt tgtcgaatct atcggcatcg gccagtctat gtactatgga ccgggtgctg
    27061 ggcaaaaacc gactgcaaca agtgttatgg ctgacattat tcgtatcgtt cgtcgcttga
    27121 aagacaatac tatcggcaaa gcttttaatg aatatagccg ctcacttcaa ttggcagccc
    27181 caagcgatgt gaaaagcgaa tattatttct caattgatgc ccctgataaa aatggaaaaa
    27241 tgcttcgttt agcagaaatc ttcaattctg aagaaatttc cttcaagcaa attctgcaac
    27301 aagctgcaga tggagaaaca gcccgcctag tgattgtgac ccatgaaatg agtaagactc
    27361 agttggaaaa tgtaacagac aaattgagta aagaaacaga ctttactgtc ttaaatacct
    27421 ttaaagtact gggagaataa gcaatgaaaa ttattattcc agcaacttca gctaatatcg
    27481 gtccaggatt tgattcagta ggtgttgccc tttcgaaata tctaacgatt gaagtatttg
    27541 aagagactga tgaatgggtg attgagcaca atcttgaaca tgttccatca gacaagaaca
    27601 atcttttgat caagacagct ttaaagattg aaaaaggatt gcagccacat cgtatcagaa
    27661 tgattagtga tattcccttg gcacgtggtt tgggttcatc cagttccgtt atcgtagctg
    27721 gtatcgaatt ggctaatcaa ttagcaggtt tgaatatgac agcggatgaa aaattactca
    27781 aagctacaga aattgaagga catcctgata atgtagcccc agcgattttt ggtaatttag
    27841 tcatctctag ctatgttaat aagaaagtac aggcagttgt aacagaattc ccagaagcaa
    27901 gttttgttgc ctttattcca aactacccac tgcgtacggt tgaaagccga ggtgtactgc
    27961 cttctcagat ggggtacaag aaagcagtgg ctgctagtgc cattgcaaac gttgctgttg
    28021 ccagtttgat ggcaggtgat ctggaaaaag ctgggaaagc aattcagtca gacatgttcc
    28081 atgaaccgtt tcgtcagcta cttgttaagg agttttgtcc aatcaagcaa actgcacagg
    28141 agttgggagc ctatgcaacc tacttatcag gtgccggtcc aacagtgatg gtattagcgc
    28201 ccaaagatag ggaggatgct attgttctag cattagagga actaaatcta gacggaactg
    28261 tccaccgcct tcaagttgat accaaaggga ttgctattgt atagatagtg agaatctatc
    28321 atttgcaaaa ctaaacaggt ttattttatt ggagttcgcc atcgctacta tatgcggtag
    28381 gaagggaact c
//
LOCUS       DASGCC010000008        28099 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.008, whole genome shotgun sequence.
ACCESSION   DASGCC010000008 DASGCC010000000
VERSION     DASGCC010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28099
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.008"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(138..1448)
                     /locus_tag="U1404_000219"
     CDS             complement(138..1448)
                     /locus_tag="U1404_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HEM5347210.1"
                     /translation="MTILATLGVLLAIVAIIYWTSKNLHVIIAAPLASLIIILTNQMN
                     VLEVMLGKEQSYMAGLAGFLINNFAIFMLGSILARYMEASGATQTIANSILKVMGKDS
                     PYKGLLAITLIASILTYGGVSIFVVIFTLLPLSRPLFKELNINWALFPIPVFLGAGTY
                     TMTTLPGAPSIQNVIPTKVLGTSLTAAPVISLAASLTLLVFGLLYMAYCLKKSLANGE
                     TYTEEEDETAVVVADKTPNLFLSVLPLFSLIGTIFLMSKTPNVLAIGLLVSILLSALI
                     FYPYLPNQKEILNAATTASIVPAFATSSTVAFGTVLTLSAGFAVIQEWIQQIPGSPLI
                     SLSVSTALVSGIIGSSSGAVGIASSNFLPAYLEMGINPELLHRVVVVASAILTVVPQS
                     GVMITFHNLSKLSMKRGLKYSFILVTVGHLLALFVILLLAPLLY"
     gene            complement(1499..1987)
                     /gene="folK"
                     /locus_tag="U1404_000220"
     CDS             complement(1499..1987)
                     /gene="folK"
                     /locus_tag="U1404_000220"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEM5347211.1"
                     /translation="MKHLAYLSIGGNMGNRQAYLQAALDKLASHPGCQLGLVSNIYET
                     PAWGKTDQADFLNLACQVYTDLSAQDFLSACQNIEQELDRVRIEKWGQRTIDLDIIFW
                     DEEKIQEENLIVPHPYAHERAFVLNPLAEIASDYRHPILKKVVSDLLAELGEQKDIKI
                     FK"
     gene            complement(1984..2346)
                     /gene="folB"
                     /locus_tag="U1404_000221"
     CDS             complement(1984..2346)
                     /gene="folB"
                     /locus_tag="U1404_000221"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEM5347212.1"
                     /translation="MDKISLNKCRFYGYHGAFKEEQVLGQIFTVDCDLFVDLTAASQT
                     DNLEDTVHYGMVFETIKAVVEGKPYILIEKVAGVICQELFDQFPKVEKIRLAIYKENP
                     PIAGHYDSVGIELERERP"
     gene            complement(2339..3151)
                     /gene="folP"
                     /locus_tag="U1404_000222"
     CDS             complement(2339..3151)
                     /gene="folP"
                     /locus_tag="U1404_000222"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEM5347213.1"
                     /translation="MSIEQLANQVTIMGILNVTPDSFSDGGHYNEVESALVQVEKLLA
                     EGATVIDVGGESTRPGATFVSEEDEIARVVPIIRAIKENYDCLVSVDTYKTGTARAAL
                     EAGADILNDVWAGLYDGDMLALAAEYKVPIILMHNQKDESYADVVGEVKNFLAERAQA
                     ALDAGVSADQIWLDPGFGFSKNVQHNLDLLQGLEQITALGYPVLFGISRKRVVDYLLG
                     GNSLPTDRDQATAALSAWAVQKGCKMVRVHNVAANRDIVKVWDQLTSGGQHG"
     gene            complement(3160..3723)
                     /gene="folE"
                     /locus_tag="U1404_000223"
     CDS             complement(3160..3723)
                     /gene="folE"
                     /locus_tag="U1404_000223"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEM5347214.1"
                     /translation="MSKQEQIEQTIYQLLELLGEDPNREGLLDTPKRVAKMYLEMFNG
                     LEEDPKDQFTAVFSEGHEEVVLVKDIPFHSMCEHHLVPFYGIAHVAYIPSKGRVTGLS
                     KLARAVEVASRRPQLQERLTHQVAHALQDALEPEGVFVMVEAEHMCMSMRGIRKPGSK
                     TVTTVALGKYKEDAILRRELLSMIHNK"
     gene            3890..4372
                     /locus_tag="U1404_000224"
     CDS             3890..4372
                     /locus_tag="U1404_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5347215.1"
                     /translation="MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKL
                     EPGETPQACAIREIFEETGLTVTKHALKGVITFPDFTPNTDWYTYVFKITGFEGSLID
                     CNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE
                     "
     gene            complement(4421..5098)
                     /locus_tag="U1404_000225"
     CDS             complement(4421..5098)
                     /locus_tag="U1404_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HEM5347216.1"
                     /translation="MQLFNSIFSTANSNITLAQMSMVFGVSLSMGVLLAAVYKYKSNY
                     TKEFVITLSLMPALIAVIIALVNGNLGAGVAVAGTFSLIKFRSAAGSSKEMLAVLLAM
                     AIGLATGMGFLGLAVFMTVILSACILIFENISFAQVNQNRRHLLVTVPMNFDYDQFFE
                     NQFGKSCKQSDLLSLKYKKKKEALVLEYQVLLDKKITDKRLVDTVLSAGPLDVVLNKQ
                     MPKKKYL"
     gene            complement(5085..5828)
                     /locus_tag="U1404_000226"
     CDS             complement(5085..5828)
                     /locus_tag="U1404_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate polymerase domain-containing
                     protein"
                     /protein_id="HEM5347217.1"
                     /translation="MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATST
                     ITNIYFDNEDFDMIQDSLAKKNGREKIRMRVYDAIPSESSQAFLEIKKKENKIGYKYR
                     LTSNPVSVANYIENGVIDSTIKDDKVNSELEMLRERYGTIKPKMYIYYDRVSYKGIED
                     KKVRLTIDKNLLYRDYDVDAMEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQI
                     EKQSFSKYGNAYKLAHNITGEEVSQHAVV"
     gene            6021..6323
                     /locus_tag="U1404_000227"
     CDS             6021..6323
                     /locus_tag="U1404_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347218.1"
                     /translation="MYEFVLEYGSFPVKLIDGFVNNRSEIPDFLKEDEEMIARLNEIN
                     ELFHQLFLTIECKFDYIGKQFPDKIEQLRELYHPLADDLLAKYGNQIELKIEPFIL"
     gene            complement(6344..6610)
                     /locus_tag="U1404_000228"
     CDS             complement(6344..6610)
                     /locus_tag="U1404_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2087 domain-containing protein"
                     /protein_id="HEM5347219.1"
                     /translation="MNTQDIQEKFFREGKLIVIPKKLKSKQVLFAYLQEELAKKGSAF
                     TEKEVNAFLAEIYDDYAILRRYLVDYGYLSRDQYGLEYRIEEKR"
     gene            complement(6665..9064)
                     /locus_tag="U1404_000229"
     CDS             complement(6665..9064)
                     /locus_tag="U1404_000229"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEM5347220.1"
                     /translation="MLVSYKWLKELVDFDATSHDLSEKMSTTGIEVEGVEQKSAGLSK
                     LVVGQVVSAEPIPDTHLNTCQVNVGDEITQIVCGAPNVKPGIKVIVALPGARIAGNYK
                     IKKGKIRGVESLGMLCSLSEIGVSDSVVPKVYADGIYHLPEDAVVGEPVFSYLDLDDE
                     IIELSITPNRADALSMRGVAHEVAAIYDSKVNFKPVVLEESDKKASDVIEVAIESDKV
                     AAYTARVIENVTIAPSPQWLQNLLMNAGIRPLNNVVDITNYILLYFGQPMHAFDFDKF
                     DGKKIVARQAKEGENLVTLDGEERDLITDDIVISVGDKAVALGGVMGGANTEIDNNSK
                     TVVLEAALFDGKSIRKTSGRLNLRSESSSRFEKGINVATLTEAMDTAAAMIAELAGGQ
                     VLSGIVSAGSVDTSDVPVTATIDYVNRSLGTNLDYAQIADIFRRLGMETTGDASQFTV
                     AVPRRRWDIRIPADLVEEIARIYGYNNLPTTLPKEDGTAGELTLTQNIRRQVRSLAEG
                     AGLTEIISYALTTPEKAVEFAARPTTVTELMWPMTVDRSALRQNMVSGMLDTVAYNVA
                     RKNKNLALYEIGKIFEQSGNPKEDLPQEINKFALVLTGLVAEKDFQTPAVPVDFFHAK
                     GILEAIFGHYKLAVDFVATSEIAALHPGRTAEIHLNGAVIGFVGQVHPQTAKDYGIPE
                     TYVAEINLDAIEEALQPAQPFTEISKFPAVSRDIALLLSSDVKHQDVLDAIAGAGVKR
                     LTKVTLFDVYAGSNIEAGKKSMAYNLTFQNPADSLTDEEVAKYMEKISKALVELGAEI
                     R"
     gene            complement(9066..9587)
                     /locus_tag="U1404_000230"
     CDS             complement(9066..9587)
                     /locus_tag="U1404_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347221.1"
                     /translation="MQIDPICLEEVSVLQELAKQTFAETFAHDNDPKELEAFFEESYS
                     LEVLTSELSDPNCQHYFLRIDHQIAGYLKLNQGPAQTEQELENAFEIQRIYLLQAFQG
                     RGLGKVLFEFALEKAEQSSCDWVWLGVWEHNYKAQKFYSKYGFEKFGQHEFAVGDKID
                     VDWLLKRPLHQKG"
     gene            complement(10116..11159)
                     /gene="pheS"
                     /locus_tag="U1404_000231"
     CDS             complement(10116..11159)
                     /gene="pheS"
                     /locus_tag="U1404_000231"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEM5347222.1"
                     /translation="MSNIEQQLAELSQTTLEKLKEIQHQGEKELQDLRVAVLGKKGSL
                     TDLLKGLKDLSNDMKPIVGKQVNEVRDVLTTAFEETAQKVAAAKIQQQLASETIDVTL
                     PGRQVKVGKRHVLTQTSEEIEDIFLGMGFQIVDGFEVEKDYYNFERMNLPKDHPARDM
                     QDTFYITEEILMRTHTSPVQARTMDQHDFSKGALKMISPGRVFRRDTDDATHSHQFHQ
                     IEGLVVGENVSMGDLKGTLEMIIKKMFGEERQIRLRPSYFPFTEPSVEVDVSCFKCGG
                     DGCNVCKKTGWIEILGAGMVHPQVLEMSGIDSTKYSGFAFGLGQERIAMLRYGINDIR
                     GFYQGDVRFSEQF"
     gene            complement(11614..13338)
                     /locus_tag="U1404_000232"
     CDS             complement(11614..13338)
                     /locus_tag="U1404_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001137776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HEM5347223.1"
                     /translation="MPRLVDLRKKPYCLNDEQITWVEDTLAHLTDEEKIGQLFVNLFF
                     FGGDAFSGNNLSNQELMNRYHIGGARYMNGSPEQVQGLINELQSYSKIPLLVAANCDS
                     GGDGAVKGGTYISSGAQSEASRDPRIPYLAGLVSAREETALGVNVNFDPCVDIVQNWR
                     NTIVNTRAYGTNADDVIAYTSAYLKGLTAERDVIQCIKHFPGDGTEERDQHLVLGVNE
                     LSPEEWDKSFGRVYRHHIEAGVEMIMAGHIALPYYQQRLNPTLKDEDILPATLAPELI
                     QDLLKEKLEFNGLVITDASHMLGMTAAMRREDYVPAAIAAGCDMFLFFNNLEEDFEFM
                     LNGYRKGVITEERLHDALRRILGLKAKLNLHIKQAEGTLLKSADELAIIGCEEHLAWQ
                     REAADKAITLLKDTQKNLPISPETHRRIRLYYLEGEKEGIMAASTEVVDNLKAALEAR
                     GYEVTVNDGTTRIKGKTLQYREEVDLALTVANVIGYGAQNNYRIQWKTAMSNEVPWYV
                     HEVPTIFVSLNYTTHLHDVTMVKTAINAYHHNINTIESLLDKLEGKDDFYGVPNENVW
                     ANKWQAKL"
     gene            complement(13349..15139)
                     /locus_tag="U1404_000233"
     CDS             complement(13349..15139)
                     /locus_tag="U1404_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
                     /protein_id="HEM5347224.1"
                     /translation="MTHLVDLRKKPYSLDEEAISWIEETIAQMTLDEKIGHLFVNMGS
                     QRTEEYLTGVLNDYKIAAVRYNPGPAADIWEQNYILQTKSKIPLLIAANTESGGNGAV
                     TDGTKIGDEIKIAATADPRYAYEMGKVAGLEAAAVGCNASFAPIMDLSRNWRNPIIAN
                     RTWGANVDQVIELSKEYMRGIMEHGIVPFAKHFPGDGIDERDHHLSFASNPMTKSEWM
                     ETFGRIYGEMADAGLPGIMAGHIHLPNVEKEMHPERELDDMLPASLNKTLLDELLRGE
                     LGYNGAIVTDASHMIGMTASMSRRELLPTAIEAGCDLFLFFNDPEEDLQWMKEGLENG
                     LLSEERLHDALRRTLGLKAKLGLHLFEGRRQEIMMPKEEALALIGRDEAKQLAKEVAD
                     KAITLVKAKQEGIFPVNPERYKRILLVEVDGYKGGFGAMINAGKKRAADTLKELLEAR
                     GHQVSIWENTEARIAKLPEEERPAAIANVYASKRPIAEITDNYDLIINLVDVNSGGTT
                     QRIIWPAAKGTPDQPFYVHEIPTIVVSVQHPFALADMPQVATYINAYDGLPVTLEALV
                     AKLAGESDFTGVSPVDAYCGLVDTQIWRGK"
     gene            complement(15189..15989)
                     /locus_tag="U1404_000234"
     CDS             complement(15189..15989)
                     /locus_tag="U1404_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347225.1"
                     /translation="MMKTDYVFCVDSDGCAMDTMTYKHKLFFGPLAADVFDVKDREPF
                     LAEWNRVNLYSRERGINRFVGLVKGLDFAGVTGIDNLKNWVATTDSLSNASLERLIEE
                     TPSKDLELALEWSTQVNQAIKHYSGPVLAFIGVHKGLEKLSQLGKVYVVSSANKEAVE
                     EEWTDQGLLDFVTELYCQDRGKKEDVIKILIEEGYCPDKIMMIGDSPGDLKAAELNGV
                     HFYPILVGQEMQSWADLTETIADEFAHQAFTGEKETELIQAFWNNLDD"
     gene            complement(15989..16828)
                     /locus_tag="U1404_000235"
     CDS             complement(15989..16828)
                     /locus_tag="U1404_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM5347226.1"
                     /translation="MTRVIEFKDKVVVITGAGGVLCGYLAKEFAKAGAKVALLDLNEA
                     AAQVFVDEIAAAGGVAKAYKSNVLSKENLEGVRQQVLADFGPVDILINGAGGNNPKAT
                     TDNEFHEIGLPADTKTFFDLDEAGINFVFNLNYLGTLLPTQVFAQDMIGRSGANIINI
                     SSMNAFTPLTKIPAYSGAKAAISNFTQWLAVHFSKVGIRCNAIAPGFLVTNQNRGLLF
                     DESGQPTARANKILTNTPMGRFGEAEELVGGVFFLADENLASFVNGVVLPIDGGFSAY
                     SGV"
     gene            complement(16830..17930)
                     /locus_tag="U1404_000236"
     CDS             complement(16830..17930)
                     /locus_tag="U1404_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HEM5347227.1"
                     /translation="MKMSFRWYGKKDPVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLE
                     NILELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDELIENYKTSIRNVGAAGIPVVC
                     YNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVADDLNLPGWDSSYSKEEMKA
                     IIENYRQNISEEDLWANLEYFIKAILPTAEEAGVKMAIHPDDPPYGIFGLPRIITGQE
                     AVERFLNLYDSEHNGITMCVGSYASDPKNDDLAMTEYALKRNRINFMHTRNVTAGAWG
                     FQETAHLSQAGDIDMNAVVKLLVDYDWTGALRPDHGRRIWGDQTKTPGYGLYDRALGA
                     TYFNGLYEANMRAAGKTPDFGITVKTVGNKES"
     gene            complement(17945..19345)
                     /gene="uxaC"
                     /locus_tag="U1404_000237"
     CDS             complement(17945..19345)
                     /gene="uxaC"
                     /locus_tag="U1404_000237"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HEM5347228.1"
                     /translation="MSFNDKNFMLKNEPAKELYGKIAELPIYDFHCHLDPKEIFEDKV
                     YEDIVDLWLGGDHYKWRLMRANGISEEEITGSASKLDKFKAWARTLERAFGNPLYHWS
                     HLELRQVFGVEELLTEENAERLYHQLNAYLQEHRVSPRKLIADARVTFIGTTDHPLDS
                     LEWHKRLAEDSTIDTVVAPTFRPDEAFIEHRNFNLFMKRLEEVTGVAVRDFASFVEAL
                     GQRVSYFAQHGCRASDISFTAISYEEATLEELDEILLARLAGKEAGQSSINKWQTAIF
                     RELCRLYKKHGFVTQVHFGALRNNHTGLFEKLGADVGVDSIGDQTCLTVNLNRLLDNL
                     VKENALPKMIWYNLNPSYNIALANTLANFQSNEEGLRSQLQFGAGWWFNDTKLGMIDQ
                     MNAYAEQGMLANFVGMLTDSRSFLSYQRHDYFRRILATYVGQWIVDEEVPEDYNRLGQ
                     FVEAISYYNAKEFFEQ"
     gene            complement(19347..19967)
                     /gene="eda"
                     /locus_tag="U1404_000238"
     CDS             complement(19347..19967)
                     /gene="eda"
                     /locus_tag="U1404_000238"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEM5347229.1"
                     /translation="MLKQLKENYFFAVIRGKDEEDAKEIARHAILGGIRNIEITFSTP
                     NAATVIKELQEEFSYDSSVVIGAGTVMNLKLAQAAIDAGASFLVSPHFDKEIQDLAQE
                     AEVFYFPGCATATEIVTASQAGCPIIKLFPGGVLGPGFIKDIHGPVPQVDLMPSGGVS
                     VENVADWKKAGACAVGVGSALASRVQAEGYESVTTIARSFVAALEG"
     gene            complement(20090..20806)
                     /locus_tag="U1404_000239"
     CDS             complement(20090..20806)
                     /locus_tag="U1404_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HEM5347230.1"
                     /translation="MAKPLVEKASERLLELILERGYEVGDKLPNEYELAQDLEVGRST
                     VREAVRSLATRNILEVRQGSGTYISSKKGVSEDPLGFSLVRDRVKLTTDLFEVRYLLE
                     PRIAERVAQFASDEDIARLEEIVLAIEEAVAAGDTKHLELDVKFHCMLAEMSGNLAMT
                     SLMPVINQSIHLINENYSNRQMKSDSLQAHRNILMAIKQRHPVAAYDSMLAHIISVRQ
                     VVLSEWFDKDMTLHGLNDHK"
     gene            complement(20852..22651)
                     /gene="uidA"
                     /locus_tag="U1404_000240"
     CDS             complement(20852..22651)
                     /gene="uidA"
                     /locus_tag="U1404_000240"
                     /EC_number="3.2.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
                     /protein_id="HEM5347231.1"
                     /translation="MLYPIQTKTRSVYSLNGIWKFKQGNNDVHTLLDTDEVMVVPSSF
                     NDLVVDKDKRRFVGDNWYELMVALPVVSADEELVVRFGSVTHQAKVYADGQLIGEHKG
                     GFTPFECLIPSNLYDADQFRLTVCANNELNYTTLPVGNYSEEVDENGQIVKTVKENFD
                     FFNYAGIQRTVHLYKRPQNRIEDIVIRTELNQDLTQAVVNVDVKTVGQYDSIRMSILD
                     QEGQEVGLLENGQMVIEHPRLWEVLDAYLYTAKVELFDGENLLDTYSEQFGIRSVAVE
                     NGQFFINGKPFYFKGFGKHEDTFINGRGFNEAANLMDLNLLKDIGANSFRTSHYPYSE
                     EMMRLADRLGIVVLDEVPAVGLFQLFNAALNLTGDSEEVKSTWEVMQTKDAHELVIDE
                     LIARDKNHPSVVMWVVANEPAGHEKGARAYFEPLIQRMRDRDPSKRPVTLVNIMTATP
                     DKDEVMDLVDVVCLNRYYGWYVAHGDLKAAEKGLRQELETWQKLYPDKPILITEYGAD
                     TLQGLHSMWDIPYTEEFQVDYYDMNHRVFDSIPNLVGEQVWNFADFETTVGIIRIQGN
                     HKGLFSRNRQPKQIVREIKKRWTAIPNYHYKRK"
     gene            complement(22667..23695)
                     /locus_tag="U1404_000241"
     CDS             complement(22667..23695)
                     /locus_tag="U1404_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEM5347232.1"
                     /translation="MKKILAFGEVLLRLSPPQYQTLTQATSLDCQFGGSELNVLASLA
                     QLGHSVELVTALPKNEVGKMAEHFLFARQIGQKYVIRNEGRLGLYYYQKGFSLRPSQV
                     TYDRDYSAFSLSKEEDYDLEGMFDGVDWFHVSGITVALNPDIYRLAFRLMEMAKGQGV
                     KVSFDLNYRESLWSSFEEAREKLSPFVGLADICFGLEPIQLFNESGKDLKDELGLKRP
                     YENKEVLLAVVKGLAETYSLQGLAFTQREMTYNNEYLLKAYLYQDGILYETEKESIQV
                     LDRVGTGDAFTAGIILGYLQEKSPREILDLGMASFQFKHTIEGDINVISQSDIDLLLK
                     KGSREIKR"
     gene            complement(23751..25304)
                     /locus_tag="U1404_000242"
     CDS             complement(23751..25304)
                     /locus_tag="U1404_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5347233.1"
                     /translation="MEKHVEQRVEDVTYNKAKLWQIILFAMNNSSTNIYLVAFTFVTY
                     LSTGVLGLAALFVSQLMGYIRIFDGFIDPTIGVIIDKTDTKFGKYRPILVLGNIITAA
                     SLFMMLGLSGVNESLRLPLFILVLIIHKIGYSLQQTITKAGQVALTNDPKQRPIFNIV
                     DGIATTVLMTGSQVVVSGTLVPKHGGFTPSFFQELFLGVVVISAVLGILAIIGIWEKD
                     NKKYFGLGEKTQETKLKDYWKVIKGNKPLQVLSISAAFVKFVAQLFGDSVIGVMLYGI
                     IFGDYALSGKMSMLLILPGILVTVGAAQLARRKGLRFAYITALQLGIAGLVILAAMLF
                     SAKPGMLDLTNWNLYTIGFFVVYIVARYASSAPSGLVLTMGADITDYETSVSGRYLSG
                     MIGTIFSLTDSIASSFAPMVVGFVLAGIGFGKEYPTVETAFSTDLRMALIVLLTVIPA
                     AVLSVSLFLMKFYKLDREEMARIQEKIHVMKAAKDEERVRAIAKNVPLSDMDYVDVTQ
                     YKVDQYDDK"
     gene            complement(25491..26330)
                     /locus_tag="U1404_000243"
     CDS             complement(25491..26330)
                     /locus_tag="U1404_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEM5347234.1"
                     /translation="MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYV
                     NQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGAGAFIINGNQTDLDASVASVPYG
                     DNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
                     VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALD
                     KNKRIRYRVTLVYAESEDLVPVGSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIA
                     VNQ"
     gene            complement(26360..26551)
                     /locus_tag="U1404_000244"
     CDS             complement(26360..26551)
                     /locus_tag="U1404_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM5347235.1"
                     /translation="MDKDNLSYVGKNLILVAVVLLIAILVFVLGLMVGYGVIGDGDNV
                     FAVLSPAKWQELIGKFTGK"
     gene            complement(26544..27827)
                     /gene="murA"
                     /locus_tag="U1404_000245"
     CDS             complement(26544..27827)
                     /gene="murA"
                     /locus_tag="U1404_000245"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM5347236.1"
                     /translation="MDTIIVTGSKNGLKGQVEIEGAKNAVLPLLAATVLASQGQTKLT
                     QVPILSDVYTMNNVVRGLGVRVKFDEETKTIDIDATGKLGSETPYKYVSQMRASIVIL
                     GPILARNGYAKVSMPGGCTIGSRPIDLYLKGLQAMGAKIKQRAGYIEASAENLQGAHI
                     YLDFPSVGATQNLMMAATLAQGTTVLENAAREPEIVDLAIFLNKMGAKVKGAGTETIT
                     ITGVEELTGAEHQVVQDRIEAGTFMVAAAMTGGDVLVKDAVWEHNRPLISKMLEMGVE
                     VTEEAEGIRVRSQVDKLKPVTVKTLPHPGFPTDMQAQFTALMAVAKGESTMIETVFEN
                     RFQHLEEMRRMDLHSEILRDTAIITGGLALQGAQVMSTDLRASAALILAGLVAEGETI
                     VGKLTHLDRGYYRFHEKLAALGATIERVSGEDENG"
     gene            complement(27852..28076)
                     /locus_tag="U1404_000246"
     CDS             complement(27852..28076)
                     /locus_tag="U1404_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HEM5347237.1"
                     /translation="MVISILQFFSHILFIYLAHHLLVTTVDWSRWLKVTGDNQRKINL
                     LILFLAIALGYLVSTFFLELLMVGRSFANM"
BASE COUNT         8127 a         6728 c         5222 g         8022 t
ORIGIN      
        1 tagagcttac tgttttggga tttcattgat tattatatta taaagaaaaa gcctctaccc
       61 gaataaatat ttgagtagag attttaactg aatgatattg cccattggca gggcttttat
      121 ttgtttgtta atcaatccta atatagcaaa ggtgccaaca gtaaaatcac aaataaggct
      181 aacaaatgcc caactgtcac taggataaat gaatacttga gtccacgttt catacttaat
      241 ttcgaaagat tgtggaaggt aatcatcacg ccagactgag gcacaactgt caagatagct
      301 gatgcaacaa ctactacacg atgcagcaac tctggattaa tccccatttc taaataggca
      361 ggaaggaaat tacttgaagc aatacctact gcaccagaag atgaaccgat aataccacta
      421 accaatgctg tcgaaacaga taaactaatc agcggcgatc ctggtatttg ttgaatccat
      481 tcttgaatga ctgcaaaacc tgctgacaag gttaacaccg tcccaaatgc tactgtacta
      541 gaagttgcaa aagcaggcac tatggatgct gttgtcgcag cattcaaaat ttctttttga
      601 tttggcagat atggataaaa aatcaaggct gatagaagga tagagaccaa caatccgatt
      661 gctaggacat tcggagtttt actcattagg aaaatcgtcc caataagact gaatagaggc
      721 aagactgata aaaatagatt tggtgtctta tcagctacca ctactgcagt ttcatcctct
      781 tcttctgtat acgtctctcc atttgctaga cttttcttga ggcagtaggc catgtagagc
      841 aagccaaata ctaatagcgt caagctggct gccaaactga taacgggtgc cgcggtcaag
      901 ctagttccca aaacttttgt cggaataaca ttctggatgg aaggtgcccc aggaagagtt
      961 gtcatcgtat aagtacctgc tcccaaaaag acaggaatcg gaaaaagtgc ccagttgata
     1021 ttcaactctt taaagagtgg gcgtgaaagg ggaagcaagg taaaaataac tacaaaaata
     1081 ctcacaccac cataggtcag aatggaagca atcaaagtga tggctaacaa acccttatag
     1141 ggactatctt ttcccattac tttcaaaatg ctattggcaa tcgtctgcgt agctccactt
     1201 gcctccatat aacgtgccaa gatagacccc aacataaaga tggcaaaatt attaatcaaa
     1261 aaacctgcta agcccgccat ataagactgc tctttgccca acataacttc caaaacattc
     1321 atctgattgg tcagaatgat gattaaacta gctagtggtg cagcaatgat aacatgtaaa
     1381 ttttttgatg tccaataaat aatggctaca atagccaata aaactcctaa agttgctaaa
     1441 attgtcataa aactccttta tctattctat cctctaataa acctagtatc agaggcaact
     1501 atttgaaaat ttttatatct ttttgttccc ctagttctgc aagcaagtcc gataccactt
     1561 ttttcaaaat tgggtgacgg taatcagaag caatctcagc aagagggttg agaacaaatg
     1621 ctctttcatg ggcgtaggga tgggggacaa tcagattctc ttcttgaatc ttctcctcat
     1681 cccaaaaaat aatatccaaa tcaatggtcc gttgtcccca tttttcaatc cgtactcggt
     1741 ccaactcttg ttcgatgttc tggcaagcgc ttagaaaatc ttgagcagac aaatcagtat
     1801 acacttgaca ggctagattg aggaaatcag cctggtcggt cttgccccaa gctggagttt
     1861 cataaatatt ggaaactaag ccaagctggc aacctggatg actggctaat ttgtctagag
     1921 ctgcctgtaa ataggcttgc cgattgccca tgttccctcc gatactgaga taggctagat
     1981 gcttcatggt cgttcacgct ccaattcaat tccgacagaa tcatagtgtc cagcaatagg
     2041 cggattttcc ttgtaaatgg ccaagcgaat cttctccacc tttggaaatt gatcaaaaag
     2101 ctcctgacaa ataacacctg ctaccttttc tataaggatg tagggcttgc cttccacaac
     2161 tgctttaatg gtttcaaaga ccataccata gtgaactgtg tcttctaaat tgtcagtttg
     2221 tgaagctgct gtcaggtcaa caaacaaatc acagtcaacc gtgaaaattt gaccaagaac
     2281 ttgttcttct ttgaaggcac catggtagcc gtagaaacgg catttattaa gtgaaatctt
     2341 atccatgttg acctccagaa gtcaattggt cccaaacctt aacgatatca cggttggcag
     2401 cgacattgtg aacacggacc attttacagc ctttttgaac tgcccaggca gacaaggctg
     2461 ccgttgcttg atcgcggtca gtcggtaagc tattgccccc aagcagataa tccaccacgc
     2521 gcttacgaga tattccaaat agaacgggat aaccaagagc agtaatctgt tccaaacctt
     2581 gtaagagatc aaggttatgt tggacattct ttgaaaagcc aaatcctgga tccaaccaaa
     2641 tctggtctgc ggaaacacca gcatcaagtg ctgcttgggc acgctcagct agaaagtttt
     2701 tgacctctcc aacaacatcc gcatagcttt cgtctttctg gttgtgcata agaatgattg
     2761 gtaccttgta ctccgcagcc agggccaaca tatctccatc ataaagtcct gcccagacat
     2821 catttaaaat atctgcgcct gcttccaagg ctgcacgtgc agttcctgtt ttataggtat
     2881 cgacgctgac aagacagtca tagttttctt tgatagcgcg gataatcgga accacgcgag
     2941 caatctcgtc ttcttcagac acaaatgttg cacctggccg agtggactca ccaccaacat
     3001 caatgacggt agcaccctca gccaacaact tttctacttg taccaaggca gactccacct
     3061 cattatagtg accaccatct gaaaatgaat ctggcgtcac attgagaatc cccataatgg
     3121 ttacttgatt cgctaactgt tcgattgaca tagaacctcc tatttattgt gaatcatgga
     3181 caagagttca cggcgcaaga tggcatcttc cttgtatttg ccaagagcaa ctgtggtcac
     3241 tgtcttacta cctggcttgc gaataccacg catgctcatg cacatgtgct ctgcttcgac
     3301 catgacaaaa acaccttctg gttcaagggc atcttgaagg gcatgggcaa cctgatgggt
     3361 caagcgttcc tgcaattgag ggcgacgact tgctacctcc actgcacgcg ccaatttgct
     3421 aagacctgtc acacgcccct tactcggaat ataagctaca tgggcaatgc cataaaaggg
     3481 taccaaatgg tgttcacaca tagaatgaaa aggaatatcc ttgaccaaaa caacctcttc
     3541 atgaccttct gaaaagacag ctgtaaattg gtctttggga tcctcttcta ggccgttaaa
     3601 catttctaaa tacatcttag cgacccgttt aggcgtatct aataaacctt cacgattcgg
     3661 gtcctcaccc aataattcta ataattgata aattgtttgt tcgatttgtt cttgttttga
     3721 catagtgcat cctaaatagt ttgatgttct tattatacct caaaaactgt tttcagaaaa
     3781 gggctttcag tatgctaatc ctaaaactgt cccctaccag agcaacaagc aggtgtccct
     3841 actcccacct ttgtggtata ataggataaa tcaactacaa ggagcctcta tgaccaagaa
     3901 acccgtccaa ctcgctacga tttgctacat tgataatggt aaggaatttc ttctccttca
     3961 tcgaaacaag aaagaaaacg atgtccatca aggaaaatgg attggagttg gtggcaaact
     4021 agaacccggc gaaacgccac aggcttgtgc cattcgagaa atctttgagg aaactgggct
     4081 tactgtaaca aagcatgctc taaaaggagt gataaccttc ccagacttta ctccaaacac
     4141 agactggtac acctatgtct ttaagataac tggttttgaa ggaagtctta ttgactgcaa
     4201 tgaaggtgac ttagagtggg ttccctatga ccaagtcttg tccaaaccaa cttgggaggg
     4261 cgaccggcat tttcaagaat ggctattaga ggacaaacca tttttttccg cttgcttccg
     4321 ctatgatggg ggcaaactgc ttgattacag tgttgatttt tatgaagaat aagctaataa
     4381 aaaacgaaaa aagccttgga aatccagggc ttctttgata ttacaaatac ttcttcttcg
     4441 gcatttgctt gtttaatacg acatccaagg gaccggctga caatactgta tctaccaaac
     4501 gtttatctgt aattttctta tcaagaagga cttgatattc taaaacaagt gcttcttttt
     4561 tctttttgta tttaagggat aataaatcag actgcttgca agatttacca aattgatttt
     4621 caaaaaattg atcgtagtca aaattcattg gcactgtcac caagagatga cgacgatttt
     4681 gattgacttg ggcaaagctg atattttcaa aaatcaagat acaagcagat aggatgaccg
     4741 tcatgaagac agccaaacct aggaagccca tccctgtcgc tagaccgatt gccatcgcta
     4801 agaggactgc aagcatttcc tttgaagaac ctgctgctga gcggaattta attagactga
     4861 aagtccctgc tactgcaaca cccgctccta agttaccatt aactaatgca ataataacag
     4921 caatcaatgc cggcattaaa cttagtgtga tgacaaattc ctttgtataa ttagatttat
     4981 atttataaac agccgctaag agtaccccca tggatagact aactccaaaa accatggaca
     5041 tctgcgctaa ggtaatattg ctattggcag ttgaaaagat actattaaac aactgcatgt
     5101 tgacttactt cctctccagt gatgttgtgg gcaagcttat aggcattgcc atattttgaa
     5161 aatgattgct tttcgatttg gtatttttcg agcagggcta ccaaccagtc tggtcgttct
     5221 tctggaactt ttacttccat gattactttg gttgggtcta ataggttctt accaaattta
     5281 ccttccattg catccacatc gtagtctcga taaagtaagt tcttatcgat tgtgagacga
     5341 acttttttgt cttcgattcc tttataggat acgcgatcgt agtagatata catcttcggc
     5401 ttaatagtcc cgtagcgttc tctcaacatt tcgagttctg agtttacctt atcatccttg
     5461 attgtggaat caatcactcc attttcgata taatttgcta cagaaacagg gtttgaagtt
     5521 aaacggtatt tatagccaat tttattttct tttttcttaa tttcaagaaa ggcttgactc
     5581 gattcagatg gtatcgcatc atagacacgc atacgaattt tctcacgtcc attctttttg
     5641 gcaagtgaat cttgaatcat atcaaaatct tcattatcaa agtagatatt ggtaatcgtt
     5701 gatgtcgcaa actcatctgc catcatatac tgacgaagtt ccttttctaa aagttcaaaa
     5761 gtttttttat caacgatata tttagtctct ttacgcttaa actgcttttg tacgattctt
     5821 gttttcatta ttgtgcctct tctatcctaa atttttacag gtccctgtct tgtttacaag
     5881 atatagtcta ccgacttagc tttaaatgaa actgaaaata aaattaaaca aaacttaaac
     5941 tgcaataaag ttgaaattct tttgtcacat tctaatctat gctacaatag tcctatcaat
     6001 agtaaggcaa ggagaaaccc atgtacgaat ttgtcctaga atacggctct ttccccgtaa
     6061 aactcatcga cggttttgtc aacaatcgct cagaaattcc tgattttctc aaagaagacg
     6121 aagaaatgat tgcccgcttg aacgagatca acgaactctt ccaccaactt ttcttaacca
     6181 tcgaatgcaa gtttgactat atcgggaaac aattccctga caagatcgaa caactacgag
     6241 aactctatca tcccctggca gacgatttac tagccaagta tggcaaccag atagagttga
     6301 agattgaacc ctttattttg taagacaaaa gagatgaccg caatcatctc ttttcttcta
     6361 ttctgtattc caaaccatac tggtcacgcg ataggtaacc ataatccacc aagtagcgtc
     6421 tcaatatagc atagtcatca taaatctcag ctagaaaggc attaacttct ttttctgtga
     6481 atgccgagcc tttcttagcc aactcttctt gtaaataggc aaacaagacc tgcttacttt
     6541 ttaatttttt aggaataacg ataagcttgc cttctcgaaa aaatttttct tgaatatctt
     6601 gagtgttcat acttccctcc aaaaaatcct agcccgctga ctaggatttc acaagattta
     6661 catgttaacg gatttcagct ccaagctcaa ccaaagcctt actaattttc tccatatact
     6721 tagccacttc ctcatccgtc aggctatccg caggattttg gaaggtcagg ttataagcca
     6781 tagacttctt accagcctca atattgctac ccgcatagac atcaaagagg gtcactttag
     6841 tcaagcgttt cacgccagca ccagcaatgg catccaggac atcctgatgt ttaacatcac
     6901 tgctcaagag cagggcaata tcacggctaa ccgctgggaa tttagagatt tcggtaaatg
     6961 gctgagcagg ctggagagct tcttcaatcg catccagatt gatttcagcc acataggtct
     7021 caggaatacc gtagtccttg gccgtttgag gatgtacctg accgacaaag ccgatcacag
     7081 ccccattcaa atggatttca gctgtacgac cagggtgcaa ggcagcaatc tcactagtcg
     7141 ccacaaagtc aacagccaac ttataatgac caaagattgc ttccaaaatc cctttggcat
     7201 ggaagaaatc aactggtaca gctggtgtct ggaagtcttt ctcagctacc aaaccagtca
     7261 agacaagggc aaacttattg atttcttgtg gcaggtcctc ttttggattg ccagactgtt
     7321 caaagatttt accgatttcg taaagagcca agttcttgtt cttacgagcc acattgtagg
     7381 ccactgtgtc taacatacca gacaccatgt tctgacggag ggcagagcga tcaacagtca
     7441 taggccacat gagttcggtg actgtggttg gacgagccgc aaactccaca gccttttcag
     7501 gcgttgtcag agcgtaagaa atgatttctg tcagacctgc accttctgcc aggctacgaa
     7561 cttgacgacg gatgttctgg gtcagggtca actcacctgc tgttccgtcc tctttcggaa
     7621 gagtggtcgg cagattattg taaccataga tacgagcgat ttcctctacc aagtctgctg
     7681 gaatgcgaat gtcccaacga cgacgcggta ctgctactgt aaactgactt gcatcgccag
     7741 ttgtttccat acctaaacga cggaaaatat ctgcgatttg ggcatagtcc agattggtcc
     7801 cgagcgagcg gttgacgtaa tcaatggtcg ctgtgactgg gacatccgaa gtatccacgc
     7861 tgcccgcaga aacgatgcca gacaagacct gaccgccagc cagttccgca atcatagcag
     7921 ccgctgtatc catagcctcc gtcaaggtcg ctacgttgat acccttttca aatcgagaag
     7981 aagactcaga gcgaaggttg aggcgacctg aggtcttgcg gatagacttg ccatcaaaga
     8041 gggcagcttc cagcacaacc gtcttagagt tgttgtcaat ttctgtatta gcaccaccca
     8101 tgactccacc gagggcaacc gccttgtccc caacggaaat gacgatgtca tcggtaatca
     8161 agtcacgttc ttcgccgtca agagttacca agttctcacc ctcttttgcc tgacgagcca
     8221 cgattttctt gccatcaaac ttgtcaaagt caaaggcgtg cattggctga ccgaagtaga
     8281 gcaagatgta gttggtgatg tccaccacat tgttgagcgg gcgaatacct gcgttcatga
     8341 gcaggttttg caaccactgc gggctcggtg cgatggtcac attttcaatg acacgagccg
     8401 tgtaggcagc caccttgtct gactcaatag ccacttcaat cacatcgctg gccttcttgt
     8461 cgctttcttc caagaccact ggcttgaagt tgaccttgct gtcatagata gccgccactt
     8521 cgtgagccac gccacgcata gagagagcat cggcacggtt tggtgtgatg gacagctcga
     8581 taatctcgtc gtcgaggtcc aggtatgaaa agactggctc acccacgact gcatcttctg
     8641 gcaggtggta gattccatcc gcatagacct ttggcacaac tgagtcggac acgccgattt
     8701 cgctcaatga gcagagcatc cccaaggact caacaccgcg gattttgcct ttcttgatct
     8761 tgtagttgcc agcgatacga gctcctggca gagcgacgat caccttgatc ccaggcttga
     8821 cattcggagc accgcaaacg atttgcgtga tttcgtcacc cacattgacc tggcatgtat
     8881 tgaggtgggt atctggaatt ggctcagcag acacaacctg accgacaacc aacttagaca
     8941 ggccagcact cttttgctca accccttcta cttcaattcc tgttgttgac attttttcag
     9001 acaagtcatg acttgtcgca tcaaagtcaa ccagttcttt taaccatttg taacttacta
     9061 acatattatc ctttctggtg caaaggccgt ttcagtagcc aatccacatc aatcttatca
     9121 ccgaccgcaa attcatgctg gccaaatttt tcaaatccgt atttggaata gaatttctga
     9181 gccttgtaat tatgttccca aactcccagc cagacccagt cacaactaga ctgctctgct
     9241 ttttccaaag caaattcaaa caagaccttc ccaagaccgc gaccttgaaa agcctgcaag
     9301 agatagatac gctggatttc aaaggcattt tccaactcct gctccgtctg ggcaggaccc
     9361 tggttaagct taagataacc agctatctga tgatctattc ttagaaaata gtgctggcag
     9421 ttgggatccg ataactcact agtcaagacc tccaaggaat aagactcctc aaagaatgcc
     9481 tccagttcct tcgggtcatt atcgtgagcg aaggtctctg caaaagtctg cttagccagc
     9541 tcctgcaaaa cagaaacctc ttccaaacat ataggatcaa tctgcatctc attgcctctc
     9601 atttctaact gggctaggaa agtcgctcaa tagcgatttc cgttcaccta ctccagcggt
     9661 gttacgacgg ttcaaggttg aaaacaacat ttttttcaac cttgaaccta gtgaggggag
     9721 taggtagacc gccatagcgg ctaccgtttc tcgtactgaa cacctaacaa acttcctaaa
     9781 ttacgacgga tttcaagcaa aacgatattt ttagcttgaa atcctagtaa ggtagctagg
     9841 aaagtcgcag agcagctatt tccacacctt aaaatagtgc gagattacga cggtatttca
     9901 agcgaaacga tatttttcgc ttgaaagcct agtaaggtag ctaggaaagt cgcagagcag
     9961 cgattcccac accttaaata gtgcgagatt acgacgttct aaggttgaaa acgacatttt
    10021 tttcaacctt gaacctagtg aggggagtag gtagaccgcc atagcggcta ccgtcctgtt
    10081 tctagatact ttcagtatca gaaacagctc tcacatcaaa actgctccga gaatcgtaca
    10141 tcgccttgat agaatccacg aatatcgttg ataccgtagc gaagcatggc aatacgttcc
    10201 tgaccaagac cgaaggcaaa gccagagtac ttggttgagt caatgccact catttccaat
    10261 acttgcgggt ggaccatgcc ggcaccgagg atttcaatcc agcctgtttt cttacataca
    10321 ttacagccgt caccaccgca cttaaagcag gaaacatcca cctcaacaga aggctcagtg
    10381 aatgggaagt atgatggacg caggcgaatc tgacgctctt caccaaacat tttcttgata
    10441 atcatttcaa gcgtaccctt gagatcgccc atggatacat tttcaccgac aaccaaacct
    10501 tcgatctggt ggaactggtg gctgtgagtc gcatcatccg tatcacgacg gaaaacacgt
    10561 cctggcgaaa tcatcttcaa ggcaccttta gaaaaatcat gttggtccat ggtacgtgcc
    10621 tgaacaggcg acgtatgggt ccgcataaga atttcttctg tgatgtagaa ggtgtcctgc
    10681 atatcacgcg ctgggtggtc ttttggcaaa ttcatgcgct caaagttgta gtagtctttt
    10741 tccacttcaa atccgtcaac gatttggaag cccatgccca agaaaatatc ttcgatttcc
    10801 tcagaagttt gggtcaagac atggcgtttt ccgaccttaa cctgacgacc tggcaaggtc
    10861 acatcaatgg tttcggaagc tagttgttgc tgaatttttg ctgctgcaac cttttgagca
    10921 gtttcttcaa aggcagttgt cagcacatca cgcacttcat taacctgttt accaacgatt
    10981 ggtttcatgt cgttagacag gtctttcaag cctttcaata agtccgtcaa agaccctttt
    11041 ttacccaaaa ccgcaacacg caggtcttgt agttcttttt ctccttggtg ctggatttct
    11101 tttaactttt ctagtgtcgt ttggcttaat tcagccaact gttgttcaat gtttgacata
    11161 attcctccaa taaaaaacgc atgacaccac tcgtatcgga gcgttgtcac gcggtaccat
    11221 ccgttttcat ctgcaaggca gaccttagtt ctatgaacct atattcacaa gtgaagtgct
    11281 tgcacataag agatggtttt ccgctaatca aggctgtttt ttgagggaat actgactgta
    11341 ttttgaaaaa aactaacgat gagtagctga aaaactagcc ttagatggaa gtgttgaact
    11401 gtgaatgcag gttctaagtc cttgtgtgag tgaattcgac caactttcac tgattgagct
    11461 tacagtcacg gctcaactcc ctgggcagtt tccataggtg tactagtctc acagactcct
    11521 attcaattaa gaatattcta tcaaaaagaa gaaagtttgg caagaaatct tcctagaaaa
    11581 ctccctctat ctaggataga aaggagttta gttttatagt tttgcctgcc atttattggc
    11641 ccaaacattc tcatttggaa caccatagaa gtcatctttt ccttctaatt tatcaagtaa
    11701 ggattcgata gtatttatat tgtgatgata ggcattgata gcagttttga ccatggtaac
    11761 atcgtgaagg tgagttgtat agtttagtga aacgaaaatg gtcggaactt catgtacata
    11821 ccaaggaact tcattggaca tagccgtttt ccactggatg cggtaattat tctgtgctcc
    11881 atatccaatg acattggcaa cagtcaaggc taaatcaact tcttctcggt attgcaaggt
    11941 ttttccttta atccgagtcg taccatcatt gacagtcact tcataaccac gcgcttccaa
    12001 ggcagcttta aggttatcaa ccacttctgt acttgccgcc ataatccctt ctttttcccc
    12061 ttctaggtaa tacaaacgga ttctgcgatg ggtttctgga ctgattggaa gatttttttg
    12121 tgtatctttc aacagcgtaa ttgccttgtc tgctgcctca cgttgccaag ccaagtgttc
    12181 ttcacagccg ataatagcca attcatcagc tgattttagt aaggttcctt ccgcttgctt
    12241 gatatgcaga ttgagtttgg ctttcagacc taaaatgcga cggagagcat catgaaggcg
    12301 ttcttcagta atcactccct tgcggtagcc attgagcata aattcaaaat cttcttctaa
    12361 gttattgaag aataagaaca tatcgcaacc cgcagcaatg gctgcaggta cgtagtcttc
    12421 acgacgcatg gctgctgtca tccccaacat gtggctggca tctgttatga ccaagccatt
    12481 gaattccagt ttttctttca ataaatcttg aatcaattca ggagccagtg ttgcaggcaa
    12541 aatgtcttca tccttcaaag ttggattgag tcgttgttgg taatatggca aggcaatatg
    12601 acccgccata atcatctcaa caccagcttc aatatgatga cgatagacac gaccaaaact
    12661 cttgtcccat tcttctggag agagttcatt gacaccgagg actaggtgct gatcacgttc
    12721 ttctgtacca tctcctggga aatgcttgat acattgaata acatctcttt cagcagtcaa
    12781 tccttttaaa taggcactgg tataggcaat aacatcatcc gcatttgtac cataggctct
    12841 ggtattgaca atcgtattgc gccagttctg aacaatgtcc acgcaaggat caaagttgac
    12901 atttacacct aatgcagtct cctcgcgcgc agatacgaga cctgctaggt agggaatacg
    12961 aggatcccga ctggcttctg attgagcacc tgaggaaata taggttcctc ctttcacagc
    13021 cccatctcct cctgagtcac agttcgctgc aaccaagaga ggtatttttg aatagctttg
    13081 caactcgtta atcagtcctt gtacctgttc tggactgcca ttcatataac gagcaccacc
    13141 tatgtgatat cggttcatca attcctgatt actcagatta tttccactaa aggcatcccc
    13201 tccgaagaag aatagattaa caaacaattg accgattttt tcttcatcag tcagatgagc
    13261 caaggtatct tctacccagg taatctgctc atcattcaaa caatagggtt tcttccgcaa
    13321 atcaaccaat ctaggcattc tttcctcctt attttccgcg ccaaatctgt gtatctacca
    13381 agccacaata ggcatctaca ggcgatactc ctgtaaagtc tgactctcct gctagtttag
    13441 caaccaaggc ttctaatgtg acaggcaagc catcataggc attgatatag gtagcaacct
    13501 gtggcatatc tgcaagtgca aatgggtgct gaacagagac aacaatggtt ggaatttcgt
    13561 gaacatagaa aggctggtct ggcgttccct tggcagctgg ccaaataatt cgctgagttg
    13621 ttcctcctga gttgacatca actaaattga taatcaaatc atagttatct gtgatttcgg
    13681 caattggacg cttggaagca tagacatttg caatcgctgc tggtctttct tcttctggta
    13741 atttggcaat ccgtgcctcc gtattttccc agatagatac ttggtgacct cgagcttcta
    13801 atagttcttt cagcgtatcg gctgctctct tcttgccagc attgatcatg gcgccaaaac
    13861 cacccttata gccatccact tcgaccaata aaatacgttt gtagcgttct ggatttacgg
    13921 ggaaaattcc ttcttgtttg gcttttacca aggtaatcgc cttgtcagct acttcttttg
    13981 caagctgttt cgcctcatct ctaccaatca aagccagtgc ttcttctttt ggcatcatga
    14041 tttcctgacg acgaccttca aacaagtgaa gaccgagttt agctttcaag cccaaggtac
    14101 gacgaagggc atcatgtaga cgttcctcag aaagcagacc attttccaat ccttctttca
    14161 tccattgcaa atcttcttct ggatcattga agaaaaggaa aagatcacac cctgcctcaa
    14221 tagctgtagg caatagctca cgacgcgaca tagaggctgt cataccgatc atgtgactgg
    14281 catccgtgac aatggcacca ttgtaaccta attctccacg aagcaattca tccaagaggg
    14341 ttttattcag cgaagctggc aacatgtcat ccaattcacg ttctggatgc atttcttttt
    14401 cgacatttgg caaatgaata tgccccgcca taatacctgg aagacctgcg tcagccatct
    14461 caccataaat ccgtccaaat gtttccatcc attcagattt ggtcatggga ttcgaagcaa
    14521 aagagagatg atggtcacgt tcatcaatac catcgcctgg gaaatgctta gcaaacggca
    14581 caatgccatg ttccataatg cctcgcatgt attctttgga caattcaatg acttggtcta
    14641 cattagctcc ccaagttcgg tttgcaatga ttggattgcg ccaattacgg ctgaggtcca
    14701 taatcggtgc aaaggaggca ttgcagccta ctgcagctgc ttcaagtcct gcaactttcc
    14761 ccatttcata agcatagcgg ggatcagctg tcgcagcaat cttgatttca tccccaattt
    14821 tcgttccgtc cgtaacagcg ccattcccac cagattcggt attggctgca atcaaaaggg
    14881 gaatcttaga cttggtctgc aaaatatagt tttgctccca aatatctgca gcaggtccag
    14941 gattgtaacg aacagcagca atcttataat catttaatac tccagtcaga tattcttctg
    15001 tccgctggct ccccatgttg acaaagaggt gaccgatttt ttcatccaag gtcatctgag
    15061 caatggtttc ttcaatccaa gaaatagcct cttcatcaag gctgtaaggt ttcttccgta
    15121 aatctactaa atgtgtcatg tttgcctcca aaaaagctag agggcatcgc gcctctagcc
    15181 cttctctact agtcgtctaa attattccaa aatgcctgta tcaattctgt ttctttctca
    15241 cctgtgaatg cttgatgagc aaattcatct gcaatcgttt ctgtcaaatc cgcccaagat
    15301 tgcatctctt gtcctactaa aataggatag aaatggacac cgttcaattc cgccgccttc
    15361 aaatcaccag gcgagtcacc aatcatcata atcttatcag gacaataccc ttcctctatt
    15421 aatattttaa tgacatcttc tttcttgcca cggtcttgac agtacaattc tgtaacaaag
    15481 tccagcaaac cttggtctgt ccactcttct tctactgctt ccttattagc agaagaaacc
    15541 acgtagactt ttcctaactg gctcaatttt tccaagccct tgtgaacgcc gatgaaggct
    15601 aaaacaggac cgctataatg cttaatggct tgattgactt gagtggacca ttctaaagct
    15661 aattccaagt cctttgatgg cgtctcctct atcaatcttt ccagagaagc atttgacaaa
    15721 gaatctgtgg tcgcgaccca atttttcaag ttatctatac cagtcacacc tgcaaagtct
    15781 aggcctttaa ctaagcctac aaaacggtta atgccacgtt ctcgagagta cagattgact
    15841 cgattccatt cagctaaaaa cggttctcta tctttgacat caaaaacatc tgcagccaag
    15901 gggccgaaaa agagtttatg tttgtaggtc atggtgtcca tggcgcagcc atcagagtcc
    15961 acacaaaata cgtaatccgt tttcatcatc aaactcctga ataggctgag aagccaccgt
    16021 caatcggtaa aacaacaccg ttgacaaaac ttgccaaatt ctcatctgcc aagaagaaga
    16081 ctccgccgac tagctcttcc gcttcaccaa accgtcccat tggtgtattg gtcaaaatct
    16141 tgttggcacg tgcggtcggt tgacctgact cgtcaaatag caagccacgg ttttggttgg
    16201 taaccaagaa tccaggcgca atcgcattac aacggatgcc aacttttgaa aaatggactg
    16261 ccaaccattg ggtaaaatta ctaatagcag ccttggcacc tgaataggct ggaatttttg
    16321 tcaaaggagt aaaggcattc atgctggaaa tattgataat atttgctccc gagcgaccaa
    16381 tcatatcctg tgcaaagacc tgtgttggca ataaggttcc caaatagttc aaattgaata
    16441 caaagttgat acctgcctca tccaagtcga agaaagtttt ggtatcagct ggtagtccaa
    16501 tctcatggaa ttcattgtcc gttgtcgctt ttggattatt gcctccagca ccattgatta
    16561 aaatatctac aggaccaaaa tctgctagga cttgctggcg gactccttcc aaattttcct
    16621 tagaaagaac gtttgattta taggcttttg ctacgcctcc tgctgctgca atctcatcaa
    16681 cgaagacctg agccgcagct tcatttaagt ccaaaagcgc aacctttgca cctgccttag
    16741 cgaattcttt tgccaaatag ccacaaagaa cgccacctgc tcctgtaata acaacaacct
    16801 tgtccttaaa ttcaataaca cgtgtcatac tagctctcct tatttccgac tgttttgact
    16861 gtaattccaa aatctggtgt cttgcctgct gctcgcatat tggcttcata gagaccgtta
    16921 aagtaggttg ccccaagggc tcggtcatac agaccataac caggtgtctt ggtctggtct
    16981 ccccagatac gacgaccgtg gtctggacgc aaggcaccag tccagtcata atctaccaat
    17041 aatttaacaa cagcgttcat gtcaatgtca ccagcctgtg acagatgtgc tgtttcttgg
    17101 aagccccaag cccctgctgt cacattgcgc gtatgcataa aattgatacg attgcgtttg
    17161 agagcatatt ccgtcatggc aaggtcatca tttttcggat cagaagcata ggatccgaca
    17221 cacatggtaa ttccattgtg ctctgaatca tagagattca aaaatcgttc aacggcttct
    17281 tgaccagtaa taatacgggg caatccgaaa attccatacg gagggtcatc aggatgaatg
    17341 gccattttga cgccagcttc ctcagccgtt ggtagaatcg ctttgataaa atactccaag
    17401 ttcgcccata aatcttcttc agagatattc tgacgataat tttcaataat cgccttcatt
    17461 tcttccttgg aataggacga atcccaacct ggtaagttca aatcatccgc cacaggatca
    17521 acacctgcta aatcagattt aaggaaagct aaagaagttg aaccatctgg aagtgggtgg
    17581 tgcaagtctg aacgggtcca gtcaaacaca ggcatgaaat tgtagcatac aactggaata
    17641 cctgcagccc ctacattacg gattgaagtt ttatagtttt caattaactc atcacgattt
    17701 ggcttccctt gtttgatgtc ttcatgaaca ggaatggatt caataaccgt aatttcaagt
    17761 cctgcctctt cgaccatttt tttcagctct agaatgtttt caaggggcca agcttgacca
    17821 actggcacat catagacagc tgttacgatt ccctgcatac caggaattgc cttaatctct
    17881 tccagtgtca caggatcctt tttcccatac cagcgaaatg acattttcat gatttactct
    17941 ccttctattg ttcaaaaaac tcttttgcat tgtaatagga tatggcttct acaaattgcc
    18001 ctaaacgatt gtaatcttct ggcacttcct catcaactat ccattgacca acataggtcg
    18061 ctaaaatgcg tctgaaataa tcatgccgtt gataagataa aaagctacgc gaatctgtca
    18121 acataccaac aaaattagca agcataccct gttctgcata ggcattcatc tggtcaatca
    18181 tgcccaactt ggtgtcattg aaccaccaac cagcaccaaa ttgtaactga ctacgaagcc
    18241 cttcctcatt ggactggaaa ttcgccaaag tattggccag agcaatgttg taacttggat
    18301 tgagattgta ccaaatcatt tttggaaggg cattttcctt gaccaagtta tctaacaaac
    18361 gattcaaatt cacagtcaga catgtctggt ctccaatcga atccacacct acatctgctc
    18421 caagtttttc aaacagtcct gtatggttgt tccgtaaggc accaaagtga acttgtgtca
    18481 caaagccatg tttcttgtac aatcggcaca attctctaaa gatagcagtc tgccatttat
    18541 tgatactgga ttggccagcc tctttacctg caagtcttgc tagtaaaatt tcatccaact
    18601 cttcgagggt agcctcttca taggaaatag ccgtaaaact gatgtcactt gctcggcaac
    18661 cgtgttgagc aaaataggaa acgcgctgac caagtgcctc tacaaaactt gcaaagtctc
    18721 ttaccgctac ccctgttact tcctccaagc gtttcataaa tagattgaaa tttcgatgct
    18781 cgataaaggc ttcatctggg cggaaagtcg gtgccactac agtatctatg gtcgagtcct
    18841 cagccaagcg cttatgccat tccaagctat ctagtggatg gtcagttgtc ccaataaagg
    18901 tcaccctagc atccgcaatc agcttacgtg gactaactcg atgttcttgc aaataagcat
    18961 tgagctgatg atagagtcgc tctgcatttt cttcggtcaa caattcctca acaccgaaaa
    19021 cctgtcgcaa ttccaagtga ctccaatgat agagaggatt tccgaaagcc cgttccaagg
    19081 ttcttgccca ggctttaaac ttatctagtt tacttgctga acctgtgatt tcttcttctg
    19141 agataccatt agcccgcatc aagcgccact tataatggtc accccccagc cacagatcaa
    19201 caatatcttc ataaacctta tcttcaaaaa tttccttagg atccaagtga caatggaaat
    19261 catagatagg aagctctgct attttcccgt aaagctcctt agcaggctcg ttttttagca
    19321 taaagttttt gtcattaaaa ctcatttcat ccctccaaag ctgcaacaaa actgcgagca
    19381 atcgtcgtta cactttcata gccttcagcc tgcactcgac ttgccagagc cgaaccgact
    19441 ccaacagcac aagcacctgc ctttttccaa tctgcaacat tttcaactga tacgccacca
    19501 gaaggcatca aatctacttg gggcactggt ccgtgaatat ccttgataaa tccaggcccc
    19561 aagacaccac cagggaaaag tttgataatg ggacatcccg cctgactagc tgtgacaatc
    19621 tctgttgcag ttgcacagcc tgggaagtag aatacctcag cctcttgcgc caagtcttga
    19681 atttctttat caaaatgagg actaaccagg aaactagcac ctgcatcaat ggccgcttgt
    19741 gccagcttaa gattcatcac tgttcccgcc ccgatgacta cggaagaatc gtatgagaac
    19801 tcctcttgta attctttgat aactgtcgct gcatttggag tcgaaaatgt aatttcaata
    19861 tttcgaatac ctcccaaaat cgcatggcga gcgatttctt tcgcatcttc ttcatctttt
    19921 ccgcgaatca ctgcaaaaaa gtaattttct tttaattgct ttaacatctt gacctccaat
    19981 tagaaagcgt tgtcattcat agctatagta tacaactcat cagatgattt gtcaataaaa
    20041 aagcaaaaaa tacccagaag aattcttctg ggctgtctat tttttatttc tatttatgat
    20101 cgttgagacc atgcaaggtc atatctttat cgaaccattc gcttaaaaca acctgtctta
    20161 ctgatataat atgtgctaac atgctatcat atgctgcaac aggatggcgt tgcttgatag
    20221 ccattaagat gttcctgtgg gcctgtaaac tatccgattt catctgacga tttgaataat
    20281 tttcattgat cagatgaata gattgattaa tgacgggcat cagacttgtc atagccagat
    20341 tcccactcat ctcagccagc atacagtgga atttcacatc caactccaaa tgcttcgtgt
    20401 ctccagcagc aacggcctct tcaatagcaa ggacaatttc ttctagtcga gcaatgtctt
    20461 cgtccgaggc aaactgagcg acacgctccg caattctcgg ttcaagcaaa taccgcactt
    20521 caaacaaatc tgtcgtcaac ttcacacggt ctcttaccaa agaaaaacct aggggatcct
    20581 ctgatactcc ttttttagag ctgatatagg ttcccgaccc ttggcgcacc tccagaatat
    20641 ttcgagtagc caaacttcga acagcttcac gaacagtcga acgtccaact tctaaatctt
    20701 gggccaattc atactcattt ggaagcttat caccaacttc atatcctctt tccaaaatca
    20761 attccaataa gcgttccgat gctttttcta ccaagggttt cgccatgtgc ttggtcctcc
    20821 aatacaactt tctatttgct actattatag ctcatttcct cttataatgg tagtttggaa
    20881 tggcagtcca acgtttcttg atttctctta caatttgctt gggttgtcta tttcttgaga
    20941 ataatccttt gtgatttcct tgaatgcgaa tgataccaac cgtggtttca aaatcagcaa
    21001 aattccagac ttgttcaccc actaaattag gaatagaatc aaagacgcga tggttcatat
    21061 catagtaatc cacctgaaat tcctctgtat aaggaatatc ccacatcgaa tgcaaacctt
    21121 gaagagtatc tgcaccatat tccgtaatca aaattggctt gtcaggataa agtttttgcc
    21181 aagtctccaa ctcttgacgg agccctttct ctgccgcctt caagtcacca tgagcaacat
    21241 accaaccata gtaacgattg agacagacaa catcgaccaa atccataacc tcatccttat
    21301 caggcgttgc tgtcataata ttgaccaagg tcacaggacg cttagacgga tctctgtccc
    21361 tcatgcgctg aatcagaggt tcaaagtaag cacgcgcgcc tttttcatgc cctgctggct
    21421 cattggcgac aacccacatc actacggatg gatgattttt gtcacgtgct atcaattcat
    21481 caatcaccaa ttcatgagca tccttggttt gcataacttc ccaggtgctt tttacctctt
    21541 cagaatcccc tgtcaaattc aaggctgcat tgaaaagctg gaataggcca actgctggca
    21601 cttcatcaag gacgacaatt cccaaacgat ctgccagccg catcatttcc tcagaatagg
    21661 gataatggga ggtcctaaag gaatttgctc caatatcttt aagcaaattc aaatccatca
    21721 gattggctgc ttcattgaaa ccacgcccat tgatgaaggt atcttcatgt ttaccaaatc
    21781 ccttgaaata gaaaggtttt ccattgatga aaaactgccc attttcaact gcaacactac
    21841 gaatgccgaa ttgttctgag taggtatcta gcaagttttc tccatcaaat aattcaactt
    21901 tagcagtata gagataggca tccaagacct cccaaaggcg tggatgttca atgaccattt
    21961 gtccattttc aagaagacct acttcctgtc cctcttgatc taaaatagac atacggatgg
    22021 aatcgtactg cccaactgtc ttcacatcaa cattcactac cgcctgagtc aaatcttgat
    22081 ttagctccgt ccgaataaca atatcctcaa tcctattttg gggacgttta tagagatgaa
    22141 ctgtccgctg gataccagca tagttgaaaa agtcaaaatt ttccttgacg gtcttcacaa
    22201 tttgaccatt ctcatccact tcttcgctat aattccctac tgggagggtt gtgtaattca
    22261 actcattatt agcacaaacc gtcaaacgga attgatcagc gtcgtataag tttgacggaa
    22321 tcaagcattc aaaaggtgtg aaaccaccct tgtgctcccc gattaactga ccatctgcat
    22381 agactttggc ctgatgtgtc accgaaccaa agcgcacaac caactcttca tcagctgata
    22441 cgacagggag agctaccata agttcatacc aattatctcc gacaaaacga cgtttgtcct
    22501 tatcaacaac aagatcatta aaagaactcg gtacaaccat tacttcatct gtatctaaca
    22561 gagtatgaac atcattgttc ccttgcttaa atttccatat tccatttaaa gaataaactg
    22621 agcgtgtttt tgtctgtatt ggatacaaca tactttttcc ttctttctat cgttttattt
    22681 cacgtgaccc ttttttcaat agcaaatcaa tatctgattg actgatgaca ttaatgtccc
    22741 cttcaatggt atgtttgaat tgaaaactag ccatacctaa gtcgagtatt tcccgtggag
    22801 atttttcctg caaatagccc aaaataattc ctgctgtaaa ggcatcccct gtcccaactc
    22861 ggtccagaac ttgaatggat tctttttccg tttcataaag aataccatct tgatacaaat
    22921 atgctttcag caaatattca ttattgtagg tcatttccct ctgggtaaaa gcaagaccct
    22981 gcaaagaata agtctccgcc agacctttaa ccaccgctaa caagacttct ttattttcat
    23041 aagggcgctt caaccccaat tcatccttca gatcttttcc agattcattg aagagttgaa
    23101 taggctctag accaaagcaa atatctgcta aacctacaaa aggagataat ttctccctcg
    23161 cttcttcaaa agaagaccac aaactttctc gataattcaa gtcaaaggaa accttaacac
    23221 cctgaccctt tgccatttcc atcaaacgaa aagccagtcg ataaatatct ggattcaaag
    23281 cgaccgttat accactgaca tgaaaccaat cgacaccgtc aaacatgcct tccaaatcat
    23341 aatcttcttc cttggataag ctgaaagcag aataatcacg gtcgtaggtc acctgactgg
    23401 gcctgagcga aaaacctttt tgatagtaat aaagtccaag ccttccctcg tttcgaatca
    23461 catatttctg tccaatctgc cgtgcaaaga gaaagtgttc tgccattttt cccacttcat
    23521 tcttaggcag tgccgtcacc aactcaactg aatgccccag ctgagccaag ctggctaaaa
    23581 cattcaactc cgaaccacca aactgacaat ctaaactggt agcctgtgtc aaagtttgat
    23641 actgcggagg agatagccgc aataaaactt ctccaaatgc taagattttt ttcataccgc
    23701 ctcctagatg aaagacccag ctggactcct ccaactaggt cgttattgta ttatttatcg
    23761 tcgtattgat caaccttata ttgagttaca tcaacataat ccatatcaga taatggaaca
    23821 tttttcgcga ttgcacgcac acgttcctca tcttttgccg ctttcataac atggattttc
    23881 tcttgaatac gtgccatttc ttcacggtct agtttgtaga atttcatcaa gaacaaggat
    23941 acgctcaata ccgcggctgg aatcactgtc aataggacaa tcagtgccat tctcaaatct
    24001 gtagagaatg ccgtttcaac ggttgggtac tctttaccaa aaccgatacc tgctaataca
    24061 aatccaacaa ccattggggc aaatgaagaa gcaattgagt ctgtcaatga gaagatagtc
    24121 ccaatcatac ctgacaagta acgaccagat actgaagttt catagtctgt aatatccgca
    24181 cccatggtca ataccaaacc agatggagca ctagatgcgt agcgagcaac gatataaaca
    24241 acaaagaagc cgattgtgta gagattccaa tttgtcaaat ccaacatacc tggtttagct
    24301 gaaaagagca tcgctgccaa gatcacaaga ccagcaatcc caagttgaag cgctgtaata
    24361 taggcaaaac gtaaaccttt acgacgagcc aattgcgcag caccaactgt tacaagaata
    24421 cctggcaaaa tcaaaagcat agacattttt ccagaaagag catagtcacc gaagataata
    24481 ccatacagca taaccccgat aacggaatct ccaaacagtt gagcaacaaa ttttacaaaa
    24541 gctgcagaga ttgaaagaac ctgcaaaggt ttgtttcctt tgataacttt ccagtagtct
    24601 ttcaacttag tttcttgtgt cttctcacca agaccaaagt atttcttatt gtctttctcc
    24661 caaataccga taatagcaag aatacccaga acagctgaaa ttactactac accgaggaac
    24721 aattcctgga agaaacttgg agtgaaacca ccatgtttcg gaaccaatgt ccctgacaca
    24781 acaacctgac taccagtcat caacacagtt gtcgcaatac catcaacaat attaaagatt
    24841 ggacgttgct ttggatcatt ggtaagcgca acttgtcctg cttttgtaat cgtctgttga
    24901 agtgaatatc caattttatg gataatcaaa acaaggatga atagaggaag acggagactc
    24961 tcattaactc cacttaaacc taacatcata aaaagagaag ctgctgtaat gatattcccc
    25021 aaaaccaaga taggacgata tttaccaaac ttagtatccg ttttatcaat gataactccg
    25081 attgtaggat caatgaaacc atcaaagata cgaatatagc ccatgagttg actaacaaac
    25141 agggctgcaa gaccaagcac acctgtcgat aaataagtca cgaaagtaaa agcaaccaag
    25201 taaatattcg tcgatgaatt gttcatcgca aataatatga tttgccataa cttggctttg
    25261 ttataagtaa cgtcttcgac acgttgctca acatgttttt ccattggaaa ttcctcctaa
    25321 atgttttcta cgacaaagtc gtaagcgttt tctttaacta tattctaata ttcatcagat
    25381 gatttgtcaa ctgtttttgt aaatattttt aattatacgc aaaaaaagac gatttcacgt
    25441 gaaaatcgtc tgatatattt gatttagcga ggaagaattc atctgactat ttattgattt
    25501 actgcaattt ccccactatg atagttgata ctgagaccac tctgcacatt tggaacgaac
    25561 acattgaact ctaggctacc atctgctgct tttgcctcta gatggcttcc gacaggaaca
    25621 aggtcttcac tctcagcata caccaaggtc acacgatagc ggatacgctt atttttatcc
    25681 aaggcccgcc gaatctgact ttcaaaataa ttctgcccag ttgaagtttg gtcgttagct
    25741 tggttggacc aagctgtttg aactgcaata ttcttaggat tgctggttga agcatcgaag
    25801 ccagacaatc caccaatcaa agcataacct aggaggtgac cacggtccac tgcatggtca
    25861 tattctccag ttaaatcatg gatctgatgc caacccgcag gtgtccaaga agttcgacca
    25921 tttcctgttt cttcacgatc cttatactga cgtgtagatt tagctaaaag cgcattggct
    25981 actgttggaa ccgtttctcc ctggactgtc tttgtcttat tatcaccata aggtacactg
    26041 gcaaccgatg catctaaatc tgtttgatta ccgttaataa taaatgctcc agcgccattc
    26101 cattcaatcg aattccccag ttgctttttt acatcttctg tcaataccga actagccagt
    26161 tcctgactag gtgtgccttc acttgcctta gactgattga cataatagga ataatcagca
    26221 acgttactgc tcttgttatc acttaaaaga tagccacccg ctacgacaac aatcgtagcc
    26281 aataagctga gcagactcat tgcttgtttt cttacatttt tcttcgccat tttctctcca
    26341 tcaaaaaagc aggtccagcc tactttcctg taaatttacc gattagttct tgccacttag
    26401 ctggtgacaa caccgcaaat acattgtctc catctcctat gacaccgtaa ccaaccatta
    26461 atcctaaaac aaacaccaaa atagcaatca acaaaacaac tgctactaag attaaatttt
    26521 taccaacata gctaagatta tccttatcca ttttcatctt ctccactcac acgttcaatc
    26581 gttgcaccta aagcagctaa tttctcatga aaacgatagt aacctcgatc taagtgcgtt
    26641 aatttaccta caatcgtttc accttcagca accaaaccag ccagaatcaa agcggcactt
    26701 gctcgtaaat cagtagacat aacctgagca ccttgcagag caagtcctcc cgtgatgata
    26761 gctgtatctc gtaaaatttc cgaatgcaaa tccatccgac gcatttcttc caaatgctgg
    26821 aaacgatttt caaataccgt ttcaatcatg gtagattcac cctttgcaac tgccattaga
    26881 gctgtaaatt gagcctgcat atccgttggg aatcctggat ggggcaaggt ttttactgtt
    26941 acaggtttaa gcttatccac ttgcgaacga actcgaatcc cttcagcttc ttccgtcacc
    27001 tcaactccca tttccaacat cttagaaatg agtggacggt tatgctccca gacagcgtcc
    27061 ttgaccaaga catctccacc agtcattgcc gctgccacca taaaggtacc cgcttcgata
    27121 cgatcttgca ccacttgatg ttctgcgcca gtcaattctt ctacaccagt aatcgtaatc
    27181 gtctctgtac ctgccccctt aacttttgcc cccattttgt ttaggaaaat agccaagtca
    27241 acaatttcag gttctcgcgc tgcattttct aataccgttg taccctgcgc cagagttgca
    27301 gccatcatca aattttgcgt tgccccaaca cttgggaaat caagatagat atgagctccc
    27361 tgcaagttct ctgcactcgc ttcaatataa ccagctcgtt gtttaatttt agcccccata
    27421 gcttgcaaac cttttaagta caaatcaatt ggacggctac caattgtaca acctcctggc
    27481 atagaaacct tagcataacc attgcgtgcc aaaatcggac caagaataac aatagaggcg
    27541 cgcatttgac tcacatactt ataaggagtt tcactaccaa gtttacctgt tgcgtcaata
    27601 tcgatagtct ttgtttcctc gtcaaatttc acacgaactc ccagaccacg tacaacatta
    27661 ttcattgtat agacatcaga caaaatagga acctgagtca atttggtttg cccttgactt
    27721 gctagaactg ttgctgccaa taaaggcaga acggcattct tcgccccctc aatctcaacc
    27781 tgtcccttca aaccgttttt actacctgta acaataattg tatccatttc ttatcctttt
    27841 cttatcttaa atcacatatt tgcaaaagag cgtcccacca tcaacaattc taaaaagaaa
    27901 gtcgagacta agtaccccag tgctattgcc agaaagagaa tcagcaaatt gattttacgc
    27961 tgattatccc ccgtcacctt caaccaccgt gaccaatcaa ctgttgtaac caagagatga
    28021 tgagccagat agataaacaa tatatgacta aaaaactgta aaattgaaat taccatgttt
    28081 ccattatacc atgaaatta
//
LOCUS       DASGCC010000009        27521 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.009, whole genome shotgun sequence.
ACCESSION   DASGCC010000009 DASGCC010000000
VERSION     DASGCC010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 27521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27521
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.009"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(80..685)
                     /locus_tag="U1404_000247"
     CDS             complement(80..685)
                     /locus_tag="U1404_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000974722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM5347238.1"
                     /translation="MAIILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALE
                     KHPEIGEDLVALLSDVEQIPADIRQALINNGGGHLNHALFWELLSPEKTEISAELAAD
                     IDATFGSFDAFKEAFTAAATTRFGSGWAFLVVNKEGKLEVISTANQDTPIMQGLKPIL
                     ALDVWEHAYYLNYRNVRPNYIKAFFEVINWDKVNELYKAAK"
     gene            complement(798..1829)
                     /locus_tag="U1404_000248"
     CDS             complement(798..1829)
                     /locus_tag="U1404_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM5347239.1"
                     /translation="MTVIEQIEKLKKEKLELLTVLCGEDIGQYQIAKDLLLRKLDFDA
                     ADLGFAYFDMSEADYHQVDLDLVSLPFFSDEKVVILDYFADLTTDKKRHLTDDELKQF
                     EVYLENPVETTCLVILAPGKLDSKRRLVKLLKRDGLVLEANPLKEMDLKNHFQKEIMR
                     LGLQMGGEVFQYLLEKSNFDFAEISKNLVFLQSYKGKETIEISDIDAAIPKTLQDNIF
                     DLTQLILQSKVDEARNLVRDLRLQGEEEVKLIAIMLTQFRTYLQVQILLEQGRGEQQI
                     VAELSTIMGRKVNPYQVKYALRDSRHLSIGFLKKVVKLLIDTDFQIKTGQFDKDYLFD
                     LLLLKIATA"
     gene            complement(1979..2569)
                     /locus_tag="U1404_000249"
     CDS             complement(1979..2569)
                     /locus_tag="U1404_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347240.1"
                     /translation="MKLRKVSFILVTFVIGLLSLSSVKAETSMFVPVGQQNVPGVEVA
                     PFRTGSDSIHVHVGSFGYVATYINGERLKVEPVKHELKCPSYTTENCQTKEWYTSGER
                     ADGSGDYVVKLNKKLEEGDVVTLKFADDGNLYFGQLVYKSEKKRVEQTQKEQEDEYAD
                     ALFKRSIEEEENKTWRDRIKDTFQDAWWNFKGWWNS"
     gene            complement(2677..3432)
                     /locus_tag="U1404_000250"
     CDS             complement(2677..3432)
                     /locus_tag="U1404_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEM5347241.1"
                     /translation="MIKVEEILSTLSPNQKVNYDKVFQKMASTWQEAGLRPKILMHVC
                     CAPCSTYTLEYLTQYADVTIYFANSNIHPKAEYQRRAAVTAQFVKEFNQKTGQSVGYL
                     EADYSPQEFFKKTQHLANEPEGGDRCKVCYDYRLDKTAEKAVELGFDYFGSALTISPH
                     KNSQTINAAGIEVQKLYGTQYLPSDFKKNGGYQRSVQMCEEYDIYRQCYCGCVYGANA
                     QGVNLVQVKKEALEFLKTHRDYSHIPFKVLDKN"
     gene            complement(3679..4389)
                     /locus_tag="U1404_000251"
     CDS             complement(3679..4389)
                     /locus_tag="U1404_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000062217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347242.1"
                     /translation="MAMLEVKNLSVNYGVIEAVKDVSFEVNEGEVVTLIGANGAGKTS
                     ILRTISGLVRPSAGTISFLGNEIQKVPARKIVADGLSQVPEGRHVFAGLTVMENLEMG
                     AFLRNNREENQANLKKIFARFPRLEERKNQDAATLSGGEQQMLAMGRALMSQPKLLLL
                     DEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAIADRGYVLETGKVVLSG
                     TGKELLASEEVKKAYLGG"
     gene            complement(4389..5153)
                     /locus_tag="U1404_000252"
     CDS             complement(4389..5153)
                     /locus_tag="U1404_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347243.1"
                     /translation="MALLEVKDLTKNFGGLTAVGDVTMELHEGELVGLIGPNGAGKTT
                     LFNLLTGVYEPSEGTISLAGTILNGKAPSKIASLGLGRTFQNIRLFKNMTVLENVLIG
                     LGNHGKSEVFASFFRLPAFYKNEEALKTKAIELLKIFDLDGDADTLAKNLPYGQQRRL
                     EIVRALATEPKILFLDEPAAGMNPQETAELTQLIRKIKEEFGITIILIEHDMSLVMEV
                     TERIYVLEYGRLIAHGTPEEIRNNKRVIEAYLGGEA"
     gene            complement(5153..6100)
                     /locus_tag="U1404_000253"
     CDS             complement(5153..6100)
                     /locus_tag="U1404_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM5347244.1"
                     /translation="MKQNLKVNAIWLAILLAGFGLIQGLVSAGILNFYYIQIVQQIGI
                     QIILAVGLNLIVGFSGQFSLGHAGFMAIGAYAVGILGKMMPTYGGFAIALIVGMLISG
                     AVALLVGIPTLRLKGDYLAIATLGVAEIIRILIINGGSVTNGAAGIMSIPLFTSWPLV
                     YIFVIITTLVTVNFLRSPMGRATISVREDEIAAESVGVNPTFVKVSAFVFGAMTAAIA
                     GGLHAGYVGTIVPKDFAFMTSVNVLIIIVLGGLGSITGTFVAAIVLGILNVFLKSYSD
                     ISMIIYSLALILLMIFRPGGLLGTKEFSVAALLKKKEVK"
     gene            complement(6103..6990)
                     /locus_tag="U1404_000254"
     CDS             complement(6103..6990)
                     /locus_tag="U1404_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM5347245.1"
                     /translation="MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDLYMMGA
                     FMGYFLLNNLNFIADGGTRFFVALILAMVGTAILGVVIEFLAYRPLRNSTRIAALITA
                     IGVSFFLEYTMIKFFTADVKAFPQAIEAVTFNLGPVSVTNIQLIILGVSLALMVALQL
                     IVKRTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLLGLYYNQIE
                     PLMGMTPGLKAFVAAVLGGIGIIPGAALGGFVIGIIETFTYVIEFDTFRDAIVYTVLI
                     IILLVRPSGILGKNVKEKV"
     gene            complement(7196..8365)
                     /locus_tag="U1404_000255"
     CDS             complement(7196..8365)
                     /locus_tag="U1404_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5347246.1"
                     /translation="MKTRKFAVALATFASAALLAACGNVSTTNTSAAGSSVGDTFKIG
                     YNLELSGAVSSYGQTEEKGANLAVKEINAAGGIDGKKIEVITKDNKSETAEAATVATS
                     LASEGANVVIGPATSGASAASIPALTSAGVPMITPSGTQTNLVVNDKGEVQEYFFRTT
                     FTDGYQGQIMAKYATENLSAKKVVLYFDNSSDYGKGVAEAFKKAYTGEIVSEITFASG
                     DKDFQAALTKLKDKEFDAIIMPGYYNETGTIVKQARGLGIDKPILGSDGFDSPQFTEL
                     ATASAASNVYYLSGFVTSASEKAKAFYDAYVKEYNEEPSMFSALAYDSVYMAAEAAKG
                     AADSAAVKANLAALKDFKGVTGTMSVDKEHNVIKSVYVVSLTNGEESSVDTISID"
     gene            complement(8496..8768)
                     /locus_tag="U1404_000256"
     CDS             complement(8496..8768)
                     /locus_tag="U1404_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HEM5347247.1"
                     /translation="MFEKKNRTCLTVYLHYNRDARKLSQYGDIVYHSKRLRYVLVYMD
                     QELVEATILKLKKERFVKKVVPSYIKELDQNFVGNLWRDEEPSVVG"
     gene            complement(8895..9485)
                     /locus_tag="U1404_000257"
     CDS             complement(8895..9485)
                     /locus_tag="U1404_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEM5347248.1"
                     /translation="MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIA
                     QLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIA
                     SSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
                     TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK"
     gene            complement(9602..10231)
                     /gene="upp"
                     /locus_tag="U1404_000258"
     CDS             complement(9602..10231)
                     /gene="upp"
                     /locus_tag="U1404_000258"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEM5347249.1"
                     /translation="MGKFQVISHPLIQHKLSILRRTSTSTKDFRELVNEIAMLMGYEV
                     LRDLPLEDVEIETPITKTVQKQIAGKKLAIVPILRAGVGMVDGLLSLVPAAKVGHIGM
                     YRDEETLQPVEYLVKLPEDIDQRHIFVVDPMLATGGSAILAVDSLKKRGASNIKFVAL
                     VSAPEGVKALQEAHPDIDIYTAALDEKLNEKGYIVPGLGDAGDRLFGTK"
     gene            complement(10311..11927)
                     /locus_tag="U1404_000259"
     CDS             complement(10311..11927)
                     /locus_tag="U1404_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM5347250.1"
                     /translation="MPEIQKTDWWKKSVIYQIYPRSFQDSNGDGVGDIRGIISRLDYL
                     HELGIDAIWLSPVYQSPMDDNGYDISDYQGIAPEFGTMEDMEELIAEGHKRNIKIIMD
                     LVLNHTSDEHFWFQEALKGPDNPYYDYYVWADEPNELRSTFSGSAWEYVPHLNKYYLH
                     QFSVKQPDLNWKNPALKQEIWDMINFWIEKGVGGFRLDVIDLIGKEPEKLITADGPTL
                     HPLIQELNEKTFGAYDLVTVGETWSANPENSQLYSHPDRKEFSMIFQFEHVGLDQQEG
                     KEKWDLAPLDPARLHNVLSKWQTELVGKGWNSLFWNNHDLPRAISRFGDDRPAFRELS
                     GKMLAIYLHFMSGTPYIYQGEEIGMINAPITDISQADDIETRRMYAERIENGFTKEEL
                     ITSINAKGRDNARRPMQWTAEEGAGFSTGQAWLALGDTVKDINVEKALADKQSLFYTY
                     QKLIALRKEYPCMSEGKYEVMETGNSSVMAYRKYDEQDDFIILVNFSSQEQAYTIAVE
                     EYSIFMNNYENEEAINKGMLRPFEAIVFKK"
     gene            complement(12000..13448)
                     /gene="gtfA"
                     /locus_tag="U1404_000260"
     CDS             complement(12000..13448)
                     /gene="gtfA"
                     /locus_tag="U1404_000260"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM5347251.1"
                     /translation="MKIKNQAMLITYSDSLGKNLKDLKKVLEGPLKDVVGGIHILPFF
                     PSSGDRGFAPMDYTKVDPAFGDWSDIEALSKDYYLMFDFMINHISAKSPYFLDFLEKK
                     DQSAYADLFIRYKNFWPNGEPTQEDVDLIYKRKPRAPYRIATFADGSEEKVWCTFDEQ
                     QIDLDVTTETTRQFIQENLEQLAEHGASIIRLDAFAYANKKIGTNCFFVEPDIWEMLH
                     FPRQLLAPKDVEILPEIHEHYTIQQKIAEQDYYVYDFALPMLVLHALYSGHVNRLVHW
                     MEICPRKQFTTLDTHDGIGVVDVKDLLTDEETEETREALYAQGANVKKIYSTEAYNNL
                     DIYQINCTYYSALGNNDQAYLLARVLQCFAPGIPQIYYVGLLAGENDIELLESSKEGR
                     NINRHYYDLEEIEQEVQRPVVQSLFKLLKFRNTSPAFDGEFSVKMLDETSMEIFWNNQ
                     DAGVSARLTANLKEKSFEIVEIEEGKITTIEL"
     gene            complement(13518..14348)
                     /locus_tag="U1404_000261"
     CDS             complement(13518..14348)
                     /locus_tag="U1404_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5347252.1"
                     /translation="MNTQKQKNWWVYLVLFSGILFMFIPLLVTIISSFKPTKEITSNF
                     FGLPENFTLNNYERLFNDGIVQYFGNSALITIVAVGLILLVIPMAAFAVARQMKRQTV
                     FNFIYFFLIIGIFVPFQVIMLPMTKLMSSLGLNNIVGLIILYLTYAVPQALFLYVGYI
                     KTIVPEEMDEAAAIDGCDKFTMYWKIIFPLMKPMHATVLIINALWVWNDFLLPLLVLN
                     RDQSMWTLPLFQYNYQGMYFSDYGPSFASYVVGIIPILLVYLVFQKHIISGMTSGSVK
                     "
     gene            complement(14359..15231)
                     /locus_tag="U1404_000262"
     CDS             complement(14359..15231)
                     /locus_tag="U1404_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5347253.1"
                     /translation="MNQKGFIAKYWPYLFVAIPIGLQLIFFFYPLLTGIYYSLTDWNG
                     LTSDFSLIGIQNYLDILKNPDFYTSMTFTIIFTIGLVIGEIVIGIWLASLLNRKIKAV
                     GFFRTWYFFPAVLSTVTLGLIFVQLFNYGFTQIGELLHIDWLMENLLVQENTVIPAVL
                     FVALWQGLAMPVIIFLSGLQSIPEDVKEAAAIDGATRSQQFFNIELPFLLPSISMVFI
                     LAMKSGLTAFDLIFALTSGGPDGKTESLGLLVYNYAFVDNKFSYANALAVVLFIFIIV
                     ISLIQMRISKKFEI"
     gene            complement(15379..16617)
                     /locus_tag="U1404_000263"
     CDS             complement(15379..16617)
                     /locus_tag="U1404_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5347254.1"
                     /translation="MKFTTFVKSASVIAFASLLAACGNGSAGSSDKVELEYFSQKPEM
                     QATLQEIITDFEKANPDISIKFSSVPDAETILKTRMANNEDPDIINVYPVAADFDAWA
                     KDGRFLELGEDAGVGNLKEGAAEFYAIDNKIYSLPLNTNVYGIYYNKAKFKELGLEVP
                     KTTAEFEKLVATIKDKGETPFALSLADSWSLNGFHQLAWVSAAGGYDQAQDILVRSGK
                     GSITADNPATQAVVKSFELLHDNGQSGFSGAKYADAVAAFADGKALMMPQGSWAAAVI
                     NQQNADLDYGIFAFPGEKEGDDVTIGGADLALSISAKTEHPEEAKKFLAYMSSKEVMQ
                     KYYDVDGSPTSVEGVETEGKFPEIEGVAQYAFTDKQIAWLHKEWTSQNDFWTIAVETI
                     KDPKADKLANELNAFFDPMK"
     gene            complement(16871..17326)
                     /locus_tag="U1404_000264"
                     /pseudo
     CDS             complement(16871..17326)
                     /locus_tag="U1404_000264"
                     /inference="COORDINATES: protein motif:HMM:NF012475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
     gene            17565..18581
                     /locus_tag="U1404_000265"
     CDS             17565..18581
                     /locus_tag="U1404_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5347255.1"
                     /translation="MKQQKVTFADIAKHTNFSKTTISRYFNNPDSLTDASKQKIERAL
                     IELGYQENKLAKVLAKGKTEFIGIIIPNLFLHFYAAILEEILATYKKNNYKFLVFIGD
                     DNIETEREYIQELLAYNIEGLIVLSHTITSEELASYNVPVVSIERESQYISSIETDNY
                     LGAIQATGSLIKNNCDILIHINGKLKENIPAYNRVKGFETMCQDSDVEYRIFATDLGS
                     SYHQIQTELQHHFETIEANYQGKRKGIFFANDTYASIFVNILFQKYGHFPEDYRIVGF
                     DDSPIASETIIPLTTIRQDLKAISHTALEVLSQQIEERKKEIISPIQHREIAPKLIKR
                     STTF"
     gene            complement(18641..19873)
                     /locus_tag="U1404_000266"
     CDS             complement(18641..19873)
                     /locus_tag="U1404_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5347256.1"
                     /translation="MKMKTFLKCASVCAFASFLVACGNASSSDKVEIEYFSQKPEMQA
                     TLQEIINDFEKENPTIDVKFSNVPDAGTVLKTRMANNEAPDVINIYPQNADFKAYAAD
                     GRFLEIGDDAGLSHLKDGAVTPYLVNEKNYTLPLTANAYGIYYNKDKFKELGLEVPTT
                     YAEFVALVDKIKSDGSAAPFALSLNDAWSLNGYHQLAWVTVAGGFDGAEDILIRSAKG
                     AIQDDATTKAVLERLQLLKDNGQKGATGALYADAVAAFAAGDALMLPQGTWAATAVNQ
                     QEPEFEYGMFTFPGDKEGGDYTIGAADLALSISADTEHPEESKKFLEYLSRPEVIQKY
                     YDVDGSPTSVEGVDTEGKFEETAGVTQYAFTDKHVVWLQSEWESEDEFWNITVEMVKN
                     PNSAELVKKLNAFFDPMK"
     gene            complement(19886..22060)
                     /locus_tag="U1404_000267"
     CDS             complement(19886..22060)
                     /locus_tag="U1404_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM5347257.1"
                     /translation="MNVIEIYNEKQIFHLKTREFSYIIQVLETGDLVHRYFGKKIEKF
                     SDGNKITYLDRSFSPSPITGDRTYSLDVLPLEYSSNGLGDFRTSALDVRNEFGVTLDL
                     KYKEYRLYKGKKELRGLPASFGNQEEVESLEIDLYDQLTDITVTLQYSVFEEASYLAR
                     SATIQTGKYPCKLEKVLSATLDFPHQDFIVHSLAGRYAYEKEWTQTPLTKGQYSIGSI
                     RGASSHSRTPFLALASPDASEDKGDVYAAHLVYSGNFTAFVETTAMETSRLGLGLESH
                     YFSWQLDKDDRFQTPEVLLSYTDKGFTGMTQNSHHFITKHLIRSSFVNKPRPILINNW
                     EATYFEFTEEKILQLAQVASRAGIELFVLDDGWFGKRNNDESSLGDWKVNLDKLPNGL
                     NGLADRINELGMKFGLWFEPEMISIDSDLYREHPDWAIRTEGRLPIYSREQLVLDLTK
                     QEVCDYIIDSVSSILESANISYVKWDMNRNITNIPEGLANDQRFEFHHRYMLGLYRVL
                     DHLTKRFPDILFESCAGGGGRNDLGIMYYMPQAWASDDTDAIERLSIQEGTSLIYPTS
                     SIGAHVSAVPNHQVGRITPLATRGNVAMMGGAFGYELDLTKLSEKELDEISQQIETYH
                     SIRETIQFGQLYRLKKTSNTWAANYVSQDKNQAVFTFVKILAKPEAPLLHVRLKGLDP
                     DALYECPQLGETFYGDELLNIGLTMPHVQKDYFSVQYIFNKI"
     gene            22165..23004
                     /locus_tag="U1404_000268"
     CDS             22165..23004
                     /locus_tag="U1404_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5347258.1"
                     /translation="MNILNIYNELDSHNFDLNVDHYGAEQCDKGYSFGPTIRDNFVLH
                     FITKGRGKILVDGKTSYLAAGDLFILPKDVSIFYQADDIDPWTYIWVGFSGSRAKDLL
                     NQSQLLENYYLHSNLESPILGYMHQINHVQMHPIPSITELVLIGYLNQLLAALIEEFP
                     SETLIKPETQTKHYVQHAIKMIHNHYAHPIKVSEIADFLALSRSYLYKIFKQETGYSI
                     KDYILQVKMNRSCQLLEDASRSITEIAYSVGYQDPLTFSAAFKNYFHMSPTEFRKTQK
                     NKD"
     gene            complement(23036..24196)
                     /locus_tag="U1404_000269"
     CDS             complement(23036..24196)
                     /locus_tag="U1404_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5347259.1"
                     /translation="MTQYNFIDSPNRLSQHAEKWRKVETDKELLPLWIADMDFEPLPE
                     IRQVIRDYADHHVFGYPYASDSLYQSIIDWEDRQHGYKIERESILLIEGVVPALSMAI
                     QSLTEEGDAVLINTPVYPPFARTVKLNNRQLVANSLVDVDGIFRLNLNQLEKDIVENQ
                     VKLYIFCNPHNPGGRVWTREEVLAIGRLCQKHSVILISDEIHQDLILYGHKHYSFNTV
                     DESFKEFSIILSSATKTFNIAGTKNSFAIIENPSIRKTFAKRQLINNQHEIPTIGLLT
                     TEAAFTYGDEWLKELKVILERNIDFVEEYLATHTRIKVMKPQGTYLIWLDFSAYELEH
                     AELFDILHCKAKLILNDGLTFGKEGKHHARLNAAAPFDVIEEACQRLGKVFG"
     gene            complement(24200..25291)
                     /locus_tag="U1404_000270"
     CDS             complement(24200..25291)
                     /locus_tag="U1404_000270"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HEM5347260.1"
                     /translation="MTDYKIDTILAHTGINSDERTGALISPIHLSTTYQHPEFGQSTG
                     YDYTRTKNPTRASLETTLAAIEKADYALATSSGMAALVLLFNGFPVGSQVVAARDLYG
                     GSFRWFNEQESIGRFQFTYANTEEELIAAITEETDYVYLETPTNPLMVEFDIAKVSAI
                     AHAKGAKVIVDNTFYSPIYQNPLVLGADVVLHSATKYLSGHNDVLAGALMTNDQDLYD
                     KLFYDQNTSGPTLSPLDSYLLMRGLKTLSLRMERTTQNAQKIVAYLEKSPAVKQVYYT
                     GKGGMISVKVVDESRIPHILNTLKVFTFAESLGGVESLITYPATQTHADIPAEIRHSY
                     GLTDDLLRLSIGIEDAEDLIADLKTALEG"
     gene            25493..25759
                     /locus_tag="U1404_000271"
     CDS             25493..25759
                     /locus_tag="U1404_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347261.1"
                     /translation="MKFQFNKHFYRYSAFYSMIFWTCFFLSDILIDPSQTPAWYSLLA
                     CLIIFINAIRVFFFKEEKELTRMGYIFYIGLIVVIVYLRFILGK"
     gene            25773..26026
                     /locus_tag="U1404_000272"
                     /pseudo
     CDS             25773..26026
                     /locus_tag="U1404_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028405.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            26036..26287
                     /locus_tag="U1404_000273"
     CDS             26036..26287
                     /locus_tag="U1404_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347262.1"
                     /translation="MFKEFNKEYYRSLNFYLMIMLFLGSIGEWLNKGPSLWLGLLLFA
                     TVGTARSAFWSKEWTLKANWQIYLCIAFLLVGAWVEFFV"
     gene            26543..>27521
                     /locus_tag="U1404_000274"
     CDS             26543..>27521
                     /locus_tag="U1404_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5347263.1"
                     /translation="MDVLYQSCAGIDVHQANIVVCILHGPLTSTRPKREMATFDTTTK
                     GLRACHDFLSQFHVEAVGMESTGVYWRPVWHALCDDFKLILAQPAHMKAIPGQKTDKK
                     DAHWIAKLTRIGLLPRSFVPDEAIQELRELTRQRKHYVESRNRETNRIHKILQSGGIK
                     LTTYIEDIMGLSGRNLLQLLVDGTPITPRIVHQSVYTSLKKKVPQLLEALDGYFSDHH
                     RFMLKQSLEIYDFYQKQIELLEERMNVYLSQYENHVEILDSIPGIDVITASVIISEVG
                     VDMSQFPTAGHLASWAGLCPGNNESAGKKRSTKIRHGNSYLKKCLCQAAF"
BASE COUNT         8286 a         5879 c         4998 g         8358 t
ORIGIN      
        1 ccccttcttc ccttacacaa ttctctcaaa aataatcctg gcaactaaaa aatctcttcc
       61 caaaggaaga gaactattct tatttagctg ctttataaag ttcgttaacc ttgtcccagt
      121 tgattacttc aaagaaggct ttgatgtagt ttggacgcac attgcggtag ttgaggtaat
      181 aagcatgttc ccaaacatcc aatgccaaga ttggtttcaa accttgcatg attggtgtgt
      241 cttggttagc agttgagata acttccaact taccttcttt attaacaacc aagaaagccc
      301 aacctgaacc gaaacgagtt gttgctgctg cagtgaaggc ttctttgaaa gcatcaaatg
      361 aaccaaaggt tgcatcaata tctgctgcca attctgctga aatttctgtt ttttcaggtg
      421 aaagcaattc ccagaaaaga gcatggttca aatgaccacc accgttgttt atcaaagctt
      481 ggcggatgtc agctggaatt tgctccacat ctgacaaaag agctaccaag tcttcgccaa
      541 tttcaggatg tttttcaagt gctgcattag catttgcaac ataagtcgca tggtgcttat
      601 cgtggtgaag ggtcattgtt tctgcatcaa tatgtggttc caaggcatcg tatgcgtatg
      661 gaaggtctgg taaaataatt gccattttcg ttttctccta tactaagtga tagttctatt
      721 ctactccaat gtgagagcct tttcaattta tttgtctgaa accacggttg accctcgatc
      781 taagaatact ctttttacta tgcagtcgcg atttttaata atagcaaatc aaataaataa
      841 tccttatcaa attggcctgt tttaatttga aaatctgtat cgattaggag cttgacgact
      901 tttttcaaaa atccaatgga cagatggcgt gaatcacgca aagcatactt tacttggtag
      961 ggattcacct tacgccccat aatagttgat aactcagcta ctatctgctg ttcccctcgg
     1021 ccttgctcta gtagtatttg cacctgtaga taggttcgaa attgggttaa catgatggca
     1081 atcaacttaa cctcttcctc cccttgcaac cgcaagtcac gaactaagtt gcgagcctcg
     1141 tctaccttgg attgtagaat taactgtgtt aaatcaaaga tattatcttg tagtgttttg
     1201 gggatagccg catcaatatc tgaaatttca atcgtctctt ttcccttata agattgaaga
     1261 aagactaggt tcttactgat ttctgcaaaa tcaaaattgg acttttctaa aagatattga
     1321 aaaacctctc ctcccatctg caatccaaga cgcattatct ccttttggaa atgatttttc
     1381 aaatccatct ccttcaaagg attggcttct aatactagtc catctcgttt gaggagtttg
     1441 accagacgac gcttactgtc caacttaccc ggtgctagaa tgaccaaaca tgttgtttcg
     1501 acaggatttt ccaaatagac ctcaaactgt ttgagttcat catctgtcaa atgccgtttt
     1561 ttatctgtcg ttaaatctgc aaaataatca agaatcacta ctttttcatc tgaaaagaag
     1621 ggaagagaaa ctaggtccaa gtctacctga tgataatcag cctccgacat atcaaaatag
     1681 gcaaaaccta aatctgccgc atcaaaatca agcttccgca gaagtaagtc tttcgctatt
     1741 tggtattgtc cgatgtcttc accgcataaa acggtcagaa gctctaattt ctcttttttt
     1801 aatttttcaa tctgttcaat tactgtcata aaaacctcaa aattcttttc tcattgtacc
     1861 acaaaaagag cctagacata aagtctggac tctttcattg aaatttatat caggaaggta
     1921 gaaaaaatta attgataatc actccaaatg acctattttc caaatagcag ttcctttgtt
     1981 agctattcca ccaccctttg aaattccacc aagcatcttg aaaagtatcc tttatccgat
     2041 ctctccaagt cttattttct tcttcctcaa tagaacgttt gaacaaggca tctgcgtact
     2101 catcctcttg ttccttttga gtctgttcaa ctcgcttctt ttcactttta tatactaatt
     2161 gaccaaaata caaattccca tcgtctgcaa attttaatgt aacaacatcg ccttcttcga
     2221 gtttcttatt caattttaca acataatctc cactgccgtc cgcacgttcc ccacttgtat
     2281 accactcttt agtttggcaa ttctctgtag tataactcgg acacttgagt tcatgcttta
     2341 caggctcgac cttcaatcgt tctccattta tatatgtagc aacataacca aatgaaccaa
     2401 catggacatg gatagagtct gaaccagttc taaaaggagc tacttctacc cccggaacat
     2461 tctgttgacc tactggtaca aacatcgaag tctccgcctt tacacttgat aacgatagta
     2521 aaccgatgac aaaggtaact aaaataaacg atacttttct caatttcatt ttgcttttct
     2581 cctagtagta caatatatta accggaatta gtatatacca atttcataga gaaagcaaga
     2641 aaaaacgctc cttaagtaaa aactaaactc aaaaactcaa ttcttatcca acaccttgaa
     2701 aggaatgtgg gaataatctc tgtgcgtttt taaaaattcc aaggcttctt tttttacctg
     2761 tacgagattg acaccttggg cattagcccc atagacacag ccacaatagc actggcgata
     2821 aatgtcatac tcttcacaca tttgaactga acgctgatag cctccatttt tcttaaagtc
     2881 actcggaaga tactgggtac cgtataattt ctgcacctca atcccagcag cattgatggt
     2941 ctgcgaattc ttatgtggac tgattgtcaa agccgaacca aaatagtcaa agccaagctc
     3001 aactgccttc tccgcagtct tatccaaccg ataatcatag caaaccttac accgatctcc
     3061 tccctctggc tcattggcaa gatgctgagt tttcttgaaa aattcctgag ggctatagtc
     3121 agcttctaga tagcctaccg actgtccagt tttctgatta aattctttga caaactgggc
     3181 cgtcacggct gcccgccgct ggtattccgc ctttggatga atattggaat tcgcaaaata
     3241 gatggttaca tctgcatatt gagtcaagta ctccaatgta taggtcgagc atggggcaca
     3301 acagacatgc atgagaattt tcggtcgaag cccagcttcc tgccacgtgc ttgccatttt
     3361 ttgaaacact ttatcatagt taaccttttg attcggtgat agagtcgata aaatctcttc
     3421 aactttaatc atacaaacct ccaaatatac attcattata ctatatttga agaccactgc
     3481 atagatagca ataacatgag agaacactcc ctatttccac ctaaaaaggt cccccagacc
     3541 ttgatataaa gaaaaacgcc tcccggcgtt tcctatttcc aacctaaaat aaggcgtcag
     3601 ggttggggga caaagaaaaa gcctctaaag actttttctt ttcctatctc caacttaaaa
     3661 cgtggggtaa cccacgtttt aaccacccag atatgctttt ttgacttctt ctgaggcgag
     3721 gagttctttt cctgttcctg agaggacgac ttttcctgtt tctaggacgt agccacggtc
     3781 tgcgatagca agggctttgt tggcattttg ctcaatcaag aggacagttg ttccttgttt
     3841 ttgaatatct tggatgatat caaaaatttc ttggataaag atcggagcca agcccattga
     3901 tggttcatca aggagcaaga gctttggttg gctcattagg gcacgtccca tggccaacat
     3961 ctgttgctcc ccacctgaaa gggtagctgc atcctggttt ttacgttctt ccaaacgtgg
     4021 aaaacgagca aagatttttt tcaagtttgc ttggttttct tcacgattgt tgcgaaggaa
     4081 ggcacccatt tccaagtttt ccataacagt caagcctgca aagacatgtc gaccttctgg
     4141 aacttgcgac aaaccgtccg caacgatttt acgagcagga actttttgaa tctcatttcc
     4201 aaggaaagaa atcgttccag ctgatggacg aacaagtcct gaaatagtac gaaggataga
     4261 ggttttacca gcaccattag cgccgataag tgttacaact tcaccttcat taacctcaaa
     4321 gctaacatct ttaacagctt cgataacacc gtagttaacg gaaagatttt ttacttctaa
     4381 cattgccatt aagcttcacc tccaaggtag gcttcaatta cacgcttgtt attacgaatt
     4441 tcttctggtg taccatgggc aatcaaacga ccgtactcca atacgtatat ccgctccgtt
     4501 acttccataa ccaagctcat atcgtgttca atcaagatga tagtaatgcc aaattcttct
     4561 ttgattttac ggataagttg ggtcaattct gccgtttctt gtgggttcat accagccgct
     4621 ggctcatcca agaaaagaat ttttggttca gtcgcaaggg cacgaacgat ttccaaacga
     4681 cgttgttgac cgtaaggaag gttcttagct aatgtatctg catctccatc caaatcgaag
     4741 attttcaaaa gttcaatcgc ttttgttttc aacgcttctt cattcttata gaatgctgga
     4801 agacggaaga aacttgcaaa tacttctgat ttaccatggt tgccaagacc aatcaaaaca
     4861 ttttccaaaa cggtcatatt tttgaacaaa cgaatgttct ggaaagtacg accaagacca
     4921 agcgaagcaa tttttgatgg tgctttaccg ttcaaaatag tccctgcaag agaaattgtc
     4981 ccctcgcttg gctcataaac acctgttaag aggttgaaaa gagtcgtttt accagcaccg
     5041 tttggaccga taagaccaac caattcccct tcatgaagtt ccatggtcac gtcaccaacg
     5101 gcagtcaggc caccgaagtt cttggttaaa tcttttactt caagtaatgc cattacttaa
     5161 cctccttctt cttgagtaga gccgctacac tgaattcctt agttcccaaa agacctccag
     5221 gacggaaaat cattaagaga ataagagcta atgaatagat aatcattgaa atatcagagt
     5281 aactcttgag gaatacgttc aaaataccaa gtacaatggc tgctacaaag gtacctgtga
     5341 tagagcccaa accacccaat acaatgataa tcaaaacgtt aacggaggtc ataaaggcaa
     5401 agtctttcgg aacaattgtc ccaacatatc ctgcatggag accacctgca attgctgccg
     5461 tcatagcacc aaatacaaag gctgaaactt taacaaatgt tggattgaca cctacagatt
     5521 ctgccgcaat ttcatcctca cgaacagaaa ttgtagcacg tcccatcgga ctgcgcaaaa
     5581 agttaactgt caccaaggta gtgatgatta caaaaatgta aactaaaggc cagcttgtaa
     5641 agagtggaat agacataata cctgctgcac cattcgttac actaccacca ttgataatta
     5701 aaatacgaat aatctctgca acaccgagag tcgcaattgc aaggtagtca cctttcaaac
     5761 gaagggttgg aataccgact aaaagagcta ctgcacctga gattaacatc ccaacaatca
     5821 aggcgatagc aaatccacca taagttggca tcattttccc aaggatacct actgcataag
     5881 caccaatagc cataaaacca gcatgaccaa gtgaaaattg acctgagaaa ccaacaatca
     5941 agtttaaacc aactgccaag ataatttgaa taccgatttg ctgaacaatc tggatgtagt
     6001 aaaaattcag aatccctgct gatacaagac cttgaataag tccaaaacca gccaataaga
     6061 tagccaacca aatcgcatta acttttaaat tttgcttcat ggttacacct tctctttcac
     6121 atttttacca agaataccac ttggacgcac caagaggatg atgatcaaaa cagtatatac
     6181 gatcgcatcg cggaaagtat cgaattcaat cacataggtg aatgtttcga tgataccgat
     6241 aacgaagcca ccaagcgcag cacctggaat aataccgata ccgcccaata ctgccgctac
     6301 aaaggctttc aaacctgggg tcatccccat caaaggctca atctggttgt agtagagacc
     6361 taggagaaca cccgcagcac ccgcaagagc cgacccaaga gcaaaagtaa agctgattgt
     6421 acggtttaca ttgatcccca taagctgagc tgcatcgcta tctacagaga ccgcacgcat
     6481 ggctttcccc atttttgtac gtttgacaat taattgaagt gcaaccatca acgcaagcga
     6541 tacaccaaga ataatcaact ggatattcgt aacagaaact ggaccaaggt taaaagtcac
     6601 agcttcgatt gcttgtggaa aggcttttac gtctgctgta aagaatttaa tcatagtgta
     6661 ttctaagaag aaggatacac cgatagccgt aatcaaagct gctatacgcg ttgaattacg
     6721 caaaggacga taggctaaaa actctataac tacaccgaga atagccgtcc ctaccatcgc
     6781 tagaatgaga gcaacaaaga aacgcgttcc accatctgca ataaaattta aattatttaa
     6841 taggaagtac cccataaaag cacccatcat atacaaatca ccatgggcga agttaatgag
     6901 tttgataatt ccgtacacca tggtataacc aagggccaaa agggcataaa cagaaccaag
     6961 aatcaaacca ttgacaagtt gttgaagcat aggttcacca atctttctaa atatttttcg
     7021 agctcaatag cattgttaca ttatacaaaa ttttctgaaa ataagcaagt tagacagaga
     7081 gtttaatcat taaaattaca gaaaatttaa ccaacccaaa ttttatatcc gcatgtatac
     7141 tattctatac attctgacaa gtgaaaaaga gggaattccc tcttttcatc cactattagt
     7201 caatagagat agtatctaca gatgattctt ctccgtttgt taaactaaca acataaactg
     7261 atttaatgac attgtgctct ttgtcaacag acattgtacc agtcacacct ttaaagtctt
     7321 tcagagctgc aagattagcc ttcactgctg ctgaatcagc tgcacctttt gctgcttctg
     7381 ctgccatgta aaccgagtcg taagctaaag ctgagaacat tgatggctct tcattgtatt
     7441 ctttcacata ggcatcatag aatgcttttg ctttttcgct tgctgatgtt acaaatccag
     7501 aaaggtagta aacatttgat gctgctgatg cagttgccaa ttcagtaaat tgtggtgagt
     7561 caaaaccatc tgaaccaaga attggcttgt caatacccaa accgcgtgct tgcttcacaa
     7621 ttgtacctgt ttcattgtag taaccaggca tgatgattgc atcaaattcc ttatctttca
     7681 attttgtcaa agcagcttgg aaatctttat cgccagaagc aaatgtgatt tctgaaacga
     7741 tttctcctgt gtatgctttc ttgaacgcct ctgctacacc cttaccataa tcagaagagt
     7801 tgtcaaagta aagaacaact ttcttagctg acaggttctc agtagcgtat ttagccataa
     7861 tttgaccttg atacccatct gtaaaggttg tacggaagaa gtattcttgg acctcacctt
     7921 tatcgttcac aaccaagttt gtttgagttc ctgaaggagt aatcatagga acaccagcag
     7981 atgtcaatgc tggaatagag gctgctgaag ctcctgatgt agcaggacca atcacaacgt
     8041 ttgccccttc acttgccaag cttgttgcaa cagtagctgc ctctgctgtt tcagacttgt
     8101 tgtcttttgt gatcacttcg atttttttgc cgtcaatacc acccgcagca ttgatttctt
     8161 tcacggcaag gttggcacct ttttcctctg tttgaccata agatgaaaca gcacctgaca
     8221 actccaagtt gtagccaatt ttaaacgtat cacctacaga agaacctgcg gctgaagtat
     8281 tggttgtcga aacattacca catgcagcga gtagagctgc agaggcaaat gtagcaagcg
     8341 ctactgcaaa ttttcttgtt ttcatgaaaa ctccttaaat ctttcttaaa ttttacgatg
     8401 tatctaatat actgaattat ctgaaaattg tcaacaaaaa agaaaaaaat tttaaaataa
     8461 aaaattagca gggaatacat acctgctaat tccgactatc ctacgactga tggttcttca
     8521 tctctccata gattacctac aaagttttgg tctaattcct taatgtatga aggaaccact
     8581 ttttttacaa aacgttcctt tttcaatttt aatatggtag cttctactag ttcttgatcc
     8641 atatacacca aaacatatcg caagcgtttg gaatggtaaa caatatctcc atattggctg
     8701 agtttacgtg catcacgatt gtagtgtaaa tagacagtta agcaagtgcg atttttcttc
     8761 tcaaacatgt cttctcctct aaaaattctc tttctatatt ataccgtttt caatgataaa
     8821 tgaaaagctc caactacctg taaaagagtt ggagctaata ggaatagtca gtactattac
     8881 atatttgtca ctgcttattt gacttttgta ttgtccataa tctggtcaat aaatccataa
     8941 gccaaggttt cttcagctga catccagtaa tcacgttctg catccttgtg gatttgcttg
     9001 actgtcttac ctgagttgtc tgccaagatt ttttctagct tattacgtgt ttttaatagg
     9061 tgttctgcag caatagccat atctgtttgc tgagtaccac caccagttcc acccattggc
     9121 tggtgaatca tgtactctgc atttggcaac atgaaacgtt tgcccttggc accgcttgat
     9181 gcaatgatgg ttcccatgct cgcagctgtt cccataacga tggtttgaac atcagcttta
     9241 atgaaattca tcgtgtctac aatggcaaga cctgctgaca ccgatcctcc tggcgtatta
     9301 acatagaggt aaatatcctt tgtagggtct tgggcatcaa ggaaaagcaa ttgtgcaatg
     9361 atagagtttg ccatgttgtc ctcaactggt cctgtcaaca tgataatgcg gtctttcaaa
     9421 aggcgtgagt aaatatcata agaacgctca ccacggctag tttgttcaat aactactgga
     9481 atcataaaat tactcctttt cgaggttttc tgtacccatt atatatgaat agtcaaaatt
     9541 ggtcaaataa aaaacacgat ttcaggaaat gaaaaagaaa ccagcagagc tgatttctta
     9601 attattttgt accgaacaag cggtcacctg catctcccaa acctggtacg atgtagcctt
     9661 tttcattgag tttttcatcc aaggctgccg tatagatatc aatatctgga tgtgcttctt
     9721 gaagagcttt tacaccttct ggagctgaaa caagagcaac aaatttgata tttgaagcac
     9781 cacgtttttt caatgaatcc actgcaagga tggctgaacc acctgtagca agcattgggt
     9841 caactacaaa aatatgacgt tgatcaatat cttctggtaa tttcacaaga tactcaactg
     9901 gttgaagggt ttcttcatcg cggtacatac cgatgtgacc aactttagcg gctggtacca
     9961 agcttagcaa accatcaacc ataccaacac ctgcacgaag aattggtacg atagctaatt
    10021 ttttacctgc aatttgtttc tgaactgttt tagtgattgg cgtttcaatc tccacatctt
    10081 caagtggcaa gtcacgcaaa acttcgtaac ccatcagcat cgcgatttca ttaaccaact
    10141 cacgaaaatc ctttgttgaa gtagatgtac gacgaaggat agacaactta tgctgaatga
    10201 gtgggtgtga aatgacttgg aatttcccca tgatgataaa acctctcttt tttgtttttt
    10261 ctattttacc aaaaaaattg aaaaaatgct tgagaatatg gcaaatttat ttattttttg
    10321 aaaacgatag cttcaaaagg tctcaacatc cctttattaa tcgcctcttc gttttcataa
    10381 ttgttcatga aaatagaata ttcttccaca gctatagtat aagcctgctc ctggcttgaa
    10441 aagtttacta atatgatgaa atcatcctgt tcatcatatt tacggtaggc cattaccgag
    10501 ctatttccag tctccatcac ttcatatttt ccttcagaca tacaaggata ctctttccga
    10561 agagcaatta atttttgata ggtatagaaa agcgattgtt tgtctgcaag tgctttttca
    10621 acgttaatgt ctttgacagt atctcccaaa gccagccagg cttgacctgt actgaaacct
    10681 gcaccttctt ctgctgtcca ttgcattgga cggcgagcat tatcacgacc tttggcattt
    10741 atagaagtaa tcaattcctc cttggtgaag ccattttcaa tccgttccgc atacatgcga
    10801 cgtgtttcaa tatcatccgc ttggctaata tccgtaatcg gtgcattaat cataccaatt
    10861 tcctcacctt ggtagatata aggtgtccct gacataaaat gaagataaat agctaacatt
    10921 ttaccactta gttcacgaaa tgcaggtcga tcatcaccga agcgagaaat ggcacgaggt
    10981 aaatcgtggt tattccagaa aagcgagttc cagcctttac caaccagttc agtctgccat
    11041 ttggatagaa cgttatgcaa acgtgctgga tcaagcggtg ccaaatccca cttttctttc
    11101 ccttcctgct gatcaagtcc tacatgttca aattggaaaa tcatcgaaaa ttcttttcga
    11161 tcaggatgag aatacaactg agaattttct ggattggcac tccaggtttc cccaacagtc
    11221 actaagtcgt aagcaccaaa ggttttctcg tttaattcct gaataagagg atgaagagtg
    11281 ggaccatcgg ctgtaattaa tttttccggt tcttttccaa tcaaatcaat cacatctagc
    11341 ctgaaaccgc cgacaccttt ttcaatccaa aaattgatca tgtcccagat ttcttgtttc
    11401 agagcaggat ttttccagtt cagatctggt tgcttaacag agaattggtg gaggtagtat
    11461 ttgttcagat gtggaacgta ttcccaagca gaacctgaga aggtcgagcg taattcattc
    11521 ggctcatcag cccaaacata ataatcataa tagggattat ctggtccttt gagggcttct
    11581 tgaaaccaga aatgttcatc cgaggtatga ttgagcacca aatccatgat tattttgata
    11641 ttgcgcttat ggccttctgc aatcagctct tccatatctt ccatggtccc aaattctgga
    11701 gcaattcctt ggtagtcact gatgtcgtaa ccattgtcat ccatggggga ctgataaaca
    11761 ggactgagcc aaatagcatc aattccaagc tcatggagat aatctaatcg gctgataatc
    11821 cctcgaatat ccccgactcc atctccattt gaatcttgaa aactacgagg ataaatttgg
    11881 taaatgacgg acttcttcca ccaatctgtt ttttgtattt ctggcatttg attgatcctt
    11941 tctgtacaat cttattaatg taagaaaaag aggtgtcccc ctctttctat ataatcatat
    12001 tataactcaa ttgtggtaat ttttccctct tcaatttcaa caatttcaaa ggatttttct
    12061 tttaggtttg ctgttaggcg ggcagatacc cctgcatctt gattattcca gaaaatttcc
    12121 atacttgttt catccaacat cttaacagag aactccccgt cgaaagctgg acttgtattg
    12181 cggaatttaa ggagtttgaa caaggattgt acaactggcc gttgcacttc ctgctcaatt
    12241 tcttccaaat catagtaatg gcgattgata ttgcgccctt ccttacttga ttctaaaagt
    12301 tcaatatcat tttcgcctgc tagtaaacca acataataaa tctgtggaat acctggtgca
    12361 aagcattgga gaacacgcgc caatagataa gcttgatcat tattgccaag agcagaataa
    12421 taagtacagt taatctgata aatatccaaa ttattatagg cttctgtact ataaattttc
    12481 ttcacattgg caccttgtgc atacaaggct tcacgtgtct cctctgtctc ttcatccgtc
    12541 agcaaatcct taacatccac aacaccgatt ccatcatgtg tatcaagagt tgtaaattgc
    12601 ttgcgagggc aaatctccat ccagtgcacc aggcgattga catgaccaga atacaaagcg
    12661 tggagaacca gcattggcaa ggcaaaatca taaacataat aatcttgctc ggcaattttc
    12721 tgctgaatgg tatagtgttc atgaatttct ggtaagattt ctacatcttt tggtgccaat
    12781 aactgacgtg gaaaatggag catttcccaa atatcaggtt ccacaaagaa acaattggtt
    12841 cctatttttt tattggcata agcaaaggcg tccaaacgaa tgatcgaagc accatgttct
    12901 gccaactgtt ccagattttc ttggatgaac tggcgtgttg tctctgtagt cacatccaag
    12961 tcaatctgct gttcatcaaa ggtacaccat accttctctt cgctaccatc agcaaatgtt
    13021 gcaattcgat atggagcacg aggtttacgc ttatagatca aatcaacatc ttcttgcgtt
    13081 ggctcaccat ttggccaaaa gtttttataa cgaataaaca aatccgcata agctgattgg
    13141 tctttctttt caagaaaatc aaggaaataa ggagattttg ctgatatatg attgatcata
    13201 aaatcgaaca tcagatagta gtccttactc aatgcttcaa tatctgacca gtctccaaat
    13261 gcaggatcta cctttgtata atccattggc gcaaacccac ggtcacctga tgatgggaag
    13321 aatggtagaa tgtgaatacc tcccacaaca tcctttaatg gtccctcaag aacttttttc
    13381 aaatccttga gattcttgcc taaactatca gaataggtaa tcaacatagc ttggttttta
    13441 attttcatag acattcacct ttgtaagcct tttctttttt attttttaga aaaggttgaa
    13501 caagtcaacc tttgtaatta tttgacagaa ccacttgtca tacctgaaat aatatgtttc
    13561 tggaagacaa ggtataccaa taatattggg ataatcccca caacatagga ggcaaatgat
    13621 ggtccataat cactgaaata catgccttga taattgtatt ggaaaagagg taaagtccac
    13681 atgctttgat cacggttcaa tactagtaaa ggtaagagaa aatcgttcca gacccagagg
    13741 gcattgataa tcaaaaccgt agcgtgcatg ggtttcatga gtgggaaaat aattttccag
    13801 tacatagtaa atttatcaca gccatcaata gctgcagcct catccatttc ttcaggaaca
    13861 atggtcttaa tatagccgac atagaggaag agggcctgag gaactgcata ggtcaaatat
    13921 agaataatca aaccgacaat attgttcaaa ccaaggcttg acattaattt ggtcattggg
    13981 agcataatca cttggaaagg tacaaaaatc ccaataatca agaaaaagta gataaagtta
    14041 aacactgtct ggcgtttcat ttgacgggct acggcgaaag ctgccattgg aataacaagt
    14101 agaatcaagc caactgctac aatcgtaatc aaggctgaat tgccaaaata ttgtacaatc
    14161 ccatcattaa acaagcgttc gtagttattt aaggtgaaat tttcaggaag accaaagaag
    14221 ttgctcgtga tttcctttgt tggtttgaac gagctaataa tcgttacaag tagcggtata
    14281 aacatgaaga gaataccgct gaagagcacg agatagaccc accaattttt ctgtttttga
    14341 gtattcatgt ccgtcctcct aaatttcaaa tttcttcgaa attctcatct gaatcaatga
    14401 gatgacaata atgaagatga agagtactac agccaaagca ttggcataag agaatttatt
    14461 gtctacaaag gcatagttat agactaataa accaagtgat tctgttttgc cgtctgggcc
    14521 accacttgtc agtgcaaaga taaggtcaaa tgctgtcaaa cctgacttca ttgccaagat
    14581 gaaaaccata ctgatagatg gtaataagaa tggaagttca atattgaaga attgttgaga
    14641 gcgtgttgca ccatcgattg cagctgcttc tttcacatct tctggaatac tttgtaaccc
    14701 agacaagaag atgatgactg gcatcgccaa tccctgccag agagccacaa aaagtacagc
    14761 tggaataaca gtattttctt gtaccaataa gttttccatc aaccaatcaa tatgtagtaa
    14821 ttctccaatt tgtgtgaaac catagttgaa caattggaca aaaatcaagc ctaaagtaac
    14881 ggttgaaaga actgctggga agaaatacca ggttctaaag aaaccaacag ctttaatctt
    14941 acgattaagg agactagcca accaaatccc tataacaatt tctccgatga ccaaaccaat
    15001 ggtgaagata atggtaaaag tcatggacgt ataaaaatca ggattcttca agatatctag
    15061 atagttttga ataccaatca agctgaaatc tgatgtcaat ccattccaat ccgtcagact
    15121 ataatagatt cccgttaata agggatagaa gaaaaagatt aactgtagac caattggtat
    15181 ggcaacaaat agatagggcc aatatttggc aataaaacct ttttgattca tcatgatact
    15241 ccttttagcg tttgttatag ttgttgcaac tcagctccat ctgaatttag ggggcttcga
    15301 gataaagctg aattggaaca actataaggg taagaagaga aatccccact tacatcattt
    15361 atagttgtta tgtattactt acttcattgg gtcaaagaaa gcattcaatt cgttcgcaag
    15421 cttatctgcc tttggatctt tgattgtttc tacagcgatg gtccagaaat cattttgcga
    15481 tgtccattct ttatgcaacc atgcaatttg cttatcagta aaggcatatt gggcaactcc
    15541 ttcaatttct gggaacttcc cttctgtttc aactccctcg acagaagttg gcgaaccgtc
    15601 tacatcataa tatttttgca tgacttcttt gctagacata taagcgagga actttttagc
    15661 ttcttctggg tgttccgtct tggcactgat tgacaaagct aagtcggcac caccgatagt
    15721 cacatcatcc ccttcttttt ctccagggaa ggcaaagata ccgtaatcca aatcagcatt
    15781 ctgctgattg atgactgcag cagcccagct accttgtggc atcatgagag ctttgccatc
    15841 tgcaaatgct gcgacagcat cggcatactt agctccagaa aatcctgatt gaccgttgtc
    15901 atgtaataat tcgaaggatt taacaactgc ttgcgttgct ggattgtcag ctgtaatact
    15961 acctttgcca ctccgaacta ggatatcttg agcttggtca taacctcctg ccgcgctcac
    16021 ccatgccaac tgatggaatc catttagtga ccaagaatca gccaaagaca gtgcaaatgg
    16081 tgtttcaccc ttgtctttaa tcgtcgctac taatttttcg aattcagcag ttgtttttgg
    16141 cacttctagg cctaattctt taaatttagc cttgttataa tagatgccat agacattggt
    16201 gttcaatggg agagaataaa ttttattgtc aatagcatag aattctgctg ctccctcttt
    16261 caaattgcca actccagcat cctctccgag ttctagaaaa cgaccatctt ttgcccaagc
    16321 atcaaaatct gccgcaaccg gatagacatt gataatatct ggatcttcat tgttggccat
    16381 acgagttttc aagatggttt ctgcatctgg cacactggaa aatttaatac taatgtcagg
    16441 attggccttt tcaaaatcag taatgatttc ttgcaaggtc gcttgcattt ctggtttttg
    16501 cgagaaatat tctaattcga ctttatcgct agaccccgcc gagccattcc cacatgctgc
    16561 tagcaaacta gcaaaagcaa tcacagatgc acttttaacg aatgttgtaa atttcatttt
    16621 ctttctccct ctttataact aggtcattta gtaataatat catatttttc aactgctaat
    16681 gtaactaatc cttgactctg gaaacgaatg ccatctgctt caagtggtgt ttcaagtggt
    16741 gtttcaattt ccatactgaa cacttgcttc cctccattga tagacaattc aatggaatga
    16801 ctatccaaaa taaagcgaca ggtgattgaa tcttggaggt ctactgctac ttttctgaaa
    16861 caattctgat ctaatctaag cccagaatag gttcgatcaa cttctttgga tcacgaaaat
    16921 gttctctact aaaaccgtca ggcagtagat ttcctgtcaa tactggattc gtattaactt
    16981 ttttataatc aactccatct ccaacggcta aacattggtc ttgaacaact tcaatctgcc
    17041 cactactgtt ttcttgtttt cgaacccctg tataaattag atagtgttta ccctcgtgct
    17101 ccactgcact tcctgaaaag catccttcct ggtcatacca ttggtcgggt gctagagcca
    17161 cggacaaatc tttccaaact accatatctt ccgtcacttg gtgtccccag tgcatgggcc
    17221 cccacttgat atcataagga tgatactgat aaaatagatg gactttaccc tgaaattctg
    17281 aaagtccatt cgaatcattt agccaaccaa caggtgggct aacatgaaat catggccttg
    17341 tatccgaagc aacatgatgc tgggaaacat aatctctagc ctttttcaag ttttgtatcc
    17401 ttcacctccg gatgttattt gtaatgtaac cggttactta atcgtattct acccttttag
    17461 tttttgattg tcaagcgttt tcaaaaatat ttttctaaat tgaaaaaaga ttgacacata
    17521 gcgattttca ctatataata ctgaaaacaa gaaagggttt tcaaatgaag caacaaaagg
    17581 ttacatttgc ggatattgca aaacatacaa atttttcaaa gacaaccata tcacgatatt
    17641 ttaataatcc cgattcatta acagatgcca gcaaacaaaa gattgaaaga gcattaattg
    17701 aactgggtta ccaagaaaat aaacttgcaa aagtattagc caaaggtaaa acggagttca
    17761 tcggtattat cataccaaat ctatttctcc acttttatgc ggccatttta gaagaaatat
    17821 tagctaccta taaaaaaaat aattacaaat tcttagtttt catcggtgat gacaatattg
    17881 agaccgaacg agagtatatc caagaattat tggcttataa tatcgaagga ttgattgttt
    17941 taagtcatac cattacttct gaagaattag ccagttacaa tgttcctgta gtttcaattg
    18001 agcgcgaatc acaatatatt tctagcattg aaaccgacaa ctatctcgga gccattcaag
    18061 ctacaggttc tttaatcaag aataactgtg atatacttat ccatattaat ggaaaattga
    18121 aagaaaatat acctgcctat aatcgagtca aaggtttcga aacaatgtgt caggacagtg
    18181 atgtagagta cagaatcttt gcaacggacc taggtagttc ttaccatcag attcaaactg
    18241 aattacaaca ccattttgag acgattgagg ctaactatca aggtaagcgc aaaggaattt
    18301 tcttcgctaa cgatacctat gcctctatct ttgtcaatat cctattccaa aaatatggtc
    18361 atttccctga ggattatcgt attgtaggat ttgatgattc tccgattgca tcggaaacaa
    18421 ttattccatt gacaactatc agacaagatt taaaggctat ttctcacaca gctttagaag
    18481 ttttgagcca gcaaatagaa gaacgaaaga aagaaattat ttcgcctatc caacatcgcg
    18541 agattgctcc gaaattgatt aagcgctcca caacatttta aaataatggt tgcctagtag
    18601 aacgaaaata tcgttactag gtaacctttt ttattgttca ttacttcatt gggtcaaaga
    18661 atgcgttcag ttttttcact aattctgctg agtttggatt tttaaccatt tcaacagtaa
    18721 tgttccagaa ctcatcttct gattcccatt cagattgcaa ccaaactacg tgtttatcag
    18781 taaaggcata ttgtgtaact ccagcagttt cttcaaactt accttctgta tctacacctt
    18841 caactgaagt tggtgagcca tctacatcat agtatttctg gataacttct ggacgagaga
    18901 ggtattctag gaatttttta gactcttctg ggtgctctgt atctgctgaa atagatagag
    18961 caaggtcagc tgcaccgatg gtatagtcgc caccttcttt atcgccaggg aatgtaaaca
    19021 taccatattc aaattctggt tcttgttggt ttacagctgt agctgcccat gtaccttgtg
    19081 gaagcatgag agcatcaccc gctgcaaagg ctgccaccgc atctgcatag agcgcgcctg
    19141 ttgccccttt ttgtccattg tctttcaaca attgcaagcg ttctaaaact gcttttgttg
    19201 tcgcatcatc ttgaattgcg cctttggcac tacgaatcag aatatcttct gcaccatcaa
    19261 atccacccgc aacagttacc caagctaact gatggtagcc gttcaatgac caagcatcgt
    19321 tcaatgaaag agcaaacggt gctgcactgc catcagactt gattttgtct accaaagcca
    19381 caaattctgc ataggtagtt ggaacttcga gccccaattc tttgaactta tccttattat
    19441 agtaaatacc ataggcattt gctgtcaaag gaagagtgta atttttttcg ttaacaagat
    19501 aaggcgtgac agcaccatct tttagatgac tgagacctgc atcatcacca atttctagga
    19561 aacgaccatc cgctgcgtat gctttgaagt ccgcattttg tggataaatg ttgatgacat
    19621 ctggcgcttc gttgttggcc atacgggttt tcagaacagt tcctgcatct ggtacatttg
    19681 aaaatttaac atcaatcgta ggattttcct tttcgaaatc attaataatt tcctgaagag
    19741 tagcctgcat ttcaggtttt tgtgagaaat attctatttc taccttatcg ctactacttg
    19801 cattcccaca agcaaccaag aagctggcaa aagcacaaac tgacgcacat tttaaaaatg
    19861 ttttcatttt cattataaaa tcctcctaga ttttgttaaa aatatattgt acactaaaat
    19921 aatctttttg aacatgtggc attgtaagac caatgttcag cagttcatcc ccgtagaatg
    19981 tttctcccaa ttgagggcat tcatacaagg catccgggtc tagccccttc aaccgaacat
    20041 gaagcaaagg cgcttctggc ttagcaagaa tttttacaaa tgtaaagacc gcttgattct
    20101 tatcttgact aacataattg gcagcccagg tattgctcgt ctttttcaga cggtagagct
    20161 gaccgaattg gatagtttca cgaatggagt gataggtttc gatctgctga ctgatttcat
    20221 ccaattcctt ttccgaaagt ttcgttaaat ccagctcgta accaaacgct cctcccatca
    20281 tagctacatt acctcgtgta gcaaggggcg taatacgacc aacttgatga tttggtacag
    20341 ctgacacatg tgctccgata gaagaagtag gataaatcaa actggtacct tcttgaatag
    20401 ataagcgctc aatcgcatct gtatcatcac ttgcccaagc ttgtggcatg taatacatga
    20461 ttcccaaatc attacgacct ccaccgcctg cacaggattc gaaaagaata tctgggaacc
    20521 gctttgtaag gtggtctaat acacggtaga gacctagcat gtaacgatgg tggaactcaa
    20581 agcgctggtc atttgctaaa ccttcaggga tattggtgat attacggttc atatcccatt
    20641 ttacataaga aatattggct gattctaata tggaagagac gctatcaatg atgtagtcac
    20701 agacttcctg cttggtcaaa tccaaaacta attgttctcg gctgtagatt ggtaagcgtc
    20761 cttctgtccg aattgcccaa tcaggatgct cacgataaag atcgctatca atagaaatca
    20821 tctctggttc aaaccacaat ccgaatttca taccaagctc atttattcgg tctgctaaac
    20881 cattcaaacc atttggcaac ttatccaaat tgactttcca atcgcccaat gaactttcat
    20941 cattgtttcg tttaccaaac caaccatcat ccagaacaaa caattcaata ccagctcgac
    21001 ttgcaacctg agctaactgt aaaatctttt cttctgtaaa ttcaaaatag gttgcttccc
    21061 agttgttgat taaaatgggc cttggtttgt ttacaaacga tgatcgaatg aggtgttttg
    21121 tgataaagtg atgactattt tgtgtcatac cagtaaatcc tttatcagtg tatgataaga
    21181 gaacttctgg agtttgaaac cggtcatcct tatccaattg ccatgagaaa tagtgacttt
    21241 ccaatcctag tcccaaacga ctggtttcca tggctgtcgt ttcgacaaat gctgtaaagt
    21301 tgccgctata gacaaggtgg gctgcataaa catcgccctt gtcctcactt gcatcgggtg
    21361 aggctagtgc taagaagggt gttcttgagt gacttgaagc acctcgaatg ctaccaatcg
    21421 aatactgacc ttttgtcaat ggggtctgtg tccactcttt ttcataagca taacgtcctg
    21481 ccaagctgtg aacaatgaaa tcttgatgtg gaaaatcaag cgttgcagac aagaccttct
    21541 ctagtttgca tggatatttg ccagtttgaa ttgtagctga ccgtgcgaga taggaagctt
    21601 cttcaaaaac agaatactga agtgttacgg taatatctgt caactgatcg taaagatcaa
    21661 tttcaagact ctctacctct tcttgatttc caaaacttgc tggtaatccc ctcagttctt
    21721 ttttcccctt gtataatcga tactctttgt attttaggtc aagagtgact ccaaattcgt
    21781 tccgaacatc taatgctgag gttctaaaat ctcccagacc attgctggaa tattcgagtg
    21841 ggaggacatc caatgagtat gtcctatccc cagtaattgg actcggagaa aacgatcgat
    21901 ctaaatatgt tattttgttt ccatcgctaa atttttcgat ttttttccca aaataacgat
    21961 gaaccagatc gcctgtttcc aacacttgga tgatataaga gaattctctt gttttcaggt
    22021 gaaaaatctg tttttcatta taaatctcaa tcacattcat ctctcccatc tcttctttat
    22081 gctattattt tacaaaatga aaacgcttta cttaatagtc ttttgtattt aaaacatgtt
    22141 ataatgtttc ctaggaggat tgaaatgaat attctaaata tctataatga attggatagt
    22201 cataattttg acctaaatgt agaccattac ggtgccgaac aatgtgacaa gggctattcc
    22261 ttcggtccta ctatccgtga taattttgtc ctgcatttta ttacaaaagg aagaggaaaa
    22321 attcttgttg acggaaaaac aagctatctt gctgccggcg atttgtttat tcttccaaag
    22381 gatgtttcca ttttctatca agctgatgat atagacccgt ggacctatat atgggttggt
    22441 tttagtggtt cacgagcaaa agacctactt aatcaaagtc aactgctaga aaactactac
    22501 ctccactcca atctagagtc accaattcta ggctacatgc atcagattaa ccatgttcag
    22561 atgcatccca tcccctctat cacagaattg gtcttaattg gctacctcaa ccaactctta
    22621 gcagcactca tcgaggaatt tcccagtgaa acattaatta agcctgaaac acaaaccaag
    22681 cactatgttc agcacgccat caagatgatt cataaccact atgcccatcc aattaaagtt
    22741 tctgaaatag cagattttct agctttaagc cgaagctatc tctataaaat ttttaagcag
    22801 gaaactggct attctatcaa agattatatt ttacaagtaa aaatgaatcg ttcttgtcaa
    22861 ctattagaag atgcttctcg gagtatcact gaaatcgcct attctgtcgg ataccaagac
    22921 cctctcacct tcagcgcggc cttcaaaaat tatttccata tgagcccgac agaatttaga
    22981 aaaacacaaa aaaataagga ttaggtgatt ttactcacac ctagtcctta tttctttatc
    23041 caaaaacctt accaagtcgc tgacaggctt cttcaatgac atcaaatgga gctgccgcat
    23101 ttagacgtgc atggtgctta ccttccttac caaaggtcaa accatcattc aaaatcaact
    23161 tcgctttaca atgaagaata tcaaagagtt ccgcatgctc taactcataa gcagaaaaat
    23221 caagccagat gaggtaggtt ccctggggct tcatgacctt gatccttgta tgggttgcca
    23281 aatactcctc aacaaagtct atatttctct ccaaaataac cttcaactcc ttcaaccact
    23341 catctccata agtgaaagca gcttctgtgg ttaacaagcc aatcgttgga atctcgtgct
    23401 gattatttat caattgacgc ttagcgaaag tcttgcgaat gcttggattt tcaatgattg
    23461 caaagctatt ttttgtacca gcgatattga aggtcttggt cgcagatgat aagatgattg
    23521 aaaactcttt aaaactttca tccactgtgt taaaggaata atgcttgtga ccatacaaga
    23581 tcaaatcttg atgtatttca tctgagataa ggataacact atgtttctga caaagacgtc
    23641 caatggccaa cacttcctct cttgtccaaa ctctaccacc tgggttgtgg ggattacaga
    23701 aaatatagag tttcacttga ttctctacaa tgtccttttc aagctggtta agattaagcc
    23761 taaaaatacc atccacatct acaagtgaat tggcgactag ctgacgattg tttaatttga
    23821 cagtccgcgc aaagggtgga tagacaggcg tattaattag gactgcatcc ccttcttctg
    23881 tcaaagattg aatagccata gataaggcag gaacaactcc ttcaatgagt aggatggact
    23941 ctctttcaat cttatagcca tgctgtctat cttcccagtc aataatagac tgatagaggc
    24001 tatcactagc ataaggataa ccaaaaacat gatgatctgc gtagtcacgg attacttggc
    24061 gaatttctgg tagaggctca aagtccatat ctgctatcca caagggtaag agttctttat
    24121 ccgtctctac ttttctccat ttttccgcat gctgggatag acgattcgga ctatctataa
    24181 aattatactg tgtcatatct tatccctcca aggctgtctt taaatctgca atcaagtctt
    24241 ccgcatcctc aataccaatt gacaaacgaa gaagatcatc tgtcaatcca taagaatggc
    24301 ggatttcagc aggaatgtct gcgtgggtct gagtggctgg ataggtaatc agactctcta
    24361 ctccacccag actttcagca aaggtaaaga ctttcagggt gttgagaata tggggaatcc
    24421 gactttcatc taccacctta accgaaatca tcccaccttt tcctgtgtag taaacttgct
    24481 tgactgctgg actcttctcc aaataggcaa caattttctg agcattttgt gtcgtccgct
    24541 ccattcgaag cgagagggtt ttgagtccac gcatgagtaa gtaagaatcc agtggagata
    24601 gggttggacc cgatgtattt tggtcataaa agagcttatc atataggtct tgatcattgg
    24661 tcatcaaagc gccagctagt acatcattat gcccagatag gtacttggtt gctgaatgta
    24721 ggacaacgtc cgctcctaga acaagtggat tttgataaat agggctgtaa aaagtgttat
    24781 cgacaatcac cttagcacct ttggcatggg cgatagccga aaccttagcg atgtcaaact
    24841 ccaccatgag tgggttagtc ggtgtctcca gataaacata gtctgtctct tcggtgatgg
    24901 ctgcaatcag ctcctcctcg gtgtttgcat aggtaaattg aaatctaccg atactctctt
    24961 gctcattgaa ccagcggaag gaaccaccgt acaaatcacg cgccgctacc acttgactcc
    25021 ctacaggaaa accattaaaa agtaagacca gagcagccat tcccgagctc gttgctaggg
    25081 catagtcggc cttttcaata gctgccaaag tcgtctctag actggcacgt gtcggatttt
    25141 ttgttctcgt gtagtcataa cctgtcgatt gaccaaactc agggtgttga taggtcgtcg
    25201 aaaggtggat aggggaaatc aaggcacctg ttctctcatc gctattgatg cccgtatgcg
    25261 ctaaaatcgt atcaatctta taatctgtca taacatctac tccaatctaa cttacaatat
    25321 agtctagcat gaaataggag atttggtgtg aaaaatatcc aaaaatactt atagaaaaat
    25381 agggagcctt gttatagttt ttctttataa caatatccat actggatcta ccaataaata
    25441 cttttaaacc tataatttat ttgatataat aaaagaaaga gaggtgatta tcatgaaatt
    25501 ccagtttaac aagcatttct atcggtatag tgccttctat tctatgattt tttggacttg
    25561 tttttttctt tcagacattt tgatagaccc ttcccaaact cctgcatggt acagcctatt
    25621 ggcctgtctg attattttta tcaatgccat tcgggtattc ttcttcaagg aagaaaagga
    25681 gctcactcgc atgggctaca tcttctatat cggattgatt gtagtgattg tttatctgag
    25741 atttattttg ggtaagtaga aaggagttta ctatgtctaa gaaattcaat aaagcatttt
    25801 atcgaacttg ggaattttat ttctccatcc tttgtatcct acaagtgatt tatgcagctg
    25861 taaacggacc gttttggttt atccatctag tcaagcttgg actcgggctt tatgctggtt
    25921 acctagcttt ctttaagtca cgtagctgga ttaaaaaaca tggcaaattt atctgacgat
    25981 tggattgatt gctagttgga taatcatttc cttctttgta ctgtgaggat tttcaatgtt
    26041 taaggaattt aataaagaat attatcggag tttgaatttt tatctgatga tcatgttgtt
    26101 tctaggaagt atcggggaat ggctaaataa gggacctagc ctctggcttg ggctcttgct
    26161 ctttgctact gtcggtactg cccgtagtgc cttttggtct aaagaatgga ccttaaaagc
    26221 aaattggcaa atctatctct gcatcgcatt cttgcttgtt ggagcttggg tagaattttt
    26281 tgtttaagag ttgggagtgg gaaagacatc catgatggct ccgccctcac ccacagaata
    26341 atgaaaacga acataaagcc ctcactaggt gtataatctt agtgagggct ttgtggttga
    26401 cgagttactg atgttagtca tcgcgggaaa aactaaccca ctctactgac gagcacccca
    26461 aaatatgcga taggcatgag tataaaaata cgactaaaat tcggtagata agctctctaa
    26521 tttttagaag gagagaatta tcatggatgt tctctatcaa tcttgtgcag gtattgatgt
    26581 ccatcaagcc aatattgtcg tctgtatcct acatggacca ctcacctcaa ctcgtccaaa
    26641 gcgtgagatg gctacatttg atacaacgac taaaggccta cgtgcttgcc acgattttct
    26701 cagtcaattt catgtggaag ctgttggtat ggaaagcaca ggtgtttatt ggcgacctgt
    26761 ctggcatgct ctatgtgatg acttcaagtt gatactcgct caaccagccc acatgaaggc
    26821 tattccaggt cagaaaaccg acaagaagga tgctcactgg attgccaaat taacacggat
    26881 tggtctattg cctcggagtt tcgtccccga tgaagctatt caagaattga gggaattgac
    26941 cagacagcga aaacattatg tggaaagtcg caatcgcgaa accaaccgta tccataaaat
    27001 tcttcagtca ggcggtatca agctaacaac ctatattgaa gatattatgg ggctatctgg
    27061 tcgcaatctc cttcagctac tggttgatgg gacgcctatt acacctcgca ttgtccatca
    27121 atctgtttat accagcttga agaagaaagt gccgcagctt ctggaagcct tggatggcta
    27181 tttttctgac catcaccgct ttatgttaaa gcagtccttg gagatttatg atttttatca
    27241 gaagcagatt gagttgttgg aagagcgaat gaatgtctat ctatcacaat atgaaaacca
    27301 tgtagaaata ttggattcca tcccaggcat tgatgtcatt acagcttctg ttatcatttc
    27361 tgaggttggt gttgacatga gtcaatttcc aactgctgga catctagctt cttgggcagg
    27421 actttgtcca ggtaataatg agagtgctgg taaaaaacga agtaccaaga ttcgacacgg
    27481 aaattcatat ttgaagaaat gtttatgcca agccgctttc g
//
LOCUS       DASGCC010000010        26951 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.010, whole genome shotgun sequence.
ACCESSION   DASGCC010000010 DASGCC010000000
VERSION     DASGCC010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26951
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.010"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..775
                     /locus_tag="U1404_000275"
     CDS             <1..775
                     /locus_tag="U1404_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347264.1"
                     /translation="VALLVLLAIGFVMSFWYILLPTGLLIGYFYKREAIQRFLNRDSI
                     KRSQVLALSIRSGYEKHQELFVEKGEDKVVLQLRNRLLGQLFELDQLYQKVGKYLNGY
                     ESKEVVDTLQLKYHLKLPEAKTEKNTDTQVSTGGNAVMDEQGMIADLAPEILETYCNI
                     QRDNLVILEKLEKATDKREELTAIHEANMNRFNDILQGYLKIKKSPKDYFNAEERLVQ
                     AKSAMEMFDKDLDDTIKQFNEAGMKDFEVSLRMMKREEE"
     gene            781..2052
                     /locus_tag="U1404_000276"
     CDS             781..2052
                     /locus_tag="U1404_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HEM5347265.1"
                     /translation="MSGFNFDIDQIANNSLSTKDKTTELIQATPTGDNSKVSFLAQLT
                     PEQQTGIRAKAPQLVDNFLANQNALLDFGKEAVEEVNATVNHILSEQKKIEIPQVDEL
                     LANTNRELNGFVAKYKDISTTAELEKKPGFFQRLFKQTKNDLQEFYFDSQTIEKKMDS
                     MAASVVKQEEVLARNIVSAELLIENNTKSIENLVGVIAFIEATGQEAAERAKLAQENL
                     ATLVPTTVDYQVASEKLARVTEVANILEQQHSEYMSRLYVAWTTTPQMRNLVKVSSDM
                     KQRLGMLRRNTIPTMKLSIAQLGILQQSIKSSQTADAIVNANNAALQMLADTSKEAIP
                     MMERTAQNPTLSVASVTKLAESLVAQNNGIIAAIDEGRQKRRELEAAIVRSAETINDS
                     VKLRDQKIIAALLEQGKEAQSEAEQPLETNQ"
     gene            complement(2089..2955)
                     /locus_tag="U1404_000277"
     CDS             complement(2089..2955)
                     /locus_tag="U1404_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5347266.1"
                     /translation="MVRLKNILLILLGAGLFAFGLNYLIMPNRLFEGGATGLTLIIYY
                     LFHIQPWIMNIVINIPLFILGWKILGKKTLYLSILGTFSVTFWLAIFEKIHFSINLQQ
                     DLILVSILGGILMGLGLGTIFRAGGTTGGSDIIARIGHKFLPYSIGQIILAVDILILT
                     LIVIVFKDLRTVLYTLMMVAIASKVIDFVTEGGYGSKGVMIVSQKSDQLAQAIDCEIE
                     RGVTFIKAQGFYSKADVNMIYSVIYKSQLQEMKELIHRIDPHAFITITDAHEVLGEGF
                     TLDRDKKPIERH"
     gene            3130..3768
                     /locus_tag="U1404_000278"
     CDS             3130..3768
                     /locus_tag="U1404_000278"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEM5347267.1"
                     /translation="MRNGFFITFEGPDGAGKTTVLQQLLPALQELGPEVVTTREPGGV
                     AIAEEIRNIILNPANTEMDDKTELLLFIAARRQHLKEKILPPLAQGKLLLIDRFIDSS
                     IAYQGFGRGLDIGDIHWLNQFATDGLKPDLTLYFDIDTEEGLARIARNADRDVDRLDM
                     EKADMHRRVRQGYLNILEQEPERFVKIDASQPLEAVVADALAVIKKRFAERT"
     gene            3765..4649
                     /locus_tag="U1404_000279"
     CDS             3765..4649
                     /locus_tag="U1404_000279"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEM5347268.1"
                     /translation="MKIEELRNLQPNVFQRFVTILEQRRLVHAYLFSGDFASFDMAIF
                     LSQSLFCQEKEGVLPCQKCRSCRLIEANEFSDLTVIAPQGNVIKTDTIRELVKNFSQS
                     GFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHILLLTNQEEAVLPTIKSRTQI
                     IGFPKNIPAMERMLEEEGLLKTQANLLAQLVSSQEEAKKLAENKNFLDLMGQTKKFTD
                     LLLVEPTRAYLQVGILVSLAVEKAEQGRLFDLLSLILSEKMMESANVREKMDAVLKAK
                     KMWQANVSLQNSLEYITL"
     gene            4669..4986
                     /gene="yabA"
                     /locus_tag="U1404_000280"
     CDS             4669..4986
                     /gene="yabA"
                     /locus_tag="U1404_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HEM5347269.1"
                     /translation="MDKKEIFDALDDFSQNLLTTLAEVDAIKKHLQGVIDENTTLRLE
                     NSKLRERLEKEDKTGHKSSNFGKENLENIYEDGFHICTFSYGQRRDNDEPCMFCVELL
                     NRD"
     gene            4988..5851
                     /gene="rsmI"
                     /locus_tag="U1404_000281"
     CDS             4988..5851
                     /gene="rsmI"
                     /locus_tag="U1404_000281"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEM5347270.1"
                     /translation="MKVQKSFKGQTSFGTLYLVPTPIGNLQDMTFRAVQILKEVDIIA
                     AEDTRNTGLLLKHFEVETKQISFHEHNAHEKIPVLIDWLKSGQSIAQVSDAGLPSISD
                     PGHDLVGAAIAEDIPVVALPGASAGITALIASGLAPQPHIFYGFLPRKSGQQKEFFQE
                     KKTYPETQIFYESPYRVADTLENMLTVYGDRQVTVVRELTKLYEEYQRGSISELLEYL
                     EENPLKGECLIIVEGAGEEVYPSADEVDLKAEVEREIASGIKPNQAIKEVAKRYQLKK
                     QEVYDIYHGLG"
     gene            6321..7412
                     /gene="serC"
                     /locus_tag="U1404_000282"
     CDS             6321..7412
                     /gene="serC"
                     /locus_tag="U1404_000282"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEM5347271.1"
                     /translation="MTIYNFSAGPAVLPKPVLERAQAEFLDYNGSGMSVLEMSHRSKD
                     FDDIIKGAEATLRELMAIPDNYKVIFLQGGASLEFTMIPLNFAQGKKAYYLVGGSWGK
                     KAYTEAVKLSKTIAFEPILLGSTEDITYAELPTFDKNDIDPTAAYVHLTTNNTIEGTT
                     VYGIPDTNGVPVIADMSSNILAARYNVEDFAMIYAGAQKNIGPAGVTVVIVREDFLND
                     QPMLSSMLDYRIQAENDSLYNTPPAYSIYISKLVFEWVKEIGGVDEMEKINREKSGLL
                     YDYIDQSNFYTNPVRKKEERSVANIPFVSPSEGLDAKFVKEATTAGFKNIKGHRSVGG
                     MRASLYNAFPHQGVVELIEFMKKFAAENA"
     gene            7412..7969
                     /locus_tag="U1404_000283"
     CDS             7412..7969
                     /locus_tag="U1404_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347272.1"
                     /translation="MEIRLAHPNEMEAIVDILEDARAFLATSGINQWQGEYPNKENIF
                     DDILSGRGYVGIVDGKVAAYAAVHRGQEAEYEAIYEGKWQHNHPVYTTFHRIAAADEF
                     RGQGIIQTFLQGLIEGQKGPDFRCDTHEQNKTMQHILKKLGYVYCGKVPIDGERLAYQ
                     KIKQKSERSLYQEISEDDRWLLGNN"
     gene            8343..9524
                     /locus_tag="U1404_000284"
     CDS             8343..9524
                     /locus_tag="U1404_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEM5347273.1"
                     /translation="MVFSVRTFNNINQIGLKELGNKFQIDGDHAANPDAFIIRSENLH
                     GFDFPENLKAIARAGAGTNNIPIEEATEKGIVVFNTPGANANAVKEAVIASILLSARD
                     YIGATAWANTLSGDDVPKQVEAGKKQFAGTEISGKTLGVIGLGAIGARIANDARRLGM
                     NVLGYDPYVSVETAWTISSHVKRVDDLKEIFTNADYITVHVPLTDKTRGLFNADSFGQ
                     MRKGTTLINFARGELVDNADLFEAIEAGVIKNYITDFGTEEVLNKDNIIVFPHVGGST
                     EEAELNCAIAAGQTIRRFMETGEIINSVNFPNVKQFLDAPYRITLINKNIPNMVATIT
                     TAVSELGINIDNIINKSKGDYAYTLLDLDEADKVKIEQLVAKFEATDAIVKVRVIQNK
                     N"
     gene            9527..10033
                     /locus_tag="U1404_000285"
     CDS             9527..10033
                     /locus_tag="U1404_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM5347274.1"
                     /translation="MLYKQVYHSPLGPMSLIASDKGLRGAWFEGQKYFERGLNEKAIL
                     ASHPILDQTVRLLDQYFSGVQVDFSNLPLEAVGTNFQEHVWQLLKMIPIGQTTTYGQL
                     AQQLGLRSGQAVGGAVGRNPYSIIVPCHRVLNQKGQLTGYAGGLDKKIWLLRHENPEF
                     EVKDDFIL"
     gene            10017..10370
                     /locus_tag="U1404_000286"
     CDS             10017..10370
                     /locus_tag="U1404_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEM5347275.1"
                     /translation="MILFYEYPKCSTCRAAKAELKSLGLEFEAIDIKSTPPSAEELKA
                     WMEATGLELKKYFNTSGNSYRELGLKDKFDSLSLEQALNLLANDGMLIKRPLLIQDGK
                     ILQIGYRTKYENLGL"
     gene            complement(10387..11286)
                     /locus_tag="U1404_000287"
     CDS             complement(10387..11286)
                     /locus_tag="U1404_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM5347276.1"
                     /translation="MDHKIIERKSLTVSSVMNGLSGLAGIAVYIMTDLNALLLDGAFS
                     LIAFISSLVAVYISKNSHRKTETFPQGLYFLEPLYAIMKSLATLLLLVFAVLETSATA
                     FAYFVHGIGHQMTTGPVLPYTITMFFVCMGLYLYNRHMSTKVNHLSTIILAEAKGNLV
                     DGLISGAIGIAILLLYLVPINSWFGFLHYTGDFFLTLALAIISFKEPWNLLVASFKEL
                     ANGTIHFPEIHDSIYQLLEPYLKEDSNDVEIHIFKQGMKIRVKINLHNIRHEIIQKLL
                     EDKPQMLYLLKKHHEYISIEYAL"
     gene            complement(11586..12413)
                     /gene="xth"
                     /locus_tag="U1404_000288"
     CDS             complement(11586..12413)
                     /gene="xth"
                     /locus_tag="U1404_000288"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEM5347277.1"
                     /translation="MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQE
                     TKLSDKGPTKKHLEILESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLSPTITFPEI
                     GAPTTMDSEGRIITLEFDDFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHK
                     PVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQGFTNLLAKGFTDTFRHLHGDVLN
                     AYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVSKSDMIDSGARQDHTPIVMEISF"
     gene            12569..14230
                     /locus_tag="U1404_000289"
     CDS             12569..14230
                     /locus_tag="U1404_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347278.1"
                     /translation="MKRKLFVFAWLALVLEMLIYYWYQLPALNILSVDFWIFFLQSVG
                     LVWLILSMFSSKGAFQKVTKISGRQRQVDTYQIKTSQLPAYLKWLGRIWVLVVLGLLG
                     LGLINSRVFRAKDYAAVISVKDADFKADFPETDISKLALLDRASAEKIGDTYLGTIDK
                     VSQFGISDDYRQITIGQQPFRVSPLEYKNFWKWLSNHQDGIGYYVKVNQTTGKAELAK
                     LSKAMHYSDSEFLLNDTLRHLRLQYPTTIFGKPSFEVDDQGNPYYIATIYEPKFGLSS
                     NDPIGAIVLDAVTGESKKYSLEDIPEWVDRVYSANNVISRVDDHYTYQNGFWNTIFSQ
                     TGVKNTTDSYNYISIGSDIYLYTGITSATADSSNLGFILVNMRTREITNYKLASATET
                     AAQESAEGEVQEKGYKATAPSLVKLADTAYYLVSLKDDAGLVKSYALVDAEDYQQVTV
                     NNDIALLISQVTGTDASSLSGLTVTENGEVGEQTEVISGKVEALASQIIGGATIYYIE
                     SEGKIYKVKATEDSTDRLPFIKVGDHFSGQLDKKNYLKNFKVNPE"
     gene            14390..15778
                     /locus_tag="U1404_000290"
     CDS             14390..15778
                     /locus_tag="U1404_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM5347279.1"
                     /translation="MSLFRKKQAVGRHSQMRRHLGLVDLIFLGIGSMVGTGIFTVTGL
                     AAAQYAGPALIISIVIAAISVGLTALFYAEFASRIPTNGGAYGYLYSVFGEFPAWIAG
                     WLTIMEFLTAVSSVASGWGAYLKGLLANFGIAMPTALNGTFNPAAGTYVDLLPVLVLI
                     FVVGVVLLNSKAALRFNSALVVLKFSALALFILVGLFFIKPENWSNFSPFGFGAIYGG
                     QAGIMAGASLMFFAFLGFESISLAIDEVKKPEKNVPKGIVLSLSIVTILYIVVTLVLT
                     GMVHYTKLNVADAVAFALREVGLDWAASYISIVAILTLITVCISMTYALSRMVYSISR
                     DGLLPKSLSRLTQTSKVPKNATILVGIFAAICAGIFPLASIASFLNICTLAYLIMLAL
                     GIIRLRQVEGLPKDGQFKTPLVPLLPILSIIICLSFMFQYSLDTWLAFGVSVVIGILI
                     YFCYGYRHSEAK"
     gene            15901..16782
                     /locus_tag="U1404_000291"
     CDS             15901..16782
                     /locus_tag="U1404_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5347280.1"
                     /translation="MSNSDIRAKATVIREQTDGMITLFLAPVLISFLSGVAEFGLKQI
                     WGQTGTFSWGTTIVKDGVTWTHNFISVGPSIIFDFIAQCLIVTACFQLIRLVRKQRTK
                     VNFTECFTLLDGKNFLPVFSTTLLKMLVLYLASFPAALGMILIGLAFYSTIVIFGAPI
                     DYQPDFSAFFSSSYFQTGLILVCVGITCSLFVGYGLSQVSFLLYDYLENNTYSSPFKL
                     FSQSWQLMKGNKWRRFLLDLSFIGWFIGVLLTFGFLGLYVYPYYWTCQTIFYEDLKAK
                     NPLMFSTYKSVISSTVA"
     gene            16975..17811
                     /locus_tag="U1404_000292"
     CDS             16975..17811
                     /locus_tag="U1404_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5347281.1"
                     /translation="MMTSDIVSRAMMTRERTRGTTLLFLPSILLSIVYAVPVTIFRLL
                     TFLELRQNSAVVEGRLVSSIRLTYLGELGFALLLQLFIGLSCFHLLELLRGDRQEFSL
                     KDSFSFLKTEWKKPICTTFLYYYLLLFMAGLPANLGAALFIKGFAMSSLMVLSPGAMA
                     ELAVHQPSQLMKIGAPIFLLGMIIYLFVYYTYSQVVFVLYDHLDNASYTGPLAVFRES
                     RFLMKGNYWQRIWLDLSFLGWFIGEVFTLHLLSFFVTPYYHLSRTIFYEKLKKQRLSA
                     VE"
     gene            complement(17829..18704)
                     /locus_tag="U1404_000293"
     CDS             complement(17829..18704)
                     /locus_tag="U1404_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5347282.1"
                     /translation="MKTEFINEKAQSAFNLNIITSPIVAIILLLVGDSLGAVIFTPIS
                     FLLPFSETLSVSFELFAFAFISLMVILWARYIEKSPWVGLGFTKKGAGKDFLLGWGIG
                     AAMLTTCTLIMWGLGAIEFTSIQFSTKLVGEFIILILAWSIQGTTEEILTRGWMFSSL
                     SAKHNIPIGIIVSSLFFTFLHLGNNAISLIPILDLTLFAVLACLIMLKTGNIWVIGGL
                     HAAWNCFQGNVFAFPVSGTDAGQAFVQIGITGPEWLSGGKFGLEGSIISLLVQGIMIS
                     WLVYDLYFKPKTSSL"
     gene            18827..19438
                     /locus_tag="U1404_000294"
     CDS             18827..19438
                     /locus_tag="U1404_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3885 domain-containing protein"
                     /protein_id="HEM5347283.1"
                     /translation="MELNQWLKSFQLKDNRLVGPFFYGTLLALRFEIGPADEAEELSR
                     AIYLERAYARAVELFEQASSEYDYVLLSLLRQEDRDIDTYLWHFSSKFNFDKVPEPEL
                     IEVEDWTGDVLVFECYLFPVTDQDLKALLREIVKADHGGFHYLSASVIFLSSKDKVLY
                     HCYDDRGVDIAVVDDDKRRQLFTDCHDLLFDYDMEEMVRRMDF"
     gene            19639..22399
                     /locus_tag="U1404_000295"
                     /pseudo
     CDS             19639..22399
                     /locus_tag="U1404_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006532944.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
     gene            22396..24318
                     /locus_tag="U1404_000296"
     CDS             22396..24318
                     /locus_tag="U1404_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM5347284.1"
                     /translation="MSQLFEVTYGQKKTSVNTNELGMREMQARVCEKRNSPYLLVKAP
                     PASGKSRALMFVALDKLKRQGLKKAIVAVPEKSIGKSFRSTKLSDFGYYWDWIVKDEN
                     NLTTSGTAKSKVEKFINFIQSTDETDDVLIVTHATLRFASEQLDASDFDACLLAIDEF
                     HHVSQDDNSVLGNALREVLQKSTAHIFAMTGSYFRGDSVPILDHADEARFERVTYTYY
                     EQLEGYQYLKSFVMNYKFYRGRYTDAFPDLLPEFIDKKTIIHIPNVNSGESSKDKYGE
                     VDEILDCLGDYLHKDEHGIIHLRSKTGKILKIADLVTEDGRDLVSNYLAKMDSEDELD
                     MIIALGMAKEGFDWPFAEYALTIGYRSSLTEIVQIIGRVTRDSSNKTKAQFTNLIAEP
                     DAEDEEVQFSVNNIMKAITASLLMENVLSPSFKFKRKENDGQKANGAEIFIKGLAKPS
                     TERTQKIIEQDITDLKASVLQDDVVQAAISAGAESKVITKQLIPRVIATRYPDLTQTE
                     VEEVRQHLVADLTLSNAKKDSENNKLLKMADKFINIDDLSIDLIDSVNPFQGAYEVLS
                     RDVDSRTLSLIARVFDAKKVEFTTDELRMLYPQIKAFQAEHGHSPRRNSSDLEEERLY
                     FALAKLDELRRERDNQ"
     gene            24315..24530
                     /locus_tag="U1404_000297"
                     /pseudo
     CDS             24315..24530
                     /locus_tag="U1404_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004233099.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            24595..25473
                     /locus_tag="U1404_000298"
     CDS             24595..25473
                     /locus_tag="U1404_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006532941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM5347285.1"
                     /translation="MMDDLDDILNDDSLFENFETDRTLFSTKRYQGTVRARSKSSSRT
                     RVQTGFDTYRKLFTQVHADIACGKRQIKSIEETSQGNRISRKNPIKQGNFYVDNGVML
                     YVVKIYDPQTNVEVGQSTERKYKVHIVYENGTENHVWLLSLISSLYDKKRSGRLVTEP
                     LDTISMLGEEAAKYHTTGYIYVVKYAGTDNRFLELDNLYKIGVATDIKKRLSNSQNEA
                     TYLYAPVHLVASYEIQNVSASKLEKFLHDAFSDKRVQLETASPTGKKVSVTEWFVVEL
                     EQIEQKIYELFKQLNL"
     gene            25798..26544
                     /locus_tag="U1404_000299"
     CDS             25798..26544
                     /locus_tag="U1404_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347286.1"
                     /translation="MPYRKLTSRDRSFIKGQTDRLLNQMNSNAAYLGTVQTYEAAKAR
                     ANQAYLAMELEDDPEKKVRLAKLVENYTAQAQAILDEWEEKNSRTEKTTRNVKLILWL
                     TVLFTLSFVFPVNIILAILFSVWFYRNYLRSSRTDQVIKAANSQSLTEEERFEDWLTE
                     KIVVLNKDKRQWTEGIIAKYDSLDEIAAGIGEMDEIDKVAGEKLLRRYQDILADIEKL
                     PDSEQKTYYLDFHQEIIADLEDLFQQLHFG"
     gene            26702..26951
                     /gene="tnpA"
                     /locus_tag="U1404_000300"
                     /pseudo
     CDS             26702..26951
                     /gene="tnpA"
                     /locus_tag="U1404_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT         8219 a         4823 c         5976 g         7933 t
ORIGIN      
        1 tgtggccctc cttgttttat tggcaatcgg ttttgtcatg agtttctggt atatcttatt
       61 gcctactggg ctcttaattg gctattttta caagagagag gctatccagc gttttttgaa
      121 tagagattct ataaaacgct cgcaggtatt agcgctatct attcgttcgg gctatgaaaa
      181 gcatcaagag ctctttgtgg aaaagggtga ggataaggtt gtgttacagt tgagaaatag
      241 actgttagga caattatttg aattagatca gctctatcaa aaagttggaa aatatctgaa
      301 tggatatgaa agtaaagaag ttgtagatac cttgcaacta aaatatcatt taaaactgcc
      361 agaagctaaa acagaaaaaa atactgacac acaggtttct actggtggta atgctgtgat
      421 ggatgaacaa ggcatgatag cggatttagc tcctgaaatt ctagaaacct attgtaatat
      481 tcaaagagac aatcttgtta ttcttgaaaa gctggaaaag gcgacagata agagggaaga
      541 attgacagct atccatgagg ccaatatgaa tcggtttaac gatattttac aaggttattt
      601 gaaaatcaaa aaatcaccga aagattattt taacgcagaa gaacgattgg tgcaggcaaa
      661 atcagccatg gaaatgtttg ataaggattt ggatgatacc atcaaacaat ttaacgaagc
      721 gggtatgaaa gattttgaag tcagtctgcg tatgatgaaa agagaagagg aatagagaag
      781 atgtcaggat ttaatttcga tattgatcag attgctaata atagtttatc aaccaaagat
      841 aagacaacag agcttattca agcgactccg actggagata attcaaaagt gtctttcttg
      901 gcacagttga caccggaaca acaaacaggt attcgtgcta aggctcccca attggtggat
      961 aatttcttag ctaatcaaaa tgccctcttg gattttggta aggaagcggt agaagaagtc
     1021 aatgccacgg tcaatcacat tttgtcagaa cagaagaaga ttgaaattcc acaggtggat
     1081 gagcttttgg ccaataccaa ccgtgaattg aatggttttg tggctaagta taaggacatt
     1141 tccacaactg ctgaattaga aaagaaacca ggtttcttcc aacgcctgtt caagcagacc
     1201 aaaaatgatt tgcaggaatt ttatttcgac tcgcagacca ttgaaaagaa aatggatagc
     1261 atggcagcca gtgtggtcaa gcaggaagag gtgttggcgc gcaatattgt ttctgcagag
     1321 cttttgattg aaaataatac caagtctatc gagaatttgg tgggggtcat cgcctttatt
     1381 gaagcgactg gtcaggaagc ggcagagcgt gcaaaattgg cacaagaaaa cctcgcaact
     1441 ttagtaccga ctacagtcga ttatcaagta gcttctgaga agttggcacg tgtaacagag
     1501 gttgctaata tcctcgaaca acaacattct gagtatatga gtcgcttgta tgttgcgtgg
     1561 acaacgacac cgcagatgcg taatctggtc aaggtttctt cggatatgaa acagcgcctt
     1621 gggatgttac gtcgcaatac tattccaaca atgaaattgt ccattgcaca gttgggcatc
     1681 ttacaacaat ctatcaagtc tagccagacg gcagatgcga ttgtcaatgc taataatgct
     1741 gcccttcaaa tgcttgcgga tacatcaaaa gaagccatcc cgatgatgga acgcacagct
     1801 cagaatccga ccctttcagt agcatctgtt accaaattgg cagaaagttt ggttgcccaa
     1861 aataatggca ttattgcagc tatagatgaa gggcgtcaga aacgtcgtga gttggaggca
     1921 gctattgtac ggtcagcaga gactatcaac gattctgtta agctacgcga tcaaaaaatc
     1981 attgctgctt tgctggagca aggcaaagaa gcacagtctg aggcagagca accacttgaa
     2041 accaatcaat aatataaaac ctgcagttca gcgaaactgc aggtttgttt aatggcgttc
     2101 tattggtttt ttatctcgat ctaaagtaaa tccctcaccg agtacttcat gtgcgtctgt
     2161 aatggtgata aatgcgtggg ggtcaatacg atgaataagc tccttcatct cttggagttg
     2221 gctcttatat atgaccgagt aaatcatgtt gacatcggct ttgctgtaga aaccttgtgc
     2281 tttgataaag gtgacaccac gctcgatttc acaatcaata gcctgagcca attggtcaga
     2341 tttttgagaa acaatcataa cccccttgct accatatccg ccctcagtga caaaatcaat
     2401 aaccttggaa gcaatagcaa ccatcattaa agtatataga actgttcgga ggtctttaaa
     2461 aacaataaca atcagagtta ggatgaggat gtcaactgca agaatgattt gtccaatgga
     2521 gtaaggtagg aatttatgac ctatacgagc aatgatatcg cttcccccag tcgttccgcc
     2581 agcacggaag atggttccta atcctagtcc cataagaatc ccacccagga tactaacgag
     2641 tatcaaatct tgttgtagat tgattgaaaa atggattttt tcaaaaatgg ccaaccaaaa
     2701 ggtaacgcta aaggttccta agatactgag atagagagtc ttctttccga gtattttcca
     2761 cccgaggatg aacaatggaa tattaatcac aatgttcatt atccaaggtt gaatatggaa
     2821 aaggtagtaa ataatcagcg tcaatccagt tgcgccaccc tcgaacagac gattgggcat
     2881 gattaaataa tttagcccaa aggcaaatag ccctgcacca agcaaaataa gtaaaatatt
     2941 tttcaaacga accataagca tctccgaata tgtgtatata tcaattttaa aagattttct
     3001 ccttaaaaac aagtcaattt tcaagtgatt ttttgactaa tttttggtaa aatggaatga
     3061 atatctaaga accagtcttc acaagtgaag tgctgaactg tgcatactgg tactaagagc
     3121 gagggaaaga tgagaaacgg tttttttatt acatttgaag gtccagatgg ggcagggaaa
     3181 acgacggtat tgcaacagtt attgccagcc ttgcaggaat tggggccaga agtagtcaca
     3241 actagagagc caggtggggt ggctattgca gaagaaattc gcaatattat tctgaaccct
     3301 gcaaatactg aaatggatga taagacggag ctgttattgt tcattgcagc acgacgtcag
     3361 catttgaaag agaagattct tccacccttg gcacagggga aattgctctt gattgatcgt
     3421 tttatcgatt cctctattgc ctatcaagga tttggacggg ggttggatat aggtgacatt
     3481 cattggctca accagtttgc aacagatggt ttaaagccag atttaaccct ctattttgat
     3541 attgatacag aagaggggct ggctcgaatt gcccgcaatg ctgaccgtga tgtggatcgc
     3601 ttggatatgg aaaaagcaga tatgcataga cgggtgcgtc aaggctatct taatatttta
     3661 gagcaggaac cagagcggtt tgtaaagatt gatgccagtc agccactaga ggctgttgtt
     3721 gcagatgctc tggcggtcat taagaaacgg tttgcagaaa gaacatgaag attgaagaac
     3781 ttagaaactt acaacccaat gtatttcaac gttttgtgac aattttagag cagagacgtt
     3841 tggtgcatgc ctatctattt tcaggtgact ttgctagttt tgatatggca atttttctca
     3901 gtcaatcgtt attttgtcag gagaaagaag gcgtccttcc ttgtcagaag tgtcggtctt
     3961 gtcgtctaat tgaagcaaat gagttttcag atcttactgt tattgcaccg cagggaaatg
     4021 ttatcaaaac agatacgata cgtgaattag ttaagaattt ttcacaatct ggatttgaat
     4081 ccaataagca ggttttcatt attcgtgatg ctgagaaaat gcatgctaac gcagccaact
     4141 ctttgctaaa agtgattgaa gaacctcagt cagccattca catcttatta ttgaccaatc
     4201 aggaagaagc tgtccttcct actatcaaga gtcggacaca gattataggt tttcctaaaa
     4261 atattccggc catggagcga atgttagaag aggagggctt gttaaaaaca caagcgaatc
     4321 tcttagctca actggtttca agtcaagaag aagcgaaaaa gttagcagaa aataaaaact
     4381 ttttagattt gatgggacag acaaagaaat ttacagactt gctcttggtg gagcctacac
     4441 gtgcttattt gcaagttgga atcctagtgt ctttagctgt ggaaaaagct gagcagggac
     4501 gtttgtttga ccttctgagt ctgatattat ctgagaaaat gatggaatcg gcaaacgtac
     4561 gtgaaaaaat ggatgctgtt cttaaggcta agaagatgtg gcaggcaaac gtaagtctac
     4621 aaaatagtct agagtatata actctgtaaa ataaaagaaa gggagataat ggataaaaaa
     4681 gaaatttttg atgccctaga tgatttttcg cagaatcttc taaccacgtt ggcagaagtg
     4741 gatgctatca aaaagcattt acagggagtt attgatgaaa atacgaccct ccgcttggaa
     4801 aattccaagt tgcgcgaacg tttggaaaaa gaagataaga caggccataa atcttccaac
     4861 tttggtaagg agaatttgga gaatatttac gaagatggtt tccatatttg taccttctct
     4921 tatggtcaac gtagggataa tgatgaacct tgtatgttct gtgtagaatt attgaatcga
     4981 gattaggatg aaagtacaaa aatcatttaa gggacagacg agttttggga ctttatatct
     5041 ggtgccaacg cctattggaa acttacagga tatgacattc cgagctgttc agattttgaa
     5101 agaagtggat ataattgcag cggaagatac aagaaataca ggactcctac tcaaacattt
     5161 tgaagtagaa accaagcaaa tatcctttca tgaacacaat gcccatgaaa aaattccagt
     5221 tttgattgat tggctcaaat ctggtcagtc cattgcgcaa gtttctgatg caggcctgcc
     5281 ttccatttcg gatcctggtc atgacctggt aggggcagcg attgcggaag atattcctgt
     5341 tgtagcactt ccaggagcat cggcaggaat tacagccttg attgcatctg gtttggcacc
     5401 ccagccacat attttttatg gatttttacc gagaaaatcg gggcagcaaa aagaattttt
     5461 ccaagaaaaa aagacctatc ctgagacgca aattttctat gaatctccat atcgtgtggc
     5521 agatacctta gaaaatatgt tgacagttta tggtgatcgt caggtaacag ttgttcgaga
     5581 attgaccaag ttatacgaag aataccagag aggaagcatt tccgaattac tagagtattt
     5641 ggaagaaaat ccacttaagg gagaatgctt gattattgtc gagggtgctg gtgaggaagt
     5701 ctatccttct gctgacgaag tagacttgaa ggctgaggta gaaagggaaa ttgcaagtgg
     5761 cataaaacct aatcaggcta tcaaagaagt ggccaaacgc taccaactca aaaaacaaga
     5821 agtatacgat atatatcatg gactaggtta agacctagtt tttttgtatg tttatgcaag
     5881 cttatactct tcgaaaatca aaattatccg ttgtcaagag ccttgatgag tgaaaagctc
     5941 cagtggatct tttcagtctg ttaccttgaa atgagaaagg aacagagttc tatcttcggc
     6001 ttaatgacgc gaacacagtt ctctatactt ccagccttca actatatccc agctaagcta
     6061 cttttgattt tcattgagta ttaatatgca gatagcaatt ggcgacactc ccaaaacagt
     6121 caaatctggt cataaaattt tcattgaaac ctgatgaatc cctgtgaggc aagcgcctcg
     6181 tttatggcta aaagtaagag gttctttaga aagtagaata aatataagaa atccgaatgt
     6241 ttttacaaaa taatcatatt ttatggaatt gtctgaatat ttgtgatata atgaacagac
     6301 taacttaatg gagggatttt atgacaatct acaacttctc tgcaggtcct gcagtattgc
     6361 caaaaccagt acttgaacgc gcccaagctg aattcttgga ctacaatggt tcgggaatga
     6421 gcgttttgga gatgtcgcat cgctccaagg acttcgatga tattattaaa ggtgctgagg
     6481 caacgcttcg tgaattgatg gccattccag ataattacaa ggttattttc ttgcaaggtg
     6541 gagcttcttt ggaattcaca atgattcctc tcaacttcgc tcaaggtaag aaagcctact
     6601 atcttgtagg tggctcatgg ggtaaaaaag cctatactga ggctgtgaag ctgtctaaaa
     6661 caattgcctt tgaaccaatt ttgcttggat caacggaaga tattacctat gcagaattgc
     6721 caaccttcga taaaaatgat attgatccaa ctgctgctta cgtgcatttg acaacaaata
     6781 acactattga aggaacaaca gtttatggta ttcctgacac caatggtgtg ccagtcattg
     6841 ccgacatgtc ttcaaacatc ttagcagctc gctataatgt tgaagatttt gccatgattt
     6901 atgctggcgc tcagaaaaat attggtcctg ctggtgtgac ggtggtgatt gttcgtgagg
     6961 acttcctcaa tgatcaacca atgctttcaa gcatgttgga ctaccgtatt caagcagaaa
     7021 atgactctct ttataatacg ccaccagctt attctatcta tatttctaaa ctcgtctttg
     7081 aatgggtaaa agaaattggt ggtgttgatg agatggaaaa aatcaaccgt gaaaaatctg
     7141 gtttgcttta tgactatatc gaccagtcta atttctatac aaaccctgtt cgcaaaaaag
     7201 aagagcgttc agtagcgaac attccttttg tctcaccaag tgaaggatta gatgccaagt
     7261 ttgtcaaaga agcaacaaca gctggtttta aaaacatcaa aggtcaccgt tcagtaggtg
     7321 ggatgcgggc gtcgctctat aatgctttcc cacatcaagg tgtggttgaa ttgattgaat
     7381 tcatgaaaaa atttgcagcg gagaatgctt aatggaaatt agattagcac atccaaatga
     7441 gatggaggct attgtcgata ttcttgaaga tgctcgtgca tttctagcaa cctctggtat
     7501 caatcaatgg cagggagagt atcctaataa agagaatatc tttgatgaca ttctttctgg
     7561 cagaggttac gttggtatag ttgacggtaa ggtggcagcc tatgccgccg ttcatcgtgg
     7621 tcaagaagca gaatatgagg ccatatatga aggaaaatgg cagcacaatc atcctgtata
     7681 tacaacattt catagaattg cagcagctga cgaatttcgt ggtcaaggaa tcatacaaac
     7741 ttttttgcaa ggtttaattg aaggtcaaaa aggaccggat ttccgctgtg atacccacga
     7801 gcagaataag acaatgcagc acattctaaa aaaattaggc tatgtctatt gtggtaaagt
     7861 cccaatagat ggagaacgtc tagcctatca aaaaatcaag caaaagagcg agcggagtct
     7921 ttaccaggaa atcagtgaag acgaccgttg gttactcgga aataattaat gaaataaaga
     7981 aagaaaagga ccgggaaaaa gcttcatatc acttctcaag gttcgagtca acatctcagc
     8041 acagtggttg attgggttta acagtccagt ggactgttaa aggttggaga taagatttgc
     8101 gaagcaaatc tcagcagttc gtattttata ctccaaatct gacctctacg actgatgcga
     8161 acagagttca ccttatctcc aacctcaaac tgtctcccag acagtttgag ctgtgcgggg
     8221 gtgggagtga aacagtctgg gaatagactg tttcagctca acaaatagaa ataaagactt
     8281 gttgacgaac tcttctagga gtggttgagt tctttcccac tccccttttt aggtaaaaat
     8341 aaatggtatt tagcgtacgt acttttaaca atatcaatca aattggtctt aaggaattag
     8401 gcaataaatt ccagattgac ggagatcatg cagcaaatcc agatgccttt attattcgat
     8461 ctgaaaattt gcatggattt gattttcctg aaaatctaaa agctattgcc cgtgctggtg
     8521 cagggactaa caatattcca atcgaagagg caacagagaa aggtattgtt gtctttaaca
     8581 ctccaggtgc caatgccaat gccgtaaaag aggcagtcat tgcttccatt cttttgtcag
     8641 cacgtgacta tatcggagcg actgcatggg caaatacatt gtcaggagat gatgtaccta
     8701 agcaggttga agcaggtaag aagcagtttg ctgggacaga aatttcaggt aagactcttg
     8761 gtgttatcgg acttggtgct atcggtgcgc gtattgccaa cgatgcccgc cgtttgggga
     8821 tgaatgttct cggttacgac ccttatgtat cagtagaaac tgcatggacc atttcaagcc
     8881 atgtcaaacg tgtggatgac ttgaaagaaa tctttaccaa tgcggattac attactgttc
     8941 atgttccttt gacagataag acacgaggac tcttcaatgc ggatagcttt ggtcaaatga
     9001 gaaaaggaac aaccttgata aactttgccc gaggtgaatt ggttgataat gctgatttgt
     9061 ttgaagcaat tgaggcagga gttatcaaga actatatcac ggattttggg acagaagaag
     9121 tgctcaacaa ggacaacatt atcgtcttcc cgcacgttgg tgggtcaaca gaggaagcag
     9181 agctcaactg tgccattgct gctggtcaga ccattcgtcg ttttatggag acgggtgaaa
     9241 ttatcaactc agttaacttc ccaaatgtga aacaattcct agatgcaccg tatcgtatta
     9301 ccttgattaa taagaatatt cctaatatgg tggcaacgat cacaacggct gtatctgagt
     9361 tgggaatcaa tatcgataat atcatcaata agtctaaagg tgactatgcc tatactttac
     9421 ttgatttgga tgaagcggat aaagtgaaaa ttgagcagtt ggttgctaaa tttgaagcaa
     9481 cggatgcaat tgtcaaagtg cgtgtcattc agaataaaaa ctaatcatgc tgtataaaca
     9541 agtctatcac agtccacttg gccccatgtc attaattgct agtgataagg gattgagagg
     9601 ggcctggttt gagggacaaa aatattttga acgaggcttg aatgagaaag ctattttagc
     9661 ctcccatccc attttagacc agacagttcg attgcttgac cagtattttt caggggttca
     9721 ggtggacttt tcaaaccttc cattagaagc tgtgggaaca aatttccaag agcatgtctg
     9781 gcaattattg aagatgattc cgattggtca gacgactacc tatggacaac tggctcagca
     9841 actgggcctt cgttctggtc aggcagtagg aggagcagtt gggcgtaatc cttattcgat
     9901 tattgttcct tgtcaccgag ttctcaatca gaaaggacag ttgacaggtt atgcaggtgg
     9961 actggataag aaaatctggc tcttgcgaca tgagaatcca gaatttgagg tgaaagatga
    10021 ttttatttta tgagtatcca aaatgttcga cttgccgagc agcaaaggcg gagctgaaga
    10081 gtttgggatt ggaatttgaa gctattgaca ttaagtcaac accgcctagt gctgaagagc
    10141 taaaagcttg gatggaggcg acaggactag aattgaaaaa gtattttaat acttctggga
    10201 atagctatcg tgaactaggt ttgaaagata agtttgatag tcttagcttg gagcaggcac
    10261 ttaatcttct agctaatgat ggtatgctga ttaagcgtcc cctactaatt caggatggta
    10321 aaatcttaca gattggctat cgaacaaaat acgaaaatct cggtttataa gccgagattt
    10381 tgtttattat agcgcatatt ctattgaaat atattcatga tgttttttca aaagatagag
    10441 catctgaggc ttatcttcta agagtttttg gataatttcg tgacggatat tgtggagatt
    10501 gattttaacg cgaatcttca tgccttgttt gaaaatatgg atttcgacat cattgctatc
    10561 ttcctttaag taaggctcca atagctgata gatagaatca tgtatctcag ggaaatggat
    10621 tgttccgttg gcaagttcct tgaaagatgc cactaataag ttccaaggtt ccttaaatga
    10681 aatgattgct agtgctagtg tcaaaaagaa gtcaccagta taatgcagga agccgaacca
    10741 agagttgata ggaacaagat agagcagaag aattgcaatt ccaattgcac ctgaaatgag
    10801 tccgtctaca aggttgcctt ttgcttctgc taatatgata gtagacagat gattgacttt
    10861 ggtactcata tggcggttgt ataggtaaag ccccatacag acaaaaaaca tggttatggt
    10921 ataagggaga acgggacctg tagtcatttg atgaccgatt ccatgaacaa agtaagcaaa
    10981 ggctgtcgcg ctagtttcaa gtacagcaaa tacaaggagt agtagagttg cgagagattt
    11041 catgatagcg tagagaggtt ctagaaaata cagtccttga ggaaaagtct cggttttccg
    11101 atggctattt tttgatatgt aaactgcaac taaggacgaa ataaatgcta ttagagaaaa
    11161 ggctccgtct aggaggaggg cgtttaggtc agtcatgata taaacggcaa tacctgctag
    11221 tccagataaa ccgttcataa cagaggaaac agttagagat ttgcgttcga taattttgtg
    11281 gtccataatc cctcctttta atgtatatct atatatttat tttaccacaa aatgacaccg
    11341 ttttcaaatt gagcggatta aaacaaggta gagaggtaga gtgataagaa ataaaggctc
    11401 aaaacccttg caatagacct acgggtttta agcctttaat atctgttatc tgataattga
    11461 aatcaggtta tactcttcga aaatcaaaat cagacgttgt tgacttgatt tgatgaactt
    11521 cagttctatc tgcatctgcg tcgcctagtc tgattttgat tttcattgag tattaatatc
    11581 cactgttaga atgaaatctc catcacaatt ggtgtatggt cctgacgagc accggaatca
    11641 atcatatctg acttacttac tttgtcggcg atgcggtcgc tgacaagcca gtaatcaatt
    11701 ctccagcctg tgttgttgat tttactggtg cggctacgtt gtgcccacca agtataggcg
    11761 ttgagaacat caccgtgcaa gtggcggaag gtatctgtaa aaccttttgc tagaagattt
    11821 gtaaaacctt gacgttcttc atctgtaaac cctggagatt gacggttact tgcgggatta
    11881 gcaaggtcaa tttccttgtg agcaacgttg tagtcacctg ttgcaagaac aggtttgtgg
    11941 ctatcaagtt ttgctaagta gtcagcatac tgtacatccc agatttgacg gtcagcaagc
    12001 cgtttcaagc catcaccagc atttggcgta taaacttgtg tgacatagaa gtcatcaaat
    12061 tctagcgtga tgatacgccc ttcagaatcc atggttgttg gagcaccaat ctcagggaag
    12121 gttatggttg gacttagatg gtttttgtag aggaagagtg taccagcata gcctttgcga
    12181 gctggttcta cagatgaacg ccaggtattg gcatatccag ggaagtagct ttccaaaatt
    12241 tctagatgct ttttagtcgg tcccttatct gacaattttg tttcctgaat ggcgataata
    12301 tcagcgtctt ctgtcacaag tgtatcgatg actgcacgtg ataatagggc gcgaggagac
    12361 tctgcagtca atgcagcgtt aagagaatca atattccaag aaatgagttt cataattttc
    12421 cttttctagt ctgttactgt tttacattat accaaaaata aaagttgcag gcgaatatgg
    12481 aaacttgaaa aaaattttat aattcttgta ttataacatt aaaattgtga tacaatagaa
    12541 ctaataaatc tgtgtcaagg aggttattat gaaaagaaaa ttatttgttt ttgcctggtt
    12601 agccctagtt ttggaaatgc taatctacta ctggtaccag ttgcctgctt taaatatttt
    12661 gagtgtggac ttctggatat ttttccttca atctgtcgga ttggtctggc tcatactttc
    12721 catgttcagc tccaaaggtg cttttcaaaa ggtgaccaag atttccggtc gccagagaca
    12781 agtagatacc tatcagatta aaacctcgca actgccagct tacttaaaat ggttgggacg
    12841 aatttgggta ttggttgtcc tgggtttgtt ggggctgggg cttatcaact cacgtgtatt
    12901 tcgtgctaag gattacgctg ctgtcataag cgttaaggat gcggatttta aagcagattt
    12961 tcctgaaaca gacatatcca aattggccct cctagaccgc gcctcggccg aaaaaatcgg
    13021 tgatacttat ctaggtacca ttgacaaggt ctcccagttt ggcatttcgg atgattatcg
    13081 ccagattact atcggtcagc aaccgttccg tgtatcgcct ttggaatata agaatttttg
    13141 gaaatggctg agcaaccatc aagatgggat tggttactac gtgaaggtta atcagacaac
    13201 agggaaggca gaacttgcca agttgagcaa agccatgcac tattcagatt ccgaattttt
    13261 gctgaatgat accttacgtc atcttcgctt gcaatacccg acaactattt ttgggaaacc
    13321 atccttcgaa gtggatgacc aaggaaatcc atattatatt gcaacgattt acgagccaaa
    13381 atttggactt tcatcaaatg atccgattgg tgctattgta ttggatgcag taacagggga
    13441 aagtaagaag tatagtctgg aagatattcc agagtgggta gaccgtgttt attcggcaaa
    13501 caatgttatc agccgtgtag atgaccacta tacttatcaa aatggtttct ggaataccat
    13561 tttcagtcaa actggtgtga aaaatacaac agacagctat aattatattt ctatcggctc
    13621 agatatttat ctctacacag gtatcacctc agcaactgct gattcatcca accttggatt
    13681 tattcttgtc aatatgagaa ctcgtgaaat taccaactac aaattggctt cggcgacgga
    13741 aacagcagcg caagagtccg cagaaggtga agtgcaggaa aaaggctata aagccactgc
    13801 tccaagcctg gttaagttgg cagatacagc ctactattta gtatccttga aagatgatgc
    13861 cggcttggtt aaatcatacg ctcttgttga tgccgaagat tatcaacagg ttactgttaa
    13921 caacgatatt gcgctcttaa tttctcaagt cacaggaacg gatgcttcta gcctttcagg
    13981 attgacggtg actgaaaatg gagaagttgg tgaacagact gaggttatca gtggaaaagt
    14041 agaagcttta gcgagtcaaa taattggcgg tgcgacaatc tactatattg agtctgaggg
    14101 caagatttac aaagtcaaag caacggaaga tagtacagat cgattaccat ttatcaaagt
    14161 aggagatcac tttagcggtc agttagataa gaaaaattat cttaaaaact ttaaggttaa
    14221 tccagaataa tcataagaaa gagtgaggta gaaaagcctt gctcttttgc ttgtcgtcac
    14281 ccatgcgaaa tatttcaact tatggtataa tggggcgttg tggttctttg acaggaatcc
    14341 gtagattatt ctgtcgagta tccatattct tattctgaag gagtattttg tgagtttatt
    14401 tagaaaaaaa caagcagtcg gtcgccatag tcaaatgcgt cggcatttag gcttagttga
    14461 tttgatattt ttaggtatcg gttcgatggt tggaacaggt atctttacgg taactggttt
    14521 ggcagcagcc cagtatgcag ggccagctct gattatctca attgttattg cagcaatttc
    14581 agtcggacta acagccttgt tttacgcaga atttgcctcg cgtataccga ctaacggtgg
    14641 tgcctatggt tatctctact cggtttttgg tgaatttcct gcctggattg ctggctggct
    14701 gacgatcatg gaattcttga ctgctgtatc gagtgttgca tctggttggg gagcttattt
    14761 gaaaggactc ctggctaatt ttggtatcgc tatgccgaca gctttgaatg gaacttttaa
    14821 ccccgctgca ggtacctatg tagacctctt accagttctc gtcttgattt ttgtggtagg
    14881 agtggtcttg cttaattcta aggcagcact tcgtttcaat tcagccttgg tagttttgaa
    14941 attttcagcg ttggctttat ttattttagt agggttattc tttatcaaac cagaaaactg
    15001 gtcgaacttc tctccttttg gttttggtgc catttatggt ggacaggcag gaattatggc
    15061 aggagcgtct ctcatgttct ttgccttcct gggatttgag tctatttcat tagcaattga
    15121 tgaggtgaaa aaacctgaga agaatgtacc aaagggaatc gtgttgtctc tatccattgt
    15181 aacaattctt tatattgtag tgacattagt cttgactggt atggttcact atactaagtt
    15241 gaatgtggca gatgcggtag cctttgcact tcgagaagtt ggattggatt gggcagcgag
    15301 ttatatttct attgttgcaa tcctaacatt gattacagta tgtatttcga tgacctacgc
    15361 cttgtcgaga atggtctatt ccatcagtcg tgatggtttg ctaccgaaat cattgagccg
    15421 attgacacaa acaagcaagg ttcctaaaaa tgcgaccatt cttgtgggga tttttgcagc
    15481 catttgtgca ggtattttcc cactagcaag tattgcttcc ttcctcaata tctgtacctt
    15541 agcttatttg attatgctgg cgttgggtat tattcgtctg cgtcaagtcg aaggtttgcc
    15601 aaaagatgga caatttaaaa cacctcttgt tcccttgtta cctatcctct cgattatcat
    15661 ttgtctttca tttatgttcc agtatagttt agatacttgg ttagcattcg gagtatccgt
    15721 ggttattgga attttgattt acttctgtta tggctatcgt cattcggaag caaaataata
    15781 gatttccctt ctttatttga agggattttt tgtacaattt ttttatagaa ataatggaaa
    15841 acttaaaaat aaaatagtat aatatatata atgatacaaa tatatgaaag gagaaacgca
    15901 atgtctaata gcgatattcg agctaaagca acggttattc gtgaacaaac agatgggatg
    15961 ataaccttgt ttttggcacc tgttttgatt tcttttctgt caggagtggc agaatttggc
    16021 ttgaaacaaa tctgggggca aactggtact ttctcctggg ggacaactat tgtgaaagat
    16081 ggtgttactt ggacgcataa ttttatttct gtgggcccgt caatcatatt tgattttatt
    16141 gcacaatgtt taattgtgac agcttgtttt caactaataa gactggtgag aaagcaaaga
    16201 accaaggtta actttacgga gtgtttcact ttactagatg ggaagaattt tttaccagtt
    16261 tttagtacga cattattgaa aatgctggtc ttgtatttag caagtttccc tgctgctctt
    16321 ggaatgatat tgataggttt agctttctat agtactattg tcatctttgg tgctcctatt
    16381 gattatcagc ctgatttttc agcttttttc agttcgtctt attttcaaac aggattaata
    16441 ctggtatgtg tagggattac ttgtagttta ttcgtaggat atgggctcag tcaggtctct
    16501 tttcttctct atgattattt ggaaaacaat acctattctt caccatttaa actcttcagt
    16561 cagagctggc agttgatgaa ggggaataaa tggcgccgtt tcctcttgga tttatctttt
    16621 atcggctggt ttattggagt tcttttgacg tttgggtttt tgggacttta cgtatatcca
    16681 tactattgga cttgtcagac tatattttat gaagatttga aggccaagaa tccattgatg
    16741 ttttcaacat ataaatcagt tatctcttcc acagtagcct agggagtatg gagataacaa
    16801 attattagga atcccttcgt attttggagg gattttcctg tttttaagag atgttctgga
    16861 aaattaatgg ataaagtttt atactaatag taggatggta aagtagtccg atgttgatgg
    16921 aatatttgcg acgtgacttc ataaataagg agagaaaatt ggaggggaat tgtgatgatg
    16981 acgagtgata tagtatcaag agcgatgatg actcgcgagc ggacaagagg tacaacacta
    17041 ctatttttgc cctccatttt gctatctatt gtttatgctg taccagtaac aatttttcgc
    17101 ctactaacat ttctagagct ccgtcaaaac agtgctgttg tggaagggcg attggtttct
    17161 tcaatcaggt tgacttattt aggtgagtta ggcttcgctc tgctgttaca gctgttcatc
    17221 ggtctgtcct gttttcattt attggaattg ttgagagggg atagacagga gttttcttta
    17281 aaagatagtt tttcctttct aaagacagaa tggaagaagc ctatctgtac cacttttctt
    17341 tattattatt tgcttctttt tatggctgga cttccagcta atctaggggc tgctttattt
    17401 attaaaggct tcgcaatgag tagtttgatg gtcttatctc cgggagcaat ggcagagctg
    17461 gcagttcatc agcctagtca attaatgaag ataggggctc cgattttcct gctaggaatg
    17521 attatttacc tttttgtcta ctatacctac tcacaggttg tttttgtctt gtatgaccat
    17581 ttggataatg ctagttatac tggtcccctg gctgtattta gggaaagtcg tttcttgatg
    17641 aaagggaact attggcaacg tatttggtta gatttatcct ttttaggatg gtttatcggg
    17701 gaagtattta cccttcatct gttatctttt tttgtgactc cttactatca tttatccagg
    17761 accattttct acgaaaaatt gaaaaaacaa agactgtcag ctgtagagta gctaacagtc
    17821 ttttatggtt atagggagct tgttttgggc ttgaaataga gatcgtaaac caaccaggaa
    17881 atcattattc cttggacaag caagctgatg atggagccct ctaggccaaa ctttccacca
    17941 gatagccact caggaccagt gataccgatt tgaacaaagg cctgaccagc atcggtgccg
    18001 ctgactggga aagcaaaaac attcccttgg aaacagttcc acgcagcgtg taatccacca
    18061 atcacccaaa tgttgcctgt tttgagcata atgaggcagg caagaacggc aaatagggtt
    18121 aaatccaaaa ttggaatgag tgaaatagca ttgtttccga ggtggagaaa tgtgaagaag
    18181 agggaagaaa caatgatacc gataggaata ttgtgtttag ctgaaagtga tgagaacatc
    18241 catcctcttg ttagaatttc ttctgtcgta ccttggatag accaggcaag gataaggata
    18301 ataaattctc cgactaattt tgtagagaac tggatgcttg taaattcaat cgcgcctaat
    18361 ccccacatga tgagtgtaca agtggtcagc attgcagctc cgattcccca cccgagtaga
    18421 aaatcttttc ccgcaccttt tttagtaaaa ccaagtccta cccacgggct tttttcaata
    18481 taccgtgccc ataaaatgac catcaggctg ataaaagcga aagcgaatag ttcaaaactt
    18541 acagaaaggg tctcgctaaa tgggagtaaa aagcttattg gagtgaaaat aactgctcct
    18601 agtgaatctc ctactagcaa caaaataata gctacaatag gagaggtgat gatgttgaga
    18661 ttgaaagctg attgagcctt ctcattgata aattcggttt tcataggacc tccttttact
    18721 agatacttta ctagttcact attctatcat atttttccaa agaagactag acctaatttc
    18781 ctagtatatg gtagaatagt acaaagctat ataaggagaa tagtatatgg aattgaatca
    18841 atggctgaag tcctttcaac tgaaagataa tcgactagtg ggcccattct tttatggcac
    18901 acttcttgct cttagatttg aaatcgggcc tgcagacgaa gcagaagaat tatcaagagc
    18961 aatctatctt gaaagagcct atgcacgtgc agtagaactt tttgagcagg ctagttcaga
    19021 atacgactat gtgctccttt cgctccttcg acaggaagat agggatatag acacctacct
    19081 ctggcatttt tcatcgaaat ttaacttcga caaggtccct gagcctgagt tgatagaagt
    19141 ggaggattgg acgggagatg tgctagtctt tgagtgctat ctctttccag ttaccgacca
    19201 ggacctgaag gctttgttga gggagattgt caaagccgac catggaggtt ttcactacct
    19261 ttctgcttca gttatctttc tatctagcaa ggacaaggtt ctgtatcatt gctatgacga
    19321 taggggagtg gatatcgcgg tggtagatga tgacaaacga cgtcagcttt ttacggactg
    19381 tcatgacctg ctttttgact atgatatgga ggagatggtg aggaggatgg atttttaaaa
    19441 aaactaatat aaaaatgccc atgatatact acgtatacca tgggtttgac tttcagtcaa
    19501 accctaacaa caacagtcct atcacaaaat aagattagga aactgaatgg tgtgtttagt
    19561 ataataacgt gggttatttt ttcatcaaac gctccttttg tactaataca aatgtgttag
    19621 gaaaagctag gagatcttat ggcaaagttt gatattatta caatcgaaga caagattcag
    19681 cagttattgg aggatggttt tgaccaagct tcttttatct atgaattctt gtctttttat
    19741 gatatttcaa aaacagctat cacccgaatc cgtaaagaac aaagtggtga aatcaagaac
    19801 aaattgtatt acaagacggt tcctactgat aagtcggttg tggcaggtgt tgctgagatt
    19861 gaagaagcaa tcaaggataa aaaatcacaa ccccgttata tcattgtgac caactttgtg
    19921 gactttgcag ccaaggatac caagactttc gataccttac agatcccttt taaggatttg
    19981 ccgacctatg ccgatttctt cttggcttgg aatggtgtag agaaggtaga ttatgccaag
    20041 gaaaatcctg cggatattaa ggctgcggaa cggttcacac gtttgtatga tgaattaaag
    20101 aaaatcaatc actttgatga ccgtagtcaa gaggaaaaag agtttaacct gtttttgatt
    20161 cgcttacttt ttcttttatt tgccgaagat acagaaatca tgaaaaaagg tatttttacc
    20221 aatgccatca aaactcgctc gcgagaggac ggcagtgatc tgaatactct ttttaatcag
    20281 atatttgcca gtctggatat tgctaatcgt cttagccaag aaaactggtt acaggaattt
    20341 ccatatgtca atggaaaact ttttacagat gcatcaaccg atctagtttt tgataagaaa
    20401 acaagaaaat taatcttgga agcaggcgag ctcctcaact ggaatgaaat caatccggat
    20461 attttagggg ccatgattca gacagtggct agcagtgagc accgttcaag ctctggtatg
    20521 cactatactt cggttgaaaa catcatgaaa gtgattaaac cgctctttct tgatgaactg
    20581 actgcaaatt tccagactat tgtagataaa atcaatgaga acgaagacaa ggacataacc
    20641 gagcgaacca ggcgagagaa tagggcggct tacgaaaaag aattgtccac acttcacgaa
    20701 cacctatcca agataaaatt ctttgaccca gcctgtggct cagggaattt ccttatcatc
    20761 acctataaag agcttcgtcg tttggaaata agactattaa aagcactacg agaactacga
    20821 caagatggaa aaattgattt cttcgaaacg tcgaagatta gcttgaatca gttttatgga
    20881 attgaattag atgattttgc acatgaagta gctagattat ctctgtggat tgctgaatat
    20941 caaatgaatt tagaagcact aaatgaaatc aatttacaat ctgcctttct ccctctgcgt
    21001 gatgctggaa acatcactca aggaaatgcc ctgagacttg actgggataa agttgtccct
    21061 cataccccaa ccgatgaaat atacctgata ggaaatccgc cttatattgg ggcaaaaatt
    21121 gcaaaataaa gaacagaaag aagatttacg cctgacgatt ggtgaacaat tcaagtataa
    21181 gaaaatggac tacattgcag gctggttcta caaagggatt gatttcataa atacttcgaa
    21241 tagcaaactt gcttttgtaa caaccaactc tatttttcaa ggggaacaag ttgcttttat
    21301 ttggcaacct gtattatata aaatggagat agagtttgct tatacatcat tcaagtgggg
    21361 gaacagcgct gcaaataatg ctggggtaac tgttgctata gttggattgg caaataagaa
    21421 caatgcaagt taccaaaaat atatttttga tgaaaccttg gtacgtcaaa cggttactca
    21481 tatcaatccc tacttagcta gcggggaaga tatactggtt gagagtagta atagtccgat
    21541 taatagattg cctaaaatgg tgttcggtag tatgcctaga gatggcggtc atctgattat
    21601 ttctgactta aatgaaagga ataagatagt agaaggaaac cctgatcttg agccgtttat
    21661 taagagatat atcggcagtg aagagtatat caaagataaa ccacgatatg tgttttggct
    21721 gaataaagaa gaatatcaaa ctgttcagaa taactcattg ttaggtttaa ggattaaggg
    21781 tgtagcgcag gctaggatga gtagccctgc aaagtccact caagatgcag caaaaacacc
    21841 ttatgcattt gttcaaaaag gtgagtggga cgaagcttac tcgaccttca aacaatcagg
    21901 tgcagatgag tttgttcagc tcttggttcc tcgagtatca tctgaaagtc gtgactatgt
    21961 tcctatggga tttgttggag aagataccat catttctgat tctgccatgg ctgtctacaa
    22021 cgcccctgtc tatctgcttg gtcttctcat gtcacggctt cacatgacct ggttgcgggc
    22081 tatcggtggg aagttagaaa ctcgttatcg atactctgct ggtctggttt acaacacctt
    22141 ccctgtacca gagttatcca ctaagcgaaa aaatcagatt gaagaacaag tttttgaaat
    22201 ccttgactta cgggaagaat taggtggtac cttagcagag ctttatcatc gtgataccat
    22261 gccacaagca ctccgagaag cccatcaggt actagatagc attgttgaac gcgcctataa
    22321 ggaaacacca tttaccagcg atgaagaacg cctcagccac ctcttgaaac gctataagaa
    22381 aatgaaggag caatcatgag ccagcttttt gaagtgacct atggtcagaa gaaaaccagc
    22441 gtcaatacca atgaattggg catgcgtgag atgcaggcgc gtgtctgtga aaagagaaac
    22501 agcccctacc tcttggtcaa ggccccgcca gcatccggta agtctagggc actgatgttt
    22561 gtagccttgg ataagttgaa acgccagggc ttgaaaaaag ctatcgtagc cgtaccagaa
    22621 aagtccatcg gcaagtcttt tcgttcgacc aaactttcgg actttggcta ttactgggat
    22681 tggatagtca aagatgagaa caacttaacc acatcaggta ccgccaaaag caaggtagaa
    22741 aaatttatca actttatcca atctactgat gagacagatg atgtcttgat cgtaacccat
    22801 gccacgctcc gctttgcttc ggagcaactg gatgccagtg attttgatgc ttgtttgctt
    22861 gccattgacg agtttcatca tgtctcccag gatgataatt ctgtattggg caatgccctg
    22921 cgggaagtct tgcaaaaatc aacggcccat atctttgcca tgaccggttc ctatttccgt
    22981 ggagatagtg tacctatctt ggatcatgca gatgaggcac gttttgagcg tgtgacctat
    23041 acttactatg aacagttgga aggctatcaa tacctcaagt ccttcgtcat gaactacaag
    23101 ttttaccgtg gtcgctacac ggatgccttt ccagacttat tgcctgagtt tatcgacaag
    23161 aaaaccatta ttcatattcc caatgttaat tcaggtgagt cttcaaagga taagtatgga
    23221 gaggtggatg agattttaga ttgtctagga gattacctgc ataaagatga gcatgggatt
    23281 attcatcttc gttctaagac aggtaagatc ttgaagattg cggacttggt gactgaggac
    23341 ggtcgtgatt tagtcagcaa ttatctggcg aaaatggata gtgaagacga gctggatatg
    23401 attattgctc ttgggatggc taaggaaggt ttcgactggc catttgcaga atatgccctg
    23461 actatcggct accgctcttc gctgacagag attgtccaga ttatcggacg ggtcacgagg
    23521 gacagctcaa acaagaccaa agcccaattc accaatctaa ttgcagaacc agatgccgaa
    23581 gatgaggagg tccaattctc tgtaaataac atcatgaaag ctattactgc tagcttgttg
    23641 atggaaaatg ttttatctcc ttcattcaag tttaagcgta aggaaaatga cggccagaaa
    23701 gctaacggag ctgagatttt tatcaagggt ctagcaaagc catcaacgga acgtactcaa
    23761 aaaatcattg agcaagatat aactgactta aaagcctctg tcttgcaaga tgatgtggta
    23821 caggcagcta tttctgcagg tgcagagagc aaggtcatca ccaaacagtt gattccaaga
    23881 gtgattgcga ctcgttatcc agatttgaca cagacagagg ttgaagaggt tcgtcagcat
    23941 ttagtcgctg atttgacctt atccaatgct aagaaagaca gcgaaaataa taagctgtta
    24001 aaaatggcgg ataaatttat caatattgac gacttaagta tagatttgat tgatagtgtc
    24061 aatccatttc aaggtgctta tgaggttctg tccagggatg tagatagtcg taccttaagc
    24121 ctgattgcac gggtatttga tgcaaaaaaa gtagagttta caaccgacga attgcgcatg
    24181 ctttatcccc agattaaggc ttttcaggct gagcatggac attcaccaag acgaaattcc
    24241 tcagatttag aggaagaacg actttacttt gccttagcta agcttgatga actccgtcgt
    24301 gaaagggata atcaatgata gaaaattttg caaccttaga agatattttt gcggatgaag
    24361 cctttgaaag cttggttgct gggattcgtg ttgtcaaagt tgaaagatta gacccagaaa
    24421 tagagaaatt tatggaaatc tgtcaatggg ttaaggaaca tggacgagag ccgcaaagaa
    24481 gtactcaaat caaagaacga caattattca gtcgactgaa ggctattcgt gcagatgagg
    24541 ggagaagagc tcaagttagc gcctatgatg aattggattt gttaggagat agacatgatg
    24601 gatgacttag atgatatttt aaatgatgat tccttgtttg aaaatttcga aacagataga
    24661 actttattta gcactaaacg ctatcaggga acagttagag ctaggagtaa atctagtagt
    24721 cgtacacgtg ttcaaactgg ctttgacacc tatcggaaat tgtttacaca ggttcatgct
    24781 gatattgctt gtggtaaacg tcagataaaa tccatcgagg aaaccagtca aggaaaccgt
    24841 atcagtcgga aaaatccaat taaacaggga aatttctatg ttgataatgg tgttatgctg
    24901 tatgttgtca aaatttatga ccctcagacc aatgtggaag ttggccagtc tacagagcgt
    24961 aagtacaagg tgcatatcgt atatgaaaat ggaacggaga atcatgtttg gctcttgagt
    25021 ttgatttcat cactatatga taaaaaacgt tcgggtagat tggtaacaga acccttggac
    25081 acaatttcta tgctaggtga ggaagccgca aaatatcaca caacaggcta catttatgtt
    25141 gtcaaatacg ctggaacaga taatcgattt ttagaattgg ataacctcta caagataggg
    25201 gtagctacag acatcaaaaa acggctttca aatagccaaa acgaagcgac ttacctgtat
    25261 gctccagtcc atctggtagc cagttatgag atccagaatg tttccgcaag taagttagag
    25321 aaatttctac atgatgcatt tagtgataaa cgggttcaac tggagactgc ctcaccaact
    25381 ggcaaaaaag tttctgttac tgagtggttt gtggtagaat tagaacagat tgaacaaaaa
    25441 atttatgagc tttttaagca actaaatctc tgacatctta tcagctaaac cagtggagaa
    25501 atatattgtt cgtttctatt ttcacatttg cgatttgtta tctgctaggc attatcgcca
    25561 tagccatagc tttcacattc tttcgcagga agtagaagga cggacagatg gacaaacttg
    25621 ttatttggtt tttgatttta ctctgggctt caccagtgat tattgttgcc ttggcaggtg
    25681 gattcattat tttcagtctc ttatttggta gacggaaata atgtctttaa tcattgcaaa
    25741 ttcacacaac ctatcgtaaa atagtaatat atctaggata tacaggaagg ggttgctatg
    25801 ccttaccgta aattaacatc aagagatcgg tcttttatca aagggcagac ggaccgtttg
    25861 ctgaatcaga tgaatagcaa tgcggcctat ttggggacag ttcagaccta tgaagcagcc
    25921 aaggctaggg ccaaccaagc ctatctggca atggaactgg aagacgaccc agagaaaaag
    25981 gtgcgactgg caaaattggt tgaaaactat actgctcaag cccaggctat attggatgag
    26041 tgggaggaga aaaacagtcg tacagagaaa acgaccagaa atgtcaagtt gatcttgtgg
    26101 ctgaccgtac tgttcaccct tagctttgtc ttccccgtca atatcattct agccattctt
    26161 ttttccgttt ggttttatcg gaattacctt cgttcaagta gaactgacca agtgattaag
    26221 gctgctaata gccaatcttt gacagaagag gaaaggtttg aagactggtt gacagaaaag
    26281 attgtcgtcc tcaacaagga caagcgccag tggacagagg ggataatcgc aaaatatgac
    26341 agtttagatg aaattgcagc aggtatcggt gaaatggatg agatagataa agtagctggt
    26401 gagaagcttc ttcgacgcta tcaggacatt ttagcagata ttgaaaaact gccagattct
    26461 gaacagaaaa cctattattt ggattttcat caggaaatca ttgccgactt ggaagatcta
    26521 ttccaacaac tccattttgg ataagaaaaa ccggtaacag tacaaggctg ttgccggttt
    26581 tgttatgtga cttttagtcc gtcgcgctcc gtaaggtgcg cgacgaaggt tataccaaaa
    26641 aaactccaaa cgcgatacaa taaaggtgtt caagccaatt gtaaagcgag aggagaaaag
    26701 tatggcacaa aaggcacata gtttatcaca tataaagtgg ttgtgttcta ccacattgtc
    26761 ttcacaccta agtatagacg aaaaatcatc tataatcaat atcgaagtag tcttggagag
    26821 atatttcgac gtttgtgtag ttataaaggt gtagaaatta tcgaaggaca tctgatgccg
    26881 gatcatgttc atatgttagt cagtattcct ccgcgattaa gtgtatcaag ctttatgggc
    26941 tatttaaaag g
//
LOCUS       DASGCC010000011        25268 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.011, whole genome shotgun sequence.
ACCESSION   DASGCC010000011 DASGCC010000000
VERSION     DASGCC010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 25268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25268
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.011"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(162..470)
                     /locus_tag="U1404_000301"
     CDS             complement(162..470)
                     /locus_tag="U1404_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000420335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347287.1"
                     /translation="MELVMPNNYVVLEEEEMMYLDGGEIATATVLGIISAAVAAGGAA
                     YGAGLAAGTRVYYAGLRNSQYQKIKWQVRAAALVVGNVWGGIFMTGFKNAFYAKVTGK
                     "
     gene            complement(611..2014)
                     /locus_tag="U1404_000302"
     CDS             complement(611..2014)
                     /locus_tag="U1404_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001865356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEM5347288.1"
                     /translation="MKLYNKSELRYSRIFFDKRPPAYAFILIFSTLATLIIAFAVSAY
                     LPKNYIVKARGTSVITGTEYVSALSNGKIVTLHKKEGDSVKAGEVILSLSSGQEGLQT
                     ESLTKQLDKLKAKESLFQKYEQSLNEKVNYMANSGEEQEYYGKVEYYLSQLSSENYND
                     GSQYAKLQEEYTKLNKLVAEKSQLETDLSSYQSQLANLEAELATLSVQETAETNSDSE
                     TSSSSVDTSSNSIQLEQLNTKISEVKIKIETTTSSIQGKGTEIESLQSSIREMERSYN
                     DPTSQAYNTYAQLISELGTARAANNKSITELEANLGIATGQDRGLTVSASSDGTLHYV
                     TPLKQGMSVQQNQTVAEIAGSDREAYVEAFVLATDISRVTVGAEVDIAITGVNSQKFG
                     TLKGAVTQIDSGTITQETQNGNVSFYKVVVALEELTLKKDEEIVVLQKDMPVEARIVY
                     DNETYLDWILELLSFKQ"
     gene            complement(2011..2478)
                     /locus_tag="U1404_000303"
     CDS             complement(2011..2478)
                     /locus_tag="U1404_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5347289.1"
                     /translation="MSKLEVLENKKLVLKKVICKKLSSLQFEDLEQEIDKFYQHLQLL
                     KVQMFGPLIVKNSGTILHEDGTITVDYDLYVQAHDFRQYDKFYTVYEEIVCPHCVYVR
                     FEDSPEYLQYAYSKLDLHFYENDLETDGIIYTVYVNTNNETMTVDIFRPIISL"
     gene            complement(2471..4690)
                     /locus_tag="U1404_000304"
     CDS             complement(2471..4690)
                     /locus_tag="U1404_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HEM5347290.1"
                     /translation="MFKKYACTLQHDQSDCAAAVVSTVLLTYKKELSIMKIREIIGTD
                     MCGTTVHGIVSGLEKLNFTVKAVRVSLDDLSGDISFPAILQIRNSLGQNHFIVIHKIK
                     KDGNYLVADPAKGLDMLSITELEEVYQGIAIFMVPNSEFEKGNMKGKGLFNLFSALIL
                     TQKGLVGTIILASFLLSIVGILSSLFSKVIMDEIIPFGLKNSLYLFLIVFGIVSLVQS
                     LLSAFRQHILLFLSRKIDIPVLLGYYDHIIHLPYSFFGSRRVGDVLTRFQDAMTIKNV
                     FTSVSISLVMDISLSLISAFVLWHLNPTLFLILVMMVIVNIVLIYCFKKPYKKINNEQ
                     MEANSMLNSQLIESIRNIDTIKSQHDERQRLDKLEENFVHTLEIGYKEGVLQNIQSTI
                     SSIAGTLGNLIFMGVGALFIIDNKMTIGDLLVFQTLSQYFTEPVQNLVGLQLTFQEVQ
                     VAVSRLQELMDVEREDSQVGNSIHNFSLLEDIVFKNVSFAYGSRPPIIRDFSLTIKQG
                     EKIAFVGESGAGKSTLVRLLLHFIQPIEGQIKFGEYDLGDLDYGELRKRIAYIPQTVE
                     LFSGTIIDNLKIGNPEASYEDMIRVCRIVGIHDTIQKLQNRYGSFVEEGGQNFSGGEK
                     QRLAIARALLSKADLYIFDEATSNLDSFSEQIIQNLIFEKIIGKTTIVVAHRLSTILR
                     CDKICFLEDGKIVEYGTHDELMKLGGRYATMVGLQSIQLDKQEKTVATSWSEEVVYE"
     gene            complement(4963..5832)
                     /locus_tag="U1404_000305"
     CDS             complement(4963..5832)
                     /locus_tag="U1404_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5347291.1"
                     /translation="MKVLLATRLKNRRKELGWSQKELAEGVCDQGQISRIEKGTYMPG
                     ADLLHALAKKLQVRMDYFFDEEESEIVSDLKHFRKLAKNCLIQRDYEALGFLYEREKG
                     SLFHLTFPDQVYLEWVEAVLAANLEARREDAIQKLRELLERVGENRRGYLYLYNSLLI
                     LLIRDEKNAEAEQFYNEVIEKIDKNKLDLLVDIDAYFSIQSNYTRYLWLTNQLEKGIE
                     LVTACIEEFKSIYPIHFLADFYCDLGNVTEDFADKKLVKERYELSRLLYELAGIDAIA
                     LKIEKYLKETYTD"
     gene            complement(5927..6739)
                     /gene="purR"
                     /locus_tag="U1404_000306"
     CDS             complement(5927..6739)
                     /gene="purR"
                     /locus_tag="U1404_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HEM5347292.1"
                     /translation="MKLRRSERMVVISNYLINHPYELTSLNTFAEKYESAKSSISEDI
                     AIIKKAFEESSIGHIETITGASGGVVFTPSISEAESVEIAQALRDQMAESNRILPGGY
                     IYSSDLLSTPHILKNVGRIIADAFKDEKIDAVMTVATKGVPLANAVANVLNVPFVIVR
                     RDLKITEGSTVSVNYVSGSSDRIEKMFLSKRSLKAGSRVLIVDDFLKNGGTINGMISL
                     LSEFDSTLVGVAVFAENQKGDRSVANYKSLLAVTDINVKENRVDVELGNIFE"
     gene            complement(6841..7707)
                     /locus_tag="U1404_000307"
     CDS             complement(6841..7707)
                     /locus_tag="U1404_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEM5347293.1"
                     /translation="MAVRIVSRQPLTKGWSTDQKYKVQLEDGRLGLLRIAERPAYEAK
                     RLEFQLVENLFGLGLPVAEPLSFWADDLSVYTLYEWVEGQDMNEVATSLSDSVLYDLG
                     CQSGKFLRTLHALPIDQSQRDWNSFYQVKIDNKLAAYQAASHSYPTGPAMIDFVQANR
                     HLLEGRPIAYHHGDFHTGNFLLGPDGKLKILDFDRYDIGDPWEEFNRLIFTADLSPAF
                     ARGQVDAYFDGAIPEEFWKLMALYVTVNCLAALSWAEQVDSEQIPMMKLQAQKISEWY
                     EYFNHHLPKWYM"
     gene            complement(7707..8648)
                     /locus_tag="U1404_000308"
     CDS             complement(7707..8648)
                     /locus_tag="U1404_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM family protein"
                     /protein_id="HEM5347294.1"
                     /translation="MKINQMKKDEFFEGFYLIKTADVRQTRAGKDYLALTFQDDTGEI
                     EGKVWDAQPGKIKDFTAGTVVHMQGRREVYNNTPQVNQLVLRLPKAGEPNDPADFKEK
                     PPVDVKDTKDYLSQMIFRIENATWQRIVRALYSKYDKEFYSYPAAKTNHHAFYSGLSF
                     HTATMVRLADKIGDIYPQLNKSLLFAGIMLHDLAKVIELTGPDNTGYTVRGNLIGHIS
                     LIDEEITKVLMELGIDDSLEEVTVLRHVILSHHGLLEYGSPVRPQIMEAEILHMIDNI
                     DAEMMMMLSALDKVGPGEMTNRIFAMDNRAFYKPNID"
     gene            complement(8638..9876)
                     /gene="rmuC"
                     /locus_tag="U1404_000309"
     CDS             complement(8638..9876)
                     /gene="rmuC"
                     /locus_tag="U1404_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEM5347295.1"
                     /translation="MDIVLLILLILVLLALVFLYGKWQSLALLLQDQAEDTADNLSDQ
                     LSYQLENATLKQQQAIHQEVERLRTELYQQLTDIRQELNKSHLETRDATDRRLQAIQE
                     SNEKRLEEMRQTVEEKLEKTLQTRLQASFETVSKQLESVNRGLGEMQTVARDVGSLNK
                     VLSGTKTRGIMGELQLGQIIEDILTPSQYEREFATVSGSSERVEYAVKLPGRTEGDYI
                     YLPIDSKFPLADYYRLEDAYESGDRDQIDLHRKNLLAAIKRFAKDIQSKYLNPPETTN
                     FGVLFLPTEGLYSEVVRNPIFFDELRRQENIVVAGPTTLSALLNSLSVGFKTLNIQRS
                     ADDISKVLGNVKLEFGKFSDLLLKAQKQLNQASSNIDKLLTTRTNAIERSLRTIDLYE
                     DDQTKGLLGLSPLDEEDNEN"
     gene            complement(9877..10509)
                     /locus_tag="U1404_000310"
     CDS             complement(9877..10509)
                     /locus_tag="U1404_000310"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HEM5347296.1"
                     /translation="MIKIALIAGGSFDCLPEPADLYVGVDAGSLRLLEHSLPLDWAIG
                     DFDSVTSEELGRIKDQAERFLQAPAEKDDTDLELALKEIFKAYPQAQVRIYAALGGRM
                     DHMMANLFLPAEPDLAVYMEQIELMDCQNIIRFRPAGSHRISSIAGMKYISFMPSDQS
                     RLTIRHAKYSLDASNYFFKKCYASNEFIDRDIVIQLDQGYVVLIYSKDKD"
     gene            complement(10502..11161)
                     /locus_tag="U1404_000311"
     CDS             complement(10502..11161)
                     /locus_tag="U1404_000311"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM5347297.1"
                     /translation="MSHYKIAPSILAADYANFEKELKRLEKTGVEYVHIDVMDGHFVP
                     NISFGADVVAAMRPHSKLVFDCHLMVSNPENHIETFARAGADILTIHAEATVHLQGTL
                     QKIRAAGMKVGVVINPGTPLVTIEPVLNLVDQVLLMTVNPGFGGQAYIPEVAEKIEAL
                     VKLREARGLNFDIEVDGGIDDKTIHSAKNAGANVFVAGSYLFKGDLDANVAKLRAALN
                     D"
     gene            complement(11176..12051)
                     /gene="rsgA"
                     /locus_tag="U1404_000312"
     CDS             complement(11176..12051)
                     /gene="rsgA"
                     /locus_tag="U1404_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM5347298.1"
                     /translation="MQGRIIKALAGFYYVEADGQIYQTRARGNFRKKGQTPYVGDFVD
                     FSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNANLLDRFLVLLEQK
                     DMDPIIYISKMDLVEERAEMDAFKAIYEKIGYPFVYSLEELTPLLQDKVTVFMGQTGV
                     GKSTLLNRIAPELALETGAISDSLGRGRHTTRAVSFYNVFGGKIADTPGFSSLDYEVK
                     EAEALTDCFPEIAEASQNCKFRTCTHTHEPDCAVKEAVASSAISQSRFDNYLQFLSEI
                     QNQRETYAKVSKKFK"
     gene            12176..12257
                     /locus_tag="U1404_000313"
     tRNA            12176..12257
                     /locus_tag="U1404_000313"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12209..12211,aa:Leu,seq:cag)
     gene            complement(12308..13900)
                     /locus_tag="U1404_000314"
     CDS             complement(12308..13900)
                     /locus_tag="U1404_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347299.1"
                     /translation="MKKIIYQLRSVIAIQLVFHILYSLTNVVLPELNKYLFDYIFQMG
                     WTGLVWLLLAYALTIIANSVFQYISQVYEWKVSQVFYVTAKKGLANSLLSQPLAKFSE
                     KNVSAYLSIFDNDLETIEESYLSPLMDIIRSSLSMFIYAVSLFLFVHPLVAVGIILSS
                     ALAVFIPKWISGPLSQRQRAFLQSLESYFQVVTDLFSAKNRVNPETFSSISRVHHRSV
                     EESEQARFRFGQFKTLANVVNGFSMFLVQLTAFGLVGYLLLQKELTVGAAIATFSYVE
                     NFIYPMKYILLDVNSIHSTKETVANLEGYLAGQVLSEQVPSYPNVTALEVREVAYHVG
                     ELAVADFSYRFDKGKKYAIIGPSASGKSTFLRVLAGELALDKGSVSYLENDVLHEMEA
                     ATAFYLSQFEHLYHTDFENNVSVFGTYEKGRDVMLGLLRRLPASLQDTSMTASNPSLL
                     SGGEKNVLCLLRALMSGKEILLLDEPTAHLDPALTKQVLTNLLQLEDKLIITILHESD
                     SAILDMFDVVLEMRDGKLSEKI"
     gene            complement(13935..15512)
                     /locus_tag="U1404_000315"
     CDS             complement(13935..15512)
                     /locus_tag="U1404_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347300.1"
                     /translation="MKKRNFWLTLSCIFAVALLNVGFLYQYRFIIDAIAVGDRQAFVS
                     YFVLMVLSVLVMLVFEYIRQIANVSYLNQVGFQLQATFIGKIFDLPFRQFVEQGAGAY
                     ISQLNNDLETVKEDYYDAFFTIFQGACTFGIASLALLSLDGLTAIFLILISFLPVVIP
                     YLFKKRRRLNQEAISDSQQVYNTRVSDTFLSYLQVKNSRQRQQVLDGLNDRYQAVNDK
                     VNQANRTTVTMRLLVGFVFYLTTLSIIFIGGFQVLSGALTIGGLTAILTISEQLVDPI
                     NSIAAAFLDRHAVKELKQEFELSTLGQETKGQELASAFQSIQLVKASYAIGEKQVFED
                     LTVAFERGKKYLILGESGSGKSSLALILTKNSQLQAGDIYVDKTSLSDLSYQAIQDKI
                     AYLPQEGALFHDTVLYNLTMGREVPDDRLMFLIKTMNLDSRFPSYASLSEEISDDSGL
                     SGGQKQRLLLIRALLQDKDILLLDESLSALDQETYAVIENYLTSLADKTLIHISHRVS
                     DDVLSRYDGVVPIGESN"
     gene            complement(15616..16482)
                     /locus_tag="U1404_000316"
     CDS             complement(15616..16482)
                     /locus_tag="U1404_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5347301.1"
                     /translation="MNRFGRTLKLIREGKGKSLAEVAKGHISTSQLSRFENGESDITV
                     SKLFGVLAEMNVDVDEFVYASQDFKKDELTRILEQLKQSIYIRDVVTIKKILSEQLAK
                     AERDSRREFHRLNAILIAYKLSDLDKTVVVSKEDTAFLTDYLFQVDNWSYYELLLFAN
                     TMDELEHQTMMLFCRELIGRTQFYREMKLHRLAISQILLSAYLVSVQHKELADAIFLE
                     KTIKGLFFDETEIFERILFKFGKAFYDYRKTGSANAILEMRKCIRLLRAVDSQNIADW
                     YETILEKIVNEK"
     gene            complement(16609..19053)
                     /locus_tag="U1404_000317"
     CDS             complement(16609..19053)
                     /locus_tag="U1404_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEM5347302.1"
                     /translation="MKQINPKASKQFILVMIITVLLAMGRALLLSGVSFPLWFIPLPL
                     LAYSIFTFYVLVLLDTYEKFVKTKTFAKYVGYFLGFLYLVNLVYRLNAKKYQPWNIFR
                     NNLFQFELLLMLLLPVLLAFLWRKKTGIREKLSQWSANHLVPDGYLLLTSLLSLSPLA
                     ISYWKDSHYESLVEKGSYIEFFSQTPLFAPIHFIGTYIFLRYLHKAFVEFKANRTNVH
                     SMLFISLALATLSHIGYQASMAGATGSYFTRHLFPGAIVFQIACLFFLNVIISLVINL
                     QILSVAVIASLNVILVTANFLKFRYRSEPLTPNDFKWVGNLGMILSFISLRVVLVSLV
                     FIVLLVFIYRRIHKKYFQGRIVASIWKRLAGISVIVSLILGMGWAIRNEKDHKIAGWI
                     PILSQVNNWRNVDWKGYAFVARYRTLSFLWLQQLSKTSMEMPENYSEKTMKAIVNKYT
                     ALAEEINAERTGQLTDQTVIYILSESLADPRRIPGVTLSQNVLPNIEYIMSQTTSGLM
                     KSDHYGGGTANIEFQVYSGLPFYNYSSSISSVYLDVAPNMKKLPSISDLYPADNRIAI
                     HPYYDTSYNRNSIYKQLGIEQFYTLNSAKYPLTVTAEDYQGNFVSDKKTYDLILDQVR
                     SADTSFVSAITMQNHVQWNSLEPAGITASGEGFTAEENENLTSYVRLLSFTDQATRDF
                     LDQLKTLDKKVTVVFYGDHLPGLYPESAFVTDPSAQYKTDYFVWSNFETEDYHYDLVN
                     SSDMNALMLETTNNKVSPYYALLTEVLHKDRVGQAERDAKVAEELKLVQYDLSTGKGY
                     LLKYKDFFKVATETTE"
     gene            complement(19066..20796)
                     /locus_tag="U1404_000318"
     CDS             complement(19066..20796)
                     /locus_tag="U1404_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347303.1"
                     /translation="MLKTMLKKHPHLVALGLFVGFSLLLLVPHLLTKGMVTGADLIFH
                     YNRFYDAAMQMKEGNFSYIISLYGYQQSGRIVNALYGPYFAYLQGALVLLSGTWFRYQ
                     ILTNLLLGTLSATSLYLLMREVKVKYAHSILLSLFFVTTYSIQYWWATQGFTSWGVAL
                     FPLCLIPAVRFLQTKKVPIFLMAGAVGLMLQVHMLSTLFLVIAYGVLFLIGWWKSDQK
                     MKIIGQVALSVGIFLLLTINIWLPLIYINATNTLVPPFVNKKFVLNTVTWLKTAFLYY
                     PYPLPIFFGIYLYFLVKNWKKQSLVLAGLALTYAVFLILSTNLFPWQLFAGKGITLVE
                     LIQFPFRFFLYANVLLLAVVGVQVSGVSDKIQKIFSGLTVISLLVSVGFLWNQSYKEI
                     NGHYYSDTFLQKRIHTTLYGTTEELRASFYSKDLGEFIHIAQKSTPDYVPDLSDSTGH
                     ITNEESDNTYFTYRDQVILPNQEFIKEVDGDQLVVTWTASEAEETALPIIVYQDSQLV
                     LNDQVLDREEMELSTIGVPTVTSKKGQNTLVLSYKQQWWLLPVIFISLTGWLVWLIYY
                     IFAYRKSNLS"
     gene            complement(20999..21907)
                     /gene="rsmA"
                     /locus_tag="U1404_000319"
     CDS             complement(20999..21907)
                     /gene="rsmA"
                     /locus_tag="U1404_000319"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEM5347304.1"
                     /translation="MKWRNKKQERTHMRIADKNVTRAVLERHGFTFKKSFGQNFLTDT
                     NILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLGR
                     FDNVTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLPYYITTPILMHLIESKIPFSEF
                     VVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM
                     VRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNHFGKSEEVKDKLTQALGMAEL
                     EASVRGEALSMADFARLSDSLQEVGL"
     gene            complement(21891..22421)
                     /locus_tag="U1404_000320"
     CDS             complement(21891..22421)
                     /locus_tag="U1404_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEM5347305.1"
                     /translation="MKKVVLLRGVTPVGKNKIPKMSHLAEILTEVGLTSVQTYIQSGN
                     VVCETDILDEELSRLIHQTIKEKIGAELAIIVKHQMELTQAVAENSFGEGYDPFRVHL
                     VFTNDEINGEKLNKLLHQDFGDEELRLGSQCLYMYLPRDARKKKLNTNYLEKQLDITA
                     TMRKLSVISRLSEMAK"
     gene            complement(22435..22692)
                     /locus_tag="U1404_000321"
     CDS             complement(22435..22692)
                     /locus_tag="U1404_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HEM5347306.1"
                     /translation="MGIHFTEDAWEDYLYWQGQDKKTLKRINKIIKDMQRHPFEGIAK
                     PEPLKYDYQGAWSRRIDAENRLIYMVEVDKLYILSLKDHYG"
     gene            complement(22694..22954)
                     /locus_tag="U1404_000322"
     CDS             complement(22694..22954)
                     /locus_tag="U1404_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEM5347307.1"
                     /translation="MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKS
                     EWDSLQETLAVARNTYLSQKVLRGMAKVKTGQTQERNLIEAD"
     gene            complement(23030..23485)
                     /locus_tag="U1404_000323"
     CDS             complement(23030..23485)
                     /locus_tag="U1404_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5347308.1"
                     /translation="MSRREQVVLTNMCMITDGQRVLVQDRKSEKWPGVTFPGGHVEPN
                     ESIISSVIREVKEETGLTVSNLELCGIQNWTDPTDHYRYLVFCYKTSHFSGSIQSSDE
                     GEVFWINRADLKNVQLADGFEPMLEIFEQPQLTENFCWFEDGEWKVENR"
     gene            complement(23489..23857)
                     /locus_tag="U1404_000324"
     CDS             complement(23489..23857)
                     /locus_tag="U1404_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347309.1"
                     /translation="MDRVYAVKCLVKNEFEPSYENYSSYEEVTYLLPADVLVWEDEQV
                     DKNKLADYLRGLVEDGYVNADGIWKQSRLFHIAGVQEMDDRVEFDGLAVEVYRWFYNF
                     EHPVTEEEFLNLYYFDDLGR"
     gene            complement(23850..24440)
                     /gene="rnmV"
                     /locus_tag="U1404_000325"
     CDS             complement(23850..24440)
                     /gene="rnmV"
                     /locus_tag="U1404_000325"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HEM5347310.1"
                     /translation="MQGACSELTQKIKIQEVLVVEGKDDTANLKRFYEVDTYETRGSA
                     ISDDDLERIEKLHDLRGVIVFTDPDYNGERIRKMIMQAIPTVKHAFLQRDEATPKSKT
                     KGRSLGIEHASFADLEKALAGVRGYYDDEHNFDITKSDLMRLGLLMGGDSRKRREYLG
                     EKLRIGYCNGKQLLKRLELFGISLAEVEEAMGSYHG"
     gene            complement(24403..25185)
                     /locus_tag="U1404_000326"
     CDS             complement(24403..25185)
                     /locus_tag="U1404_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM5347311.1"
                     /translation="MIQIFDTHTHLNVEQFDGRVQEELDFAKEMGVTLHNVVGFDRAT
                     IDKAMELADQHPEIYLTLGWHPTEAGTYDEEVENYLLKALQHPKVIALGEIGLDYYWM
                     TADKEIQARVFKRQMELAKQLDLPFVVHTRDALEDTYQIIKEVGVGPRGGIMHSFSGT
                     LEEAQAFMDLGMHISFSGVVTFKKAVELQEAAQALPLEKILVETDAPYLAPVPKRGRE
                     NRTGYTRYVVDMLAQLRNQSVEEVARATYENARSLFRIDSEN"
BASE COUNT         7394 a         5840 c         4880 g         7154 t
ORIGIN      
        1 aagtaataag aaattagcat acaaatttgt gctaatgtaa caataagtgc aacccccgat
       61 aactgattaa actcattttg cgaaaaatat attgtaccgc ataacaaaag aacaatactg
      121 ccttctatga ataagaacaa aggtaaatat ttcataaatg attacttccc agttactttt
      181 gcatagaaag catttttaaa tccggtcata aaaatacctc cccaaacatt tccaacaact
      241 agtgccgccg cccgaacttg ccatttgatt ttttgatatt gcgaatttct taaccctgca
      301 tagtatactc tagtacctgc agctaagcca gctccataag ctgctccacc cgcagctacg
      361 gcagctgata ttatccctaa tacagtagct gtggctattt cacccccatc aaggtacatc
      421 atttcttctt cttcaagaac tacataatta ttcggcatta ctaattccat aaaaattctc
      481 ctttaaaaaa tcatagttag acacaatcct ctaactggat ataatcaacg tttctcattc
      541 tttacctaga tagcagaagg acctttcatc catactgttt ggatttatct actgtaaaga
      601 tataaaacca ctattgttta aaactcaaca attctagaat ccaatccaaa taggtttcat
      661 tatcataaac gatacgagcc tccactggca tatctttttg taaaactaca atttcttcat
      721 ctttttttag agtcaattct tcaagagcaa caactacttt gtaaaaacta acattaccat
      781 tctgagtttc ctgagtaatc gttccagagt caatctgagt tacagcaccc tttaaggtac
      841 caaatttctg actgtttaca cctgtgatag ctatatctac ctctgcaccg actgttacac
      901 gggaaatatc tgtcgcaaga acaaaggctt ctacataggc ttctctatca ctaccagcaa
      961 tttcagcgac agtctgattt tgttggacag acatgccttg cttgagcgga gtaacataat
     1021 gtagagttcc gtcactggag gcagaaacag ttagccctct atcctgacct gtggcaatcc
     1081 ctaaattagc ttctaactct gttatgcttt tattattggc cgcccttgct gttcctaact
     1141 cactgattaa ctgggcataa gtgttgtaag cttgagaagt aggatcattg taagaacgct
     1201 ccatctccct aatactagac tgtagggact ctatttccgt cccctttcct tgtatagaag
     1261 aagtagtcgt ttcaattttt attttgacct ctgatatttt tgtatttagc tgctccaact
     1321 gaatgctatt agaagaagtg tcaacggatg atgaactggt ctcactatcg gaattcgttt
     1381 ctgctgtctc ttgaacagaa agagttgcca attctgcctc taaattagca agttgcgatt
     1441 ggtaactaga caagtccgtt tctaattgac ttttctccgc cactaattta ttcaacttag
     1501 tgtactcttc ctgcaactta gcatattgac taccatcatt atagttttct gagctaagtt
     1561 gagatagata atattctacc ttcccgtaat actcctgctc ttcacctgaa tttgccatat
     1621 aattaacttt ttcattcaga gactgttcat acttttgaaa gagactctct ttagctttga
     1681 gcttgtccaa ttgtttagtt aaagattcag tctgaagtcc ttcttgtcca ctagatagag
     1741 aaagaataac ctcaccagct tttacactat ccccttcctt tttatgaagt gtcacaatct
     1801 tcccattgct cagagcagat acatactctg ttcctgttat cacggaagtc cccctagctt
     1861 tgactatgta atttttaggc aaataggcag atactgcaaa agctataatc aaagtagcta
     1921 gtgtactaaa gattaggata aacgcgtagg ctggaggacg cttatcgaag aagattctag
     1981 aataacgaag ttcagatttg ttatatagtt tcataagcta ataatcggtc taaaaatatc
     2041 caccgtcatg gtttcattat ttgtattgac atagacggtg taaataatgc catctgtttc
     2101 caaatcattt tcatagaaat gtaaatctag tttagaatat gcatattgca aatactctgg
     2161 actatcttca aatcgtacat agacacaatg tggacaaaca atttcttcat aaacagtata
     2221 aaacttatca tactggcgaa aatcatgagc ttggacatac aaatcatagt ctacagtaat
     2281 agtcccatct tcatgaagaa tagttccact attttttaca atcaaagggc caaacatttg
     2341 cactttcagt aattgtaagt gctgataaaa cttatctatt tcttgttcca agtcttcaaa
     2401 ctgaaggcta cttagcttct tacaaatcac ttttttcaaa actaattttt tgttttctaa
     2461 tacttctaac ttactcatat actacctctt ctgaccagct agtagcaact gttttttctt
     2521 gcttatctag ttggatgctt tgtaagccaa ccattgttgc atagcggcca cccaacttca
     2581 tcaattcatc atgcgtccca tattctacaa ttttcccgtc ttccaaaaaa cagattttat
     2641 cacaacgtag aatcgttgat aatctgtggg ccactacaat agtcgtcttg ccaataattt
     2701 tttcaaatat taaattttgg ataatctgtt cactaaagga atctagattg gaagttgctt
     2761 catcaaaaat ataaagatct gctttactaa gaagagctcg ggcaatagca agacgttgtt
     2821 tttctcctcc tgagaaattc tgaccacctt cttcaacaaa agaaccatat cggttttgta
     2881 atttttgaat cgtgtcatga atccctacta tgcggcatac acgtatcata tcctcatagc
     2941 tagcttctgg atttcctatc tttaaattat caattatagt ccctgaaaag agctcgactg
     3001 tttgagggat ataagctatt cttttccgta attctccata atctaaatcc cctaagtcat
     3061 actcaccaaa ctttatttga ccttcaatag gctgaatgaa atgaagaaga agtcgtacaa
     3121 gagtactctt tcccgcgcca ctttcaccta caaaagctat tttttcacct tgtttgattg
     3181 tcaaactaaa atctcgaata ataggcggtc tagatccata agcgaaagaa acgtttttga
     3241 agacaatatc ttccaataac gaaaaattat ggatactatt ccctacttga ctatcttcac
     3301 gctcaacatc catcaattct tgaagtctgc taacagcaac ctgaacttcc tggaaagtaa
     3361 gttggagacc aaccaaattc tgaacaggct cagtaaaata ctgactcaag gtctgaaaaa
     3421 caagaagatc accaattgtc atcttgttat caataataaa taaggcaccc actcccataa
     3481 aaatcaaatt ccctagagtt ccagctatag aagaaatcgt agattgaata ttttgtaaaa
     3541 caccttcttt atagccaatt tctaaggtgt gaacaaaatt ctcttctagt ttatccaaac
     3601 gttgtcgttc atcatgctgt gattttatgg tatctatgtt acgaatagat tctatcaatt
     3661 gcgaattaag catagagttt gcttccatct gctcattatt aatcttctta taaggtttct
     3721 tgaagcaata aattaacacg atattcacaa tcaccatcat aaccaatatt agaaataaag
     3781 tgggattgag gtgccataaa acaaaggcac ttatcagtga taggctaata tccataacta
     3841 acgaaataga aaccgaggta aaaacattct ttatcgtcat ggcatcttga aaccgtgtca
     3901 agacatcacc cacccttctg ctaccgaaaa aactataagg taggtgaata atatggtcat
     3961 aatagcccag gagcacagga atatcaattt ttcttgatag gaagagcaaa atatgttgcc
     4021 taaaagcaga taagagactc tgcactaaag aaacgatgcc aaaaacaatc aagaataagt
     4081 ataagctgtt ctttaatcca aagggaataa tctcatccat aataactttt gaaaagagac
     4141 tagacaaaat accaacgata cttagcaaga atgatgctaa gatgattgtc cccacaagtc
     4201 ctttctgtgt taatatcaga gctgaaaata agttaaatag tcctttgcct ttcatgtttc
     4261 ctttttcaaa ctcgctattt ggaaccatga aaatggctat tccttgataa acttcctcaa
     4321 gttctgtaat tgaaagcata tccagtcctt ttgctggatc agctaccaaa taattaccat
     4381 ctttctttat cttatgaatc actataaaat gattctgccc cagactattc cgtatttgta
     4441 gtatagctgg aaagctaata tctccactta agtcatccaa ggatactcga actgccttta
     4501 cggtaaaatt taacttttca agaccagaaa caattccgtg aacggtcgtt ccacacatat
     4561 ctgttccaat aatttcccga attttcatta ttgaaagttc ttttttatag gtcaataata
     4621 cagtggagac aacagctgct gcacaatctg actggtcatg ttgcaaagtg caagcatatt
     4681 ttttaaacat atatactccg ccctaactat tttgtataga taaatatttc ttctctatct
     4741 acaccaaaaa ctctcggcaa ttgtggaact ctaattaaaa taaccgctag taatcccacc
     4801 accaaaacac tcttaactat tcttttcatt ttgtaacccc tttcttttct acagtataac
     4861 cgtttcgtta cccattgtca atgttttttg atattttttc taataaaatt tattattgtt
     4921 atatttttga tataaaaaga agcctgcccc tctagagcaa gctcaatctg tataggtttc
     4981 tttgaggtat ttttctattt tcaaagcaat agcatcaata cctgctaact cgtaaagaag
     5041 gcgtgatagt tcatagcgtt ctttgaccaa tttcttatcc gcaaagtctt ctgtcacatt
     5101 tcctaagtca caataaaaat ctgccaagaa atgaatagga tagattgact tgaattcctc
     5161 aatgcaggct gtaaccagct caattccctt ttccaactga tttgtcaacc ataggtagcg
     5221 ggtgtagtta gactgaatac tgaagtaagc atctatatct accaataaat ccaacttatt
     5281 tttatcaatc ttttcgatta cctcattata gaattgctct gcctcagcat tcttctcatc
     5341 tcgaatcaat agaatcaata aactattgta gagatagagg tagcctctcc tattctcccc
     5401 gactcgttcc agcaactccc tcaatttctg aatagcatct tctcgccttg cttccaaatt
     5461 cgctgctaaa acagcctcca cccattccaa atatacttgg tctggaaagg tcagatgaaa
     5521 tagggagcct ttttccctct catacagaaa tcccaaagcc tcataatctc tttggataag
     5581 acagtttttg gcaagttttc taaagtgttt caggtcagag acaatttcgc tttcctcttc
     5641 atcaaaaaaa tagtccattc tgacttggag ttttttagca agggcatgaa gtaagtctgc
     5701 accaggcatg taggttccct tctcaatgcg gctaatctgc ccttgatcac agactccttc
     5761 cgccaactcc ttctgcgacc agcccaattc ttttcttcta ttttttaacc ttgttgctag
     5821 taaaactttc atatcaacct ctcagaatcc aatctatatt tattataaca ggttaagacc
     5881 tagcagacaa acaccaaaaa acctctcatc aagagaggct tagaggttac tcaaaaatat
     5941 ttcccaactc aacatccacg cgattttcct tgacattgat gtcggtcaca gcgagcagag
     6001 acttgtagtt agctacgcta cggtcccctt tttggttttc tgcaaagaca gccacgccta
     6061 ccaaggttga gtcaaactca gacaagaggc taatcatacc attgatggtg ccaccatttt
     6121 tcaagaagtc atcgacgatt aagacacggc ttcctgcctt caaactacgc ttagacagga
     6181 acatcttttc gatacggtcg ctagatcctg acacatagtt gacagaaacg gttgaacctt
     6241 ctgtgatttt caaatcacga cgcacaatca caaacggtac attaaggaca ttggcaacag
     6301 cattggccaa agggaccccc ttagtcgcaa ctgtcatgac cgcatcaatc ttctcatctt
     6361 tgaaagcatc tgcaatgata cgaccgacat ttttcaaaat atgtggtgta gacagcaagt
     6421 cagatgaata gatataaccg cctggcaaga tacgattact ttcggccatc tgatcacgaa
     6481 gggcctgtgc aatttcgaca gactctgcct cagagattga tggagtaaaa acaactcctc
     6541 cactggcacc agtaatggtt tcaatatgcc cgatagagct ttcctcaaaa gcctttttaa
     6601 tgatggcaat atcctctgag atagatgact tggcagattc atacttttcc gcaaaggtat
     6661 tcaaactagt taattcataa gggtggttga tgaggtaatt ggaaatgaca accatacgct
     6721 cacttcttct taatttcata aaatcatcct ctttcacttt tttatattat atcacaacaa
     6781 actacaaaaa gcgaactttt ttgattaaaa agtccgtctt tttcgtattt tgtttatcgc
     6841 ttacatatac cactttggaa gatgatgatt aaaatattca taccattcag aaatcttctg
     6901 cgcttgcaac ttcatcattg gaatttgttc ggaatctact tgttctgccc aagaaagagc
     6961 ggctagacaa tttactgtta cataaagagc catgagtttc caaaattcct ctggaatagc
     7021 gccgtcaaaa taggcatcta cctgaccacg cgcaaaggct ggagacaaat ctgccgtgaa
     7081 aatcaaacgg ttgaattctt cccaggggtc tcctatgtcg tagcgatcaa agtctaatat
     7141 tttcagtttc ccatccggac ccagtaggaa gttacctgtg tgaaaatctc catgatggta
     7201 agcaatcggt ctcccttcaa gcaagtgacg attggcctga acaaagtcta tcatagctgg
     7261 accagttggg taggaatgac tagctgcttg gtaggcagct aatttattgt caatcttaac
     7321 ctgataaaaa ctgttccagt cccgttgact ttggtcaatt ggtagggcat gcaaggttcg
     7381 caaaaacttc cctgactgac agcccaaatc atataagaca gaatcagaca agctagtagc
     7441 cacttcattc atatcctgac cttctaccca ttcataaagg gtgtagactg acaagtcatc
     7501 cgcccaaaaa cttagtggct ctgccacagg caaacctaga ccaaacaggt tttcaactaa
     7561 ctgaaactct aatcgcttag cctcataggc tggtcgctct gctattctca acagaccaag
     7621 gcgaccatct tctagctgga ccttatactt ttggtccgtg gaccagcctt tggtgagggg
     7681 ctgtcgagac actatcctaa ctgccatcag tcgatgttgg gcttatagaa ggcgcggtta
     7741 tccatggcaa agatgcggtt ggtcatctcg cctgggccga ccttgtccaa ggccgatagc
     7801 atcatcatca tttccgcatc gatgttgtca atcatgtgga ggatttctgc ctccataatc
     7861 tgcggacgga caggactgcc atactccaag aggccatggt ggctgaggat aacgtggcgc
     7921 agaacagtca cttcctccag actgtcatcg atgcccaatt ccatcaagac cttggtaatc
     7981 tcttcatcaa tcaaggaaat gtgaccaatc agattgccac ggacagtgta gcctgtgtta
     8041 tcaggacctg tcagttcaat caccttggct aggtcatgaa gcatgattcc tgcaaagagc
     8101 aggctcttgt tgagctgggg atagatgtca ccaattttat ctgccaagcg taccatggtc
     8161 gctgtatgga aggacaagcc tgagtagaag gcatggtgat tggtcttggc tgctggatag
     8221 gaatagaatt ccttgtcgta cttgctgtaa agagcacgga caatccgctg ccaagtggca
     8281 ttttcaatgc ggaaaatcat ctggctcaaa tagtccttgg tgtccttgac atccacaggt
     8341 ggtttttcct tgaaatcagc agggtcgttg ggctcgcctg cctttggcaa acgaagaacc
     8401 agttgattga cctggggggt gttgttgtaa acctcacggc gaccctgcat gtgaacaaca
     8461 gttccagcag taaagtcttt gattttccct ggttgggcat cccagacctt gccttcaatc
     8521 tcgcccgtat catcttggaa ggtcagagct aggtagtctt tgccagctcg tgtttgacgg
     8581 acatctgcgg tcttgatgag atagaatcct tcgaagaatt catctttttt catttggtta
     8641 attttcatta tcttcctcat ctaatgggga caggccaagc agtcccttgg tttggtcatc
     8701 ttcgtacagg tcaatggtac gaagactacg ctcgatggcg ttggtgcgag tggttaggag
     8761 tttgtcaata ttgctgctgg cttgattgag ttgtttctga gccttaagca agaggtcaga
     8821 aaacttgcca aattccagct tgacattgcc caagaccttg gaaatatcat cggctgaccg
     8881 ttgaatattg agggtcttaa agccgacgga gagggaattg agcagggcag acagtgtggt
     8941 cggtcctgct accacgatat tttcctgacg gcgaagctca tcaaagaaaa tgggattgcg
     9001 gaccacctct gaatacagcc cttcggttgg caaaaacaac acgccaaaat tagtggtttc
     9061 aggcggattg aggtacttgc tctgaatatc cttggcaaaa cgtttaatag ccgccaagag
     9121 atttttgcga tggaggtcaa tctggtccct gtccccactt tcgtaagcat cttccaagcg
     9181 gtagtaatcc gccagcggaa acttggaatc gattggcaag tagatatagt cgccttccgt
     9241 ccgtcctggt agtttgaccg catactccac acgctcacta gagcctgaaa ctgtggcaaa
     9301 ctctcgctca tattggctag gtgtcaaaat atcctcgata atctgtccca gctgtaattc
     9361 acccatgatg ccacgggttt tggtgccaga caggaccttg ttaagactgc ccacatcacg
     9421 cgccaccgtc tgcatttcac ccagaccacg attgaccgat tccaactgct tggacaccgt
     9481 ttcaaaggag gcttgtaggc gggtttgcag ggttttctcc agcttttcct caaccgtctg
     9541 ccgcatttct tccaggcgtt tttcattgga ctcctgaatg gcctgcaaac ggcggtcggt
     9601 ggcatctcgc gtttccaagt ggctcttatt cagctcttga cggatgtcgg ttagctgttg
     9661 gtaaagctcc gtgcggagtc tttccacctc ctgatgaatg gcttgctgct gtttgagggt
     9721 agcattttcc agttgatagc tgagctgatc agacaaattg tctgctgtat cttcggcttg
     9781 atcttgcaaa agcagggcca agctctgcca ttttccataa agaaaaacca aggcaagcaa
     9841 gaccagtatc agcaaaataa gtaatacaat atccatctaa tccttgtcct tactgtagat
     9901 caggaccacg tagccctgat ccagttgaat aactatgtct ctatctataa attcgttaga
     9961 ggcatagcat tttttgaaaa aataattgct ggcatccaac gagtacttgg catgacgaat
    10021 ggtcaggcga ctctggtccg acggcataaa ggaaatgtac ttcataccag caatcgacga
    10081 aatcctatga ctgcctgcag gtcgaaaacg aatgatgttt tgacaatcca tcagttcaat
    10141 ctgctccata tagaccgcca agtctggctc agctggcaaa aagagattgg ccatcatgtg
    10201 atccatgcgt ccacccaaag cagcatatat gcgaacctgg gcctgcggat acgccttgaa
    10261 gatttccttt aaagccagct ccaaatctgt atcatctttt tcagcaggag cttgcaaaaa
    10321 acgctctgct tgatccttta tccgccccaa ctcctccgag gtcaccgagt caaaatcacc
    10381 gatagcccag tcaagaggta aggaatgttc caatagacga agtgagcctg catctacccc
    10441 tacatagagg tctgcaggct caggaaggca gtcaaatgaa ccacctgcta ttagggcaat
    10501 cttaatcatt gagggcagct ctcaatttgg caacgttggc atccaaatcg cctttgaaga
    10561 ggtaggaacc tgccacaaag acattggcac ccgcattttt ggctgaatga atggtcttat
    10621 cgtcaatccc gccgtccact tcgatgtcaa agttcaagcc tctggcttca cgtagtttga
    10681 ccaaggcctc aatcttctca gccacttctg gaatgtaggc ttgtccacca aaacctgggt
    10741 tgaccgtcat gagaagcacc tgatccacca agttgagcac aggctcaatg gtcacaagag
    10801 gtgtacctgg attgatgacc acgcccacct tcataccagc agcgcggatt ttctgcaagg
    10861 ttccctgcag gtgaacggtt gcttctgcat gaatggttaa aatatctgca cccgcacgtg
    10921 caaaggtctc aatatgattt tcaggattgg acaccatgag atggcaatca aaaaccagct
    10981 tgctatgagg acgcatagcc gcaaccacat ccgccccaaa gctaatattt ggcacgaaat
    11041 gaccgtccat gacatcaatg tgcacatact ccacacctgt cttttctaga cgtttgagct
    11101 ctttttcaaa atttgcataa tctgccgcca aaatagacgg tgcaatctta taatgtgaca
    11161 tagagaacca actttctatt tgaatttctt actaaccttg gcataggttt cacgctgatt
    11221 ttggatttcg ctgaggaatt ggagataatt gtcaaagcga ctttgggaaa tagcagagct
    11281 ggcaacagct tctttgactg cacaatccgg ctcatgggtg tgggtacagg tcctaaattt
    11341 gcagttctgg ctggcttccg caatctctgg gaaacaatct gtcagtgcct cagcctcctt
    11401 gacttcatag tctagcgatg aaaaacctgg cgtatccgca attttcccac cgaagacatt
    11461 gtagaaactg accgcacgag tggtatggcg accacgcccc agactatctg aaatcgcccc
    11521 tgtttccaag gctaattctg gcgcaatgcg attgagaagt gtcgatttgc caacccctgt
    11581 ctgccccata aagaccgtca ccttatcctg caataatggc gtcaattcct ccaaactata
    11641 gacaaaagga tagccaattt tctcatagat tgccttgaag gcatccatct ccgcccgttc
    11701 ttctaccaag tccatcttag agatatagat aatgggatcc atgtccttct gttccaaaag
    11761 aacaaggaaa cggtctagta aattggcgtt aaaatcaggt tccttggccg acatgataac
    11821 caccgcctga tcgatattga cgataggagg gcgaaccaaa ctatttttcc gctcatgaat
    11881 ctttaatata tagccttctg agttttcctc cgcagaaaag tccacaaaat cacccacgta
    11941 gggcgtttgg cctttcttac gaaaatttcc tctggctctg gtttgataaa tctgtccatc
    12001 cgcctcgaca tagtaaaaac cagccaaggc cttgataatt cttccttgca atgaagactc
    12061 cttcgtgtgt acttgttcct attataccaa atttcctaca aaaaaaccgc aagcggtttc
    12121 gattttacat tttcctctag tcatttcaat gtaaaaatag tataataaaa agcaagcgga
    12181 ggtggtggaa cggcagacac gcatgcttca ggcgcatgtg cccatcgggt gtgagggttc
    12241 aaatcccttc ctccgcatta tttataaagg ataaccccaa gtcaaaattg atgacttggg
    12301 ggcattttta tatcttctca ctcagtttcc catcacgcat ctccaaaacc acatcaaaca
    12361 tgtctaggat ggcagagtct gattcatgca agatggtgat gataagtttg tcctccagct
    12421 gcaagaggtt ggtcaaaacc tgcttagtca gggcagggtc taaatgggcg gtcggttcat
    12481 ccaagagcaa tatctcctta ccactcatca aggcacggag caggcacagg acatttttct
    12541 cgcctccact taagagacta ggattacttg cggtcatcga tgtgtcctgt aaactcgctg
    12601 gcaatctcct taacaagcca agcatgacat ctcttccctt ctcataggtt ccaaaaacag
    12661 acacattgtt ttcaaaatcg gtatggtaaa gatgctcaaa ctggctgaga tagaaggcgg
    12721 tagctgcttc catttcatgc aaaacatcgt tttccagata ggaaacactt cccttgtcca
    12781 gagccagttc tcctgccaac actcgtaaaa aagtggattt tccgctggct gacggaccaa
    12841 tgatggcata ctttttcccc ttgtcaaacc gataggaaaa atctgctacc gctaattctc
    12901 ccacatgata ggccacttcc ctgacttcta aggctgtcac attgggatag cttggcactt
    12961 gctcagacaa gacctgacca gcaagataac cttctaggtt ggcaactgtt tccttggtcg
    13021 aatggataga attgacatcc aagaggatgt atttcatagg atagatgaaa ttttcaacat
    13081 agctaaaagt cgcaatggca gcaccgacgg tcaactcttt ttgcagcaag agatagccga
    13141 ccaagccaaa agctgttaat tgcaccaaaa acatggaaaa tccattgaca acattggcca
    13201 gggtcttgaa ttgaccaaag cgaaaacggg cctgttcact ttcttctact gaccgatggt
    13261 ggacacggct gatggagcta aatgtttcgg gattgacacg gttcttagca gaaaagaggt
    13321 cagtcaccac ctgaaaatag ctttccaaac tctgtaaaaa tgcccgctga cgctgagaaa
    13381 gaggtcctga aatccacttg ggaatgaaaa ccgccaaggc cgatgacaaa ataatgccta
    13441 ccgcaaccag cggatgaaca aagagaaaga gggaaaccgc atagatgaac atgctcaaac
    13501 tagagcggat aatgtccatg aggggactca ggtaactctc ctcaatggtt tccaaatcgt
    13561 tgtcaaaaat ggacagatag gcagagacat tcttctctga aaatttggct aaaggctgtg
    13621 ataacaagct gtttgccaga ccttttttag ccgtgacata aaaaacctga gacaccttcc
    13681 actcataaac ctgggaaatg tactggaaga ctgaattggc aatgatggtc aaagcgtagg
    13741 ccaacaagag ccagacaagt cctgtccagc ccatctgaaa aatataatca aaaagatact
    13801 tatttaactc aggtaatacg acattggtca aactatataa gatatggaaa accaactgaa
    13861 tggcaataac agaccgaagt tgatagatga tttttttcat aactcctcct agaataggaa
    13921 caatctgaca aaaattaatt gctctcccca atcggtacca ccccatcata acgagaaagg
    13981 acatcatcgg acacacggtg ggaaatatga atgagcgtct tatcagctag tgaggtaagg
    14041 taattttcaa tcactgcata ggtttcctga tccaaggcag acagactttc atccagcaac
    14101 aagatatcct tatcttgcag caaggcacga atcaagagca ggcgttgctt ttgtccgcca
    14161 gacagtccgc tatcatcact aatttcctcg ctcaaagaag cataacttgg gaaacgactg
    14221 tcaaggttca tggtcttaat gagaaacatc agcctatcgt ctggaacctc ccgtcccatg
    14281 gtcaagttgt agagaaccgt atcatggaaa agagctccct cttgtggcag ataggcaatc
    14341 ttatcttgaa tggcttggta ggacaagtct gaaagagagg ttttatcaac gtaaatatcc
    14401 cctgcttgca gttggctatt cttggtcaaa ataagagcca aggaagattt gccagaacca
    14461 ctttccccaa gaattaaata cttcttacca cgttcaaacg ctacggtcag gtcttcaaag
    14521 acctgttttt caccgatagc ataactagcc ttgaccagtt gaatactctg gaaagctgaa
    14581 gctagttcct gtcccttcgt ttcttgaccc aaagtagata gctcaaactc ttgtttcaat
    14641 tccttaacgg catgcctgtc caaaaaggct gccgcaatgc tattaattgg atccaccaac
    14701 tgctctgaaa tggtcagaat agctgtcaag ccaccgatgg tcaaggcccc agataaaacc
    14761 tgaaaaccac cgataaagat aatcgaaaga gtagtcagat aaaagacaaa accgactaag
    14821 agccgcatgg ttactgtcgt tcgattggcc tgattgacct tgtcattaac tgcttgatag
    14881 cgatcattca gcccatctaa aacttgctgt ctttggcgac tatttttcac ttgcaaatag
    14941 ctcagaaagg tatctgaaac ccttgtatta tagacctgct gactgtccga aatcgcctcc
    15001 tgattgagcc ttctccgctt tttaaacaaa tagggaatca caactggcaa gaatgagatc
    15061 agaatcaaga aaatagctgt cagaccatcc aagctaagaa gggccaaact ggcaatgcca
    15121 aaggtacaag caccttgaaa aatcgtaaag aaagcgtcgt aataatcttc tttcaccgtc
    15181 tccaaatcat tattgagctg agaaatatag gcccctgccc cctgctcaac aaactgccta
    15241 aaaggtaaat caaaaatttt cccaataaag gtagcctgca attggaaacc tacttgattg
    15301 agatagctga cattggcaat ctgacgaatg tattcaaaga ccagcataac aaggacactt
    15361 agcaccatca gcacaaaata ggacacaaag gcttgtctat ctccaaccgc aatagcatca
    15421 ataataaagc gatattggta cagaaagcca acattgagca gggctactgc aaaaatacaa
    15481 gataaggtta gccaaaaatt cctctttttc atttctcctc cactgtttga tagatttctg
    15541 agcaaacatt tggtcgcttt catctatatt atagaatagg aattggagat gatttcattc
    15601 gtcccctata tgcaactatt tctcgttcac tattttttca agtatcgttt cataccaatc
    15661 tgctatattc tggctatcaa ccgctcgtaa aagtctgata cactttctca tctccaaaat
    15721 agcattggca cttcctgttt ttcgataatc ataaaaagcc ttaccaaatt taaacaaaat
    15781 ccgttcaaaa atttccgttt catcgaaaaa cagacctttg atggtctttt caagaaagat
    15841 tgcgtcggca agttccttat gttgaacgct gacgagatag gcactaagta aaatttgaga
    15901 aattgccaat cgatgtagtt tcatttcacg ataaaactgt gtacgaccaa ttagttccct
    15961 gcaaaaaagc atcatagtct ggtgttctaa ttcatccatg gtattggcaa atagcaagag
    16021 ctcgtaataa ctccagttgt ccacttgaaa taagtaatcc gttaaaaagg ctgtatcttc
    16081 tttcgaaaca actactgtct tatctaagtc gctcagttta tacgcgatta aaatagcatt
    16141 caaccggtga aactccctac gagaatctct ttctgctttt gctaattgtt cagacaagat
    16201 tttctttatg gttacaacat ctctgatata gatggattgt tttagttgtt ccaaaattct
    16261 agtcagctca tcttttttga aatcctgact ggcatacacg aactcgtcca catccacatt
    16321 catttctgcc agcacaccaa ataatttact aacagtaatg tcggattccc cattttcaaa
    16381 ccgagaaagt tgagaagtag aaatatgtcc cttggcgacc tccgccagac tcttcccctt
    16441 tccctctctt atcaatttta acgtcctacc aaaacgattc atgcttcacc tctacactca
    16501 cgattaaaaa atcatttgta aacataatta ttataccact ccttccccta tttgtgtcca
    16561 ttttcacata aagaaaaacc aagccagcta tctgacttgg tcgtgatttt attctgtcgt
    16621 ttcagtcgct actttgaaaa agtctttgta tttcaaaagg tagccttttc ctgtggagag
    16681 gtcgtattgg accagtttga gttcttctgc aactttcgca tctcgctcag cctgtcctac
    16741 tcggtcctta tgaagcactt ctgtcaagag ggcatagtaa ggactgacct tgttgttggt
    16801 cgtctccagc atcagtgcat tcatgtcgct agaattgacc aaatcataat ggtagtcttc
    16861 tgtttcaaaa ttactccaca cgaaataatc tgtcttgtac tgcgcgcttg ggtccgtcac
    16921 gaaggcagac tctggataca aacctggtag gtggtcaccg taaaaaacaa ctgtcacttt
    16981 cttatccaag gtcttaagct ggtctagaaa atcccttgtt gcctgatccg taaaggatag
    17041 gaggcgaaca tagctggtca agttttcatt ttcctcagcc gtgaagccct cacccgatgc
    17101 tgttatacct gcaggctcta gagaattcca ctgcacatgg ttctgcatgg taatagccga
    17161 cacaaagctg gtatcggcag aacgtacctg atccaaaatc aagtcatagg tcttcttgtc
    17221 actgacaaaa ttcccctgat aatcctcagc cgtcacagta agaggatact tggcactatt
    17281 gagagtgtag aattgctcaa tccccagctg cttatagata gaatttcggt tgtaactggt
    17341 atcgtagtaa ggatggatgg caatacgatt atctgctgga tagaggtcac tgatacttgg
    17401 caacttcttc atatttggcg ccacatccaa atagactgaa gaaatggatg agctgtaatt
    17461 gtagaagggc agaccactat agacctgaaa ctcgatatta gccgtaccac caccatagtg
    17521 gtcactcttc atcaagccac tggtagtctg gctcatgatg tactcaatat ttggaaggac
    17581 attttgacta agggttacac ctggaatccg acgcgggtca gccaaactct cactaagaat
    17641 gtagataacc gtctggtcag tcaattgacc tgtccgttct gcattgattt cctcagccaa
    17701 ggcggtatac ttattcacaa tagccttcat ggtcttctca gagtaattct caggcatttc
    17761 catactggtc ttgctgagtt gctgcaacca gaggaatgaa agagtgcgat aacgagccac
    17821 aaaggcgtag cccttccagt ctacgttccg ccagttattg acctgagaaa gaataggaat
    17881 ccagccagca atcttatggt ctttttcatt gcgaattgcc caacccattc ctaaaatcaa
    17941 ggatacgatg actgaaattc ctgccagcct tttccagata gaagcgacaa tccttccttg
    18001 gaagtacttc ttatgaatac gtcggtagat aaacacaagg aggactataa agacgagcga
    18061 taccaagaca acacgtagac tgataaagct gagaatcatc cccaagttcc cgacccattt
    18121 gaaatcattg ggggtcaatg gctccgaacg gtagcggaat ttgagaaaat tggccgtaac
    18181 caaaatgacg tttagactag caatcacggc aacagataag atttgaaggt tgataactag
    18241 gctaatgatg acattgagga aaaagaggca ggcaatttgg aagacaatag cccctggaaa
    18301 gagatggcgt gtgaaataag aaccagtcgc tccagccata gaagcctgat aaccaatatg
    18361 cgatagcgta gccagtgcca aactgataaa gagcatgctg tggacattgg ttcgattggc
    18421 cttaaactct acaaatgcct tatgaagata gcgaagaaaa atgtaagtcc ctataaaatg
    18481 aataggtgca aacagcggtg tctggctgaa aaactctatg taagaacctt tctcaaccaa
    18541 actctcataa tggctatctt tccaataaga tatagctagt ggactgagag aaagtaagct
    18601 ggtcaagagc aaatagccat ctggtaccaa gtgattggct gaccactggc ttaatttttc
    18661 tcgaattccc gtcttcttcc gccataaaaa tgccaacaat acgggaagaa gcaacatcaa
    18721 tagaagttca aactgaaaga gattattacg gaaaatattc cagggttgat acttcttggc
    18781 attgagccga tagaccaggt tgacaagata tagaaaacct agaaaatagc cgacatactt
    18841 ggcaaaggtt ttggtcttta caaacttctc gtatgtatca agcaagacca atacataaaa
    18901 cgtaaaaata gaataggcaa gcaagggcag aggaataaac cagagcggaa aagatacacc
    18961 gcttaacaaa agagcccgac ccatcgccag caaaacggtt ataatcataa ccagaataaa
    19021 ttgcttgctt gccttgggat tgatttgttt cataacattt ctctcttagg aaagatttga
    19081 ttttcgatag gcaaagatat agtaaatcaa ccagactagc catccagtca aactgataaa
    19141 gataactggc aataaccacc actgttgctt gtaggatagg acaagggtat tctgcccttt
    19201 tttgctggta accgttggta caccaatagt ggaaagctcc atttcttctc tatccaagac
    19261 ctggtcattt aaaacgagct gactatcttg atagacaatg attggcaggg ctgtttcctc
    19321 tgcttccgac gccgtccaag tcaccaccag ctgatcgccg tcaacttctt tgataaactc
    19381 ttgatttggt aaaatcactt ggtcacgata ggtaaagtag gtattatccg actcttcatt
    19441 ggtgatgtga cctgtgctat ctgacaagtc tggtacgtag tctggcgttg atttctgagc
    19501 aatgtggata aattcgccca agtctttaga atagaaagaa gctcgtaact cttccgttgt
    19561 accgtacaga gtcgtatgaa tgcgtttttg caggaaggta tcgctatagt aatgcccatt
    19621 gatttcctta taactctgat tccagaggaa accaaccgaa acaagcaaag aaataacagt
    19681 caaacctgaa aagattttct gtattttgtc tgacacgcct gaaacctgta cccccacaac
    19741 cgccaacaac aagacattgg catataggaa aaagcgaaat ggaaattgaa tcaattcgac
    19801 aagtgtaatt cctttacctg caaacaactg ccaagggaag aggttggtcg acaagattaa
    19861 aaatactgcg taggtcaaag caagaccagc cagaaccagc gattgtttct tccaattttt
    19921 caccaagaaa tagagataga ttccaaagaa aattggcaat ggatatggat agtatagaaa
    19981 ggctgttttg agccatgtta cggtattgag gacaaatttt ttgttaacaa atggtggtac
    20041 caaagtgttg gtcgcgttga tataaataag tggcaaccag atgttgatgg tcagaagcaa
    20101 aaaaattcct accgatagag ctacttgccc aataatcttc attttttggt ctgatttcca
    20161 ccaaccaata aggaagagta caccataggc aatgaccaag aacaaggtcg atagcatatg
    20221 aacctgcaac atgagcccta ccgctcctgc catgaggaat atcggtactt ttttagtctg
    20281 taagaaacga accgcaggaa tcaaacaaag cggaaagaga gccactcccc agctggtaaa
    20341 tccttgggtc gcccaccaat actgaatgga gtaggtcgtc acaaagaaga gggacaagag
    20401 gatagaatga gcatatttga ccttgacctc gcgcatgagc aggtagaggg aggtggcact
    20461 cagagtaccc aagagaagat tggttaaaat ctgatagcgg aaccaggtcc cacttaagag
    20521 taccaaggcc ccctgtagat aggcaaaata aggcccatag agagcattga caatccgtcc
    20581 tgactgctga tagccataca aactgataat ataggagaaa ttcccctcct tcatctgcat
    20641 agcagcatca tagaaacgat tgtagtggaa aatcaagtcc gcacctgtca ccatgccctt
    20701 agttagcaag tggggaacca ataataataa agaaaagccc acaaataggc ctagtgctac
    20761 taaatgggga tgctttttca gcatagtttt taacatatag ataccttcat aaaaaaagag
    20821 ggaaaccctc tcttgttttt gtaaatattc tgccaatttg cagacaatat ttttcaaaag
    20881 ttagtcacat ttcagtatag caagctttct ccccactgtc aacgaacaag gcaaacagga
    20941 aaacaatttt ccattaaaat aaatattgat tgcagatttc tccgcaatca atacttgctt
    21001 ataaaccaac ttcctgaagg ctgtcagaca aacgtgcgaa gtcagccatg gaaagggctt
    21061 ctccacgaac actggcttcc agctctgcca tgccaagtgc ctgcgtcagc ttgtccttga
    21121 cttcttcgga cttgccgaaa tggttggtca ggttgttcca cagggtcttg cggcggtgca
    21181 caaagctggc cttggacact cggaagaaga aatcttcgtc tttgacgctc accagaggtt
    21241 gctcgcggcg gaccattttg agaatggcgg agtccacgtt tggtgcgggc acaaagacgg
    21301 tgcgaggcac gataaaggcc accttggcag tcatgtagta ctggaccgca atggacaggc
    21361 ttccgtaagc cttggtgttt ggctcggcag aaatgcgatc ggccacctcc cgctgcatca
    21421 tgaccacgaa ctcgctgaag ggaatcttgc tctcaatcag gtgcatgagg atgggggtgg
    21481 tgatgtagta aggcagatta gccacgacct tgatgggcag gtcagggttc ttgaagttct
    21541 gaatctgggt ctgcaggtcg gtctttagga tgtcttggtt gaccacagtc acattgtcaa
    21601 agcgacccaa ggtatccgcc agaatcggaa tcaggcggtc atcaatctca aaagccatga
    21661 cctcagcggc attctccgcc aaaaactcgg tcaaggctcc gattccagga ccgatttcga
    21721 tgacattgac attctgatca atctctgccg tgtccacaat cttctgtaaa atattggtat
    21781 cggtcaaaaa gttctgaccg aaggatttct taaaggtaaa cccgtggcgt tccaggacag
    21841 cacgagtaac gtttttgtct gcaattctca tgtgtgttct ttcttgtttt ttatttcgcc
    21901 atttcactca atcgtgaaat aacacttagt tttctcatcg tcgctgtaat gtccagctgt
    21961 ttttctaaat aattggtatt tagttttttc tttcgagcat ctctcggaag atacatgtat
    22021 agacattgac ttcccagacg caactcctca tcaccaaagt cttggtgcaa taatttgttt
    22081 aatttttcac catttatctc atcattggta aagaccaaat gaacacgaaa aggatcatag
    22141 ccctcaccaa aagaattttc agcaactgct tgtgttaact ccatctgatg tttgacaatg
    22201 attgctaact ctgcacctat tttttcttta atggtttgat ggataagccg actgagttct
    22261 tcatctaata tatctgtttc acaaacaaca tttccacttt gaatataggt ttgaacagaa
    22321 gttaaaccaa cttccgtcaa aatttccgcc agatgggaca tcttaggaat tttattcttg
    22381 ccaacagggg taacacctcg aaggaggacg acttttttca tttgttaatc cccctcaccc
    22441 ataatgatcc tttaaagaca aaatatacag cttatctact tctaccatat aaatcagccg
    22501 attttcggca tcaattctcc gagaccaggc accctgataa tcatacttca agggttctgg
    22561 tttggcaatg ccttcaaaag gatgtcgttg catatccttg ataatcttat tgattcgctt
    22621 gagtgttttc ttatcctgac cttgccaata aagatagtct tcccaggcat cctctgtaaa
    22681 atggattccc atgttagtcc gcctctatca ggtttcgttc ttgggtttgt cccgttttga
    22741 ctttagccat accacgtagg actttttgag acagataagt gttccgagca acagcgaggg
    22801 tttcttgtaa actatcccac tcactctttg agagtacaac aatatcttcc tctggatttt
    22861 tattaaccac gaccaaaggt tcaaactcgt cattgacctt tttcatatag tcctttaagt
    22921 gatttcgaaa atgggaatat acaatagctt ccataagcaa tacctctcat catttctagg
    22981 cttactatag catagaaaaa aagagttgtc aaacttattg tacaactctt taacgattct
    23041 ccaccttcca ctcaccgtct tcaaaccagc agaaattctc cgtcagctgt ggctgttcaa
    23101 aaatttccaa catgggttca aaaccgtctg ccagctgaac attcttcaaa tccgcacgat
    23161 taatccagaa cacttctccc tcatctgaag attggataga gcctgaaaaa tggctggttt
    23221 tgtagcaaaa taccagatag cgatagtggt cagtagggtc tgtccagttt tgaatgccac
    23281 agagttctag attggatacc gtcaagcctg tttcttcttt gacctcgcgg atgacggagg
    23341 aaataattga ctcatttggc tcaacatggc ccccagggaa agtcacacca ggccactttt
    23401 cagacttcct atcctggact aacaccctct gaccgtctgt aatcatgcac atattggtta
    23461 agacaacttg ttctcgtcta gacattccct atctccccaa atcatcaaaa taatagagat
    23521 tcaaaaattc ttcctcagta actggatgtt caaaattgta aaaccagcga tagacttcca
    23581 cggctagtcc atcaaactct accctgtcgt ccatttcttg cacaccggca atatgaaaca
    23641 aacggctctg cttccaaata ccatccgcat tgacatagcc atcttcaact agaccacgca
    23701 aatagtctgc tagtttgttc ttatcaacct gctcatcctc ccaaacaagg acatcagccg
    23761 gcagcaagta ggtcacttct tcataagatg aataattttc ataagaaggt tcaaactcgt
    23821 ttttaaccaa gcacttaaca gcatagaccc tatccatgat agctccccat cgcctcctcc
    23881 acttccgcta gacttatccc aaacagctcc aatcgtttga ggagttgctt accgttgcag
    23941 tagccgatgc ggagtttttc tcccagatac tccctccgct tgcgactatc tccgcccata
    24001 aggagcccta ggcgcatcag gtctgacttg gtgatgtcaa agttatgttc atcatcatag
    24061 tagccacgca cgcccgcgag cgccttttcc aagtcggcaa agctggcgtg ctcaatgccc
    24121 aaggaccgcc cttttgtctt ggatttaggt gtagcctcgt cccgctgtaa aaaagcgtgt
    24181 ttaaccgtgg gaatggcctg cataatcatc ttccgaattc gctctccatt gtagtccggg
    24241 tcagtaaaga caatgacgcc ccgcaggtca tggagtttct cgatgcgttc taagtcatcg
    24301 tctgatatgg cagagcctct ggtttcgtag gtgtccacct cgtaaaatcg ttttaggttt
    24361 gctgtatcat ccttgccctc gacaacgagg acttcttgta tcttaatttt ctgagtcaat
    24421 tctgaacaag ctccttgcat tctcgtaggt cgctctcgcc acctcttcga ccgactggtt
    24481 gcgaagctgg gccagcatat ccaccacata tctggtgtag ccggtgcgat tttcccgacc
    24541 acgcttggga actggggcca ggtagggcgc atccgtctcg accaggattt tttctagggg
    24601 caatgcttgc gccgcttcct gaagttcaac ggcttttttg aaggtcacca ctcccgagaa
    24661 ggagatgtgc atgcccaggt ccatgaaagc ttgagcctcc tccagagtgc cagagaagga
    24721 atgcatgatg cctccacgcg gaccgacgcc gacttccttg atgatctggt aagtatcttc
    24781 caaagcatcg cgagtatgga ccacaaaggg caaatccaac tgcttggcca gctccatctg
    24841 tcgcttgaaa acacgagcct ggatttcctt atccgccgtc atccagtagt aatccagtcc
    24901 aatctctccc agggcaatga ccttgggatg ctggagggct ttgagcagat agttttccac
    24961 ttcctcgtca taagtgccag cctctgtcgg atgccagccc aatgtcagat aaatttcagg
    25021 gtgctggtca gcaagctcca tagccttgtc aatggttgca cggtcaaaac cgaccacatt
    25081 gtggagggtg acccccatct ccttggcaaa gtctaattct tcttggaccc gaccgtcaaa
    25141 ctgctcgacg ttgaggtggg tatgggtatc aaaaatttgt atcatcgttc catcactttc
    25201 tttcctacta ttgtaacata tttcagaaga ttcttatgag aagaaaaaaa accagcagac
    25261 tcgagttt
//
LOCUS       DASGCC010000012        23456 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.012, whole genome shotgun sequence.
ACCESSION   DASGCC010000012 DASGCC010000000
VERSION     DASGCC010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 23456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23456
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.012"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(28..933)
                     /locus_tag="U1404_000327"
     CDS             complement(28..933)
                     /locus_tag="U1404_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5347312.1"
                     /translation="MRIQQLYYIIKIAETGSMNEAAKQLFITQPSLSNAVRDLEKEMK
                     IKIFFRNSKGITLTKDGMEFLSYARQIVEQTELLEDRYKNPNAKRQLFSVSSQHYAFV
                     VNAFVSLLKETEMEDYELFLRETRTWEIIDDVKNFRSEIGVLFLNHFNRDVLLKLLDD
                     NRLSYTTLFTAKPHVFVSKTNPLAQRKSITLDDLVDFPYLSYEQGIHNSFYFAEEILA
                     QEHHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLEFDDEIELVYI
                     QHEKALLSDMGEKFINYLLEEVKFD"
     gene            1030..1920
                     /locus_tag="U1404_000328"
     CDS             1030..1920
                     /locus_tag="U1404_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEM5347313.1"
                     /translation="MINRANTAFFSCNLASQQGFFSISTFLFSVSLLYRIGEKMILKE
                     QMLLVDQVQLAPRIFAMTLQGNMVQDMKMGQFIHIRVPDDSMLLRRPISISEIDRNKS
                     QCRIIYRVEGQGTEVFSKMTVGQYLDVMGPLGKGFEVDFLKEGDRILIIGGGIGVPPL
                     VEVAKQAANRGAKVTSVIGFATKEAVILEEELASYGVVYVTTDDGSYGRKGNVATVVE
                     ELTNEFAAIYSCGAPAMMNYVDQRFQEHPHAYISLEARMACGMGACYACVVKPKQGQE
                     HENKRVCKEGPVFATGSLIL"
     gene            1930..2871
                     /locus_tag="U1404_000329"
     CDS             1930..2871
                     /locus_tag="U1404_000329"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEM5347314.1"
                     /translation="MTKRLAISLPGLDLKNPIIPASGCFGFGQEYADYYDLNQLGSIM
                     IKATTRHPRYGNATPRVAETPAGMLNAIGLQNPGVDVVLSEKLPWLEQHFPDLPIIAN
                     VAGFSNEEYAYVSGKISKAPNVKAIELNISCPNVDHGNNGLLIGQVPELAYQAVKAAV
                     EASSVPVYVKLTPSVADITLLAKAAEAAGATGLTMINTLVGMRFNLKTRQPILANGTG
                     GMSGPAVFPVALKLIRQVAQMTDLPIIGMGGVDTADKAIEMMVAGASAIGVGTANFTD
                     PFACPKIIQDLPKRMEVYGIDSLEGLRREIRHRLGKR"
     gene            3036..3731
                     /gene="pyrF"
                     /locus_tag="U1404_000330"
     CDS             3036..3731
                     /gene="pyrF"
                     /locus_tag="U1404_000330"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEM5347315.1"
                     /translation="MKETRPIIALDFAGKEEVQSFLEQFPPDEKLYVKVGMELYYAEG
                     PGIINYLKGCGHSIFLDLKLHDIPNTVESAMKVLAKLGVDMTNVHAAGGVEMMRAARR
                     VLGKDAVLIAVTQLTSTSEEQMRTDQNIQTSLQEAVVHYAQRAQEAGLDGVVCSAHEV
                     ALIKDATSSDFVCLTPGIRPTGGEVGDQKRVMTPADAARIGSDYIVVGRPITKSEHPY
                     QTYLSIKEEWNRG"
     gene            3724..4050
                     /locus_tag="U1404_000331"
     CDS             3724..4050
                     /locus_tag="U1404_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEM5347316.1"
                     /translation="MDKIYQIIIDRPIGYIDKFGNQYPINYGYVPNLLAGDGEEQDVY
                     IISKAVRQPLTAFEGKLVAIIHRRDDVEDKWVLTGLDEKLTVTEIKEKTNFIEQYFDS
                     WIEMVD"
     gene            4187..4819
                     /locus_tag="U1404_000332"
     CDS             4187..4819
                     /locus_tag="U1404_000332"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEM5347317.1"
                     /translation="MTLATEIASHLLDIKAVHLRPEKPFTWASGIKSPIYTDNRITLS
                     YPETRNLIEDGFVQRIEEEFPEVEVIAGTATAGIPHGAIIADRMNLPFAYIRSKPKDH
                     GAGNQLEGRIVKGQKMVVVEDLISTGGSVLDAVAAAEREGADVIGVVAIFTYELPKAD
                     CNFDNAGVKLVTLSNYSELIKVAKVQGYINADGLNLLKKFRQNQETWQED"
     gene            4928..5854
                     /locus_tag="U1404_000333"
     CDS             4928..5854
                     /locus_tag="U1404_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5347318.1"
                     /translation="MISVIVPCFNEEEAIPYFYDAMEKVRKEMGEQFEYIFVNDGSKD
                     RTLTVLRQLSGQDRAVRYLSFSRNFGKEAALYAGLQAAQGELVTVMDVDLQDPPEMLM
                     EMKAMLDGNPDLDCVGTRRVSRDGEPPIRSFFAKLFYKLMNKISQVEVVDGARDFRLM
                     RRHMVDAILSVSEYNRFSKGIFAWVGFETEYLPYENVERVAGETSWSFWKLLSYSIEG
                     IINFSDTPLNIASYTGFFTFLLSLVLMVFVVFKTLVFGDPTIGWPSTICIILFLGGLQ
                     LMTIGILGKYLAKVFLETKKRPIYIVKEKSSN"
     gene            5864..6517
                     /locus_tag="U1404_000334"
     CDS             5864..6517
                     /locus_tag="U1404_000334"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001841111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM5347319.1"
                     /translation="MEHSAWHELIKAQLPEHYFGKINQFLDYVYAGGTVYPPREKVFA
                     AIQTTDLEEVKVVILGQDPYHGPGQAQGLSFSVPNSVPAPPSLQNILKELTDDIGVKQ
                     DHDLTAWAEQGVLLLNACLTVPAGQANGHAGQIWEPFTDAVIKVVNSLDQPVVYILWG
                     AYARKKKALITNPKHLVIESAHPSPLSAYRGFFGGKPFSQANAYLTSQGRTGIDWLR"
     gene            6557..7828
                     /locus_tag="U1404_000335"
     CDS             6557..7828
                     /locus_tag="U1404_000335"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEM5347320.1"
                     /translation="MLLVKNGRVLDPQSGLDKVCDILMDGSEIVKIAESISEDVEQEV
                     IDATGLVVAPGLVDVHVHFREPGQTHKEDIHTGALSAAAGGFTSVVMMANTNPTISNV
                     ETLKEVLDSAKKEAIHIYSVATITDHFDGQNLTDFPALLEAGAVAFSDDGIPLTNAGV
                     VRKAMKLAKEQGCLISLHEEDPDLNGVLGLNEQVAEKHFHVCGATGVAEYSMVARDVM
                     IAYETGARVHIQHLSKAESVKVVEFVQGLGANVTAEVAPQHFSRTEDLLLIKGANAKM
                     NPPLRLESDRLAVIDGLKSGVISVIATDHAPHHADEKNVEDLTQAPSGMTGLETSLSL
                     GLTHLVEDGHLTLLQLLEKMTINPAKLYGLDAGYLAENGPADLVIFDPNANRLVTADF
                     ASKSANSPFVGDSLKGQVLYTIANGQIVFGK"
     gene            7959..10073
                     /locus_tag="U1404_000336"
     CDS             7959..10073
                     /locus_tag="U1404_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM5347321.1"
                     /translation="MKKKKILLPVMSTLLLAPFVLAQQVQAAETTTAATTTNQPATTD
                     ATATVPATSVENVATEETVVPAAEETVEAVIIHTNDVHGRILEEKNVIGDAKAAAVIE
                     EERAKVENTIVVDAGDAFQGLPISNSTKGEDRANIMNQVGYDAMAVGNHEFDFGMDQA
                     IKYKETLNFPLLSANTYVNGARVFEASTIVDKTPTVVGDEFVVIGVTTPETATKTHPK
                     NVEGVTFTDPVTEVNKVIDEVEARALADNRVYKNYIILAHLGVDSTTPVEWRGSTLAE
                     ALSKNSKLAGKRVIVIDGHSHTVEATTYGDNVTYNQTGSYLNNIGKVTLKSDKLLGEA
                     SLISAADTKNVTPNAKIAALVDEIKAKYEAENAQVVIENNPVELNGDRSNVRVRETNL
                     GNAVTDAIYAYGQTGFSNKTSLAVTNGGGLRATIAKDQPVTKGDIIAVLPFGNIVSQI
                     TVTGQQIYDMFTKSLSSTLQVNPETGEMLLDENGMPLFEASGGFLHISGANVFYDPTL
                     PVEERVLLIGILNPETGEYDALDLEKTYYLATNDFLAAGGDGYTMLGGAREEGPSMDS
                     VFAEYLKTADLSAYEVVNPYSRIIPVNSSIDTDEDGYPDFIEILLDTDPENPASNPET
                     VPAENTDSPSNQVQNTSATDKKAPVDSPKVGDKKTEVASPVKTTKAGVLPNTGDQMNL
                     TLSLFGLGLAGLAMAVGRRKEN"
     gene            10125..10772
                     /locus_tag="U1404_000337"
     CDS             10125..10772
                     /locus_tag="U1404_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEM5347322.1"
                     /translation="MQTVFQYQKEGDREQISSYVLLSNSPRRKQLLGFLQPQIASVEV
                     DERGIEEHFMKQFATDDFLTRAAKTCCEISKAKSDMDLVTGHLYISADTIVVSDGQIF
                     NKPQDLTEAEIMLRSYFGKSHHVVTSVCLRTRHSLDVFYTVAQIDFVDYYPALEEVIQ
                     SYIREKQPLDKAGAYGIQELDPRFVSGISGDIHTIIGLPVAEVSRRIFSEEGFEK"
     gene            10824..11312
                     /locus_tag="U1404_000338"
     CDS             10824..11312
                     /locus_tag="U1404_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEM5347323.1"
                     /translation="MTVDIERYKQLAQQKQGEHRKFLANLKKKAPKNLDRIVQDIHAE
                     VFSEIDCTECANCCKTLGPLFTEADITRIAKHLRMKLPVFEDMYLRVDEDGDKVFQSM
                     PCPFLGGDNLCSIYDARPKACREFPHTDRKKIYQINNLTIKNTLICPAAYLFVEKLRE
                     RI"
     gene            11412..12263
                     /gene="ylqF"
                     /locus_tag="U1404_000339"
     CDS             11412..12263
                     /gene="ylqF"
                     /locus_tag="U1404_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEM5347324.1"
                     /translation="MATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPM
                     LTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAK
                     SLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQ
                     WLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGLDYFKANY
                     PERLQERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFVKDVRDGRLGTYTLDRV
                     SDLDGND"
     gene            12250..13029
                     /locus_tag="U1404_000340"
     CDS             12250..13029
                     /locus_tag="U1404_000340"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEM5347325.1"
                     /translation="MATIKEVTTLLAQVDSLDSPVWAELSQDERAGVQAAIKKRRKEL
                     DKEVAEDARLEAMLFYEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRY
                     LNDSKKIPKSKHEAIYQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQ
                     KPDHLLIDAMKLDTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGF
                     AKNAGYGTAEHLEGLNKLGITPIHRKTFEPIKSMVTGGKSS"
     gene            13026..14036
                     /locus_tag="U1404_000341"
     CDS             13026..14036
                     /locus_tag="U1404_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM5347326.1"
                     /translation="MTVFFWIFLASIGLFGLLYFWERRSIFISLFALNILVWALAWII
                     STGILENNEILRLLAIAVAMVLFLAFLSGPFVLLFTLYLNGFQILEREGVRFHNFLSM
                     GLAVALTFYLFIAPFVVQSLSGISLLNMVFVYVGFLVSYAIIISMLYTTSSFVNFVNL
                     FPGKLDYVVVLGAGLIGDKVTPLLASRIDKGIAIYQKQPGSKLIMSGGQGPDELIAEG
                     QAMANYALEQGIPAEDIIIENQSTNTEENLKFSYALMKPGSRFALVTNYYHVFRALLL
                     ARQLKIKCIGYGAKTKFYFSLNAFIREFVGYVVMSRKTHLVFLSIVSALYLIGVIISL
                     MH"
     gene            complement(14069..14719)
                     /locus_tag="U1404_000342"
     CDS             complement(14069..14719)
                     /locus_tag="U1404_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEM5347327.1"
                     /translation="MNPSLKLSLQLSFGEEVANSVTHAVGALLMLVLLPVTAIHSYQD
                     YNLTAVIGMSIFVISLFLMFLSSSIYHSMPYASTHKYILRIIDHSMIYIAIAGSYTPV
                     ALSLVGGWLGYLIVGLQWGLTIFGILYKIFAKKINEKFSLFLYLFMGWLVVFILPAIL
                     QKTGMAFGILMLAGGLSYTIGALFYAKKKPYFHMIWHLFILLASALQYIAIVYFML"
     gene            complement(14709..15260)
                     /locus_tag="U1404_000343"
     CDS             complement(14709..15260)
                     /locus_tag="U1404_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1836 domain-containing protein"
                     /protein_id="HEM5347328.1"
                     /translation="MKQTIPYWHELPNLDLYLDQVLLYVNQVVNSQESLEQKSLYSMK
                     INSSLGNETDDRTGVHQGKLTTDNVDFRRVLTAAMINNYVKHKQIEKPVKKKYQKQQV
                     ARLIALTILKNVFSIQEISQTLHLLLQSSHSETLYNHFVDCMRNEENEETPDIIRYAC
                     QSVKLYYKTRQLTMELERSHHES"
     gene            complement(15368..16702)
                     /locus_tag="U1404_000344"
     CDS             complement(15368..16702)
                     /locus_tag="U1404_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM5347329.1"
                     /translation="MKIIIVGGVAGGMSAATRLRRLMEDAEIIVFEKGPYVSFANCGL
                     PYYISGEIAEHDSLLLQTPESLKQRFNLDVRPFHEVISIDAEQQTVTVKTPTGELIES
                     YDKLILSPGAKPVIPNLSGIEEANNLFTLRNVPDLDKIMIKLDQIKSGHVVVIGAGFI
                     GLEMAENLALKGWKVTLVEQAPHVLPTFDLEMARYVEAELTNKGIEVITGQSVTAFHE
                     KGQVLELSNGQTLSSDVTILSVGVAPDSQLAKKTGIELGLRGGILVDKNYQTSQNNIY
                     AVGDAIVVKQEITGQDALISLASPANRQGRQVADVIAGLDRKNKGSIGTAIVKVFDLA
                     AASTGLSERTVQSLGYEHAIIHTTGKDHAGYYPGEVANGQFREFIHIPLDQLRERVGE
                     LDASKEYIVICHSGLRSYIAERILKEKGFGVKNLDGAFSLYKMALPENIIQP"
     gene            complement(16699..17022)
                     /locus_tag="U1404_000345"
     CDS             complement(16699..17022)
                     /locus_tag="U1404_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM5347330.1"
                     /translation="MFKQLFSGMFSNSDSLPITDVEQAIQSSNAILLDVREVDEFASG
                     HIPQAINQPLSQLDQFKGDKTKNYLVICQSGMRSQRATEYLKSQGYQAINIKGGMNAW
                     TGGIA"
     gene            17141..17401
                     /locus_tag="U1404_000346"
     CDS             17141..17401
                     /locus_tag="U1404_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEM5347331.1"
                     /translation="MNTDKKKMINRLKRAEGQLRGIQKMIEEDQECIDIVTQLSAVRS
                     SINSMMGMVIAQKVQDCITHPSENPEEQEARLAQAINLIIKK"
     gene            17412..17969
                     /locus_tag="U1404_000347"
     CDS             17412..17969
                     /locus_tag="U1404_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HEM5347332.1"
                     /translation="MPTEKEKMIAGQFYMAADAELREMRTFARQQMKKFNEELDGQAR
                     SERLKNWLGATGERIYVEPNFYCDYGSNIHVGEDFYANFNCTMLDVCPITIGKNAMLG
                     PNVQLLTPLHPLDPDERNSGLEYGSPITIGDNFWAGGGVTILPGVTLGNNVVVGAGSV
                     VTKSFGDNVVLAGNPARVIKEIPKK"
     gene            18028..18871
                     /gene="dprA"
                     /locus_tag="U1404_000348"
                     /pseudo
     CDS             18028..18871
                     /gene="dprA"
                     /locus_tag="U1404_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735834.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
     gene            18964..21057
                     /gene="topA"
                     /locus_tag="U1404_000349"
     CDS             18964..21057
                     /gene="topA"
                     /locus_tag="U1404_000349"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEM5347333.1"
                     /translation="MATKTVSKKKTTTKKNLVIVESPAKAKTIEKYLGKNYKVVASVG
                     HIRDLKKSSMSIDFDNNYAPEYINIRGKGPLINSLKKEAKNAKQVFLASDPDREGEAI
                     SWHLAHILGLDANDKNRVVFNEITKDAVKNAFQEPRAINLDLVDAQQARRVLDRIVGY
                     SISPILWKKVKKGLSAGRVQSVALKLIIDRENEISNFKPEEYWTIDATFKKGSKKFQA
                     SFYGIDGKKTKIENNEQVKEILARLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAA
                     NKINFRTRKTMMVAQQLYEGVSLGTGGTQGLITYMRTDSTRISPVAQAQAADFITERF
                     GATYSKHGNKVKNASGAQDAHEAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVAS
                     QMAVAVFDTMSVRLGQNGIVFAANGSQVKFDGYMAVYNDADKNKMLPDMEQGDTVVRA
                     STNPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPT
                     ELGEIVNKLIVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPFKVELSKA
                     EEQMEKIQIKDEPAGFDCDVCGHEMVIKLGRFGKFYACSNFPDCRNTKQITKEIGVTC
                     PVCQKGQVIERKSKRNRLFYGCDRYPECEFTSWDKPVGRSCPKCDHYLVEKKVRGGGK
                     QVVCPNGDYEEDKIK"
     misc_feature    21473..21607
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            21634..22128
                     /locus_tag="U1404_000350"
     CDS             21634..22128
                     /locus_tag="U1404_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001287276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEM5347334.1"
                     /translation="MSEAIIAKKAELVNAVAEQMKAATSIVVVDARGLTVEQDTVLRR
                     NLRGAEVEYKVIKNSILRRAAEQAGLEGLAELFVGPSAVAFSNDAVAPAKTIYDFAKT
                     ADALEIKGGAVEGKVSSKEEIEALATLPNREGMLSMLLSVLQAPVRNVAYAVKAVAEK
                     EDAA"
     gene            22194..22559
                     /gene="rplL"
                     /locus_tag="U1404_000351"
     CDS             22194..22559
                     /gene="rplL"
                     /locus_tag="U1404_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEM5347335.1"
                     /translation="MALNIENIIAEIKEATILELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAEEAKDSFDVELTSAGDKKVGVIKVVREITGLGLKEAKELVDGAPAMVKEDVATA
                     EAEEIKAKLEEAGASVTLK"
     gene            22684..23433
                     /locus_tag="U1404_000352"
     CDS             22684..23433
                     /locus_tag="U1404_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347336.1"
                     /translation="MKSYKNYIFDFYGTLVDIRTDENKLEVWNQLTQIYNAFGCSYRP
                     RQLKNAYHRFVEEAERFLAETVSYQYVEIDLETLFIRLLTDAPNENQSTNKPTDLETF
                     GQVVATIFRVLSREKLEAYENTLTSLQTLKDREARLFILSNAQRIFTQAEIEQTGCAD
                     LMEKIYISSDFKMKKPEPAFLQLVLEENNLDVKETVMVGNDLTSDIAIAHELGMDSIL
                     LNTFPYSQEEIDSYRRLGWNFEVVGDIAELL"
BASE COUNT         7051 a         4388 c         5335 g         6682 t
ORIGIN      
        1 tttgtctata taaaattgta tttattttta gtcgaatttt acctcttcaa gtaggtaatt
       61 gatgaatttt tctcccatgt cggacagcaa tgccttttcg tgttgaatat agaccaattc
      121 gatttcatca tcaaattcca gaggaattga tacaatatta tctccgttaa gatttgaatt
      181 aaggatacct gttgcgattg tatagccatc tagaccgatt aagagattga agagtgtggc
      241 acggtcagat acgacaatcg attttttatg gtgttcctgg gctagaattt cttctgcaaa
      301 gtagaaggag ttgtgaatac cttgctcgta gctgagatag gggaaatcta ccaaatcatc
      361 gagagtgatt gactttcttt gtgccaaagg attggttttg ctgacaaata catgtggttt
      421 ggcagtgaag agagttgtat aggatagtcg attgtcatcc aaaagtttca gcaggacatc
      481 acggttgaaa tggttgagga aaagcactcc gatttctgag cggaaattct taacgtcatc
      541 aatgatttcc caggtccgtg tttcacgtag gaagagttca taatcttcca tctcagtttc
      601 tttcaaaagt gagacaaagg cgttgacgac aaaggcatag tgttgagaag agacgctaaa
      661 tagttggcgt tttgcattag gatttttata gcgatcttct aaaagctctg tctgttcaac
      721 aatttgacga gcataggaaa gaaactccat gccatccttt gtcagggtaa tgcccttaga
      781 attacggaaa aagattttaa ttttcatttc tttttccagg tctcgtacag cgttggaaag
      841 gctgggttgg gtaatgaaga gttgtttggc agcctcattc atactgcctg tttctgcaat
      901 tttgataata tagtataatt gttggattct catacctcta ttgtaacatg atttgacaaa
      961 ttattctaaa aaatgtataa tgctgaaaat atatccttta actgagtcca gagaggcgaa
     1021 gaagggaacg tgataaatag ggcaaatact gccttctttt cgtgtaacct tgctagccag
     1081 caaggttttt tctctatatc gactttcttg ttttctgtgt cattgttata tagaatagga
     1141 gaaaagatga ttttaaaaga acagatgtta ctggtggacc aagtccaact agcgccacga
     1201 atttttgcta tgaccttgca gggtaatatg gtccaagata tgaaaatggg tcagtttatc
     1261 catattcgtg ttccagatga ttccatgctc ttgcggagac caatatctat ttccgagatt
     1321 gatcggaata agtctcaatg tcggattatt taccgagtgg aaggtcaagg gacggaagtc
     1381 ttttcgaaaa tgacggtcgg gcagtatttg gatgttatgg gaccgcttgg gaaagggttt
     1441 gaagtagact ttctcaaaga aggtgaccgc attctcatca ttggcggagg aatcggtgtt
     1501 cctcccttgg tggaagtggc gaaacaggcg gcgaaccgtg gcgccaaagt cacgtcagtc
     1561 attggctttg ccaccaaaga ggccgtcatt ttggaagagg aactggcaag ttatggggtg
     1621 gtctatgtta caacagatga tggttcctat gggcgtaagg ggaatgtcgc aacggtcgtt
     1681 gaagagctga caaacgagtt tgcagccatt tactcatgtg gggcgccagc tatgatgaac
     1741 tatgttgacc aacgctttca ggaacatcct catgcctaca tttcactgga ggctaggatg
     1801 gcttgcggaa tgggggcttg ctatgcctgt gttgtcaaac caaagcaggg acaagaacat
     1861 gagaataagc gtgtctgcaa agaaggtcca gtctttgcga ctggtagtct gattttatag
     1921 gaggttgata tgacaaaacg attagcgatt tccttaccag gcttggactt gaaaaatccc
     1981 atcattccag cctctggttg cttcggtttt ggtcaggagt atgcagatta ttatgacctt
     2041 aaccagcttg gatccattat gattaaggcg actacccgtc atcctcgtta tggcaatgcg
     2101 actccccgtg tagccgagac accagcaggt atgctcaatg ccattggact tcaaaatccg
     2161 ggtgttgatg tagtcttatc cgaaaaactc ccctggttgg aacagcattt tccagacttg
     2221 cctatcattg ccaatgtggc tggtttttcc aatgaagaat atgcctatgt gtcagggaaa
     2281 atttcaaaag ctcctaatgt aaaagcaatt gaactaaata tttcctgtcc caatgtggac
     2341 cacggaaata atggtctctt gattggacag gtgccagaat tagcctatca agcagtaaaa
     2401 gcagcagtcg aagcctcatc tgtacctgtt tacgttaagc tgacaccaag tgtggcagac
     2461 ataaccctgt tggccaaggc tgctgaggct gctggagcga ctggcttgac gatgataaat
     2521 accttggttg gtatgcgatt caatctcaaa actcgacaac caatcttggc aaatggtaca
     2581 ggaggaatgt caggtccagc agtttttccg gttgctctca aactcattcg tcaggttgct
     2641 cagatgactg atttaccgat tattggtatg ggtggtgtgg atacggcgga caaggctata
     2701 gagatgatgg ttgcaggagc ttcagccatt ggggtaggaa cagccaactt tacagaccca
     2761 tttgcttgtc caaagattat tcaagatttg ccaaaacgca tggaagttta tggtattgat
     2821 agtttggaag gtttacgccg agaaatcaga catagattgg gtaagcgttg acaaaggtaa
     2881 aataaaagag taatataaag aaaatatctc ctttaactaa gtccagagag gctaggaagg
     2941 tgtcatgtaa tatgctggaa aggtgatttt caagctgaat tcgtgcacat ccctgaccga
     3001 tttggcaggg atttttgtgt aaatgaaagg attttatgaa agaaacaaga ccaattattg
     3061 cccttgactt tgcaggtaaa gaagaagttc agtcttttct ggaacagttc ccaccagatg
     3121 agaaactcta tgtaaaggtt ggaatggagt tgtattatgc ggagggacca ggtattatca
     3181 attatttgaa aggctgcggt cacagtattt ttctagattt gaaactgcat gatattccta
     3241 ataccgtcga gtctgctatg aaagtcttgg caaaactcgg tgtggatatg accaacgttc
     3301 acgctgctgg tggtgttgag atgatgcggg cagcacgaag ggtattgggt aaggatgctg
     3361 ttttaatagc ggtcactcag ttgacctcta cctcagaaga gcagatgaga acggaccaga
     3421 atatacagac tagtttgcag gaagcagttg ttcactatgc tcaaagagca caagaagctg
     3481 gtcttgatgg ggtggtttgt tcagcgcatg aggtggcttt gattaaagat gctacaagtt
     3541 ctgattttgt gtgcctgacg ccagggattc gtccgactgg cggtgaagta ggcgatcaga
     3601 aacgagttat gacacccgca gatgctgctc gaatcggtag tgattacatt gtagtaggtc
     3661 gcccgattac aaaatcagaa catccttacc agacctattt atctattaaa gaggagtgga
     3721 atcgtggata agatttatca gattataatc gatagaccta tcgggtatat tgataaattt
     3781 ggcaaccagt accccatcaa ttacggctat gttccaaatc tattggctgg agatggtgaa
     3841 gagcaagatg tttacatcat ttccaaagct gttcggcagc ccttgacagc tttcgagggg
     3901 aaattggtcg cgattataca tcgcagagat gatgttgagg ataagtgggt tctgacaggc
     3961 cttgatgaaa aacttaccgt gacagaaata aaagagaaaa ccaatttcat tgaacagtat
     4021 tttgattcat ggattgaaat ggtggactaa gagaagtctg taagaattca acctggataa
     4081 atatagtttt tatagggttc atagattgaa ccaatgcttt aggagtgaca ggctattcgg
     4141 cgggatggtc atgttggaat ggtacgcatt tagaaggagg tctattatga cattagcaac
     4201 agaaatcgca tcacacttat tggatattaa ggcagttcat ctgcgtccag aaaagccatt
     4261 tacatgggca tcagggatca aatcacctat ctatacagat aatcgtatta cactatctta
     4321 tcctgaaact cgaaatttga ttgaagatgg ctttgttcag cgtatcgaag aagaatttcc
     4381 tgaggttgag gtgattgccg gaactgccac agcaggtatt cctcatggtg ctatcattgc
     4441 agataggatg aatttgccat ttgcttatat ccgtagcaaa ccaaaagatc atggtgcagg
     4501 gaatcaatta gagggtcgca tcgtcaaggg acaaaaaatg gttgtcgttg aagacctgat
     4561 ttctactgga gggtctgttc tagatgccgt agcagcagct gagcgtgaag gcgctgacgt
     4621 tattggtgtt gtggcaatct ttacctatga attgccaaag gcagattgta attttgataa
     4681 tgctggcgtg aaattggtga cgcttagcaa ttattcagag ttaatcaagg tcgcaaaagt
     4741 acagggatat atcaatgcag atggtttgaa tctgcttaaa aagttccgtc aaaatcaaga
     4801 aacttggcag gaagactaga tttaaaacga gcccacgcac gatttctggg aacttatcct
     4861 gtaaaatggt ataatagtct ctaacgtatt ttgagaatac aataattgac cgtatgagga
     4921 gaagaacatg atttcagtta tcgtgccttg ttttaatgaa gaagaggcaa ttccctattt
     4981 ttacgatgct atggagaaag ttcgtaagga gatgggggaa caatttgagt atatttttgt
     5041 caatgatggt tcaaaggata ggacattaac ggttttacgc caattgtctg gtcaagaccg
     5101 agctgttcgc tatctttcct tttcaaggaa tttcgggaaa gaagctgctc tctatgcagg
     5161 tctacaagct gcgcaaggtg agctagtgac tgtcatggat gttgatttac aagatccacc
     5221 tgaaatgttg atggaaatga aggctatgtt ggatggaaat ccagatttag attgcgttgg
     5281 aacccgtcgt gtcagtcgag atggtgagcc accgattcgt agcttttttg caaaattatt
     5341 ctacaaattg atgaataaaa tcagccaggt cgaggtagta gacggtgccc gtgatttccg
     5401 tctcatgcgt cgtcacatgg tagatgccat tctatctgtg tctgaataca atcgcttttc
     5461 aaaaggaatt tttgcttggg taggattcga aacagaatac ttgccctatg aaaatgttga
     5521 gagggtcgct ggcgaaacta gttggtcttt ctggaaattg ctttcttatt ctattgaagg
     5581 aatcatcaat ttttcagata cacctttgaa tattgcctcc tatacaggtt tcttcacctt
     5641 cctattgtcg ctagttctaa tggtttttgt ggttttcaaa accttggtgt tcggagatcc
     5701 tacaattggc tggccgtcga ctatttgtat catcctattt ttgggaggtc tgcagttgat
     5761 gaccattggt attctcggta aatatttggc aaaagttttc ttggaaacga agaaacgtcc
     5821 gatttatatt gttaaagaga aaagttcaaa ctaggagcag tttatggaac attcagcttg
     5881 gcacgaattg ataaaggcac agttgccaga gcattatttt ggtaaaatca atcagttttt
     5941 agattatgtt tatgctggtg gaaccgttta tccgcctcgt gagaaggtat ttgctgccat
     6001 tcaaacaacg gatttggaag aggttaaagt agttattttg ggacaggatc cctatcacgg
     6061 acctggtcag gcacagggct tgtcattttc tgttccgaac tcggtgccag ctccgccatc
     6121 tcttcaaaac attttaaaag aattgacgga tgatattggc gtcaaacaag atcatgattt
     6181 gacagcatgg gcggaacaag gtgtgctttt actcaatgct tgtttaactg ttccagcagg
     6241 tcaggcaaat ggacatgcag ggcaaatctg ggagcctttt acggacgctg ttattaaggt
     6301 ggtcaatagc ttagaccagc ctgttgtcta tattctttgg ggtgcttatg ctcgcaagaa
     6361 aaaagcgttg ataaccaacc caaaacatct ggttatcgaa tctgctcatc caagccctct
     6421 ttcagcctat cgaggtttct ttggaggcaa gcccttctca caagcaaatg cctacttgac
     6481 ttcacaaggc agaacaggaa ttgattggct gcgatagtag atggtaatgg ctttggtact
     6541 acaaaggaga atatgaatgt tattagtgaa aaatggtcgt gtattggatc cgcaatctgg
     6601 tttagacaag gtttgcgaca tcttgatgga cggaagtgag attgttaaga ttgcggagtc
     6661 gatttcagaa gatgttgagc aagaagtgat tgatgcgaca ggattagtcg ttgctcctgg
     6721 tttggtcgat gttcatgtgc attttcggga gccaggtcag acccataaag aagatattca
     6781 tacaggagct ctttctgcag cagcgggtgg ttttacttct gttgtcatga tggctaacac
     6841 taatccgacg atttcaaatg ttgaaacctt aaaagaagta ttggattccg ctaaaaaaga
     6901 agctattcac atttatagtg tggcaaccat tacagatcat ttcgacgggc aaaatctgac
     6961 cgattttcct gctttgctgg aagctggagc ggtggccttt tcggacgacg gtattccttt
     7021 gacaaatgct ggcgtggtta gaaaagctat gaaattggcc aaagagcagg gctgtctcat
     7081 cagtctgcat gaagaagacc ctgacctgaa tggtgtcttg ggactcaacg agcaagtggc
     7141 tgaaaaacat tttcatgttt gtggagcaac aggcgtagca gaatacagca tggtcgctcg
     7201 cgatgtcatg attgcctatg aaacaggtgc gcgtgttcat atccagcatc tatccaaagc
     7261 cgagtcggtc aaggtggttg aatttgttca aggtctcgga gcaaacgtca cggcagaagt
     7321 agcaccccaa catttttcac gaactgagga cttacttcta ataaaaggtg ccaatgctaa
     7381 aatgaatccg ccactacgat tagaaagtga tcgcttggct gtgattgatg ggttgaaatc
     7441 tggtgttatc tctgtcattg cgacggacca tgcacctcat catgcagatg agaaaaatgt
     7501 agaggacctt acgcaagctc cgtcaggtat gacaggttta gaaacctcac tttcattagg
     7561 tctaactcat ctggtagaag atggacacct cactctcttg caattgctgg agaagatgac
     7621 tattaaccct gccaaactct acggccttga tgctggctat cttgctgaaa atggcccagc
     7681 tgatcttgtt atttttgacc caaatgcaaa tcggttggtc acagcggatt ttgcctcgaa
     7741 gtctgctaat tctccgtttg ttggtgatag tctgaaagga caagtccttt acaccattgc
     7801 aaatggacaa atagtatttg gtaaatagga aatgagcgga ttagatagct aattcgctta
     7861 tttcgaacct ttttgacatg taagcgattt taatgttttt gttttttgat aaaaagtgta
     7921 taatagagat ataaaaaatg ccgaagaaag gtctatttat gaaaaagaaa aaaatcttgt
     7981 tgcctgtaat gtccacactc ttgttggctc catttgtttt agctcaacaa gtacaagctg
     8041 ctgagacaac gactgcagct accacaacca atcagccagc aacgacagat gcaactgcta
     8101 cggtaccagc aacatctgtt gaaaatgtag caacggagga aactgttgtc cctgctgcgg
     8161 aagaaacagt agaggcagtc attatccaca caaacgacgt tcacggtcgc attcttgaag
     8221 aaaagaatgt tatcggtgac gctaaggctg cggcagtcat tgaagaagaa cgtgccaaag
     8281 tagaaaatac aattgtagta gatgctggtg atgccttcca aggacttcca atttccaact
     8341 ctacaaaagg tgaagaccgc gccaatatca tgaaccaagt cggctatgat gcaatggctg
     8401 ttggtaacca tgaatttgac tttgggatgg atcaagcaat caagtacaag gaaaccttga
     8461 acttcccgct attgagtgct aacacttacg ttaatggcgc tcgtgttttt gaagcttcaa
     8521 ctattgtcga taaaactcca actgttgtag gcgatgaatt tgtagttatc ggtgtaacaa
     8581 cacctgaaac tgctacaaaa acccatccga agaatgttga gggagtaacg tttaccgacc
     8641 cagtcacaga agtcaataaa gtgattgacg aagtggaagc acgtgctcta gcagataatc
     8701 gtgtttacaa gaactatatc attctagctc acctaggtgt cgattctaca acacctgttg
     8761 aatggagagg ttcaactctt gctgaagcac tttctaaaaa tagtaaatta gccggtaaac
     8821 gtgttattgt tatcgatggt cattcccaca cggtagaagc gactacctat ggagataacg
     8881 ttacttataa tcaaacaggc tcttacttga acaatattgg taaagtaacc ttgaaatccg
     8941 ataaattatt gggtgaagct agcttgattt ctgccgcaga tactaagaac gtgacgccaa
     9001 atgctaaaat cgcagccttg gttgatgaaa ttaaagcaaa atatgaagct gaaaatgctc
     9061 aagtagttat tgaaaataac ccagtggaat taaacggaga ccgctcaaac gtgcgtgttc
     9121 gtgaaaccaa cttggggaat gcagtgacgg atgcgattta tgcctatggt caaacaggat
     9181 tttcaaacaa aactagcctt gctgtgacta acggtggtgg tctacgtgca acaattgcta
     9241 aagatcagcc tgttacaaaa ggtgatatta ttgcagtctt gccatttggt aacattgttt
     9301 ctcaaatcac tgtgactggt cagcaaattt atgatatgtt taccaagtct ttatcatcta
     9361 cattgcaagt gaatccagaa actggcgaga tgcttttaga tgaaaatggc atgccgctct
     9421 ttgaagctag tggtggattc ctacacattt caggagcaaa tgtattctac gatccaactc
     9481 ttcctgtaga agaacgtgtt cttcttatcg gtattcttaa tccagagact ggcgaatatg
     9541 acgccttgga tcttgaaaaa acgtactatt tagcaacaaa tgacttcctt gctgctggtg
     9601 gtgatggcta cacaatgctt ggcggagcac gtgaagaagg tccttcaatg gacagcgtct
     9661 ttgctgaata cctaaagaca gctgacttat cagcttatga ggttgtcaac ccatattcac
     9721 gtatcattcc tgtaaattca agcattgata cggatgaaga tggctaccca gactttatcg
     9781 aaattttatt ggatactgat ccagaaaatc cagcctcaaa tccagaaact gttccagccg
     9841 aaaatacgga ttcaccatct aatcaagtac aaaatacttc agcaacagac aagaaagctc
     9901 cagttgattc tccgaaagta ggagataaaa aaacagaagt agcaagtcca gtaaaaacta
     9961 caaaagcagg agtcttgcca aatactggtg atcagatgaa tctgacgctc agcctgtttg
    10021 gtttaggtct tgcaggactg gccatggcag taggtcgtag aaaagaaaat taatcaatca
    10081 tctgaaaaca gggtcttcgg actctgtttt tgactggagg aaacatgcaa actgtatttc
    10141 aatatcaaaa agagggggat cgtgagcaga ttagttctta cgttctgctt agcaactccc
    10201 cacgtcgtaa acaattattg ggatttttac aaccacaaat cgcatcagtt gaagtggatg
    10261 agcgtggtat cgaagaacat tttatgaaac aattcgctac agatgatttt ctcactcgag
    10321 ctgcaaaaac ctgttgtgaa atttccaaag ccaaatcgga catggatttg gtaactggtc
    10381 atctctacat ttctgcggat acaatcgtcg tgtcagatgg gcaaattttt aacaaacctc
    10441 aagatttgac agaagctgaa atcatgttac gttcctattt tggaaagagt catcacgttg
    10501 taacatctgt ctgcctacgg acaagacact cactggatgt tttttatacg gttgcacaaa
    10561 ttgattttgt cgactattat ccagcccttg aagaggttat tcaatcatat atccgtgaaa
    10621 agcagccact cgacaaggca ggtgcatacg gtattcagga gctggatcca cgctttgtgt
    10681 cgggcatttc aggggatatt cacaccatta ttggtctacc tgtagccgaa gtttcccgca
    10741 ggattttttc tgaagaaggt tttgaaaaat agcagagctc aatagctagt ttgtggtata
    10801 atagtggtcg aaaaggagag tttatgaccg tcgacattga aagatacaag caattggccc
    10861 agcagaagca aggagaacat cgaaaatttc tagcaaattt gaagaaaaaa gcacctaaaa
    10921 atttggatag aattgttcaa gatattcatg ccgaagtatt ttctgaaatc gactgtacag
    10981 agtgtgccaa ctgttgtaaa acgttgggac cactctttac agaagcagat attacccgaa
    11041 ttgccaagca tttacgcatg aaacttccag tttttgagga tatgtatttg cgtgtggatg
    11101 aggacggaga taaggtattt caatccatgc cctgtccctt ccttggaggc gataatctat
    11161 gtagtatcta tgatgctcgt cccaaagcct gtcgagaatt tccgcatacc gaccgcaaga
    11221 agatttatca aatcaacaat ttaacaataa aaaatactct gatttgtccc gcagcctatc
    11281 tctttgtcga aaagttacgg gagagaattt aagaggaaca agtaagacaa aatattgatt
    11341 ttctgctata ataataaaaa aacaagccgt ttttacggct tttttcaatg aatcatattt
    11401 aggaggaccc catggcaaca attcaatggt ttccgggcca catgtcaaaa gctcgcaggc
    11461 aggtgcagga gaacatcaag cacgttgatt tcgtgaccat tttggtcgat gcccgtctgc
    11521 ccctatccag ccaaaacccc atgttgacta agattgtcgg tgacaagccc aagctcatga
    11581 ttctcaacaa ggtcgactta gcagaccctg ttcgtaccaa agaatggcag agctactttg
    11641 aaggtcaagg catccgtacc cttgccatca actcaaaaga gcaagcgacg gtgaaaaagg
    11701 tgaccgacgc agccaagagt ctgatgaaag acaagattga acgcctccgc gagagaggta
    11761 ttcaaaaaga aaccttgcgg accatgatta tcggtattcc aaacgctgga aaatccactc
    11821 ttatgaaccg tctggctgga aagaaaattg ccgttgttgg caacaaacca ggtgtgacga
    11881 aaggccaaca gtggctcaag tccaataagg accttgaaat ccttgataca ccaggtattc
    11941 tctggcctaa gtttgaagac caggaagtcg gtctcaagtt ggctctgaca ggagctatca
    12001 aggaccaact tttgcctatg gacgaagtca ccatttttgg tttggactat ttcaaggcca
    12061 actatccaga acgtctacaa gagcggttca agggcatgga tttggagcag gaaacgcctg
    12121 aactcatcat ggactggacc aagaaattgg gctttcgtga tgattatgac cgtttttaca
    12181 acctctttgt caaggacgtt cgggacggtc gcttgggtac ttatacatta gacagggtga
    12241 gtgacttaga tggcaacgat taaggaagtg actactctgc tagctcaggt ggacagtctg
    12301 gacagtcctg tctgggcgga actatctcag gatgagcgag caggggtcca ggctgccatc
    12361 aagaaacgcc gtaaggagct ggataaagaa gtagcagaag atgcccgctt agaagctatg
    12421 ctattttacg aaaaaaacct ttatgaaaat ggggtggagt tcatcgctgg tatcgacgaa
    12481 gtcggccggg ggcctctagc aggtcctgtg gtggcagcgg cggtcatctt gcctaaaggt
    12541 tgtaaaatcc gctacctcaa cgactccaag aaaatcccta agtccaagca tgaagcaatc
    12601 taccaagaag tcatggagcg agcggtggca gtcggtgtgg gaataaaaga tgcagctgtc
    12661 attgaccagg tcaatatcta cgaggcgacc aagttagcta tgttggaggc ttttgggaaa
    12721 ttaagccaga aacctgacca cttgctcata gacgccatga agttggatac gcccatacca
    12781 caaacttcta tcatcaaggg agatgccaat agcctatcta tcgcagctgc ctctatcgtg
    12841 gccaaggtga cgcgggataa gatgatggcg gactatgaca aggagttctc aggctacggc
    12901 ttcgccaaga atgctggtta tggaacggca gagcatttgg aaggcttgaa caagttaggc
    12961 atcacgccta ttcaccgtaa gacctttgag cctattaagt ctatggtaac aggagggaaa
    13021 tcgtcgtgac ggtctttttc tggatttttc tagcttccat aggcttattt ggtctcctat
    13081 atttctggga gcgacggtcg atttttatct cactgtttgc cttgaatatc ctcgtctggg
    13141 ccttggcatg gattatctca acaggcattc tcgaaaacaa tgaaatcttg cgcttgctgg
    13201 ctatagcagt ggctatggtg ctctttttag ccttcttaag tggtccattt gtcttgcttt
    13261 tcacacttta tctaaatggt tttcagattt tggagagaga aggggttcgc ttccataatt
    13321 tcctatccat gggactggcg gtagccctga ctttctatct cttcatcgct ccctttgtgg
    13381 ttcaatccct gtctggtatt agtttgttaa acatggtgtt tgtctatgtt ggatttttag
    13441 tgtcttatgc cattatcatc agcatgctct ataccacgtc tagctttgtc aattttgtca
    13501 atctcttccc aggaaagctt gattatgtag tggtcttagg tgctggcttg attggtgaca
    13561 aggtaacgcc acttttggct tcgcggattg acaaaggcat agcgatttat cagaagcagc
    13621 ctggcagtaa gctcatcatg tcaggcggac aaggtcctga tgaactcata gctgaaggtc
    13681 aagctatggc aaattatgcc ttggaacagg gtatccctgc ggaggacatc attattgaaa
    13741 accaatcgac caacacagaa gaaaatttga aattttccta tgccctgatg aaacctggca
    13801 gtcgatttgc acttgtaacc aattactatc acgttttcag agctctgcta ttggcacgac
    13861 aattgaaaat caaatgtatc ggctacggcg caaaaaccaa attttacttt agcctcaatg
    13921 cctttattcg ggaatttgta ggctatgtag tcatgagccg aaagacgcat ttggtctttt
    13981 tgagcatcgt gtcagccctt tacctgatcg gagtgatcat cagtttaatg cattaaaaac
    14041 agcctctagg tgactagaag ctgttttctt ataacataaa gtagacaatg gcgatatatt
    14101 gaagtgccga agctagtagg ataaagagat gccaaatcat gtgaaagtag ggctttttct
    14161 tggcgtagaa gagggctcca atagtataag ataatccacc agccagcatg agaatgccaa
    14221 atgccattcc agtcttttga agaatggctg gcaagataaa gacaactagc cagcccatga
    14281 aaagatagag gaagaggctg aatttttcgt ttattttttt agcaaaaatt ttatagagta
    14341 taccgaaaat agtcaatccc cattgcaaac ctacaatcag ataacctagc caaccaccga
    14401 ccaaggatag ggcaacaggt gtgtagcttc cagcgatagc aatgtaaatc atgctatggt
    14461 cgataatcct caggatgtat ttgtgagtag aagcataggg catggagtgg tagatggaag
    14521 aggataggaa catgagaaat aggctgatga caaagatgga cataccaatc acagcggtca
    14581 ggttataatc ttgataggaa tgaatagcag taacggggag caagaccaac ataagcaggg
    14641 ctccgactgc atgtgtgaca ctgttagcaa cctcctctcc aaaggatagt tgcaggctca
    14701 atttcaaact aggattcatg gtgactcctt tctaactcca tagtgagttg acgggttttg
    14761 tagtaaagtt tgacagattg acaagcgtag cgaatgatgt caggggtttc ttcattttcc
    14821 tcgtttcgca tgcagtcaac aaaatgattg tagagtgttt ctgaatgact cgattggaga
    14881 agaagatgta aggtctgact gatttcttga atagaaaaga cattttttaa gatagtcaag
    14941 gcaatcaagc gggcaacttg ctgtttttga tattttttct taacaggttt ttcaatctgt
    15001 ttatgtttga catagttatt gatcatggca gcagtcaata ctcttcgaaa atcaacatta
    15061 tccgttgtca acttgccttg atgaacccca gttctatcat cggtttcgtt tcctaggcta
    15121 ctgttgattt tcattgagta taaacttttc tgttcaaggc tttcctgaga attgactact
    15181 tgattaacat acagcagaac ttggtccaaa tacaaatcta aattaggtaa ttcatgccag
    15241 taggggatgg tctgtttcat gattatccac tttcttttat ctagtaatga taactagatt
    15301 gtacgatatc caatattaaa agtcaagaaa aaaccttctg gacccaaaat cacagaaggt
    15361 tagttgctta tggttggata atattttctg gtaaagccat cttatagagt gaaaaggcac
    15421 catctaggtt tttaacacca aagccctttt ctttcaagat tcgttcggca atataagaac
    15481 gaagtccact atggcagatg acaatgtatt cttttgaagc atccagttct ccaactcgct
    15541 cacggagttg gtccaaagga atgtgaatga attctctgaa ttgcccattt gcgacctcac
    15601 caggataata acctgcatgg tcttttccag ttgtatgaat aatggcatgc tcatagccga
    15661 gtgattgaac agtacgttcg cttaaaccag ttgaggcggc agctaggtca aagactttaa
    15721 cgatagctgt tccaatagaa cctttgtttt ttctatcaag tccagcgata acatccgcca
    15781 cctgtctgcc ttgtcggttg gcaggagaag ccagagaaat caaggcatct tgacctgtaa
    15841 tttcttgttt aacaacaata gcatcaccaa cagcataaat attattctga ctggtttggt
    15901 agtttttatc tacgagaata ccaccacgga gacccagttc aattccagtt tttttagcca
    15961 gttggctgtc gggagcaact ccgactgaga gaatggtcac atcagatgac aaggtttgtc
    16021 cgttagacaa ttctagaacc tgtccttttt catgaaaagc agtaacagac tgcccagtga
    16081 taacctcgat acctttattg gttagctctg cttccacata tcgtgccatt tctaagtcaa
    16141 aagtaggtaa aacatgggga gcttgttcga caagcgtgac cttccagcct tttaaagcta
    16201 agttttccgc catttccaga ccgataaaac ctgcaccaat taccacaaca tgaccagact
    16261 tgatctggtc tagtttaatc ataatcttgt ccaaatcagg tacgttccga agagtaaaga
    16321 gattgtttgc ttcttcaata ccagatagat ttggaatgac aggcttggcg ccgggtgata
    16381 agattagttt gtcgtagctt tcaatcaact caccagtagg cgttttgact gttacagttt
    16441 gctgctcagc atcgatgcta ataacttcat ggaaggggcg tacatctaga ttaaagcgtt
    16501 gtttcaaact ttctggcgtt tggaggagca agctatcatg ttctgctatt tcaccagaaa
    16561 tgtaataagg taaaccgcag ttggcaaagg aaacataagg tcctttttcg aatacgatga
    16621 tttcagcatc ttccataaga cgacgcagac gagtagctgc tgacatacca ccagcgacac
    16681 cacctacaat aattattttc atgctattcc tcctgtccag gcattcatac cgcctttaat
    16741 gttgattgct tgatagcctt gagatttaag atattctgtc gcccgttggc tacgcatgcc
    16801 agattgacag atgacaagat agttcttggt tttgtcgcct ttaaattggt caagttgact
    16861 taaaggctgg ttgatagctt gtggaatatg tccactagca aattcgtcga cttcgcgaac
    16921 atcaagcaaa atagcattcg atgattgtat cgcttgttct acatcagtta tcggaagact
    16981 atctgagttt gaaaacattc ctgaaaataa ttgtttaaac attgttactc ctttttactc
    17041 ctttttatac ccatgggggt atctaaaata tatcaaggaa ttcaaaagat gtcaaggtaa
    17101 aaaattgaca tttttcactt caagcagtac tatatagggt atgaatactg ataagaaaaa
    17161 gatgataaac cgtttgaaac gggccgaagg tcaactcaga ggcattcaga aaatgattga
    17221 agaagatcag gaatgtattg atattgtaac tcagttgagt gctgttcgtt ccagcattaa
    17281 tagtatgatg ggaatggtta ttgctcagaa ggtacaagat tgtatcactc atccatctga
    17341 aaaccctgaa gaacaagaag ctcgtcttgc tcaagctatc aatttaatca taaaaaaata
    17401 ggagcagaag tatgccaaca gaaaaagaaa agatgatagc tgggcaattt tatatggcag
    17461 cagatgctga attgagagag atgcgaacct ttgcccgcca acagatgaaa aaatttaacg
    17521 aagaactaga tggacaagcc cgctctgagc gattgaaaaa ctggttggga gctacaggtg
    17581 agcggattta cgtggagcca aatttctact gtgactacgg tagcaatatt catgttggtg
    17641 aggattttta cgcaaatttt aactgtacga tgttggatgt ttgtcccatt accattggga
    17701 aaaatgccat gcttggtccc aatgtacagt tgctaactcc acttcatcca ctagatcctg
    17761 atgaacgaaa ttctggtttg gaatatggct ctccaattac cattggtgat aatttctggg
    17821 ctggtggtgg tgtgacaatc ttacctggcg tgaccttggg aaacaatgta gttgttggtg
    17881 ctggttccgt tgtgaccaag tcttttggtg ataatgtcgt tttggctggc aatcctgcgc
    17941 gtgttatcaa agaaatacct aaaaaataat tcttcttcgg gagaattttt tctttgcctt
    18001 gcgaatagac taagtgaggt gaagaaaatg aataattttg aattgtttaa atggaaaaaa
    18061 gcgggtttga ccaatcttaa tgtgaacaaa gttttggcct atcaagaaaa acacggtaaa
    18121 aaattgacct tgcgaaatgt cgctgtagtg tctgaatgta aaaatccagt tctatttatg
    18181 gaaaattata agaatctaga tacaaaagct tgtcgcgagg aatttaataa gtatccatca
    18241 ttttcaattt tagatgacat ctatcctttg gcgctcaaac agatttacaa tccacctgta
    18301 cttttgtttt atcaagggga tttagaattg ctagaaaaat caaagctggc agttgttggt
    18361 acacgaaatg ccagtaaaaa tggcgttcag tctgttcaga agattatcaa agaactcaac
    18421 aatcgctttg tcattgtcag tggtttggca agaggaattg atacagctgc ccatattgct
    18481 agcctgaaaa atggtggaca aaccattgcc gttattggaa caggtttgga taagatatat
    18541 cccaaagaaa atagagaatt acagacctac atcggaaaac atcatttggt tctgactgaa
    18601 tatggaccag gtacagaccc tctcaagtac catttcccag aacgcaatcg cataatagct
    18661 ggtttggtgg aaggattggt agtctgtgaa gctaagatgc ggtctggtag cctcattacc
    18721 tgtgaacgtg cccttggaag aaggaagaga agtctatgct attccaggtt ccattatgga
    18781 cggaaaatca gatggttgtc atcatctgat tcaagaggga gcaaagtgcg ttacatccgg
    18841 cttggacatc atttcagagt atcaatttta aaacaagtct tcctatagga aaataaatat
    18901 cttgacactg actgaaaaat agtatattct ttgtgaggtt aaaaatattt gtaaggtata
    18961 agaatggcta caaaaacagt tagtaagaaa aaaacaacaa ccaagaaaaa tctcgttatt
    19021 gtagagtcgc ctgctaaggc aaaaacaatc gaaaaatatc ttggtaaaaa ttataaggtc
    19081 gttgcttcag tcgggcatat tcgagatttg aagaaatcta gtatgtctat tgattttgat
    19141 aacaactatg cacctgagta catcaacata cgtggaaaag gaccactcat caattctttg
    19201 aaaaaagaag caaaaaatgc taagcaagtc tttctcgcga gtgacccgga ccgcgaagga
    19261 gaagcaattt cttggcattt ggctcacatt ttgggattgg acgcaaacga taaaaaccgt
    19321 gttgtcttta atgaaattac aaaagatgca gtaaaaaatg cctttcagga gccacgtgct
    19381 attaacctag acttggtaga tgcccagcaa gctcgtcgcg tcttagaccg tattgtaggg
    19441 tactccatat cacctatttt atggaagaaa gtcaaaaaag gtctgtcagc aggacgtgtt
    19501 caatcggttg ctctcaaatt aataatcgac cgtgaaaatg aaatcagcaa tttcaaacca
    19561 gaagaatatt ggacaattga tgcaaccttc aaaaaaggga gcaagaaatt ccaggcttca
    19621 ttctacggta tagatggaaa gaaaactaaa attgaaaaca atgagcaggt taaagaaatt
    19681 ctcgcccgac ttgatggaga tgatttctta gtagaacagg ttgagcgtaa ggaacgcaaa
    19741 cgaaatgcac ctctacctta cacaacttct actatgcaga tggatgcggc taataaaatc
    19801 aatttccgta ctcgtaaaac catgatggtt gcccaacaac tttatgaggg tgtcagtctt
    19861 ggcacaggtg gtacccaagg tttgattacc tatatgcgta cggattcaac acgtattagc
    19921 cctgttgcac aagcacaagc tgctgacttt atcacggagc gttttggtgc tacctattca
    19981 aagcatggta ataaagtaaa aaatgccagt ggtgcacaag atgcccacga agccattcgt
    20041 ccatcaaatg ttaacttaac acctgaatca attgcaaaat atctggacaa ggaccagttg
    20101 cgactatata cactgatttg gaatcgtttt gtcgcaagtc agatggctgt agcagttttt
    20161 gataccatga gtgttcgttt gggtcaaaat ggtattgtct ttgctgctaa tggtagccaa
    20221 gtaaaattcg atggttatat ggctgtctat aacgacgctg ataaaaataa aatgttgcca
    20281 gatatggaac aaggtgacac ggtggtgcgc gcgtcaacaa atccagaaca acactttact
    20341 cagccaccag ctcgctactc tgaagcaacc ttaattaaaa cattagaaga gaatggtgta
    20401 ggtcgcccgt caacctatgc accaacgatt gaaaccattc aaaaacgcta ttatgttaag
    20461 cttgcggcta agcgatttga accaactgaa ctcggagaaa tcgttaataa gctgattgtt
    20521 gaatttttcc cagatattgt caatgtcaaa tttacagccg atatggagca aaaattggat
    20581 gatgtagaaa tcgggaaaga gcagtggcag aaggtcattg acggtttcta tcagccattc
    20641 aaggtagaat tatctaaggc agaagaacag atggaaaaaa tccaaattaa ggatgaacca
    20701 gctggctttg actgtgatgt ttgtggacat gaaatggtta ttaaattagg tcgctttgga
    20761 aaattctatg catgcagcaa tttcccagac tgtcgcaata ccaagcaaat cactaaagaa
    20821 atcggtgtga cttgtccagt ttgccaaaaa gggcaagtga ttgaacgcaa gagtaaacgc
    20881 aatcgtcttt tctatggttg cgatcgctac ccagagtgtg aatttacttc ttgggacaag
    20941 ccagtcgggc gttcttgtcc gaaatgcgac cactatctcg ttgagaaaaa agttcgtggt
    21001 ggtggtaaac aagttgtctg tccaaatggt gactacgaag aagacaagat taaataagat
    21061 taaactgcta ttctcaaggg aatggcagtt gttttttaga gtcatgttta gtttatctta
    21121 gcttacttcg acaagcgagg aaacttcgtc tccttatttt caactttaaa cgaggctggt
    21181 caaaaagtcc aaagtcactt ctcagtgcag tggttgattg ggtttaacag gccagtggag
    21241 tgaaactgtt cagtgaactg tttcagcctg agcttagaaa tgaaaaaatc gaggtaaaaa
    21301 ggttggagat aagatttgcg aagcaaatca cagcaatttg tgtttcacat tccaagtctg
    21361 acctctacaa ctaaaacgaa ctaaacggca atactgcttg aaaaaatgtt taaaaaatta
    21421 aaaaaatagg agaaaagtct tgcattattg aaaatactgt gttatgataa ttgaggtttg
    21481 aaaaaactga cctaagacag taggggagct ggactcataa acatcctacc gaggcacaaa
    21541 acgattattg agataaacgt atttgtactt tcgtgtctag gtttaggtgc gatttttttg
    21601 tgcctagccc aaaataaaaa cggaggtaaa aaaatgagtg aagctattat cgctaaaaaa
    21661 gcggaattag taaatgccgt tgctgagcaa atgaaagctg caacatctat cgttgttgta
    21721 gacgctcgtg gtttgacagt agaacaagat acagttcttc gtcgtaactt gcgtggtgca
    21781 gaagttgagt acaaagttat caaaaactca atcttgcgtc gtgctgctga gcaagctggt
    21841 cttgaaggtc ttgcagaatt gtttgtaggt ccatctgcag ttgcattctc aaacgatgca
    21901 gttgctccag ctaaaacaat ttacgatttc gcgaaaactg ctgatgctct tgaaatcaaa
    21961 ggtggtgctg tagaaggtaa agtttcttct aaagaagaaa tcgaagcact tgctacattg
    22021 ccaaaccgcg aaggcatgct ttctatgttg ctttctgtac ttcaagcgcc agttcgcaac
    22081 gttgcatacg ctgtcaaagc tgttgcagaa aaagaagacg cagcttaatg cgtcagagtg
    22141 tagctgctta gtgctacaaa ctatttaaaa acctaaattg gaggaaaatc acaatggcat
    22201 tgaacattga aaacattatt gctgaaatta aagaagctac tatccttgag cttaacgacc
    22261 ttgttaaagc tatcgaagaa gaatttggtg taactgcggc tgctcctgta gctgttgctg
    22321 cagctggtgg tgctgctgaa gaagctaaag attcattcga cgttgaattg acatctgctg
    22381 gcgacaaaaa agttggcgtt atcaaagttg tacgtgaaat cactggtctt ggtcttaaag
    22441 aagctaaaga gcttgttgac ggtgcaccag ctatggttaa agaagacgtt gcaactgcag
    22501 aagctgaaga aatcaaagct aaattggaag aagcaggcgc ttcagttact cttaaataat
    22561 agagtttcca atcaaaataa aaacctatca cttaatgtgg taggtttttt cgttctattg
    22621 ttgcaaacgt tttcgttgtg gggtataata taaaaaatga tgtctaaaga ttaggagaaa
    22681 gacatgaaaa gttacaaaaa ctatatcttc gatttttatg gtacattggt tgatattcgt
    22741 acagatgaga ataaactaga ggtctggaat cagctaacac agatttacaa tgcttttggt
    22801 tgttcctatc gaccgcgcca gttgaaaaat gcctatcatc gttttgtaga agaggcagag
    22861 agatttctcg cggaaacagt gagttatcag tatgtcgaaa ttgatttaga aacactcttc
    22921 attcgcctat taacggatgc accaaatgaa aaccaaagta ccaataagcc gactgattta
    22981 gagacttttg ggcaagtagt agccacgatt ttccgcgtgc tttcacgtga aaagttagag
    23041 gcttatgaaa ataccctaac tagtctacag acattaaagg atagagaagc gcgattattt
    23101 attctctcca atgctcaacg aatttttact caggcagaaa ttgaacagac aggttgtgct
    23161 gatttgatgg aaaaaattta tatctcctct gactttaaga tgaagaagcc tgaaccagca
    23221 tttcttcaac tggttttaga ggaaaataat cttgatgtta aggaaacggt tatggttggt
    23281 aatgatttga catccgatat agctattgct catgaattgg gaatggattc cattttgctg
    23341 aatactttcc cgtatagtca ggaagaaatc gactcttata ggagacttgg ttggaatttt
    23401 gaggttgttg gagatatagc ggagctattg taaataagcg atagaacagt aaagaa
//
LOCUS       DASGCC010000013        23135 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.013, whole genome shotgun sequence.
ACCESSION   DASGCC010000013 DASGCC010000000
VERSION     DASGCC010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 23135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23135
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.013"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            80..931
                     /locus_tag="U1404_000353"
     CDS             80..931
                     /locus_tag="U1404_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM5347337.1"
                     /translation="MKLKKLFSLATAALSVGVLVACGNSSSSSDSSATTVRVGVMSLS
                     DSEQARWDKVQEILGDEVKLEFTQFTDYSQPNKAVAENEVDINAFQHYNFLNNWNQEN
                     GEDLVAIADTYIAPIRLYSGTADGKNKYTKVEEIPDGAEIAVPNDPTNESRALYLLQA
                     AGLIKVGVSGTELATIADITENKKNLKITELDASQTASSLSSVDAAVVNNTFVLEAGL
                     DYKNALYKEQKDENSKQWYNLIAARSDWEKSEQAAAIKKIIEAYHTDEVKKVIEETSD
                     GMDEPVW"
     gene            1088..2455
                     /locus_tag="U1404_000354"
     CDS             1088..2455
                     /locus_tag="U1404_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEM5347338.1"
                     /translation="MADSKVQAFENDAIIQNYFEKLKVLISKKSIFAQQIGLLDVATY
                     LKDMFEEAGADVVLDDSYAAPFVMATFKASVPDAKTLIFYNHYDTVPADADQVWEKGN
                     PFELTISDGYIYGRGVDDDKGHITARLSALKKYQARQNGDLPVNVIFIMEGAEESASV
                     DLDKYLSKYKEYLIGADLLVWEQGHRNSLHQLEIAGGNKGIVTFDLQVKSADLDIHSS
                     YGGVIDSASWYLLSALQSMRAADGEILVDGIYEQVQEPNERELALVEEFALATSQSMT
                     DIYGLTLPTLVEDRREFLKRLYFEPSITIEGLSTGYLGQGVKTIIPAQASAKMEVRLV
                     PGLEPHDVLDKIRQHLDKHGFDKVELVFTLGEMSYRSDMSHPAIVNVIELAKKLTPEG
                     VAVLPTSPGTGPMHTVFHALGVPIAGFGLGNANSRDHAGDENVSIADYYSHVELVEEL
                     IASYE"
     gene            2448..3512
                     /locus_tag="U1404_000355"
     CDS             2448..3512
                     /locus_tag="U1404_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM5347339.1"
                     /translation="MSKEMIKLDNIDVTFQQKKRTIEAVKDVTIHINQGDIYGIVGYS
                     GAGKSTLVRVINLLQVPTAGKITIDEDVIYEGEKVTLTPTQLRSKRREIGMIFQHFNL
                     MAQMTAEENVAFALKHSGLSKEEKKEKVAKLLDLVGLSDRAENYPAQLSGGQKQRVAI
                     ARALANDPKILISDESTSALDPKTTKQILALLQELNEKLGLTIVMITHEMQIVKDICN
                     RVAVMQDGRLIEEGSVLEIFSHPKEELTQDFIKTATGIDEALVKIYQQDIVKNLPENS
                     ILVQLKYAGSNTDTAIVNDLYKFYQVSANILYGNIEILDHTPVGEMVVILSGEPGQLH
                     RAIEAVTEARVEVTILKGAN"
     gene            3513..4205
                     /locus_tag="U1404_000356"
     CDS             3513..4205
                     /locus_tag="U1404_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004255001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5347340.1"
                     /translation="MLEWIQTNFPDIYKLGWDGQTGWLTHFNLTLYMTFVSFAFGGFM
                     GLVSGLFLVLTGPRGVIANKTAYWILDKVASIFRAIPFIILLAAIAPFTKIIVGKTIG
                     TEAALVPLALSVFPFFARQVEVVLSELDRGVIEAAQASGATFWDIVLVYLREGLPDLI
                     RVTTFALVSLVGYTAMAGAIGAGGLGQVALSYGYLRYNNDVTFLATLLILVIIFVIQF
                     IGDFLTRKISHR"
     gene            4387..5091
                     /locus_tag="U1404_000357"
     CDS             4387..5091
                     /locus_tag="U1404_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B3/4 domain-containing protein"
                     /protein_id="HEM5347341.1"
                     /translation="MSQFVVDSSFWSLFPDAKIGVLLLKDYKTPAQSPDELVKLLEES
                     NGIAQKFLTEDTFSENEVIRTYRQAYQKFKTKKGASSSIEALLKRSTSDRPVTTISPL
                     VDIYNAASLRFGLPCGAEDLDTFVGNLQLTVTEGGDEFYLIGDETNNPTLPGEVCYKD
                     DKGAVCRCFNWRDGERTMITDETKNAFLVMELVNSDRVEDLENALDFISQQAETFLGV
                     VPEKYLLDCDRPGIAL"
     gene            5358..5837
                     /locus_tag="U1404_000358"
     CDS             5358..5837
                     /locus_tag="U1404_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 family protein"
                     /protein_id="HEM5347342.1"
                     /translation="MWFFLSADRVFLVFHLKVKNSYYKERRPMFTLEAINHGHEQFTG
                     PDFPKLIAYFKDLGMVENIVDIQSGQVTYRSQTGQTLEKTGYQVTIPVSDQANLDQFV
                     TILRNHQAGQTDFPTFCQETAEAGVYKWVIDLEAMTCSYLDQAEQAVFVEAVPSVEN"
     gene            6043..6960
                     /gene="glyQ"
                     /locus_tag="U1404_000359"
     CDS             6043..6960
                     /gene="glyQ"
                     /locus_tag="U1404_000359"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018163989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEM5347343.1"
                     /translation="MSKKLTFQEIILTLQQFWNEQGCLLMQAYDTEKGAGTMSPYTFL
                     RAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLER
                     LGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAE
                     VTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEVSDQDMLLENFT
                     KFEKEAERALEEGLVHPAFDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVA
                     KTFVAERKKLGFPLLDEATRAELLKEDAE"
     gene            6960..8996
                     /locus_tag="U1404_000360"
     CDS             6960..8996
                     /locus_tag="U1404_000360"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEM5347344.1"
                     /translation="MTKNLLVELGLEEIPAYIVTPSMHQLRDRMATFLTDNRLAFDSI
                     DVFSTPRRLAVRVRGLADQQTDLTEDFKGPAKKIALDADGNFTKAAEGFVRGKGLTTA
                     DIEFREIKGEEYVYVTKHEAGQPAKAVLAGIPEVLKAMTFPVSMNWASNKFAYIRPVH
                     TLTVLLDDEALDMDFLDITSGRISRGHRFLGNETEIASADSYEADLRAQFVITDPAER
                     QNMIVEQIKAIEDKHNVTVEIDEDLLNEVLNLVEYPTAFMGSFDTKYLEVPEEVLVTS
                     MKNHQRYFVVRDKAGKLLPNFISVRNGNDQYLDNVIKGNEKVLVARLEDGEFFWREDQ
                     KLKIADLVERLKVVTFHEKIGSLYEHMERTKVIAEKLADLAGLSAGEKADVARAADIY
                     KFDLLTGMVGEFDELQGIMGEKYALLAGEKPAVAAAIREHYLPNSAEGELPESKVGAV
                     LALADKFDTLLSFFSVGLIPSGSNDPYALRRATQGIVRILEAFGWEIPLDQLIAELYS
                     LNFASLTYDNQPAVMDFIRARVEKMMDKTIPKDIREAVLASSTFVVRLQLAASSAIFQ
                     KAKEADYKEAVENLSRVFNLAEKAEVTAIDEALFENDQEKALAAAVAGLELTEDMAGN
                     LDKLFALSPVIAAFFDNTMVMVDDAAVKANRLTLLKALADKASAVAVFNLLNSK"
     gene            9006..9263
                     /locus_tag="U1404_000361"
     CDS             9006..9263
                     /locus_tag="U1404_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 family protein"
                     /protein_id="HEM5347345.1"
                     /translation="MEQAKIDRINELARKKKAEGLTEEELQEQAALREEYIEGYRRSV
                     RAHIEGIKVVDEDGNDVTPEKLRQVQREKGLHGRSLDDPNS"
     gene            9402..9773
                     /locus_tag="U1404_000362"
     CDS             9402..9773
                     /locus_tag="U1404_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347346.1"
                     /translation="MKKLLYFLLFLTYIACAYSTIFFLPFMYFSGIVGATGVGLGLSY
                     SLHQEVKKHPEKQLSEYLPWGSKRDKIMVVTILLFSILVSFIPDVNWHRGLAILLDIS
                     YVLLWQAMLIQFLRKYYFKNA"
     gene            complement(9795..11132)
                     /locus_tag="U1404_000363"
     CDS             complement(9795..11132)
                     /locus_tag="U1404_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5347347.1"
                     /translation="MNDLTKGKPIAVILQFAIPLLIGSFFQLAYNFADSMIVGHTLGK
                     DAFASVGSTASLIFLIIGFAQGVTNGLTIISAQRFGAGDLEGLKKSFVHGLFYASLIS
                     LLLTVSALAFLKPILVLMQTPVSIIDHSHAFLTAMFGGLTFTIFYNFLSSALRSLGNS
                     KTPLLALVIACFINIGLDFFFILVMNWGVFGAGFATILAQACSVLFLIFYIIHKVPHY
                     HIGLADLKLDRGNLKKHAQLAFPMGFQASIIAIGAMTLQFMVNQLGTDAIAAQAIALR
                     TDQLAMLPMVNLGLAIATFTAQNYGAKLYDRIREGVRHSLLLSIAWAIVFAVILILGN
                     RFFSGLFLPNASQTVLDLALVYYIINGSCYWIVASLFILRSFIQGLGKGFIPTLAGFG
                     ELIFRAAVAIIGMQYFGFYGTAAANPAAWIGSIIVLIPSSIIFMKKLKAGQSI"
     gene            complement(11452..12117)
                     /locus_tag="U1404_000364"
     CDS             complement(11452..12117)
                     /locus_tag="U1404_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEM5347348.1"
                     /translation="MPNYTIGILGLGVFGTTIAKTLHNYDCNIIAIDNHEQRINHLEP
                     ILTRGIVGDITDRSLLRAAGIGNCDAVVVATGENLESSVLAVMHSKVLGVPMVIVKVK
                     GTTAKEVLLRVGADKVISPERETGISLAKQLLHRDTTSLFELEGNVSIVEFHPPVKWI
                     GKTLGELKLRQHYKLNIIGYRSGENQELNIQLTPDYVFKSDELILAVTDHNTVDHFEE
                     LTN"
     gene            complement(12129..13478)
                     /locus_tag="U1404_000365"
     CDS             complement(12129..13478)
                     /locus_tag="U1404_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEM5347349.1"
                     /translation="MSPFRIKLSPSQRIIISFLFVILTGSILLSLPISQISTSTASYW
                     DHLFTSVSMVCVTGLFTKAVAETYSTFGQIICMMLIQIGGLSLIGFIGLFALRGGRKM
                     NFINMATLQEALNRSDTKYFRNFLKSAFGFTLAVEAFGALLLSFHFVPEFGWARGLFT
                     SIFVAISAFCNAGFDNFGATSIMRYVDNPLINITLASLIIMGGLGFSVWFDLQTQIGQ
                     KRSLRKLGFHTKIVLGLTAIILTLGTLTTLLTEWNNPSTIGQLSFGHKLLASFFQTVT
                     MRTAGFASIDYTKAEPITLLLYIFQMMLGGAPGGTAGGIKITAFLTLVLYARSEILGL
                     PHTNFMGRTIDNLSIRKAFATFSVFLLMFIIGLFALALTDDRQPLLFLMFEVMSALAT
                     VGVTANLTPSLTMAGQAVIMALMFFGRIGPLSILASLSVRKLSKTESLQYAKSSMLV"
     gene            complement(13742..14281)
                     /locus_tag="U1404_000366"
     CDS             complement(13742..14281)
                     /locus_tag="U1404_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gx transporter family protein"
                     /protein_id="HEM5347350.1"
                     /translation="MNSKRQTLNFITMLAAQAVVISLIERLITPPFAFAPGAKLGLGN
                     LISLIAIFTLPTKDSLKVVALRLLISTFLGGTFSTFLYGFAGTTLSYVGMLSAKQLGP
                     NRVSPIGISILGGMLHNLGQLLVFATIARSFYVLNYLPILAFTGILSGLLVGLAATYL
                     LQKVGPLRHYHQLVLAEWK"
     gene            14464..16356
                     /locus_tag="U1404_000367"
     CDS             14464..16356
                     /locus_tag="U1404_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5347351.1"
                     /translation="MTKNIVIVGAGYAGIAAARLLGKTFKKDQDVTVTLIDKNSFHTY
                     MTELHEVAAGRVEANAIKYDLQRIFKKYPKVQLVTDKVVEIDYDKKQVVAEHQTLDFD
                     YLLLAMGGEANDFGVKGVKEHGFTLWSIEAAERLHDHMIDACYRAMREHDEAKRRALL
                     TFTVIGAGFTGIEMIGELIDWVPILAREFKLDPKEFSLKVVEATPNILAMVTEKEQVK
                     ARKYLEKKGVELVLGDGVASVQEDSLTLSSGRQIPTYTSIWTAGVQANTDASEFGIEK
                     ARAGRLVANEFMEAKGKENVYVAGDLVYFEESEGKPTPQIVQAAEQTGHTAARNIISA
                     IKGGEKHSYKGKYDGFMVSIGARYGVAFLMDKYHMSGFMAMAVKHMVNLLYFFTIRSF
                     FYMGSYVRHEFFDIQNKRNIFGGHTSGKGNLLWSVPMRVLYGSVWLYEGIKKAFGLFG
                     TTSWFGDQVVFPFPWLADPVSGASAAEAVSSASQAATAAAEAAEPIFGLSYAYGEAPM
                     AVLDKMPDWFATIMEFMMPNQEVALFMQKFMTVAEIGIGLALIAGAFVWIVSAATVAL
                     VVMFSLSGMFYWVNIWFIPAAISLMNGAGRAFGLDYWIMPWLGRFLDKKIYGKPKHIY
                     RIKYKK"
     gene            16375..17364
                     /locus_tag="U1404_000368"
     CDS             16375..17364
                     /locus_tag="U1404_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM5347352.1"
                     /translation="MVHQIWNTYPEIERGLEEVKSIILSEMMVLHPAVTSKIVEYVEA
                     PGKYLRAGLCLLFAQMTEGKISRSKLYFAAHLEVLHLATLIHDDVIDGADKRRGVTAA
                     HQQFSNRIAIYTGDYLLAYSSRLFGKGLRLLEVSRDDLDLGNDKLMETILRGELSQLL
                     NQFDANMTMKAYLKQIQGKTAFLFGLACQLGSFVPGQSRKDSSMAFRSGQALGMAFQL
                     RDDLIDYQLDVAESGKPRLQDIQNGIYTAPLLFAMREDKSIQQQLRAYIQSPTAEGLE
                     ILTDRIFATHAIAKTEKLIVSYLEKMMNFVDRIPQLSTASMQNLVAIVFSHYF"
     gene            17443..17922
                     /locus_tag="U1404_000369"
     CDS             17443..17922
                     /locus_tag="U1404_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEM5347353.1"
                     /translation="MKTTKVVLKSLVVLGAVFALAACGSKQESASTSSSTKETVVLKD
                     GTYKAESSKDDYGYKIVHTLTVKDGKISESKFDYEAEDGSLKSANEEYNKKMKDKAGV
                     SAGEAIEQLNAALVEKQELSAVEVVSGATHTSEDFKKSTEALLAAAAEGKTETVKLD"
     gene            18000..19049
                     /locus_tag="U1404_000370"
     CDS             18000..19049
                     /locus_tag="U1404_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM5347354.1"
                     /translation="MKKIASLLFVGLLMVLLVACGGKQNESLSVVKTPLTRSESLLHT
                     VVQLSIYHENQEEAMDEAVSYIKEMESLLSTNLEGADVYRINQAAGKEAVKVDERTFE
                     VIETAIDMSKESQGLFDISIGAVSNLWKIGDEDARKPSDEEIKAALPFINYKDITLDK
                     EKKTVFIKEGMTLELGAISKGYIADKVRELFASKGITTAIINLGGNVVVMGDSPTTQN
                     GWNVGVQDPDQVRGSTVGSVPGTHDSVVTSGIYERYLEVDGVKYHHILDPKTGYPVEN
                     DISGVTVFSKTSIQGDALSTTLFLLGVEKGLDFINQIDGVEAVFIDKEQGVHLSDGLK
                     ESFELTNEEYHLVNE"
     gene            19042..19998
                     /gene="menA"
                     /locus_tag="U1404_000371"
     CDS             19042..19998
                     /gene="menA"
                     /locus_tag="U1404_000371"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM5347355.1"
                     /translation="MNKSTKGLSLPVFLEFVEMKTKVASVFPMTLGILWSLYRYQAFN
                     WLNTLLFIIAVLSFDMCTTAINNSMDYHKAKDEAYRQESNVIGKFSLDFRQMIGIVLA
                     LLIFSLLVSLLLVWRTSWLLLPMGALCFLIGIFYTFGPIPLSRMPLGEVFSGVTMGFG
                     IFFLAVFIQQPDLLLTSQVSGQWMTLQFSWIKIIEIIFMSIPLVTLIANIMLANNTCD
                     LEEDIRNHRYTLVYYIGKKNALKLYFVLASLPWLLWIIYCLIGFLPIWALAGLIGVWP
                     AYKSLETFLKKQVKRETFIEAVKSFVLFALLYVVILALALIF"
     gene            complement(20306..20734)
                     /locus_tag="U1404_000372"
     CDS             complement(20306..20734)
                     /locus_tag="U1404_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HEM5347356.1"
                     /translation="MTFKSILKQLKLFDYILIGFTLVLSFLPAIFTYTHLTTDTNEAK
                     TIAYVRINGEVVDQFELSKDTPHQEKTYYPNEGQYNIIEVDGERIRVKEDNSPDQIAV
                     MTSWISQPGQLSVCLPHNLLIEIKSVGGESTDEEELILPL"
     gene            complement(20787..21134)
                     /locus_tag="U1404_000373"
     CDS             complement(20787..21134)
                     /locus_tag="U1404_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347357.1"
                     /translation="MNVDKPKFILTLIVLSYTAICSLYIHSYLTGDNPPIFILLFTML
                     PILNSDWQTSGPEANAFQKAIYLYHKPLLWFLFAGFALTFSIVFFAGKIQPLHAGFWG
                     MLAILLFFRQLKK"
     gene            complement(21124..21468)
                     /locus_tag="U1404_000374"
     CDS             complement(21124..21468)
                     /locus_tag="U1404_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5347358.1"
                     /translation="MNKPFTPKQTCRFFVLFYALFSAFFIYSYMVNEPINGSFLLMLP
                     TIQIIKSYQTAEEKRYFIIQAIFALFAMTLTYSVGIWLGHVKPLILILPAGFAAAILY
                     RIYFKKEKPDER"
     gene            complement(21481..22563)
                     /locus_tag="U1404_000375"
     CDS             complement(21481..22563)
                     /locus_tag="U1404_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
                     /protein_id="HEM5347359.1"
                     /translation="MKKETFQDKLIKRFYGIAGPLDEFRQKEAFRLGNTCFILLFWGT
                     MAITLLALALSKRYPEVVAYGYPTALLLSTLSASMYMTSKMRHSQVDSLDVEELTTKE
                     QKKFKGASIKFALYFTCGMYIWNTGFDAWMEGLNPLDHLFDLRKFLAACLVGVFMGIY
                     IEITLRKRMKKAEKLTVSSAIAKEEPKWIKNMIKRFYGIRGPLDEYRRAEADAIGGQA
                     FIYYFYFLALGNAIAYFLAYRYPLEVAAYYPMIIAFFSIILIGIVNMRTLHADLPQYD
                     MDELSPEEKQGQTLNPLVLGLGVALLSSLFAGLADLFSLQLPLLASIFHVKSLLFGGM
                     MGLFASLALSAIAYLQKLEADSVKKK"
     gene            complement(22574..22774)
                     /locus_tag="U1404_000376"
     CDS             complement(22574..22774)
                     /locus_tag="U1404_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347360.1"
                     /translation="MKKNIRQALISTLIFIPLFVLFQLWGNSGAEILHTISQAKFWLQ
                     LLIAGTIYFLGFVYILPLFDQK"
     gene            complement(22790..22978)
                     /locus_tag="U1404_000377"
     CDS             complement(22790..22978)
                     /locus_tag="U1404_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5347361.1"
                     /translation="MNRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLC
                     INLAKALQTDLNSLFWNE"
BASE COUNT         6743 a         4326 c         5510 g         6556 t
ORIGIN      
        1 ttctataaaa aaagtcaatt agtcagaaag aaaattctgt gttaagatag atacagttct
       61 aatttaagga gatcatttta tgaaattaaa aaaattgttt agtttggcaa cagctgcttt
      121 atcagtaggt gtacttgttg catgtggtaa ctcttcttca agttcagatt catctgcaac
      181 aactgttcga gtaggtgtga tgagcttgag cgattctgag caagcccgtt gggataaagt
      241 tcaagaaatt cttggtgatg aagtgaaatt ggagttcact caatttacag attactcaca
      301 accaaacaag gcagttgctg aaaatgaagt agacatcaac gcattccagc actacaactt
      361 cttgaacaac tggaatcaag aaaatggtga agacttggtt gctattgcgg atacttatat
      421 cgcaccaatc cgtctttact caggtacagc tgatggaaaa aacaagtaca ctaaagtgga
      481 agaaattcca gatggtgcag aaattgcggt tccaaacgac ccgacaaacg aaagtcgtgc
      541 tctttacctt cttcaagcag ctggtttgat caaggttggt gtatctggta cagaattggc
      601 aactattgct gatattactg aaaacaagaa aaacttgaaa attactgagt tggatgcaag
      661 ccaaacagca agttcactta gctcagttga tgcagcagtt gtaaacaata catttgtgtt
      721 ggaagctggt ttggattaca aaaatgccct ttacaaagag caaaaagatg aaaattcaaa
      781 acagtggtac aacttgattg cagctcgtag cgattgggaa aaatcagagc aagcagcagc
      841 gattaagaaa attatcgaag cctaccacac ggatgaagtg aaaaaagtta ttgaagagac
      901 ttcagacggt atggatgagc cagtttggta aaatgtaaat aggttgagga ctgggcagaa
      961 ttgttcagcc ctctatctgt ttttatagag ataagaaaaa atctcttaac caaagtcaga
     1021 aatgtgggag gatatttgat tttggttagt agatttaatt gattttcatt gagtatgagg
     1081 agaaagtatg gcagatagta aagttcaagc atttgaaaat gatgcgatta ttcaaaacta
     1141 ttttgaaaag ttgaaggtct tgatttcaaa gaaatctatt tttgctcagc agattggttt
     1201 gttggatgtg gcgacttatt tgaaagatat gtttgaagag gctggggcag atgttgtttt
     1261 agacgacagc tatgccgcac catttgtcat ggcaacgttt aaggcttcag tgccagatgc
     1321 gaaaacattg attttctaca atcattatga tacagtacct gcagatgccg atcaggtctg
     1381 ggagaagggc aaccccttcg aattgaccat ttccgatggc tatatctatg gtcgcggggt
     1441 agatgatgat aagggccata tcacagctcg tctgtcggcc ttgaaaaaat atcaagctag
     1501 acagaatggc gatttaccag tcaatgtgat ttttattatg gagggggcag aggagtcagc
     1561 ttctgtcgac ttggacaaat acctttcaaa atataaagaa tatttgattg gtgctgattt
     1621 gcttgtctgg gagcaggggc atcgcaatag cctacatcag ctagaaattg ctgggggaaa
     1681 taagggaatt gtgaccttcg atcttcaggt caaatcagct gacttggata ttcattcttc
     1741 ctatggaggt gtcattgatt cggcaagctg gtatttatta tcagcacttc aatccatgcg
     1801 ggctgcagat ggggaaattc tggtagatgg catttacgag caagtgcaag agccaaatga
     1861 gcgtgaattg gccttggtgg aagaatttgc actggctacc agtcagtcta tgactgatat
     1921 ttatggacta acccttccaa ccttggtaga agatcgtcgt gagtttctga agcgtttgta
     1981 ttttgaacca tcgattacca ttgaaggctt gtcaactggc tatcttggtc aaggtgtcaa
     2041 gaccatcata ccagctcagg cttctgctaa gatggaagtc cgtctggtac ctgggttgga
     2101 gccgcatgat gtattagata agattcgaca gcatttggac aaacatggtt ttgacaaagt
     2161 tgagcttgtc ttcactctag gagagatgag ctaccgaagt gatatgtcgc accctgccat
     2221 tgtcaatgtg attgaattgg ccaaaaaatt gacaccagaa ggagttgctg tcttgccgac
     2281 gtcaccgggg acaggaccca tgcacacagt ctttcatgct ctaggtgtgc cgattgcagg
     2341 atttggtcta ggaaatgcca acagtcgcga ccatgcaggt gatgaaaatg tcagcatcgc
     2401 tgactactat agccatgttg aattagtaga ggagttaatt gcaagttatg agtaaggaaa
     2461 tgattaagct agataatatt gatgtaactt tccagcagaa aaaacgtaca atcgaagcgg
     2521 taaaggatgt gaccatccat atcaatcaag gggatattta cggtattgta gggtattctg
     2581 gagcagggaa atctaccctt gttcgagtga ttaatttatt gcaggtgccg acagcgggta
     2641 aaattactat cgatgaggat gtaatttacg agggagaaaa ggtcacactt accccaactc
     2701 aattgcggag caaacgccgt gaaataggca tgattttcca gcatttcaat ctgatggcgc
     2761 aaatgacggc agaagaaaac gtagcctttg cccttaagca ttcgggtttg agcaaggaag
     2821 agaagaaaga aaaagtagcc aaactcttgg acttggttgg actttctgac cgtgctgaaa
     2881 actatccagc tcagctgtct ggtggtcaaa agcaacgtgt tgccattgcg cgtgccttgg
     2941 ccaatgaccc aaaaatcttg atttcagatg agtcaacttc tgccttggat ccgaaaacaa
     3001 ctaagcagat tttggcactc ttgcaggaat tgaatgaaaa attgggcctg accattgtta
     3061 tgattaccca tgagatgcag attgtaaaag atatttgtaa ccgtgtggcg gtcatgcagg
     3121 atggtcgctt gattgaagaa ggttcagttt tagaaatttt ctctcatcca aaagaagaat
     3181 tgacacagga tttcatcaaa acagcaacag gaattgatga ggccctggtg aaaatttacc
     3241 agcaggatat tgttaagaat ttgcctgaga acagtatctt agttcaattg aaatatgctg
     3301 gttcaaatac ggatacggcg attgtcaatg atttgtataa attctatcaa gtatctgcca
     3361 atattcttta tggcaatatt gaaattttag accatacgcc agtcggtgag atggtggtga
     3421 tcttatcagg tgaacctggt cagttgcacc gtgcgattga agcagtgacg gaggcgcgtg
     3481 tggaagtgac gattttgaaa ggagcgaact agatgttaga atggattcaa acgaattttc
     3541 cagatattta taaattgggc tgggatggtc agacaggttg gttaacacat tttaatttga
     3601 ccctctatat gacctttgtt tcctttgctt ttggtggatt tatgggcttg gtgtctggtt
     3661 tgttcttggt cttgacaggt ccacgtgggg ttattgccaa taagactgcc tattggattt
     3721 tggacaaggt ggcttctatc ttccgtgcca ttccttttat tatcttgttg gcggctattg
     3781 ctccttttac gaaaattatt gttggaaaaa ccattggtac agaggcggct ttggtgccgc
     3841 tcgccctttc agtctttccg ttctttgccc gtcaggttga agtggtctta tcagaattgg
     3901 accgtggtgt cattgaggcg gctcaggctt ccggtgctac cttctgggat atagtcctag
     3961 tctatctacg tgagggtctg cctgacttga ttcgtgtgac gacctttgcc ttggtttcct
     4021 tggtcggcta tacagccatg gcaggagcta tcggagcagg tggtttggga caagttgccc
     4081 tatcatacgg ctacctacgg tataataatg atgtgacctt tttagcaact cttttgattt
     4141 tagttatcat tttcgtaatt cagtttattg gagatttctt gacgagaaag attagtcata
     4201 gatagttatt tagctgtgtt ttttcaaatt ttggatagtc cttgacttat ttgaagcatt
     4261 tttatacaat aaatttaatt aaataaacac tgccaccggg tagtcatgca acagcatttt
     4321 atgaacgtcg ttaggtctta gaagatgttc atagggtgct gatttttcta taaaaggagt
     4381 gagaatatgt cacaatttgt tgttgattca tctttttgga gtctatttcc agatgcaaaa
     4441 attggagttc tattattgaa agattataaa acgccggcgc aatcgcctga tgaattagtg
     4501 aaattactgg aagaaagcaa cggaattgcc cagaaatttc ttacggaaga tacctttagt
     4561 gagaatgagg tcattcgtac atatcgtcaa gcctatcaaa aatttaaaac aaaaaaaggc
     4621 gcgagttcta gtatcgaagc acttttgaaa cgttcaacta gtgaccgtcc agtcacaaca
     4681 atttctccat tagtggacat ttataatgcg gcgagtttac gttttggtct tccatgtggc
     4741 gctgaagatt tagatacatt tgtaggcaat ctccaactaa cggtcactga gggtggggat
     4801 gaattctatc tcattggtga tgaaaccaat aatccaactt taccaggtga agtttgctat
     4861 aaggatgata aaggcgccgt ttgtcgctgt ttcaattggc gcgatggtga gcgaaccatg
     4921 attacggatg agacaaagaa tgcgttcttg gttatggagt tggtcaattc cgatagagtg
     4981 gaagatttgg aaaatgccct tgacttcatc agtcagcaag cagagacctt cttgggagta
     5041 gtgccagaaa aatatctact agattgtgat aggcctggaa tagccttgta ggatttgtca
     5101 gtgggattgt gttcggatag atagtggtct ttctagacaa atgctgattt ttctgctaca
     5161 atactaagca tgaaagaagg ttgtttcaaa agcctgtcta gcgagcttgg gagagtgaaa
     5221 gccaagccag tcttgaaata attggcgctt tcccagtcgt gaccatgtcc gactcaatca
     5281 gaatcataca aatgaagtaa taaattaggg tggaaccgcg ttctcaacgc ccctatgtct
     5341 gttgacaggg gaagagaatg tggttctttt tgtctgccga ccgagtattt cttgtttttc
     5401 atctcaaggt gaaaaacagt tactataaag aaaggagacc aatgttcacc ttagaagcta
     5461 tcaatcacgg gcatgagcag tttactgggc ctgattttcc caagctgatt gcctatttta
     5521 aggacttggg tatggtggaa aatattgtgg atatccagtc tggacaggtt acctatcgct
     5581 cacagacagg gcagactctg gaaaagacgg gctatcaagt aacgatacct gtttcggacc
     5641 aagccaatct ggaccagttt gtgactatct tacgcaatca tcaggctgga caaacagatt
     5701 ttcccacctt ctgtcaagaa acagcagaag caggcgttta caagtgggtc atcgacctag
     5761 aagccatgac ctgttcctat ctggaccagg cggagcaagc tgtttttgtg gaagctgtac
     5821 cgagtgtgga gaactagcaa ttttgaaata taaatagaaa gaggatgtta tgtcaaaaaa
     5881 acttactttt cacatcgtca gtggcatagt ctcctttcag tcgaattgcc aaacgctcat
     5941 cgctatggcg actgagctag acgttgtact agttcgcctt tcctagcggt atcggctagg
     6001 aaggctcacg tcgcaatcaa tttatataga aagaggaaat atatgtctaa aaaattaaca
     6061 ttccaggaaa tcatcctgac cttacaacaa ttttggaatg agcagggctg cttgctcatg
     6121 caggcttatg atacggaaaa aggtgcgggg actatgagtc catacacttt cttgcgtgct
     6181 atcggtcctg agccttggaa tgcggcttat gttgagcctt cgcgtcgtcc tgcggatggt
     6241 cgttacgggg aaaacccaaa ccgtctctat caacaccatc aattccaagt ggttatgaaa
     6301 ccatctccat ctaacatcca agaactctac ttggaatctt tggagcgttt ggggattaat
     6361 cctttggagc atgatattcg tttcgttgag gacaactggg aaaacccgtc aacaggttct
     6421 gctggtctgg gctgggaagt ttggttggac ggtatggaaa tcacacagtt tacctacttc
     6481 caacaggttg gtggtttggc gacaggtcca gtcacagccg aagtaactta tggtttggaa
     6541 cgtttggcat cctatatcca agaagttgac tccgtttatg atattgagtg ggctgacggt
     6601 gtcaaatacg gcgagatctt tatccagcca gaatatgagc attcaaaata ctcctttgaa
     6661 gtatcggacc aagatatgct ccttgaaaat ttcactaagt ttgaaaaaga agcagagcgg
     6721 gctttggaag agggcttggt tcacccagcc tttgactatg ttctcaagtg ctctcacacc
     6781 tttaacctgc tcgatgcccg tggagccgta tctgtaaccg agcgtgcagg ctacattgcc
     6841 cgtatccgta accttgcccg tgtcgttgcc aagacctttg tggcagagcg gaaaaaactc
     6901 ggtttcccac ttttggatga agcaacacga gcagaattgt tgaaggagga cgcagaataa
     6961 tgacaaagaa tttacttgtt gaacttggtt tggaagaaat tcctgcctac atcgtaaccc
     7021 catccatgca ccagttgcgt gaccgcatgg cgactttttt gacagacaat cgcttggctt
     7081 ttgatagcat tgatgtcttt tcaacgccac gccgtttggc tgttcgtgtc cgtggtttag
     7141 cagaccagca gactgatctt acagaagatt tcaagggtcc tgctaagaag attgccttgg
     7201 atgcagacgg gaacttcact aaagctgcag aaggctttgt ccgtggcaaa ggcttgacga
     7261 cagcggacat cgaattccgc gagatcaagg gtgaagagta tgtctacgtg accaaacacg
     7321 aagctggtca gccagctaag gcagtcttgg caggcattcc agaggtcttg aaggctatga
     7381 ccttccctgt cagcatgaac tgggcgtcca acaaattcgc ctacatccgt cctgtccaca
     7441 ccttgaccgt tcttttggac gatgaagcat tggatatgga cttcttggac attacatctg
     7501 gtcgcatcag ccgtggtcac cgtttccttg gaaatgaaac tgagattgca agtgcagatt
     7561 cttacgaggc agacttgcgt gcacagtttg ttatcactga ccccgcagag cgtcaaaata
     7621 tgatcgtcga gcaaatcaag gctatcgagg acaaacacaa cgtgacagtt gaaattgatg
     7681 aagatttgct caacgaagtt ctcaatctgg tcgagtaccc aactgccttc atgggttctt
     7741 ttgacactaa atatttggaa gtaccagaag aagttttggt aacttccatg aaaaaccacc
     7801 agcgttactt tgtagtgcgg gataaggctg gcaagctttt gccaaacttc atctccgtcc
     7861 gaaacggtaa tgaccagtac cttgacaatg tcattaaagg aaacgaaaaa gtcttggtgg
     7921 cccgtttgga agatggtgag ttcttctggc gtgaggacca aaaactcaag attgctgact
     7981 tggtagagcg actcaaagtt gtgaccttcc atgagaaaat cggctcactt tacgagcaca
     8041 tggaacgcac caaagttatc gcagaaaaac tggctgactt ggcaggtttg tctgcgggtg
     8101 aaaaagcaga tgtggcgcgt gcggcggaca tctacaaatt tgacctcttg acaggcatgg
     8161 tcggtgagtt tgatgaattg caagggatta tgggtgagaa gtatgccctt cttgcagggg
     8221 aaaaacctgc ggtggcagcg gcaatccgtg agcactactt gccaaactca gcagaaggcg
     8281 aattgcctga gagcaaggtc ggtgcggtcc tggcactggc tgataagttt gacaccctcc
     8341 tatccttctt ctcagttggc ttgattccgt ctggttcaaa cgacccttac gctcttcgtc
     8401 gtgcaacaca gggtatcgtg cggattttgg aagcatttgg ttgggaaatt ccattggatc
     8461 agttgattgc ggagctctac agcttgaatt ttgctagctt gacctatgac aaccagccag
     8521 ctgttatgga ctttatccgt gctcgtgtag agaagatgat ggacaagacc attccgaaag
     8581 acatccgcga ggctgtactt gccagctcaa cttttgtggt cagactgcaa ctggcagcca
     8641 gctctgctat tttccaaaaa gcaaaagagg ctgactacaa ggaagccgtg gaaaacttgt
     8701 cacgtgtctt caacttggct gaaaaggcgg aggtgactgc gattgacgag gccctcttcg
     8761 aaaacgacca ggaaaaagcc cttgctgctg cagtggcagg cttggagttg acagaagata
     8821 tggcgggcaa cttggacaag ctctttgctc tcagcccagt catcgcggcc ttcttcgaca
     8881 ataccatggt tatggtagat gacgcagcag tcaaagccaa ccgcttgacc ctcttgaaag
     8941 ccttggcgga taaggcaagt gctgtggcgg tcttcaatct cttgaatagt aagtaggagg
     9001 cattcatgga acaagcaaaa atcgatcgga tcaatgaact ggcccgcaag aaaaaagcag
     9061 aaggcttgac agaggaggag ttgcaggaac aggcggctct tcgtgaggag tacatcgagg
     9121 gctaccgccg tagtgtgcgt gcccacatcg aaggtatcaa ggtcgtcgat gaagacggca
     9181 atgatgtgac gccagagaaa ctccgtcaag tccaacgtga aaaaggcttg cacggacgta
     9241 gcttggacga tcccaattcc taagagtaag attgccaaaa aaacaaggaa agactaggtt
     9301 ttctagtctt ttttgtgctt ttgagaacat atatttactt gttcattcga ttcataaatg
     9361 gtaaaatgta tatagataaa taggctcagg agggctttgt catgaaaaaa ctactctatt
     9421 ttctcttgtt tcttacctac atcgcatgtg catacagcac gattttcttt ctgcctttta
     9481 tgtacttttc tggaattgtt ggggcaacag gagttggtct gggcctaagc tattccctac
     9541 atcaagaagt caaaaagcat cctgaaaaac aattgtcaga gtatttaccg tggggatcta
     9601 agagggacaa gattatggta gtaaccattc tacttttctc cattttggtc agtttcattc
     9661 cagatgtgaa ttggcataga ggcctggcaa tcctcttaga tatcagctat gtactccttt
     9721 ggcaagctat gcttatccaa ttcttacgaa aatattattt taaaaacgca tgagagtttc
     9781 atgcgttttc ttttctaaat actttgtcca gcttttaatt ttttcataaa gatgatggaa
     9841 cttggaatca ggacgatgat gcttccgatc caggcggcgg ggttagcggc ggcggttcca
     9901 taaaaaccga aatactgcat gccgatgatg gcgactgctg ctcggaaaat cagttctcca
     9961 aagcctgcta gtgttgggat aaagcccttg ccaagtccct gaataaagct acgaagaata
    10021 aagagggaag caacaatcca gtaacaagag ccgttaatga tgtagtaaac aagagccaag
    10081 tccagcactg tttggctggc atttggcaga aagagaccag agaagaagcg attgcccaag
    10141 atgagaatga ccgcaaatac aatggcccaa gcaatgctga ggagtaatga gtggcgcact
    10201 ccttctcgaa tacggtcata gagcttggca ccgtagttct gagcagtaaa ggttgcgata
    10261 gccaagccca gattgaccat gggcagcata gccaactggt cagtacgaag ggcaatggcc
    10321 tgggcggcga tggcgtctgt tcctagttgg ttgaccataa actgcaaggt catggctccg
    10381 atggcgataa tactggcttg aaatcccatt ggaaaagcaa gctgggcatg tttcttgaga
    10441 ttacctctat ccaattttaa atcagctagt ccgatatgat agtgaggtac cttgtggata
    10501 atgtaaaaaa taagaaagag gaccgaacag gcttgggcaa ggatagttgc aaagccagct
    10561 ccgaaaacgc cccagttcat aactaagata aagaaaaaat ccagaccgat attgataaaa
    10621 caagcgataa ctagagccag tagaggtgtt ttagagtttc cgagactgcg tagggctgaa
    10681 gacaggaaat tataaaaaat agtaaaggtc aatcctccaa acatggccgt tagaaaggca
    10741 tgggagtggt cgatgatact cacaggcgtt tgcattaaga ccaagatagg tttcaaaaaa
    10801 gctaaggctg agactgttag taaaaggctg atgagggaag cgtagaagag tccgtggaca
    10861 aaagattttt taagcccctc taagtcgcca gctccaaagc gttgggcaga aataatggtt
    10921 aatccattgg taacaccttg ggcaaaaccg atgattaaaa aaatcaggct ggctgtcgaa
    10981 ccgacacttg caaaggcgtc ctttcccaaa gtatgcccca caatcatgga atcagcaaaa
    11041 ttataggcca gttgaaaaaa agatccaatc aacaagggaa tagcgaattg taagatgacc
    11101 gcaatcggct ttcctttggt taaatcattc ataacgtctc cttttgacag atgataagcc
    11161 cactagataa atgatagtct agtaggcttt ctagggataa aatatttctc ctgaaaacgg
    11221 agtataggcg taaatttgtt atttatactc ttcgaaaatc aaaatcagac gttgttgact
    11281 tgatttgatg agtgaaaggc tccagtggag cctttcagcc tgttaccttg aaacaaaata
    11341 gtaacagggt tctatctgcg taagtagtaa cgaactacgt tcgccctatc tccaacctcc
    11401 aaaggttccc caaacctttg gagctagtct gtttttgatt ttcattgagt attaatttgt
    11461 cagttcttca aaatgatcga cagtgttatg gtctgttact gctaagatga gttcgtcaga
    11521 tttgaagaca tagtcaggag tcagttggat gtttaattcc tgattttcgc cacttcggta
    11581 accgatgata ttgagtttat aatgttggcg gagttttaat tcgccgagtg tttttccaat
    11641 ccattttact ggcgggtgaa actcgacaat ggaaacattg ccttcgagct caaagaggct
    11701 ggttgtatcg cggtggagta gttgttttgc tagagaaata cctgtttcac gttcaggaga
    11761 aataacctta tcggcaccga cacgaagaag gacttctttc gcagttgttc ctttgacttt
    11821 gacaatgacc ataggaacac ctagaacttt gctatgcatg acagccagaa cactggattc
    11881 caagttttcg ccagtagcta caacaacagc atcgcagtta ccgattcctg ctgcacgtag
    11941 gagcgagcga tcggtgatgt ctccgacaat accgcgtgtg agaataggtt ctagatgatt
    12001 gatacgttgc tcatgattat cgatagcaat gatattgcaa tcgtaattgt gtaatgtttt
    12061 tgcaatggta gtaccaaaaa ctcccaggcc gagaattccg atagtatagt ttggcatgat
    12121 ttctcctttt aaacaagcat agatgatttt gcgtattgaa gactttcggt tttagataat
    12181 tttcgaacag aaaggcttgc gagaatagaa agtggaccga tacggccgaa gaacatgagc
    12241 gccataatga ctgcttgacc ggccatggtt aggcttggag tcagatttgc cgtaacacct
    12301 acagtggcta atgctgacat gacctcgaac attaaaaata gaagtggttg tcggtcatct
    12361 gttagggcaa gtgcgaagag ccctatgata aacataagta ggaagactga gaatgtcgca
    12421 aaagctttgc ggatgctgag gttatcgatg gttcgtccca taaagttggt atgagggaga
    12481 ccgagaatct cgctacgagc atagagcact aaggttagga aggcggttat tttaataccg
    12541 ccggctgttc cacctggggc tccgccaagc atcatctgaa agatatagag caagagggtg
    12601 attggttcag ccttcgtata gtcgatgctg gcaaaaccag cggttctcat ggtgaccgtc
    12661 tggaaaaagc tggctaataa tttatggcca aatgatagtt gcccgatagt agaagggtta
    12721 ttccattcag tgagtaaggt tgtcagagtt ccgagggtta gtataatggc tgttaggcct
    12781 agaacaatct ttgtatggaa ccctagtttt cgtaggctac gtttttgccc gatttgtgtt
    12841 tgaaggtcaa accaaaccga gaatccaaga cctcccataa taatgagact ggctaatgtt
    12901 atgttgatta gaggattatc cacatagcgc atgatgctag ttgcgccaaa attatcaaaa
    12961 ccagcattac aaaaggctga tatagctacg aaaatggagg taaataaacc tctcgcccat
    13021 ccaaattcag gcacaaaatg aaaggacagt aaaagggctc caaaggcttc gaccgccaag
    13081 gtaaaaccaa aagctgattt gaggaagtta cgaaaatatt ttgtgtcaga tcggtttaga
    13141 gcttcttgta aggtcgccat attgatgaaa ttcattttac gaccaccgcg taaagcgaag
    13201 agaccgatga atcctatcaa gctcaaacca ccaatttgga ttagcatcat acagataatc
    13261 tgtccaaaag tagaataggt ttcagcaacg gctttggtaa atagccctgt cacacaaacc
    13321 atggagacag atgtaaagag atgatcccaa taacttgctg tagaggtgct aatttgtgag
    13381 atgggaagac ttagtaaaat tgatccagtc agaatcacga ataagaaact gataatgatt
    13441 cgctgactgg gagaaagttt gatcctaaat ggtgacataa ttctaccttt tctcaaaaaa
    13501 ataaaagatg aagatattgt agcacaaaag aaagaaaatg tacgactaaa acacgcaaag
    13561 aacctgattt ttttctcttc ttgaaagctt cattattttt tattaccatg gattttataa
    13621 gtggtgttta tatgaggtgg ctcattatat ttgtgacacc aggattatgg ggaaattatt
    13681 atgggcaatg aaaaagtggt gcggaccata aaaagaatct ccttagttga cctagggaga
    13741 tttatttcca ttctgctaag actagttgat gatagtgacg taaaggtccg accttttgga
    13801 ggaggtaggt agcagccagt ccgaccaata agcctgataa aattcctgta aaagcgagga
    13861 ttggcaggta gtttagtaca tagaaagaac gggcaatggt agcaaaaaca agaagctgac
    13921 caagattgtg caacatcccg cccagaatag aaattccaat aggactgaca cggtttggac
    13981 cgagctgctt ggcagagagc attcctacat aactcaaagt agttccggca aagccataga
    14041 ggaatgtgga aaaggtgcct cccagaaagg ttgagatgag caagcgtaga gcgacaacct
    14101 ttaggctatc ctttgtaggg agggtaaaga tagcaattaa gctaatcaaa tttcccagtc
    14161 ctagcttggc gcctggagca aaagcaaatg ggggggtgat gagtcgttca atcaaagaaa
    14221 tgacaactgc ctgagctgct aacatcgtaa taaagttaag tgtttgacgt ttagaattca
    14281 tgggtgtaga gaaaaaactc tttctagtcg attatctatt ttactatcat acttgttttt
    14341 gttcactatg gcaagttttg tttgtgtata ttactaatta ttgaaatttg cttgtcaact
    14401 atcttggaat acgatataat ggaaacatgt aatttgtttt gattttcaca aggaggaaac
    14461 attgtgacga aaaatattgt gattgtcggt gctggttatg cggggattgc agcagctcga
    14521 ttgctaggaa aaacttttaa aaaggatcaa gatgtaacag ttaccttgat tgataagaac
    14581 tctttccata cctatatgac agagttgcat gaagttgcgg ctgggcgtgt ggaagccaat
    14641 gcaatcaagt atgaccttca acgtatcttc aaaaaatatc caaaggttca attggtaaca
    14701 gacaaggttg ttgagattga ctacgataag aaacaagtag ttgcggaaca ccaaactctg
    14761 gattttgatt acctgctcct tgcaatgggt ggtgaggcta atgactttgg tgtgaaaggt
    14821 gttaaagaac acggttttac actttggtct atcgaagcag cagaacgttt gcatgaccac
    14881 atgattgatg cttgctatcg tgccatgcgt gagcatgatg aagccaaacg tcgcgctctt
    14941 ttaaccttta ccgttatcgg tgctggcttc acaggtattg agatgattgg tgagttgatt
    15001 gactgggtac caattttggc gcgtgagttc aagttggatc caaaagaatt ctcacttaag
    15061 gttgttgagg caacgccaaa tatcttggct atggttactg aaaaagagca agtcaaggct
    15121 cgcaaatacc ttgagaaaaa aggtgttgaa ttggttcttg gcgatggtgt agcaagtgta
    15181 caagaagata gcttgacact ttcatcaggt cgtcaaattc ctacctatac ctctatttgg
    15241 acagctggtg ttcaagccaa tacagacgca agtgaatttg gtattgaaaa agcacgtgca
    15301 ggtcgtttgg tagccaatga gttcatggaa gcgaaaggca aggaaaatgt ctatgtagct
    15361 ggcgacttgg tttactttga agaatcagaa ggaaaaccaa ctccacagat tgtacaagca
    15421 gctgaacaga caggccatac tgcggcaaga aatattattt cagcaatcaa gggtggcgaa
    15481 aaacatagct acaaaggtaa atatgatggg tttatggtat ctattggagc acgctacggt
    15541 gtagccttct tgatggacaa ataccacatg tcaggcttta tggcaatggc tgtcaaacac
    15601 atggtaaacc tactctactt ctttactatc cgtagtttct tctacatggg ttcttatgtt
    15661 cgtcatgaat tctttgacat tcagaataag cgaaacattt ttggcggtca tacttcaggc
    15721 aaaggaaatc ttctctggtc tgtgccaatg cgtgtccttt atggttcagt atggctctac
    15781 gaaggtatca agaaagcctt tggtctattt ggaacaacat catggtttgg ggatcaagtt
    15841 gtcttcccat tcccttggtt agctgatcca gtatctggtg catctgctgc tgaggcggtt
    15901 tcaagtgcct cacaagcggc aactgctgcg gcagaagcag ctgaaccaat ttttggtttg
    15961 agctatgcct atggtgaagc accgatggct gttttggaca aaatgcctga ttggtttgct
    16021 actatcatgg aatttatgat gccaaaccaa gaagtagcac tctttatgca aaaatttatg
    16081 acagtagcag aaatcggtat tggtctggct ttgattgctg gtgcctttgt atggattgta
    16141 tctgctgcaa ccgttgcttt ggtagttatg ttcagcctgt caggcatgtt ctactgggta
    16201 aatatttggt tcatcccagc agctatttct cttatgaatg gtgcgggtag agccttcggt
    16261 ctagattact ggattatgcc atggttgggt cgtttcctag acaagaagat ttatggaaag
    16321 ccgaagcata tttaccgtat caagtataaa aaataaagga aatatagaaa gttagtggta
    16381 catcaaattt ggaataccta tcctgagatt gagaggggac ttgaagaggt aaaatccatc
    16441 atcttatctg agatgatggt cctgcatcca gcagttacat cgaagattgt tgaatatgta
    16501 gaggcgccag ggaaatacct gcgtgctggc ctctgtctgc tctttgcaca aatgacggaa
    16561 ggaaagatta gccgttcaaa gctatatttt gctgcccatt tagaagtcct gcatctggcg
    16621 actcttattc atgacgatgt gattgatggc gcggataaac ggcggggagt cacggcggct
    16681 catcaacaat tttcgaatcg aatcgctatc tacacgggtg attatcttct ggcctattca
    16741 agtcgactat ttggaaaggg gcttcgtttg ctagaagtat cacgtgatga tttggatttg
    16801 ggcaatgata agctgatgga aacaattctt cgaggggaat tatctcagct actcaatcaa
    16861 tttgatgcca atatgactat gaaagcctat ctcaagcaaa ttcaaggaaa aacagctttt
    16921 ctatttggac ttgcctgtca gttggggagc tttgtaccag gccaatctag gaaagacagt
    16981 agcatggctt ttcggtctgg gcaagcactt ggcatggcat ttcagctacg agatgactta
    17041 attgactatc agctggatgt agcagaatca ggaaaaccta gattgcaaga tattcaaaac
    17101 ggtatctata ctgcaccgct actttttgcc atgcgagaag acaagtctat ccagcagcaa
    17161 ttgcgggctt atattcaatc ccctacggca gaagggttgg aaatccttac agataggatt
    17221 tttgcaacgc atgctattgc caaaacagag aaactgattg ttagctattt ggaaaaaatg
    17281 atgaattttg tagatagaat accacagtta tcgactgcgt ctatgcaaaa tttggtggca
    17341 atagttttta gtcattattt ttaaaaaata actagacatt ttctctaatt aggtatatca
    17401 ttataagtat aaaactattt acttaacaaa aggagcattg ttatgaaaac aactaaagtt
    17461 gtgttgaaaa gtttggtagt tcttggtgcg gtatttgcac tcgcagcttg cggctctaaa
    17521 caagaatctg cttcaacttc gtcttcaact aaagaaacag tagtattgaa agatggtact
    17581 tataaagctg agtcaagcaa agacgattat ggctacaaaa ttgttcacac attgactgtt
    17641 aaagatggaa aaattagtga gtcaaaattt gactacgaag cagaagacgg aagtcttaaa
    17701 tcagcaaatg aagaatacaa caaaaaaatg aaagataaag ctggagtttc tgccggtgaa
    17761 gcaattgaac aactcaatgc agctttggtt gagaaacaag aactctcagc tgttgaagtt
    17821 gtatcaggtg caactcatac ttctgaagac ttcaagaaga gtacagaagc ccttcttgca
    17881 gcagctgctg aaggaaaaac agaaactgta aaacttgact aattaagtct atacagaaaa
    17941 gacacagtcg cacttgtttg gctactgtgt cttcttattt tttggggaag gtaaaatcag
    18001 tgaaaaaaat tgcaagtcta ttgttcgtgg gcctactgat ggttttgctt gttgcctgtg
    18061 gtggtaaaca aaacgaaagt ttatctgttg tgaaaactcc gttgactcgt agtgaaagct
    18121 tacttcacac agtagtgcag ttgagtattt atcatgaaaa tcaggaagaa gcgatggatg
    18181 aagctgtctc ctatattaag gagatggaaa gtctgttgtc cacaaacttg gaaggggcag
    18241 atgtctaccg tatcaatcag gcagcaggaa aagaagctgt caaggttgat gaacgtacct
    18301 ttgaagtgat tgaaacagct attgacatga gtaaagaaag tcaggggcta tttgacattt
    18361 ccattggagc tgtgagcaat ctgtggaaaa ttggagatga ggatgcacgt aagccgagtg
    18421 atgaagaaat caaagctgct ctgccattta tcaattataa agacattact ttagataagg
    18481 agaagaagac cgtctttatc aaagaaggaa tgaccttaga attaggagcc atttccaaag
    18541 gttacattgc agataaggtt agggaattgt ttgccagcaa agggattacg actgctatca
    18601 tcaatctagg tgggaatgta gtggttatgg gggattcgcc aacgacacaa aatggttgga
    18661 atgttggagt tcaagaccca gaccaagtgc gtggatcaac ggtcggttct gtgccaggga
    18721 cacatgattc ggttgttacc tcaggtattt atgagcgtta cttagaggtg gacggtgtca
    18781 aatatcacca tatccttgat cccaaaactg gatatcctgt ggaaaacgat atctcaggtg
    18841 tgacagtctt ttccaaaaca tctatccaag gagatgcctt atccacaact ctcttcttac
    18901 taggtgtgga aaaaggtctt gactttatca atcagattga cggtgtagaa gctgttttca
    18961 tcgataagga gcagggtgtt catctgagtg atggcttgaa agaaagcttt gaattaacga
    19021 atgaggagta tcatcttgtc aatgaataaa tcaactaaag ggctcagttt gcctgtattt
    19081 ctagaatttg ttgaaatgaa gaccaaggta gccagtgttt ttccgatgac cctggggatt
    19141 ttatggagcc tgtatcgcta tcaagctttc aattggctca atactctcct cttcattatt
    19201 gccgtcctta gctttgacat gtgtacaact gccatcaaca atagcatgga ctaccacaag
    19261 gccaaggatg aagcctatcg tcaggaaagc aatgtgattg gaaaattctc cctagatttt
    19321 cgtcagatga ttggaatcgt ccttgctcta cttatttttt ctctactggt ttcattactc
    19381 cttgtatggc ggaccagttg gctcctccta ccgatgggag ctctctgttt cctcattggt
    19441 atcttctata cctttggacc tattccgctt tcgagaatgc cactgggtga agttttctct
    19501 ggagtaacca tgggatttgg catcttcttt cttgctgtat ttattcagca accagatttg
    19561 ctactgacca gccaagtgag cggtcagtgg atgactttgc aattttcttg gataaaaata
    19621 attgaaatta ttttcatgtc cattcctctg gtaaccttga ttgctaatat catgttggct
    19681 aacaacacct gtgatttaga agaagatatt cgcaaccatc gttatactct ggtttactat
    19741 attggcaaga aaaatgctct taaattgtat tttgtcttgg caagtttacc atggttgctg
    19801 tggataatct actgtctgat aggattctta ccaatttggg cactggccgg tttaatcgga
    19861 gtttggcctg cttataagag tctagaaaca tttttgaaaa agcaagtcaa acgggaaacc
    19921 tttatcgagg cagtaaagag ttttgtactc tttgcgctgc tatatgtggt gatacttgct
    19981 ttagccctta ttttctaaaa aggaaagaca cagtcgttca taaggctgtg tcttctttgt
    20041 tatatcgtca gttagttttt cttttattac ttcgacgagc gaggaaacat cgtttcctaa
    20101 tttccaactt caaacactcc actggagtat ttgaactcgc cttgcctgat tgaaacagtc
    20161 tgggggactg tttcaagtca atgcctagaa ataagaaagc attgagttat gcctgcggct
    20221 tttgatgcga actttgttcg ctttatctcc aacctccaaa gatttcccaa acctttggag
    20281 ctagtactaa aagtaaacta aaagactata gtggtaaaat gagttcttct tcatcagtgc
    20341 tttctccgcc aacggatttg atttcaatca acaggttatg tggcaggcag acggagagtt
    20401 gacccggctg gctaatccag ctggtcataa cggcaatttg gtctgggcta ttgtcttcct
    20461 tgacacgaat gcgttcgcca tcaacttcaa tgatattgta ttgcccttca ttgggatagt
    20521 aggtcttttc ttgatgaggt gtgtcctttg ataattcaaa ttggtcgacc acctcaccat
    20581 tgatgcggac ataggcaatt gtttttgcct cattagtatc tgtagtcaga tgtgtgtagg
    20641 taaaaattgc tggaagaaag gataaaacta gggtgaatcc gattaagata taatcaaata
    20701 gtttgagttg tttgagaatg gatttgaatg tcatatacaa tctattttat agaaaaaatc
    20761 ctactttgta aaatgttgga tgcagactac tttttcaatt gtctaaagaa gagtaggatg
    20821 gctaacattc cccaaaatcc agcatgaagt ggctgaattt ttccagcgaa aaatacaatg
    20881 gagaaagtta gggcaaaacc tgcaaagaga aaccagagca gtggtttatg ataaagatag
    20941 atagcttttt ggaaagcatt tgcttctggg ccactagtct gccagtcact attcaagatt
    21001 ggaagcatag tgaacagtaa gataaaaatt ggtggattgt ccccagtcag gtagctatgt
    21061 atatacaggc tacaaattgc tgtataggag agaacaatca aagtgagtat gaatttcggt
    21121 ttgtcaacgt tcatctggct tctccttttt gaaataaatc cgataaagaa tagcggcagc
    21181 aaatccagca ggaaggatga ggataagtgg tttgacatgt cctaaccaaa tgcccacgga
    21241 ataggtcaag gtcatggcaa acagggcaaa gatggcttga atgataaagt agcgtttttc
    21301 ttctgctgtt tgataggatt tgatgatttg gatggtcggt agcatgagca ggaatgaacc
    21361 gttaatcggc tcattgacca tgtaagagta gatgaagaag gcagaaaata aagcataaaa
    21421 tagaacaaaa aatcgacagg tttgtttggg tgtaaaaggt ttattcatgg ggtcagctcc
    21481 ttattttttc ttgacagaat ctgcttccag tttttgcaga taggcaatgg cagacagggc
    21541 tagactggca aagaggccca tcatgccacc gaagaggagg gattttacgt ggaagatgga
    21601 agccagtagg ggaagctgga ggctaaagag gtctgccagc ccagcaaaga ggctagatag
    21661 cagggcaact cccagtccca aaaccagtgg attgagggtc tgtccttgtt tttcctcagg
    21721 gctcagttcg tccatgtcat attgaggcag gtcagcatgg agggtgcgca tattaacgat
    21781 accaattagg ataatactga agaaggcaat gatcattgga tagtaggcag ccacctccag
    21841 agggtagcgg taggctagga agtaggcgat ggcatttcca agagctagga agtagaagta
    21901 gtagataaag gcttgtccgc cgatagcatc agcctcggcc cgtcggtatt cgtctaaagg
    21961 accgcggata ccataaaaac gtttaatcat atttttgatc cacttgggtt cttctttggc
    22021 aatagcagag ctgacagtta gtttttctgc ctttttcatg cgtttacgaa gagtgatttc
    22081 gatataaatt cccatgaaaa caccgactag acaggctgca aggaattttc ggaggtcaaa
    22141 taaatggtct agtggattga gtccttccat ccaggcatca aatcccgtgt tccagatata
    22201 cataccacag gtgaaataga gggcgaattt gatacttgct cccttgaatt tcttttgttc
    22261 cttggtagtc agttcttcta catctaaact gtccacttga ctgtggcgca tcttggatgt
    22321 catatacata ctggcggaaa gagtggatag gagtagagcc gttgggtagc cataggcaac
    22381 gacttctggg tagcgtttgg atagggcaag tgccagcagg gttatagcca tggtgcccca
    22441 aaagagcagg ataaagcagg tattgcctag tcggaaggct tctttttggc gaaattcatc
    22501 caagggccct gcgataccgt aaaatcgttt gattaattta tcttgaaagg tttctttttt
    22561 cataagcagc tccttatttt tgatcgaaca atggtaagat gtaaacaaag cctaagaagt
    22621 agatggtccc agcaatcagc aattgtagcc aaaattttgc ttggctgatg gtgtgcaaga
    22681 tttctgctcc gctattgccc caaagctgaa agaggacaaa gagcggtata aaaataaggg
    22741 tagagataag agcttgacgt atattctttt tcatgttttt tcttcctttc tattcattcc
    22801 aaaagaggct gttgaggtca gtctgtaaag ctttggctag gttgatacag aggtctagcg
    22861 aggggttgta tttgttgttt tcaatcatgt tgacggtctg cctggatacg ccgatggctt
    22921 tggctagatc cagctgggaa atgcctagca gtaggcgata atctttgaca cggttcatgt
    22981 gccctccttt ctatgtcaat tatatctgac atgcttggct aaaaatgaga ggataggttg
    23041 actatccttt taaaatattg tcaattatat ctgacatata actgtaaaaa aatgtgggag
    23101 acctccctgt tgatgtcaac tatatgtgac atgtt
//
LOCUS       DASGCC010000014        22862 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.014, whole genome shotgun sequence.
ACCESSION   DASGCC010000014 DASGCC010000000
VERSION     DASGCC010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22862
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.014"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..1503)
                     /locus_tag="U1404_000378"
     CDS             complement(<1..1503)
                     /locus_tag="U1404_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5347362.1"
                     /translation="MFGLTVRLALTNLKKNRRLYFPYALMTILSTAIAYIFASLAFHP
                     DLGQVKGADGVTMVLGFGMIVVMLAVAIMVFYANSFVMKQRSKEFGVYSILGLEKKHL
                     LLMTFLENLVFAASSILTGLLLGLALDKLFYALLLKVMQMPVVLASTFQLKSLVTVVI
                     YLFGIFALVSLFNIGKLGLTDSLKLVQGKKRGDKKTGFLWLQTLLALILLGAGYAIAQ
                     LVTSPMQAIPSFFGATLLVILGTYLLFHAGVISLLNWLKNRQTYYYKPDNFISVSNLI
                     FRMRKNALGLATITILSSMFLVTMVGGLNIYIGGKDYIANQNPNDYSIDVGMQPTTSK
                     AQMEKWEEWAEAILEETDIPVESKVVYPYQQAYFSEVTNQQVRFFTDEEAAGMNFSDR
                     VGIGFVLDQASYEKMTGEKLQLASDQVAIFSKGVQYQAGQTLTFDEKEMEVVQVLPKN
                     VTLGHLPDHGSFLLSQYLVIVVQDLAVFENQAENRYYMGFESSLSEEEQVD"
     gene            complement(1505..2263)
                     /locus_tag="U1404_000379"
     CDS             complement(1505..2263)
                     /locus_tag="U1404_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347363.1"
                     /translation="MPLLDVQHVQKIYSSRFKAGQVEALKDIHFTVEKGEYVAIMGES
                     GSGKSTLLNILATLDKPTQGKVLLNGLDTQSIKSKEAAVFRREKLGFVFQDFNLLDTL
                     SVKDNVLLPLVLSRYPTDEMNKRLVHTLNSLGIATLQDKMPYEISGGQQQRVAVARAI
                     ITQPEILLADEPTGALDSKSTATLLDIFEKINQEGQTILMVTHSTVAASRAKRVLFIK
                     DGILYNQIYRGERTSQEMYQLISDTLTLMANRGE"
     gene            complement(2361..3353)
                     /locus_tag="U1404_000380"
     CDS             complement(2361..3353)
                     /locus_tag="U1404_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5347364.1"
                     /translation="MNKDDFGSLVPGFLTSWLGHRLIFLIAYAVFAVAILAYSSLFDI
                     KRNLVFYAILLLSICWLLALLWDFVREFSRFGKIWRGQKVATGTASERLLQEKVQWLE
                     VQNKKILEKQRQEQTELDDYYTLWAHQMKTPIAASQLLVKEVDSSPVRHQLETELFKI
                     EQYTGLVLNYLRLQSFHDDLVIESVNLDELVRNLVRKYSLFFIQVNTSLDLGQLDRTV
                     KTDKRWLGLLIEQILSNALKYCQGGSVSIFLDGDELVIRDTGIGIAESDLERVFERGF
                     SGFNGRRTQQSSGLGLYLSRKIAAELGYSLKLKSKVGRGTEVRIGIKEVELIFD"
     gene            complement(3346..4029)
                     /locus_tag="U1404_000381"
     CDS             complement(3346..4029)
                     /locus_tag="U1404_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5347365.1"
                     /translation="MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEF
                     QPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSSHDQPMDIVMAINMGADDYVTKP
                     FEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
                     RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGV
                     GYGLVWTHE"
     gene            4199..5368
                     /locus_tag="U1404_000382"
     CDS             4199..5368
                     /locus_tag="U1404_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM5347366.1"
                     /translation="MPNLLTYIEETQYDNFYDKPINKLDILALTELSYLPFDNLVPYS
                     FTENGVRLDRLAAAFEETYKNNFPPFSMVTKNRLALLGLLAKSKRFKSIKAFGFVDDY
                     QLEQEQQFSAISYRLDRQTILTAFRGTDDTIIGWKEDFHMTYMDEIPAQRAASGYLEK
                     LMMQQGGQFYLAGHSKGGNLALYAACQQATDQQDRILAIYPFDSPGLHKKHLEAPSYQ
                     AIHQRIFPVIPQNSIVGMMLETPENAQIVQSNTLGILQHISFSWEVDGSDFKLAPALT
                     SDSLQTDQALKTWTASLTDDELRDFFDLFFGIFIKAGIERFSDITVNPLQKLQEIDRL
                     RKEIAPEEAEMVDKLIRLLFDTRYQIWRDNIPSPEISLPDWWKLFQRNTTENKGN"
     gene            complement(5383..6507)
                     /locus_tag="U1404_000383"
     CDS             complement(5383..6507)
                     /locus_tag="U1404_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HEM5347367.1"
                     /translation="MKLPRFGVEEWLNVHENSAIYDIAGVSISSLTLEELFALSGTNP
                     EDFYEKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYGLIE
                     PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPNTKMICIN
                     NANNPTGAVMDRAYLEELAEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNS
                     LSKTYSLPGIRVGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERN
                     RHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLV
                     PGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKEN"
     gene            complement(6655..7416)
                     /locus_tag="U1404_000384"
                     /pseudo
     CDS             complement(6655..7416)
                     /locus_tag="U1404_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043863.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
     gene            complement(7428..8939)
                     /locus_tag="U1404_000385"
     CDS             complement(7428..8939)
                     /locus_tag="U1404_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HEM5347368.1"
                     /translation="MNLFETFIERKDEWGIALFEHLRISLLALIIAIAIAVPLGLILS
                     SKKRLTEWSLQITGIFQTIPSLALLGLFIPFMGIGTLPAVVALVIYAIFPILQGTLTG
                     LGEIDPSLEEAATAFGMNKWEKLKKFKLALAMPILMSGIRTASIMIIGTATLAALVGA
                     GGLGSFILLGIDRNDSALILIGAVSSAVLAVLFGYGIRLLQDKKPKTILLALLVTLFT
                     VGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDRTDIKVEIKPNFGKTSFLY
                     EALKSGSIDIYPEYTGTITSTLLKNSSMDLSTNSDEVYTYAKEAILEQDGLVYLAPMA
                     FQNTYALAVTEDYAQDHGIEKISDLAKVQQTAVAGFSLEFNDREDGNIGLKNLYNLQL
                     NVKTMEPALRYEAIKSGNVQIIEAYSTDSKVVIYKLKILEDDKQLFPPYQAAPLLSKE
                     TLEKYPELEQVLGVLAGKISTEEMTQMNYAVDVEGKSAEQVAREYLEQEGLLK"
     gene            complement(8939..9670)
                     /locus_tag="U1404_000386"
     CDS             complement(8939..9670)
                     /locus_tag="U1404_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347369.1"
                     /translation="MIDYQNVSLTCKVSGPILKNLTFDIQEGEFFVLIGPSGSGKTTT
                     LKLINRLIEQTEGEVFFQGKRLKDFDLRELRLETGYVLQQIALFPNMTVAENISLIPE
                     MKGLGKEETLTRTRELLTKVGLEPDSYLDRLPKDLSGGEKQRIGILRAIIANPKVLLM
                     DEPFSALDPISKAQLQDLIKELHEEFKMTTVFVTHDMDEAVKLADRICLMQDGQVVQL
                     GSPDELRNHPANDFVKEFIRARGGM"
     gene            complement(9663..10112)
                     /locus_tag="U1404_000387"
     CDS             complement(9663..10112)
                     /locus_tag="U1404_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5347370.1"
                     /translation="MMEVEKRSKDYARMFDQQVGLYEGYARRHGLNAKCLSILMWIYY
                     NPGGVTQNWVSKKTYSSKQVVNATVKKFLDGGLVVLEENPADKRHKKIKLTEEGQQFA
                     SRILDPLEEAENKALSQLSQEEQELMLGLIQRYSQSLMAILKGEDDD"
     gene            complement(10423..10959)
                     /locus_tag="U1404_000388"
     CDS             complement(10423..10959)
                     /locus_tag="U1404_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM5347371.1"
                     /translation="MVKKSSSVWTSLLLGAAGGAAAAAFLASKTGKTVKEKVVNFAND
                     YKENHEEINADFVTKAQDLGKQATERFTEVKTQLETGELTVEDLVKSGKEKSLETFEQ
                     IKEKIAEQNLSTADILEAIKAKTAKAPTVDLTEEDIEDAVVVSEDIELTIDDVIIEPV
                     SETVSEVASETASETVEG"
     gene            complement(10943..11356)
                     /locus_tag="U1404_000389"
     CDS             complement(10943..11356)
                     /locus_tag="U1404_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEM5347372.1"
                     /translation="MIIEISVLIIALSIAAVAVYIVLLLKKLGTVTDEAQQTLKVLTS
                     DVNVTLYQTNELLAKTNVLVEDVNGKVSTLDPLFVAVADLSTSVSDLNASARDLTVKA
                     KSAGASTVKAGGALSALSTLSSLLGKKGEKNGKKI"
     gene            complement(11367..12170)
                     /locus_tag="U1404_000390"
     CDS             complement(11367..12170)
                     /locus_tag="U1404_000390"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM5347373.1"
                     /translation="MNTIEKRLNMDPIAIKLGPLEIRWYAICILLGLILGVYLATKEG
                     PRKKIRQDDILDFILIAFPLSILGARIYYVAFSWSEYKDNILSIFAIWNGGIAIYGGL
                     ITGAIVLYFFTQYRFINTLDFLDIVAPSVMIAQAIGRWGNFFNQEAYGKAVESLNYLP
                     AFIRDQMYIDGAYRQPTFLFESLWNLLGFGLVCVLRRRPKFFKQGEIAAFYLVWYGCG
                     RLLIEGLRTDSLMFLGIRVSQWLSGVLILVGIIMVVLRRRKSSIPFYQP"
     gene            complement(12145..13077)
                     /locus_tag="U1404_000391"
     CDS             complement(12145..13077)
                     /locus_tag="U1404_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEM5347374.1"
                     /translation="MTVYVKDLVDNLRIECAYSTEELLQKQITTADITRPGLEMTGYF
                     DYYAPERIQLIGMKEWSYLMAMTAHNRYQVLSQMFQPETPVVIVARGLEIPEEMYKAA
                     KEKQIAICRSKTATSRLSGELSSYLDSRLAQRTSVHGVLMDIYGMGVLIQGDSGIGKS
                     ETGLELVKRGHRLVADDRVDVYAKDDVTLWGEPAEILRHLLEIRGVGIIDIMSLYGAS
                     AVKDSSEVQLAVYLENFETGKVFDRLGNSGDTIEIAGIAIPQIRIPVKTGRNISVVIE
                     AAAMNYRAKQMGFDATKIFEERLSNLIEHNREEA"
     gene            13291..14235
                     /gene="manA"
                     /locus_tag="U1404_000392"
     CDS             13291..14235
                     /gene="manA"
                     /locus_tag="U1404_000392"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEM5347375.1"
                     /translation="MMEPLFLTPVMHEKIWGGNRLRTNYHYDIPSEKTGECWAISAHP
                     NGVTTVSNGQYKGRGLDDLYKNEKHLFGNSTDDVFPLLTKILDADDWLSVQVHPDDSY
                     GLAHEGELGKTECWYILEAEDGAEIIYGHNAQSKEELRQQIEAGDWDKLLTHVPVKKG
                     DFFFVPSGTMHAIGKGILILETQQSSDTTYRVYDFDRRDDAGNLRELHIEKSIDVLTI
                     GPVANSTPAHLKAGNLDSTLLVANPFFTVYKWNIQQEIKMEQTVPYLLVSVIEGEGTI
                     QVGETSYPLQKGSHFILPANVTDWTFTGQMDIIAIHAN"
     gene            complement(14282..15673)
                     /locus_tag="U1404_000393"
     CDS             complement(14282..15673)
                     /locus_tag="U1404_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5347376.1"
                     /translation="MKKFPTNFWWGAATSGPQSEGRFYKKHKNVFDYWYDIEPEAFYE
                     GVGPDVTSNFYNSFREDIAMMREVGLNSVRTSIQWTRLIDDLETNTVNQAAVEFYNQV
                     FDCFIENGIRPIVTLHHFDLPAELYHKYGGWESRRVVDLFVGFAEQAFKLFGDRVKDW
                     TTHNEPIVVVLGQYLQQFHYPKLVDGKKAVQVAYHLNLASALAIAKYRELGLDEEGGR
                     IGIVLNLTPTYPASQAPADLEAARIAELWNNKLFLDPAIHGHFPEELVDILSRDKVIW
                     KTEPGDDQILRDNTIDFLGVNFYHPNRVQAPAISPSSVGDWKPERYFDSYALPGRRMN
                     LDRGWEIYPEALYDIAITIRDHYNNIPWFVSENGMGISHEERFLDENGQVQDDYRIDF
                     IRDHLECLHHGIEEGSNCFGYHMWTPIDCWSWSNAYRNRYGLIATDIHTQVKTIKKSG
                     EWFRMIVSQNGLS"
     gene            complement(15687..16559)
                     /locus_tag="U1404_000394"
     CDS             complement(15687..16559)
                     /locus_tag="U1404_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM5347377.1"
                     /translation="MTLLVCDLGGTTVKFGLYDKGRLFSKSSFRTPTTWEEMKSTILN
                     LKDHFSYRGLKGVALSCPGAVDTKKGIIYGRSAIPYIHRFPIQDELSALLELPVTIEN
                     DANCAALAELNLGVAQNTTSSIFFIIGTGVGGAIVQGRQLLRGEGQFGGEFGCMILKD
                     GLSMSKLVSPVRRARLFAQQYGYPDSFSGKELFTLAEFGDKRALEVITEIYDYLAIGI
                     YNVLVATNPELVVIGGGISARADLIEQIQQRLDALLVKTKMKDLIYRIEACEFRNDAN
                     LLGAASHFVERYGM"
     gene            complement(16664..17410)
                     /locus_tag="U1404_000395"
     CDS             complement(16664..17410)
                     /locus_tag="U1404_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003030780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5347378.1"
                     /translation="MEKKRVFLQVSMDDDFNEMNHREPAEEFCFYRAVAKGDLNAVRM
                     NCEQQRFLEMNGVGVLSKNPVTNIKYHFVITTAMITRFCGQNGLELEQAYRMSDFYIQ
                     KLDTIHTVQEVQSLHDEMVLHYTEKMRRYHQNDTNSKHVNACKEHIYKNLTERITVDA
                     IADELGVSSSYLSRLFKKEVGVSISTYIRDLKIESAKELLKYGEMSMIEIANHLSFSS
                     QSHFIQQFRDATGVTPKKYRDENAKLKWDR"
     gene            complement(17504..18088)
                     /locus_tag="U1404_000396"
     CDS             complement(17504..18088)
                     /locus_tag="U1404_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEM5347379.1"
                     /translation="MELADWANGEMFGCRWSPENVSFSVEGLRLTIAQDEKGELTGGE
                     WRTRESFGFGKYEVSMKPIKNTGVVSSFFTYTGPSDGTQWDEIDIEFLGYDTTKVQFN
                     YFINGVGNHEYLYDLGFDASEAFHTYGFEWRNDFITWFVDGEPVHTVTEDIPSTPSKI
                     MMNVWPGTGVDEWLGPYDRAIPLVAEYQQISYSP"
     gene            complement(18187..19287)
                     /locus_tag="U1404_000397"
     CDS             complement(18187..19287)
                     /locus_tag="U1404_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEM5347380.1"
                     /translation="MISEVVEETAEPSSEVETPKQEAFSTDFDTFDESTAQLADWSNG
                     SMFNARWTPSNVAFSDGIMTLTIDSDGKGGYNSGEWRTQQYYRYGKYEVRMKPISNPG
                     TVSSFFTYTGPSDGTQWDEIDIEFVGYDTTKVQFNYFTNGVGGHEHYYNLGFDASEEF
                     HTYAFDWKEDSITWFVDGVAVHTATTDIPTTPGKIMMNAWPGIGVDEWLKPFDGNVPL
                     VASYDWMKYTPNTVELPESKIENDEQMTNTTPEETSENKSDSNEGSSLSHEISDSNSS
                     STLHNDSNHQDENSVPSGQYQSNVTLEGKQEVKKTQPLPLLNNNVNQTNLSNQHKLPN
                     TSSQTGWLSMFVGSVLFIVATLVCSFTSRKRS"
     gene            complement(19559..20404)
                     /locus_tag="U1404_000398"
     CDS             complement(19559..20404)
                     /locus_tag="U1404_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003030789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5347381.1"
                     /translation="MSTNAQNLLRRIVAHFVLIILSFMCLFFFYILIVSATHSHSELQ
                     RGFSAFPGGYLWDNLMKVANDGTFPMFRGIINSLIVSGTTAAVCTYFSALTAYGLYVY
                     DFRFKKIAFTFIMAILVMPTQVTSMGFLRLITQMGMYDSFLPLIIPAIASPAVFYFMY
                     SYMKASLPLSMVDAARIDGSSEFRTFNTIVLPLMKPAIAVQAIFTFVGSWNNYFIPAL
                     VLQSKDKMTVPILIASLRGADYMNFDMGKIYTMILVAIVPIVLVYLFLSKFIIAGVTL
                     GGVKE"
     gene            complement(20416..21354)
                     /locus_tag="U1404_000399"
     CDS             complement(20416..21354)
                     /locus_tag="U1404_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5347382.1"
                     /translation="MKQKRKRINYGKWGYLFILPFFVTFFIFSFIPLVETVRYSFYEY
                     YRSGIREIGPTFIGLDNYISLLQSDILKYAGNTMLMWLMGFIPQIGIALLLANWFVDA
                     RLKLRGQGIYKVIIYLPNLIMASAFAMLFFTLFSTNGPINSIMTSLGIFKEPVDFMGT
                     SLGTRTLVAVMNFLMWFGNSTIMLMAAIMGINPDIFEAAEIDGCNSRQRFFYITLPMI
                     RPILAYTLITSIIGGLQMFDVPQILTNGQGAPDRTSTTLIMFLNNHLKSKNYGMAGAL
                     SVYLFVVSAFLCWFVYKMTNNELKLGRTKMKQKVKV"
     gene            complement(21405..22778)
                     /locus_tag="U1404_000400"
     CDS             complement(21405..22778)
                     /locus_tag="U1404_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5347383.1"
                     /translation="MNKKVSALLLTALASTALVACGSKSESAGTSQSEEGKVINIYSW
                     NDEFRQRVEAVYPEVKETSADGTITTLKDGTEIHWIVNPNQDGVYQQKLDEALLNQES
                     ATADEKVDIFLSETDYVNKYSSKEAGAALPLKELGIDPEKDLSDQYSFTKVTASDEDG
                     VQRGSTWQTTPGVIVYRRDIAKAVFGTDDPSEIGKKVEDWATAKETAKILKDKGYTIF
                     ASPADTFRLYGNSIKEPWVKAGETTINVAPEVMQWVKDSKEWLDAGYFTKTVKGQWTD
                     EWNKEMSSQAKNFAFLFPAWGIDFVLKPNWDGAEGSWAVTTPPQEYNWGGSYIHGAVG
                     TDNPKHVKDIILALTGNKENLLKISKDYLDFTNTQSGMQEAAKDENFKSDFLGGQNAF
                     EYFAPVADNIKIAPLSAYDQGSVELIQNNFNDYLQDKVSFEKAKENFEIAIKERYPEI
                     TEIKWPD"
BASE COUNT         6814 a         5262 c         4087 g         6699 t
ORIGIN      
        1 atctacctgc tcttcttctg atagactgct ttcaaatccc atataatagc gattttcggc
       61 ttgattttca aaaacagcca agtcttgaac aacaatgacc agatactggc tgagaaggaa
      121 ggaaccatgg tctggtagat gtcctaaagt cacattcttg ggcaagactt ggacaacttc
      181 catctccttt tcatcaaagg tgagggtttg accagcttga tactggactc ctttgctaaa
      241 aattgccact tggtcagatg ccaactggag tttttctccc gtcatctttt catagctggc
      301 ttgatcaagg acaaaaccga tcccaactcg gtcagagaaa ttcataccag cggcttcttc
      361 atccgtaaaa aatcttactt gctgatttgt cacctcagaa aaataggctt gctgataagg
      421 atagaccacc ttactttcaa caggaatatc tgtctcttct aagatagctt ccgcccactc
      481 ctcccacttc tccatttgag cttttgaagt ggtgggctgc ataccaacat caatcgaata
      541 gtcatttgga ttttgattgg caatataatc tttgccaccg atgtaaatat tgagtcctcc
      601 aaccatggtc accaagaaca tactggagag gatggtaatg gtcgcaagcc ctagagcatt
      661 tttccgcatg cggaaaatca agttggatac agaaatgaaa ttatctggct tataataata
      721 ggtctgacgg ttctttagcc agtttaagag actgataaca cctgcatgga agagcaggta
      781 ggtcccaagg ataaccagaa gagtcgctcc gaagaaactt ggaatagcct gcatcggact
      841 ggtcaccagc tgggcaatgg cgtagcctgc ccccaataag ataagagcta agagggtttg
      901 tagccagagg aagcccgttt tcttgtcccc tctcttctta ccttgaacca gtttgagtga
      961 gtcggtcaag cccaacttcc caatattaaa aaggctgacc aaggcaaaaa tcccaaagag
     1021 atagatgact acagttacca gacttttcaa ctggaaagtt gaagccaaga ccacaggcat
     1081 ctgcatgacc ttgagcaaga gggcatagaa gagtttatct agagccaagc ccagcaacaa
     1141 tcctgtcaaa atactactgg ctgcaaaaac tagattttct agaaaagtca tcaggaggag
     1201 gtgttttttc tccaatccta gaatactata gacaccaaac tcttttgacc gctgcttcat
     1261 gacaaaacta ttggcataga agaccatgat ggcaaccgcc aacatgacca caatcatacc
     1321 aaagcccaat accatggtta ccccatcggc tcccttgacc tgacctaaat caggatgaaa
     1381 ggcaagcgag gcaaaaatat aggcaatggc tgtggacaaa atggtcatca gggcataggg
     1441 aaaatagagt ctgcggttct ttttgagatt ggtcagagcc aatcgaacgg ttagtccaaa
     1501 catactactc acctcgattc gccataagtg tcaaggtatc ggaaatcaac tgatacattt
     1561 cctgactggt tctctcacct cggtagattt gattgtagag gatgccgtcc ttgatgaaga
     1621 gaacccgttt ggcacgacta gctgctactg tcgagtgggt taccatcaaa atggtttgcc
     1681 cctcttggtt gattttttca aaaatatcta gaagagttgc cgttgatttg gagtcgaggg
     1741 ccccagtcgg ctcatccgct aagagaattt ctggctgggt aatgatggca cgcgccaccg
     1801 caactcgctg ctgctgacca cccgaaatct catagggcat cttgtcttgc aaggtcgcaa
     1861 ttcccaggct attaagcgta tgaacgagtc gtttgttcat ctcatcagtc ggatagcgag
     1921 ataaaaccag aggcaagagc acattatcct tgactgagag ggtgtccaag agattgaaat
     1981 cttggaagac aaagcccaat ttctcccgac gaaagactgc cgcttccttg ctcttgatag
     2041 actgggtatc caatccgtta agcaagacct tgccctgcgt tggcttatca agggttgcca
     2101 aaatattgag caaggtggac ttaccagaac ccgactcacc cataatggcg acatattcac
     2161 ccttttcaac tgtaaaatga atatccttca aggcctcaac ctgacccgcc ttaaagcgag
     2221 aactatatat tttttgaaca tgttgtacat ctaagagtgg catcactgca acctcctttt
     2281 ctttttctac ctccattcta tcccatccgc cacccctcta ccatagcctt agctttcatt
     2341 tacgtgacag ttttgtaaga ttaatcaaaa atcaactcca cttctttgat accgattcgc
     2401 acctctgttc cccgacccac ttttgatttt agctttaggg aatagcccag ctccgcagca
     2461 attttccgtg agaggtagag ccccagaccc gaagattgct gggttctgcg gccattgaaa
     2521 cctgagaaac cacgctcaaa gacccgttcc aagtcactct cagcaatccc aattcccgta
     2581 tcgcgaatga ccaactcatc cccatctaga aaaatcgaaa cgcttccccc ctgacaatac
     2641 ttgagggcat tggataaaat ttgttctatc aagaggccca gccagcgttt gtcggtcttt
     2701 actgtcctat ccaactgccc caagtctaag ctggtattga cctgaatgaa aaagagggaa
     2761 tactttctta ctagatttct gaccagttca tccaaattaa ctgattcgat aaccaaatca
     2821 tcatgaaagg actgtaagcg gagatagttc aagaccagac ctgtgtattg ttcgatttta
     2881 aagagttctg tttctagctg atgacggact ggactactat ctacttcctt gaccaagagc
     2941 tgactggctg caatcggcgt tttcatctgg tgggcccaga gggtatagta gtcgtctaat
     3001 tctgtctgtt cctgtcgctg tttttctagg attttcttgt tctgaacttc tagccattgc
     3061 actttttcct gcaacaaacg ctcactggct gtcccagtag ccactttctg accacgccag
     3121 atttttccaa aacgagaaaa ttccctgaca aaatcccaga ggagggcgag gagccaacaa
     3181 atactgagga ggaggatggc atagaaaacc aagtttcttt tgatgtcaaa gaggctacta
     3241 taagccagaa tagccacagc aaaaacggcg taggctatca gaaaaatcaa gcgatgacca
     3301 agccatgagg tcaaaaatcc tggtactaat gagccaaaat catccttatt catgtgtcca
     3361 caccaggccg tagcctactc ctttcttggt cgcaatcaca tctggcagac ccagttctgc
     3421 caatttctta cgcaggcgag caatgttaac cgacaaagta ttgtcatcca caaaaatatc
     3481 actgttccag agttctctca tcagctcctc acggctgacc acttccttgc catgttcaaa
     3541 taaaacgcgt aaaatctgaa attcatttcg cgtcagctct tccacaacct gtccatagga
     3601 cacctgcatg gtctttaggt ctagggaaat ctcctcaaac cagagtaaac tttgttctcc
     3661 gacaaagtca taggttcttc tgagaagccc ctgtattttg gctaggagaa ccgtcatttc
     3721 aaagggcttg gtcacatagt catccgcccc catattgatc gccataacaa tatccattgg
     3781 ctggtcatgg gaagacagaa acataatggg cacacgggat gtcttgcgaa tttcctgaca
     3841 ccagtaatag ccattgaaaa acggcagacc aatatccagt aaaatcaaat ggggctgaaa
     3901 ctcttccatc tgttccaaaa ccatctgaaa atccttgacc tcttgcacct ggtaacccca
     3961 gtttatcaag tttttagcaa ctagttggct aatcgtttta tcatcctcga taagaagaat
     4021 tttctgcata actatctcct ttcatatcac tactatttat tatagcttac attggaacaa
     4081 atttgagtat ttttatatat ttacacaaga agtagactat aaaaccaggt catcagtggt
     4141 gcagatttgt cagaccaatc atatttcgtt atactagata aaaaaggaaa ggactgctat
     4201 gccgaattta ttaacctata ttgaagaaac tcaatacgat aatttttatg ataaacctat
     4261 caataagcta gatattctgg ctctgaccga actttcctac ctcccttttg ataatctggt
     4321 cccctactct tttacagaaa atggcgtacg acttgatcgg ttggcagcgg cctttgaaga
     4381 gacctacaaa aataatttcc ctcccttttc tatggtgacc aaaaaccgcc tagccttact
     4441 tggacttcta gccaaatcca aacgcttcaa atctatcaag gcatttggct tcgttgacga
     4501 ttatcagttg gaacaggaac aacaattctc cgctatcagc tatcgcctgg atagacagac
     4561 catcttgaca gcttttcgtg ggactgacga caccattatc ggttggaagg aagatttcca
     4621 catgacctat atggatgaaa ttcctgccca acgtgcagcg agtggctact tagaaaaact
     4681 tatgatgcag cagggggggc aattttatct ggccggtcat tcgaaaggtg gaaatttagc
     4741 cctctatgca gcatgccagc aagctacaga ccaacaggat agaatcctag ctatctatcc
     4801 ctttgattca cctggcttac acaaaaaaca cttggaagca cctagttacc aagctattca
     4861 ccaacggatt ttccctgtca ttccccagaa ttcaatcgtc ggtatgatgt tagaaacacc
     4921 agaaaacgct cagattgtcc agagtaatac cctcggcatt ctacaacata tcagtttttc
     4981 ttgggaggtt gacggaagcg acttcaaact agcccctgcc ctgaccagcg atagcctaca
     5041 aacagaccaa gccttaaaaa cttggacggc tagtctaaca gacgatgaat tacgagactt
     5101 cttcgatttg tttttcggca tcttcatcaa agcaggaatt gaacgtttta gcgacatcac
     5161 ggtaaatccc ctacagaaat tacaagaaat tgaccgactg agaaaagaaa tagctccaga
     5221 agaagccgaa atggtggaca aactcattcg gctcctcttt gatacccgtt atcaaatctg
     5281 gagggacaat attccaagcc ctgaaatctc tctaccagat tggtggaaac ttttccaaag
     5341 aaatacaact gaaaataaag gaaactagct caaccacctg agctagtttt ctttatcaaa
     5401 tcttcttaaa aattgggata atttttctaa tcctttgatt agagtttctt gttcacaggc
     5461 aaaacctaga cggacatagc cgtcacgttc aaaccgatta ccaggaacta ggagaacacc
     5521 atgttcttgc aagagttgca agcaaaaatc ttccataggc atatccactg caatcttgac
     5581 aaagctagtg gaaacaaccg ctggacggat ataggaaacg aggggttctt cctcaatcca
     5641 ttggtccaaa attgctaaat tttcttctaa aatgtgccga tttcgttcta gaatttcttg
     5701 ataatgggcc aaagctaatt gagccaccag atcgtcaaag acacctgcac aaatcatggt
     5761 gtaatcccga taatctctca gaatgtccgt cacttgatga ttggcagcca cccagccgac
     5821 acgaatacct ggcagagaat aagtcttgga taagctattt acagcaattc ctttatcata
     5881 gacttctata atagatggca catccagctc agaaaaggaa cgatagactt catctgatag
     5941 gatgtaagca ccaacttcac tagcaatttc cgccaattct tccaaataag ccctatccat
     6001 gacagcacca gttggattat tggcattatt gatgcaaatc atcttggtat tgggacgaat
     6061 gagctgacgc agtttttcca agtctggcaa ccagccattt tcctcctcaa tctgccacaa
     6121 atccacttct gctcccaaag actttggaat atcgtagagt tgttggtagg tcggataaag
     6181 ggaaatgaca tggtctcctg gctcaatcaa accatagaga accaacaagt ttgcccctgt
     6241 tgccccgttg gtctggagaa tttgttctgg cttgacgcct gtatagagtt gactaactga
     6301 ttttttaaat gctggcgaac cttctatcca gccatagttg agcttggtgc cctgcaattt
     6361 ctcataaaaa tcctcaggat tggttcccga caaggcaaat agttcctcca aagtcaatga
     6421 agaaatagac acccctgcta tatcataaat cgcgctattt tcatggacat tcagccattc
     6481 ctcaacgcca aaacgtggta atttcataag acttcctact tcaatttaat ctttccctat
     6541 tgtaccatat tctttcaaca attgtataaa tatgcgatat atcataaaag gaatattttt
     6601 acaattgaaa aagcagactt tctcaaacga gactgcctgc tctgcttttt tcccttaaaa
     6661 ctttcctaaa ttcgtcaagt ctttcttctc tggcatgact tccttgttgt cccagtgctc
     6721 gacaatcttt ccgtctttga ggcggtagat gtcaaagtgg gcatagtcct gacctgcaat
     6781 ccagactttc gagtaagcca ccacatagtc accctatcct atcaccttga agacaaagtc
     6841 gtagtcaaca gccttatcga caagatagtc cttataggcc gcaccgcctt gggcaatctc
     6901 ttggttgtgc tgaatcaggt ccgctgccac atagtcgtca aacttctcga tttccccatt
     6961 ttgaaggacg ttgaccaaga aacgacggac gattttcttg ttgtcctcgg tcttatctaa
     7021 gtcagtcagc tcaaagtctg cgtaaatcgg gtctgtttgg ccaatggttt ttggataggc
     7081 atcaatgaca tcccaatgct cgacgatacg accattttca tctgaacgga aaatgtccgc
     7141 cgtcacccac tcagcttcac cgtcattgag tttctggtgg acatggacga agacaaaatt
     7201 tccgtcttca atggcacgca caatgttaat ttcccgcttg ggattgcgtt tgaaaaagtc
     7261 ctcaaagaaa gccgcaaagc cctctttctc atcaggtaca cccgtactgt gctgggtata
     7321 gctgactccc atatagtttt catgaacttc cttgatttcg ccatcgcgaa tgccacgaag
     7381 gtaaagattt ttagcatttt ctagttgatg tgacatagta ttttctccta ttttaacaat
     7441 ccttcttgtt ctaaatattc cctcgccact tgctctgccg acttgccttc cacatcgacc
     7501 gcatagttca tctgggtcat ttcctcggtc gagattttgc ctgccaagac ccctaggact
     7561 tgctccaact cgggatattt ctctaaggtt tctttggaca atagcggagc ggcctggtaa
     7621 ggtgggaaga gctgcttgtc gtcttctagg attttcaatt tgtaaatgac taccttgctg
     7681 tctgtagaat atgcttcgat aatctgcaca ttaccactct taatagcttc gtagcgaagg
     7741 gctggctcca tggtcttgac attgagttgg agattgtaga gattttttag accgatatta
     7801 ccatcttcgc ggtcgttaaa ctctaatgag aatcctgcga cagctgtctg ctgcactttt
     7861 gccaaatccg aaatcttttc aatgccatga tcttgagcat aatcttccgt tacagccaaa
     7921 gcataggtat tctggaaagc cattggtgct aggtaaacca agccatcctg ctccaaaatc
     7981 gcctctttag cataagtgta aacctcatca gaattagtag ataaatccat tgatgaattt
     8041 ttcaaaagag tacttgtaat ggtccctgtg tactcaggat aaatatcaat agaacctgat
     8101 ttgagtgcct cataaaggaa gctagtcttt ccgaaattag gttttatctc caccttgatg
     8161 tctgtccggt cctcaatcaa caacttatac atattgatga gaatttcagg ttctgcaccg
     8221 agcttccctg caatgaccaa ctgttttgtg gaaaagttaa gcatgggaac ataactagct
     8281 ccaacagtaa ataaagtcac caatagagcc aataaaattg tcttgggttt cttgtcctgc
     8341 aacagacgaa tgccataacc aaaaagcact gcaaggacag ccgacgatac cgcaccaatc
     8401 aaaatcaagg ctgaatcatt gcggtcaatt ccaagtagaa taaaggagcc caggccccca
     8461 gctcccacca aggctgccag agtcgccgtt ccgataatca taatggaagc cgtccgaatc
     8521 cctgacatca aaataggcat ggcaagagct aacttaaatt ttttcaactt ctcccattta
     8581 ttcataccaa aagcggttgc tgcttcttcc agagaagggt cgatttctcc aagtcctgtc
     8641 aatgtcccct gcaagatagg aaagatagca taaataacaa gtgctactac tgctggcaag
     8701 gttccgattc ccataaaagg aatgaaaaga ccaagcaaag caagggatgg aatagtttgg
     8761 aagatacctg ttatttgcag actccactca gtcaagcgtt ttttactaga tagaatcagt
     8821 cccaaaggta ctgcaattgc aatcgcaata atcaaagcta gaagggagat gcgaaggtgt
     8881 tcaaaaagag cgattcccca ctcgtccttg cgttctataa aggtttcaaa taggttcatt
     8941 acatacctcc tcgagctctg ataaattcct tgacaaaatc attggcagga tgattcctca
     9001 attcatcagg acttcctaat tgcacaactt gtccatcttg catgagacag atgcgatccg
     9061 ccaatttaac cgcctcatcc atatcatggg taacgaaaac cgttgtcatc ttgaattcct
     9121 catgtaattc cttaatcaag tcctgcaact gagccttact gattggatcc agagctgaga
     9181 aaggttcgtc catgagtaac actttcggat tggcaatgat ggcccgcaaa atcccgatcc
     9241 gctgtttttc tcctccagac aagtccttgg gcaaacgatc cagatagctg tctggttcca
     9301 agccaacctt ggtcaagagc tctctcgtcc tcgtcagggt ttcttccttg cccaaacctt
     9361 tcatttcagg aataagagaa atgttttcag ctaccgtcat atttggaaaa agggctatct
     9421 gctgaagaac ataacctgtc tccaaacgta attcacgcag gtcgaaatcc ttaagtcgct
     9481 taccttgaaa aaaaacctct ccctcggtct gctcaattag acggttaatc aatttcaacg
     9541 tagttgtctt tccgctacca ctcggtccaa tcaagacaaa gaactcccct tcttgaatat
     9601 caaaggtcaa atttttcaag attggtccgc taaccttaca ggtcagggat acattttgat
     9661 aatcaatcat catcttctcc ttttaaaata gccatgagac tctgactgta gcgctgaatt
     9721 aatcctagca taagctcctg ttcctcctga ctgagttgag acagcgcctt attttccgcc
     9781 tcctctaagg gatccaaaat gcgactagca aattgttgcc cctcctctgt caatttaatt
     9841 ttcttatgtc gcttatctgc tggattctcc tctaaaacta ccaggcctcc atccaaaaat
     9901 ttctttacag tagcattgac aacttgtttg cttgaatagg tcttcttact gacccagttt
     9961 tgcgtcacac ctccgggatt ataataaatc cacatgagaa tggataaaca ttttgcattg
    10021 agcccatgcc ggcgagcgta gccctcatag agcccgactt gctggtcaaa catacgagcg
    10081 taatccttac tccttttctc aacttccatt atccttcccc ctcctcagtg agcacaacta
    10141 ccttactaaa agtctctggt ctactagtgt tcaaaacaac aacaattttc acaacgactt
    10201 cctcctgtaa tcatgttagt caatattttt tactatttta ccaaaaaaag aaaaatagtc
    10261 aatcattttg actattttga aacgtcaact accttattat agattcccgt cttcatccac
    10321 tcaaacatat taaatccctg aaattatctg cttttaattt acacaaaaca aatgataatc
    10381 agataacaaa actagcctag aaaattctaa gctagtttca ttttatcctt caactgtttc
    10441 tgaggcagtt tcgcttgcta cttctgaaac ggtttctgat acaggttcga tgatgacatc
    10501 atcaattgta agctcaatat cttcagacac aactacagca tcctcaatat cttcttctgt
    10561 caaatccact gtcggagctt tagcagtttt tgccttgata gcttccaaaa tgtcagccgt
    10621 tgacaagttt tgttccgcaa ttttttcctt gatttgctca aaggtttcca aggatttttc
    10681 cttaccagac ttgaccaaat cttctactgt caattcacca gtttcaagtt gagtttttac
    10741 ttcagtaaat cgttcagtcg cttgtttgcc taaatcttgt gccttagtga caaaatcagc
    10801 attgatttct tcatggtttt ctttatagtc attagcaaag tttacaactt tttctttgac
    10861 tgttttacca gtcttacttg ctagaaaagc agctgcagca gctccgcctg ctgcccctaa
    10921 caaaaggcta gtccacacgc tactagattt ttttaccatt tttttctcct ttcttaccta
    10981 agagagatga gagagttgac agagctgaaa gagctccgcc agcttttaca gtacttgctc
    11041 cagcagactt ggctttgact gtcaaatcac gcgctgaagc attcaaatct gatacagaag
    11101 ttgacaagtc agctactgct acaaaaagag gatcaagggt tgaaaccttg ccatttacat
    11161 cttcgactaa aacattggtt ttagccaaaa gctcgttggt ctgatagaga gtcacattga
    11221 catcgctggt caagacctta agcgtttgct gggcttcatc tgtcaccgta cccaattttt
    11281 tcaacaacaa aacaatatat actgccaccg ccgcgatcga caaggcaata atcaagacag
    11341 aaatttcaat aatcatatct tctcctttag ggttgataga atggaataga agactttctt
    11401 ctccgcaaca caaccatgat aataccaacg aggattaaca ccccagatag ccattgtgaa
    11461 acacgtattc ccaggaacat gaggctgtcc gtccgcaagc cttctatcaa aaggcgacca
    11521 caaccatacc agactaggta gaaagctgca atttctccct gtttaaagaa ttttggccgt
    11581 ctacgtaaca cacaaaccaa gccaaagcct agcaaattcc agagagactc aaacaagaag
    11641 gttggttgac ggtaggcacc atcaatatac atctggtctc ggataaaggc tggcaggtag
    11701 ttcaaacttt ctactgcttt accataggcc tcttggttaa agaaatttcc ccaacgacca
    11761 attgcttgag caatcatgac cgatggcgct acaatatcca aaaaatccag ggtattaata
    11821 aagcgatact gggtaaagaa ataaaggacg attgcacctg taatcaaacc accatagatg
    11881 gcaataccac cgttccagat agcgaagata gataaaatgt tatccttata ttcactccat
    11941 gaaaaggcga cgtagtaaat ccgtgcccct aggatagaaa gcggaaatgc gattagaata
    12001 aaatctaaaa tatcatcctg acgaattttc tttcgcggac cctcttttgt cgccagataa
    12061 acacctagaa tcagaccaag caaaatgcag attgcatacc aacgaatttc taagggacct
    12121 aatttaatcg caataggatc catattaagc ctcttctcta ttgtgttcaa ttagattaga
    12181 caagcgttct tcgaagatct tcgttgcatc aaaccccatc tgtttggcac ggtagttcat
    12241 ggctgctgct tcaattacga cagaaatatt tcgaccggtt tttacaggaa tacgtatttg
    12301 tggaatagca attcctgcta tttcgatagt atcgccagag tttcccaaac ggtcaaatac
    12361 cttacctgtt tcaaaatttt caagataaac agctaattgc acttctgatg aatctttcac
    12421 ggcactagca ccgtatagac tcatgatgtc gataatgccg actcctcgaa tctctaataa
    12481 gtggcgcaga atttccgcag gctcacccca gagagtaaca tcgtcttttg catagacatc
    12541 aacacggtca tcagccacca atcggtgtcc tcgtttaacc aactcaagac cagtctcact
    12601 cttaccgata ccagaatcac cctggataag cacacccata ccgtaaatgt ccatcaagac
    12661 accgtgtaca ctcgtccgct gagccaggcg actatccaag taagaagaca attctcccga
    12721 tagacgactg gttgctgtct tgcttcggca gatagcaatt tgtttttctt ttgcagcctt
    12781 gtacatctcc tcagggattt ccaagccacg tgccactatg acaacagggg tttctggctg
    12841 gaacatctga gaaagaacct gatagcggtt atgggcagtc atggccatca aataagacca
    12901 ctccttcatc cctatcaact ggatgcgctc tggagcatag taatcaaaat agccagtcat
    12961 ttccaatcct ggtcgggtaa tatctgccgt cgtaatttgc ttttgcagga gctcttctgt
    13021 actgtaagca cattcaatcc gcagattatc gaccaaatct ttcacataaa cggtcatttc
    13081 ttccctcact ttcagtttta ttatattata ccataagcta ggggttgggg gaaaaacaag
    13141 gggctgattt ggtaaaaaga atgagttctt tctttttctc acaaaattag caaaacttcc
    13201 acagattaaa tgcacttctc ttccttcgct acatattttt aacaaatctg ttatacttta
    13261 tatagattaa tacttactat taaggagaaa atcatggaac cattgtttct cacacctgtt
    13321 atgcacgaaa aaatttgggg aggcaatcgc ctaaggacca actaccacta cgacattcct
    13381 agtgaaaaga ctggggaatg ttgggcaatc tctgcccacc caaacggcgt aacaactgtc
    13441 tcaaacggtc aatataaagg aagaggactg gatgacctct ataagaatga aaaacattta
    13501 tttggcaatt caacagatga tgtctttcca ttattaacaa aaatccttga tgcagacgat
    13561 tggcttagcg tccaagtcca tcccgatgat agctatggct tagctcacga aggggaactg
    13621 ggcaagacag aatgttggta cattttggaa gccgaagacg gagctgagat catttatggt
    13681 cacaatgccc aatccaaaga agaactccgt cagcaaatcg aagccggaga ttgggacaag
    13741 ctgttgaccc atgtacccgt caaaaaaggt gatttcttct ttgtaccaag cggcaccatg
    13801 cacgccatcg gtaagggaat cctgatttta gaaactcaac aatccagtga tacaacctac
    13861 cgtgtctatg actttgaccg ccgtgacgat gcaggcaacc tccgtgaact acacattgag
    13921 aaatcgattg atgtactgac catcggacct gttgctaact ccacacctgc ccacctcaaa
    13981 gcaggcaatc ttgactcgac acttctggtc gccaatccct tctttaccgt atataaatgg
    14041 aatatccagc aagaaattaa aatggaacag acagttcctt acctgcttgt cagtgtcatt
    14101 gaaggggaag gtaccatcca agtcggtgaa accagctacc cacttcaaaa aggaagccac
    14161 tttattctac cagccaatgt gacagactgg acatttacag gacaaatgga catcatcgca
    14221 atccacgcga actaaagata aatgaaaacc gttagaatac tgccctaacg gttttatttt
    14281 tttatgatag tccattctga ctgacaatca ttctaaacca ctctcctgat tttttaatgg
    14341 tcttcacctg tgtatggata tctgttgcaa tcagaccata acgattccga taagcatttg
    14401 accaagacca acaatcaatc ggcgtccaca tatgatagcc aaaacaatta cttccttctt
    14461 caataccatg gtgtaagcat tctagatgat ctcggataaa gtctatccga tagtcatctt
    14521 gtacttgacc attctcatct aaaaaacgtt cttcatgaga aatccccata ccattctctg
    14581 agacaaacca tggaatatta ttataatggt cacgaatagt gattgcaata tcatacagtg
    14641 cttctggata aatttcccaa ccacgatcca aattcattct acgcccaggt aatgcgtaac
    14701 tatcaaagta tcgttcaggc ttccagtcgc ctactgaact tggagaaata gctggagctt
    14761 gaacccgatt tgggtgatag aaatttaccc ccaaaaaatc gatagtatta tctcttaata
    14821 tttggtcatc acctggttcc gtcttccaaa tgactttatc tcttgataat atgtcaacta
    14881 attcctctgg aaaatgccca tggatagcag gatcaaggaa taatttatta ttccacaatt
    14941 cagcaatccg tgctgcttcc aaatctgctg gtgcttgtga ggctggataa gtcggagtca
    15001 agtttagaac aattccaata cgacctcctt cttcatcaag acctaattca cgatattttg
    15061 caattgctag tgccgaagca agattcaaat ggtaagcgac ttgtacagct ttttttccat
    15121 caacgagttt tggatagtga aactgttgca gatattgacc taacacaaca acaattggct
    15181 cattatgagt tgtccaatcc tttactcgat caccaaagag tttgaatgct tgttcagcaa
    15241 aaccaacaaa caggtcaaca acacgtcgag attcccaacc tccatattta tgatacaatt
    15301 ctgctggtag atcaaagtga tgcaatgtta caattggtct aatcccattt tcaataaaac
    15361 agtcaaacac ctgattataa aactcaacag cagcctgatt gacagtattg gtttccaaat
    15421 catcaatcag acgagtccac tgaatagacg ttcgaacact attaagtcca acttctctca
    15481 tcattgcaat atcttcacgg aaactgttgt agaaattcga ggttacatct ggaccaacac
    15541 cttcgtaaaa agcttctggc tcaatatcat accaataatc aaaaacattc ttgtgtttct
    15601 tataaaaacg tccctcactt tgcggacctg aagttgcagc cccccaccaa aaattagttg
    15661 gaaatttttt cattatttac tcctttttac ataccatatc tttcgacaaa atgcgatgct
    15721 gctccaagca aattggcatc atttctaaat tcacaagcct caatacgata gattaaatcc
    15781 ttcatcttcg ttttcactag taaggcatcc aatcgttgct ggatttgttc aatcaggtct
    15841 gctctagctg aaattccacc tccaatcact actaattctg gattagtagc caccaacaca
    15901 ttatagatgc ctattgccag gtaatcatat atttctgtta ttacctctag agccctcttg
    15961 tcaccaaatt cagcaagagt aaataactct tttcctgaaa aggaatctgg gtaaccatac
    16021 tgttgagcaa ataatcttgc tcgacgaact ggactcacta acttgctcat acttaaccca
    16081 tcttttaaaa tcatacaacc aaattctcca ccgaattggc cttcacctct tagaagctgc
    16141 cgtccttgta ctatagcacc tccaacaccc gtaccaatga taaaaaagat agatgaggtt
    16201 gtattttgtg ctacccccag atttaattca gctaaggcag cacagtttgc atcattttca
    16261 attgtcacag gtagttccaa taatgcactc aactcatctt gaatcggaaa acgatgaata
    16321 tagggaatgg cgcttctgcc gtaaataatc ccctttttag tatcaactgc tcccggacaa
    16381 gataatgcaa ctcctttcag tcctctataa gaaaaatggt cctttagatt tagtatggtt
    16441 gacttcattt cttcccaagt ggttggtgtc cgaaatgaag atttactaaa gagtcttcct
    16501 ttatcataaa gaccaaattt gactgttgtt cctcccaaat cacatactaa taatgtcata
    16561 ttcttcttct ttctatttct cattgaagaa tatccacaaa atccattcaa tacatgatag
    16621 aaaaaagcct gagatacttt caagctttta tcctattgac aacctaccta tcccacttca
    16681 actttgcatt ttcatctcta tacttcttag gtgtcactcc agttgcatct ctaaattgtt
    16741 ggataaaatg actttgtgag gaaaaagaaa ggtggtttgc aatttcaatc atggacattt
    16801 ctccatattt cagcaattcc tttgcagatt caatttttaa atctcgaata taagtactaa
    16861 ttgagacacc tacctctttt ttaaaaagac gagataagta actcgatgat actcctagtt
    16921 catctgcaat ggcatcaact gtaatccgtt ctgttagatt tttataaata tgctccttac
    16981 atgcattgac atgttttgaa ttggtatcat tttgatggta tcgccgcatc ttttctgtat
    17041 agtgcaacac catttcatca tgcaaacttt gcacttcttg tacggtgtga attgtatcta
    17101 atttctgaat ataaaagtca ctcatgcgat acgcttgctc taactccaat ccattttgtc
    17161 cacaaaatcg agtaatcatc gctgtcgtta tgacaaagtg atacttgata ttggtcacag
    17221 gattctttga taaaacaccg actccattca tctctaaaaa gcgttgttgc tcacaattca
    17281 ttcgaaccgc gtttaaatct ccctttgcta cagcacggta aaaacagaat tcttccgccg
    17341 gttctcgatg attcatttca ttgaaatcgt catccatcga aacttgtaaa aataccctct
    17401 tcttttccat actcattctc cactcgatta tttaaggaat gctttacgct ttcattatat
    17461 cattttttgc tttggaagaa caagttgaaa tttacatgaa tatttacggt gaataggaaa
    17521 tttgctgata ttcagctaca agaggtattg ccctatcata aggacctaac cattcatcta
    17581 cacccgttcc aggccataca ttcatcataa ttttgcttgg tgtacttgga atatcttcag
    17641 ttactgtatg aacaggctct ccatctacaa accaggtaat aaaatcatta cgccattcaa
    17701 atccataggt gtgaaacgcc tcactagcat caaaaccaag atcatataga tattcatgat
    17761 ttcctacacc atttatgaag taattaaatt gaacctttgt tgtatcatac cctaaaaatt
    17821 caatatcaat ttcatcccat tgtgttccat cgcttggacc agtgtaagta aaaaatgaag
    17881 aaacgacacc agtatttttg ataggcttca ttgaaacttc atatttacca aatccgaaag
    17941 attcacgagt acgccattct ccacctgtaa gctctccttt ctcgtcttga gcaatggtga
    18001 gacgtagacc ttcaacacta aatgagacat tttcgggaga ccaacgacag ccaaacattt
    18061 caccatttgc ccaatctgct aactccatcg tatctgaatc atattcttga aacgtctcca
    18121 tgtaagacac tttattattt tcatgtgtgt tttctatcga atgtgtcatc tttcaccttc
    18181 tcttttctat gagcgttttc gactagtgaa tgagcatact aacgtagcta caataaataa
    18241 tacactccct acaaacatag ataaccatcc cgtttggctt gaggtatttg gaagtttatg
    18301 ttggttgctt agattagtct gattaacatt gttattcagt aatgggagag gttgagtttt
    18361 tttcacctcc tgcttgcctt ccaacgttac attggattgg tactgacctg aaggaacact
    18421 attctcatct tggtggtttg aatcattatg taaagttgat gaactgtttg aatcggatat
    18481 ttcatgggaa agtgaagaac cttcatttga atccgacttg ttttctgaag tctcttcagg
    18541 tgtcgtattt gtcatctgtt catcattctc tattttagat tccggtaatt caactgtatt
    18601 cggtgtatac ttcatccaat cataagaagc aaccaaaggc acgtttccat caaatggttt
    18661 tagccattca tccacaccaa taccaggcca ggcattcatc ataatttttc caggtgtagt
    18721 tggaatatct gtggttgctg tatgaactgc cacaccatct acaaaccatg taatagaatc
    18781 ctctttccaa tcaaacgcat aggtatgaaa ttcttcagag gcgtcaaatc ctaaattgta
    18841 ataatgttca tgaccaccta caccattggt aaaatagttg aactgaactt ttgttgtatc
    18901 atatccaaca aactcaatat caatttcatc ccattgtgtg ccatcacttg gacccgtata
    18961 agtaaagaag gaagaaactg tcccaggatt actgattggt ttcatgcgta cttcatattt
    19021 tccataacgg taatattgtt gggtacgcca ttcaccacta ttgtaaccac cttttccatc
    19081 actatctatc gtaagtgtca taataccatc tgaaaatgcc acatttgaag gtgtccatcg
    19141 tgcattgaac attgaaccat tagaccaatc tgccaactga gccgtactct catcgaaagt
    19201 atcaaaatca gtcgaaaatg cttcttgctt aggagtttca acttctgatg atggctccgc
    19261 ggtctcctct actacttctg aaatcatttc attctcttgg ctagctgttg tagcaggcaa
    19321 tgtttcatcc aattgacttg ttacagctac ttctgtttcg gttgttgcag tttccgtact
    19381 caatgaagca gtttcagaag attccgatat aatttgttct gaagttggta atagttgact
    19441 agccacatct tcagctaaaa tctgttttcc attaactgct acgctacaga tagttgatgc
    19501 aacacacaac caagatagaa ctattttctt tgacataaac tgtctcctta aaattgtttt
    19561 attctttgac accgccaaga gtcactccag caatgataaa tttggaaagg aagaggtaaa
    19621 ccagcacaat cggtacgatg gcaactaaaa tcatagtata aatttttccc atatcaaaat
    19681 tcatatagtc tgcaccacga agggacgcaa ttaatatcgg aacggtcatt ttatccttag
    19741 attgaagaac aagggctggg atgaagtaat tattccatga acctacaaat gtaaagattg
    19801 cttgaactgc gatagctggt ttcatcagag gaagaacaat cgtattaaaa gtacgaaatt
    19861 cacttgaacc atcaattcgc gctgcatcaa ccattgacag tggtaaagag gccttcatat
    19921 agctatacat aaagtagaag accgctggcg aggcaatagc aggaataatt aatggaagaa
    19981 aactatcata catacccatt tgggtaatca atctcaggaa acccattgaa gttacttgag
    20041 tcggcataac tagaatagcc atgataaaag taaaggctat ttttttaaat ctaaagtcat
    20101 acacataaag cccataggct gttaaggctg agaaataagt acaaaccgct gcagtagtac
    20161 cagaaacaat caaactattg ataatccctc taaacattgg gaaagtccca tcattagcaa
    20221 ctttcatcag attatcccaa agatatcccc cagggaaggc agaaaatcct ctttgcaact
    20281 ctgaatgaga atgtgtagca ctaacaatca gaatataaaa gaagaaaagg cacataaatg
    20341 atagtataat caatacaaaa tgtgccacaa tacgccgcaa gagattctga gcatttgttg
    20401 acatattcta acctcctata cttttacttt ttgtttcatc tttgtacgcc caagctttaa
    20461 ttcattattt gtcatcttat agacaaacca acacaagaac gcactaacta cgaacagata
    20521 aacagatagt gcaccagcca tgccatagtt cttactcttc aagtgattat ttaaaaacat
    20581 aatgagagtt gtagaagttc ggtcaggagc tccttgtcca ttagtcagaa tttgtggaac
    20641 atcaaacatt tgaagtcctc caataatgga tgtaatcaac gtatatgcta gaatcggacg
    20701 aatcattggt aacgtaatgt aaaagaaacg ttgtcggcta ttacaaccat caatctctgc
    20761 tgcttcaaaa atatctggat taatccccat gattgctgcc attagcatga ttgttgaatt
    20821 accgaaccac atcagaaaat tcatcaccgc aactaaagta cgggtgccaa gagaggtacc
    20881 cataaaatca actggttcct taaatatacc taatgaagtc attatcgaat taataggacc
    20941 gtttgttgaa aaaagggtaa agaaaagcat ggcaaatgca gaagccataa ttaaatttgg
    21001 caagtatata attaccttat aaattccttg tccccgtaat ttaagtcttg catcaacaaa
    21061 ccagtttgct aaaagcagag caattccaat ctgaggaata aagcccataa gccacattaa
    21121 catggtattg ccagcatatt ttagaatatc ggactgtaat aaactaatat aattatcaag
    21181 accaataaag gtcggcccaa tttctctaat tcctgatcga tagtattcat aaaaactata
    21241 tcgcacagtt tcaactaatg gaatgaagga aaaaataaag aaggtgacaa aaaacggtaa
    21301 gataaacaga taaccccatt tcccgtaatt tatacgttta cgtttttgtt tcattctgtt
    21361 actcctttta gagtaaggcg gtgcaacatg caccgctact ctctttaatc aggccattta
    21421 atctctgtga tttctggata acgttcctta atggcaattt caaagttttc ttttgctttt
    21481 tcaaagctaa ccttatcttg tagataatca ttaaagttat tttgaatcaa ttccacgcta
    21541 ccttggtcgt aggcagataa cggagcaatc ttaatattgt cagcaactgg agcaaaatat
    21601 tcaaaggcat tttgtccacc aaggaagtca gatttgaaat tttcatcttt cgctgcttct
    21661 tgcataccag attgagtatt tgtaaagtca agataatctt ttgaaatttt caagagattt
    21721 tctttatttc ctgtcaaagc taaaataata tcttttacat gtttaggatt gtctgtacca
    21781 actgctccat ggatataaga accaccccag ttgtattctt gtggtggtgt cgtcactgcc
    21841 caagaacctt cagcaccatc ccagttcggt ttcaagacaa aatcaatacc ccatgctggg
    21901 aataggaacg caaagttctt tgcttgggag ctcatttcct tgttccattc atcggtccac
    21961 tgacctttaa ctgtcttggt aaagtagccg gcatctaacc attctttaga gtctttaacc
    22021 cattgcataa cctctggtgc aacattaata gtggtttctc cagcttttac ccagggttct
    22081 ttgatactat ttccatatag acggaaagta tcggctggag aagcaaaaat tgtatagcct
    22141 ttatctttca atatttttgc tgtctcttta gcagttgccc aatcctctac cttcttacca
    22201 atttcagaag gatcatctgt accaaaaaca gcttttgcta tatcacggcg gtacacgatt
    22261 acccctgggg tggtttgcca tgtcgaacca cgttgaaccc cgtcttcatc agatgctgtt
    22321 actttagtaa aactatattg gtcagataag tctttttctg gatcaattcc aagttccttc
    22381 aaaggaagag ctgcaccagc ctcttttgat gagtatttat taacatagtc ggtctcagag
    22441 agaaaaatat caactttttc atctgcagta gctgattctt gatttagtaa tgcttcgtcc
    22501 aatttttgtt ggtaaacacc atcttggttc ggattgacaa tccaatgaat ctctgtccca
    22561 tcctttaagg ttgtaatggt tccgtctgca gaggtttcct tcacttcagg atatactgcc
    22621 tctacacgtt gacgaaattc gtcattccaa gaatagatat ttattacttt accttcttct
    22681 gattggcttg taccagctga ttcggacttg gagccacagg caacaagtgc agttgatgct
    22741 aacgcagtca ataataaagc gcttactttt ttgttcatgt ctcttctcct tttagaagtt
    22801 ttctttgttt ttatgaattc attatagcta gaaagagtgg ggtattatat taaatatttt
    22861 ca
//
LOCUS       DASGCC010000015        22423 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.015, whole genome shotgun sequence.
ACCESSION   DASGCC010000015 DASGCC010000000
VERSION     DASGCC010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22423
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.015"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            90..272
                     /locus_tag="U1404_000401"
     CDS             90..272
                     /locus_tag="U1404_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HEM5347384.1"
                     /translation="MPFVRIDLFEGRTEEQKIALAREVTEVVSRNTNAPKEAIHVFIN
                     DMPEGTYYPQGEMKRK"
     gene            complement(322..2154)
                     /gene="lepA"
                     /locus_tag="U1404_000402"
     CDS             complement(322..2154)
                     /gene="lepA"
                     /locus_tag="U1404_000402"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017645216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEM5347385.1"
                     /translation="MNLEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSRE
                     MQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPIINKIDLPAADPERVRQEIEDVI
                     GLDASEAVPTSAKAGIGIEEILEQIVEKVPAPTGDVEAPLQALIFDSVYDPYRGVILQ
                     VRIVNGVVKPGDTIQMMSNGKTFDVTEVGIFTPKAIGRDYLATGDVGYIAASIKTVAD
                     TRVGDTVTLAKNPASEPLAGYKQMNPMVFAGIYPIDSNKYNDLREALEKLQLNDASLQ
                     FEPETSQALGFGFRCGFLGLLHMDVIQERIEREFNIDLIMTAPSVVYHVNMTDGEMID
                     VANPSEFPDPTKIATIEEPYVKAQIMVPQEYVGAVMELAQRKRGDFVTMDYIDDNRVN
                     VIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRSSKLVKMDILLNGDKVDALSFI
                     VHKEFAYERGKIIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDEDDKK"
     gene            complement(2250..2663)
                     /gene="ndk"
                     /locus_tag="U1404_000403"
     CDS             complement(2250..2663)
                     /gene="ndk"
                     /locus_tag="U1404_000403"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEM5347386.1"
                     /translation="MERTFFIIKPDALKRGLAGQILSRIERRGFQIRDLKMVTATEEL
                     ISQHYDHLTDKPFFPQLVQYMTSGPMIAGIIEGPEVIKSWRDMMGATNPVNALPGTIR
                     GDFATAPVEGIVANVVHGSDSAEAAEREIGLWLGK"
     gene            complement(2686..3273)
                     /locus_tag="U1404_000404"
     CDS             complement(2686..3273)
                     /locus_tag="U1404_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002915299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEM5347387.1"
                     /translation="MEINTHNAEILLSAVSKAQYPGDDIPEIALAGRSNVGKSSFINT
                     LLGRKNLARTSGKPGKTQQLNFYNIDDKIRFVDVPGYGYAKVSKTERAKWGKMIEEYL
                     TTRENLRVVVSLVDMRHEPSADDVQMYDFLKYYEIPVIIVATKADKIPQGKWNKHESM
                     IKKKLDFDKNDQFVIFSSETRHGYDQAWDAILSNI"
     gene            complement(3329..4555)
                     /gene="clpX"
                     /locus_tag="U1404_000405"
     CDS             complement(3329..4555)
                     /gene="clpX"
                     /locus_tag="U1404_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEM5347388.1"
                     /translation="MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEI
                     IREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINFQDSRD
                     ENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
                     LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVA
                     SVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDE
                     KESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTL
                     LSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRV
                     TKAAVDGKEKPLLETA"
     gene            complement(4753..5265)
                     /locus_tag="U1404_000406"
     CDS             complement(4753..5265)
                     /locus_tag="U1404_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM5347389.1"
                     /translation="MTKKIVAIWAQDENGLIGKGDRLPWSLPADLAHFKETTIGHTMV
                     MGRITFDGMGKRALPNRHTIVLTTDKTYQLESERITILHSVEDVLDWYNKQEQTLFVI
                     GGGQIFTAFAPYIETLIVTDIHGQFNGDVYFPKAFPMEKFQLQSANLRPKDEKNPYDF
                     TIKTYERRDG"
     gene            complement(5603..6442)
                     /locus_tag="U1404_000407"
     CDS             complement(5603..6442)
                     /locus_tag="U1404_000407"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015632084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEM5347390.1"
                     /translation="MTKADIIFKENIRKIMEEGVFSENARPRYKDGNVANSKYVTGAF
                     AEYDLSKGEFPITTLRPIPIKSAIKEILWIYQDQTNDLSVLQEKYGVQYWNDWEVEGT
                     GTIGERYGAIVKKHDIISKILKQLEENPWNRRNVISLWDYEAFDQSAGLLPCAFQTMF
                     DVRRVDGEIYLDATLTQRSNDMLVAHHINAMQYVALQMMIAKHFGWKVGKFFYFINNL
                     HIYDNQFEQAEELLRRTPSEVEPRLVLNVPDGTNFFDIRAEDFELVDYNPVKPQLKFD
                     LAI"
     gene            complement(6812..7090)
                     /locus_tag="U1404_000408"
     CDS             complement(6812..7090)
                     /locus_tag="U1404_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347391.1"
                     /translation="MKQVNMSKIINYLTILGLLILLSAFFLDNWIRDWFFPSSWGNVA
                     TMLILPLLGTLILILSIYYKKLWTGLISIFLMISFPLIFGIGYFIFGP"
     gene            complement(7217..8176)
                     /locus_tag="U1404_000409"
     CDS             complement(7217..8176)
                     /locus_tag="U1404_000409"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEM5347392.1"
                     /translation="MSKKIIGIDLGGTSVKLAILTTEGEIQEKWSIKTNILDDGSHIV
                     PDIIDSIQHRFETHGLTKDNFLGIGMGSPGVVDSEAGTVIGAYNLNWKTLQLVKDQFE
                     SALGLPFFIDNDANVAALGEQWVGAGNNNPNVVFMTLGTGVGGGVIAAGNLIRGVKGA
                     GGELGHITVDFDEPFACTCGKKGCLETVASATGIVNLSRRYADQYAGDAKLKQMIDDG
                     QDVTAKDVFDLAKEGDDLALIVYRHFSEYLGVACANIAAVLNPAYIVLGGGVSAAGEL
                     LLDGVRKVFAENSFPQIKESTQIVLATRGNDAGVLGAASLVLK"
     gene            complement(8272..8607)
                     /locus_tag="U1404_000410"
     CDS             complement(8272..8607)
                     /locus_tag="U1404_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347393.1"
                     /translation="MKVLVMSYMVIYLLVTLGAALFSYLKTKKMNTLRLILTILSMIL
                     LTSTLYFYSQSYHDLQMVGFALGFTFISTLFLYNGTKEGSNFTTVMLFSIGRFILHIQ
                     FLILLYLFR"
     gene            complement(8608..10476)
                     /locus_tag="U1404_000411"
     CDS             complement(8608..10476)
                     /locus_tag="U1404_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5347394.1"
                     /translation="MSDFIVEHLTKSVGDKTVFADLSFIIHQGDRIGIIGVNGTGKTT
                     LLDVLSGRIGFDGDVSPFRTKNAYKIAYLTQEPDFDESKTVLDTVLSSDLRETQLIRE
                     YELLLSHYDEASQARLEKVMAEMDSLNAWEIESQVKTVLSKLGLTDLNKTVVELSGGL
                     RRRVQLAQVLLGNADLLLLDEPTNHLDIDTIEWLTTFLKNTKKSVLFITHDRYFLDNV
                     ATRIFELDRASLTEYQGNYQDYVRLKAEQDERDAALRHKKEQLYKQELAWMRRQPQAR
                     ATKQQARINRFHDLKGDLANKIDDSELEINFETSRIGKKVINFENVSFSYPDKPILAD
                     FNLLIQNKDRIGIVGDNGKGKSTLLNLIAGDLQADSGKVDIGETIRIGYFSQTIKGLD
                     ESKRVINFLQEVAEEAKTTSGMVSIAELLEQFLFPRNTHGTLIEKLSGGEKKRLYLLK
                     ILLQRPNVLLLDEPTNDLDIATLTVLEHFLQSFTGPVITVSHDRYFLDKVANKILAFE
                     DSGIETFFGNYTDYLDEKAFLASSSAISLEKPKEKTEKIKENKKRMSYFEKQEWATIE
                     EDIAGLEERIAAIEAEMLTCGSDFTKLSDLQKELDEKNDLLLEKYERYEYLSELEG"
     gene            complement(10469..11680)
                     /locus_tag="U1404_000412"
     CDS             complement(10469..11680)
                     /locus_tag="U1404_000412"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEM5347395.1"
                     /translation="MKLNNLPSEFQEALPILEKIKAAGYEAYFVGGSVRDAILGRPIH
                     DVDIATSSYPQETKQIFSRTIDVGIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQ
                     VSFVRSLEEDLKRRDFTVNAFALDEEAQIIDLFEGMTDLENRTLRAVGIPAERFNEDA
                     LRIMRGFRFAATLDFEIEPTTFEAMVKTAPLLEKISVERSFIEFDKLLMADFWRKGLR
                     AMIDSKAYNFLPDLAGKSDELETMLTSLTEEFRFSTSEQAWAMLFVCLGIDSIKSFLK
                     KWKTSNDFQRSVVKLVEIYQLRQAGPVTKQICFKYGKEFLYLVEELRQAQGLVTDFVA
                     IDKIDQALTIHDKHEIVVNGGHLMKAFDLKPGPVLGELLKEVEFQIVEGQLENEEQAI
                     MTFVKGILENE"
     gene            complement(11677..12444)
                     /locus_tag="U1404_000413"
     CDS             complement(11677..12444)
                     /locus_tag="U1404_000413"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002262893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEM5347396.1"
                     /translation="MTIKVIIAGFKGKMGSTAVEMVKGDAALSLAALVDPFATETEVD
                     GVPVFKTKEEVASLEADVWVDFTTPKFAYENTRFALENGFAPVVGTTGFTPEEIEELT
                     ALSAEKGLGGLIAPNFAIGAILLMQFAAQAAKYFPNLEIIELHHDKKKDAPSGTAVKT
                     AELISQVRQSQTQGAADEEELIAGARGAAFDGFRIHSVRLPGLVAHQEVIFGAQGEGL
                     TIRHDSYDRISFMGGVNLGIKEVVKRSQLVYGLEHLL"
     gene            complement(12453..13304)
                     /locus_tag="U1404_000414"
     CDS             complement(12453..13304)
                     /locus_tag="U1404_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5347397.1"
                     /translation="MKLAVITDSSAILNVQSIERDDLFVLSIPVSIDGENYIEGQNLT
                     VEEFYQKMASSKELPKTSQPSLMELEEILAKLTEKGYTHALGLFLSSGISGFYQNIQY
                     LADEFEGLTVAFPDTKITSAPLGMMVENVLKWADAGLSFEEITGKLDQEIGKTTAFIM
                     VDDLNHLVKGGRLSNGAALLGNLLSIKPILYFTGEGKIEVYEKVRTEKKAIKRLLEIL
                     QEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIVSFGSVIGTHLGEGAVAF
                     GISPIIE"
     gene            complement(13306..13680)
                     /locus_tag="U1404_000415"
     CDS             complement(13306..13680)
                     /locus_tag="U1404_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HEM5347398.1"
                     /translation="MEIIRDKEFVNQYHFDARNHAWEKENGIPETKLKVDFQLIEQNR
                     AENRTSMITILRFMIVLDHFVISGAMSQAVHLPNRLVEEPTEFTDEEKRVLVEPLLDI
                     LKRMTYEVTEIAFDAPGVNLEF"
     gene            complement(13776..15731)
                     /locus_tag="U1404_000416"
     CDS             complement(13776..15731)
                     /locus_tag="U1404_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5347399.1"
                     /translation="MKIQDVLRKDVMLLDLQATSKEAVIDEMIASLVDKGYVTDFDVF
                     KTGIMNREAQTTTGLGDGIAMPHAKNAAVKEATVLFAKSNNGVDYASLDGQPTDLFFM
                     IAAPEGANDTHLAALAELSKYLMKAGFADRLRAATNPEEVIAVFDTAEAADKAVEEVV
                     AAPSGDRPFIVAVTACTTGIAHTYMAEEALKKQAAEMGVGIKVETNGASGVGNKLTAE
                     DIKNAAGVIIAADKAVDMPRFNGKPLVSRPVAAGIKQPEELINIILNGKAAAYTASEG
                     AATVESSEKLSLGKAFYKHLMSGVSQMLPFVIGGGILIALAFLFDGALGVPQDSLGSL
                     GSYHEIAAMFMKIGGAAFGFMLPLLAGYIAYSIAEKPGLVAGFVAGAIASSGLAFGKI
                     PYAAGGEETLALAGVSSGFLGALVGGFLAGGVVLVLRNALRNLPKSLQGLNAILLLPL
                     LGTAITGFLMFFVNIPMAAINTGMNNFLAGLEGSSAILLGLVLGGMMAVDMGGPVNKA
                     AYVFGTGTLAATVADGGSVAMAAVMAGGMVPPLAVFVATLLFKDKFTQEERNSGLTNI
                     VMGLSFITEGAIPFGAADPARAIPSFIAGSALAGALVGLSGIQLMAPHGGIFVIALTS
                     NPLLYIAYVLIGAVVSGVLYGALRKAK"
     gene            complement(15728..16639)
                     /gene="pfkB"
                     /locus_tag="U1404_000417"
     CDS             complement(15728..16639)
                     /gene="pfkB"
                     /locus_tag="U1404_000417"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HEM5347400.1"
                     /translation="MIYTVTLNPAIDYIVRLEHVETGSVNRMESDDKYAGGKGINVSR
                     VLKRLGYPNTATGFLGGFTGQFIKDGLIAEGIDTDFVQVDQDTRINVKIKADQETEIN
                     GLGPIVTDTQLAELEMVLAGLTKEDTVVFAGSAPASLGNEVYNRLIPVAKKAGAQVVC
                     DFEGQTLLDSLAHQPLLVKPNNHELEAIFNVELNDIADIETYAKKILEMGAQNVIISM
                     AGDGALLVTPAATYFAKPIKGTVKNSVGAGDSMVAGFTGEYVRSQDPIEALKWGVACG
                     TATAFSDDLASIEFIKETYEKVEVETL"
     gene            complement(16636..17385)
                     /locus_tag="U1404_000418"
     CDS             complement(16636..17385)
                     /locus_tag="U1404_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5347401.1"
                     /translation="MNILKSERKQIILERIHSQQFVRLEELIEVLDTSESTVRRDLDE
                     LENEGKLRRVHGGAEAPRNLQLEESILEKSVKNVQEKREIAERAAQQIVNGDVIFLDA
                     GTTTGVLIDYLQQENLTVVTNSIHHAVRLVERKIKTIIIGGFVKQSTDASVGAVALEQ
                     IRQLNFDKAFLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVK
                     VAAIEKSNIICQSSESSLLDIIKEKTRVIEV"
     gene            complement(17489..18544)
                     /locus_tag="U1404_000419"
     CDS             complement(17489..18544)
                     /locus_tag="U1404_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEM5347402.1"
                     /translation="MKRKVFEHYQPYKIKQKARFDLGNNENRIIDWSFLPQETLENLD
                     VNQLSFYGDNTYSELIEKYAAYLGVNPKQVTVGVGSDHLIHMIVSTFMEKDDTFLTVN
                     PDFFMYETYNHMHGSRFETIDLEAKNDTLVLPVEKLLARAEEVKAKIIMLSNPNNPSS
                     VAYSLEDLEKLAISFKGLLVVDEAYVEFANVESFISRLQQFDNVLVLRTLSKAFGLAG
                     LRVGFAVGSEELIYELDKVIPPFSLSNLTAKMAAVALNYTDKVLETVGVIQNLREEMI
                     LFLQGLDNCQVLPSQASFVTFKAPWAEEFYQQALAQDWNFKYYPTGKLEGHIRLSIGR
                     PEEMDMMKKMIEKLVEA"
     gene            complement(18575..19300)
                     /gene="trmD"
                     /locus_tag="U1404_000420"
     CDS             complement(18575..19300)
                     /gene="trmD"
                     /locus_tag="U1404_000420"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEM5347403.1"
                     /translation="MRIDILTLFPEMFAPLEHSIVGKARDKGLLEINYHNFREKAEKA
                     RHVDDEPYGGGQGMLLRAQPIFDTMDSIEQAKPRVILLDPAGRTFNQAYAEELAQEEQ
                     LIFICGHYEGYDERIKTLVTDEISLGDYVLTGGELAAMTMIDATVRLIPEVIGKEVSH
                     TDDSFSSGLLEYPQYTRPYEYRGMVVPDVLMSGHHENIRKWRLEESLRKTYQRRPDLL
                     ENYNFTAEELTIFEKIKAEDTVD"
     gene            complement(19290..19808)
                     /gene="rimM"
                     /locus_tag="U1404_000421"
     CDS             complement(19290..19808)
                     /gene="rimM"
                     /locus_tag="U1404_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEM5347404.1"
                     /translation="MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFDDK
                     DQFVMEVEIANHRKAKNFDIIKFKGMYHINDIEKYKGFSLKIAEENLTDLEDGEFYYH
                     EIIGLDVYENDILIGQIKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRV
                     DVELLEGLDDEN"
     gene            complement(19906..21255)
                     /locus_tag="U1404_000422"
     CDS             complement(19906..21255)
                     /locus_tag="U1404_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5347405.1"
                     /translation="MYQTRNNKEKLWLFIKIFLPILIYQFANYSASFIDTMMTGQYST
                     MDLAGVSMATSLWNPLFSFLTGIVSALVPIIAQYLGKGERDKIREEFHQFVYLAIGLT
                     ILLLCSVLFIAVPALAQFGLDESIFQVGRQYLYFISIGILPLLLFSVCRSFFDALGLT
                     QLSMYLMLLLVPFNSLFNYLLIYGKMGLPALGGAGAGLGTALAYWAVLLVIVIVMCKN
                     KTIASYQIWQWSPIDLSLLKEGLKIGLPIGLQVFAEVAIFAVVGLYMAKFSAQIIAAH
                     QSAMNFATLLYAFPASVSSALAIVIAYEVGAKRPQDVKAYSRLGRLVALGFAVLTLTF
                     LYFFRSKVAYLYGNDAEFIRLTSHFLSFALMFQLADAFTAPIQGILRGYKDTTVPFIL
                     GLVAYWSMTFPVAFLLERFFQMGPEAYWIGLISGIFVCGIALNLRLIIIAHSHLSVK"
     gene            complement(21325..22308)
                     /gene="guaC"
                     /locus_tag="U1404_000423"
     CDS             complement(21325..22308)
                     /gene="guaC"
                     /locus_tag="U1404_000423"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017769630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HEM5347406.1"
                     /translation="MFNETPVFDYEDIQLIPNKCIINSRSEADTTVTLGKYSFKLPVV
                     PANMQTIIDEDVAEMLAKDGYFYIMHRFDEAGRIPFIKRMHEQGLIASISVGVKEYEY
                     EFVTSLKADAPEFITIDIAHGHAESVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN
                     AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA
                     KSIRFGASMVMIGSLFAGHIESPGKTIEVDGEKFKEYYGSASEYQKGAYKNVEGKKIL
                     LPAKGHLKDTLVEMEQDLQSSISYAGGRDITSLKHVDYVIVKNSIWNGDSI"
BASE COUNT         6538 a         5084 c         4270 g         6531 t
ORIGIN      
        1 ataaatatat tttgcaatat cttatgaaaa tatccttgga gaatcataaa aactatggta
       61 caataaacga aaaataaagg aggaaatata tgccatttgt acgtattgat ttgtttgaag
      121 gacgcacaga agaacaaaag attgccttag cacgtgaagt taccgaagtt gtatctcgta
      181 atactaatgc gcccaaagaa gccattcatg tcttcatcaa tgatatgcct gaagggacct
      241 actacccaca aggtgaaatg aaacgaaaat aagagaaaac actcttgcaa gaaaatgcag
      301 gagtgtttct ttgtatcaag tttatttctt atcgtcttca tccatgctga gaacactgag
      361 gaaggcttct tgtggaactt cgacagagcc gatggctttc atccgttttt taccagcttt
      421 ttgcttttct aggagtttgc gtttacggga aacgtcacca ccataacact tggccaaaac
      481 gttcttccga agagccttga tgtcgctacg ggcaacaatt ttctgaccga tagctgcttg
      541 gattggtact tcaaactgtt gacgaggaat gatttttttg agtttgtcca cgataatttt
      601 cccacgttcg taggcaaatt ccttgtggac gataaagctg agggcatcga ccttatcacc
      661 attgaggaga atatccattt tcaccaactt ggatgaacgg tattcagaaa tctcatagtc
      721 gaagctggca taaccacgag tggacgactt aagcttgtca aaaaagtcaa aaacaatctc
      781 agccagtgga atttgataaa taacattgac acgattatca tcgatgtaat ccatagtcac
      841 aaagtcaccg cgtttgcgtt gggccaattc catgactgca ccgacgtatt cctgtggtac
      901 catgatttgt gccttaacgt aaggctcttc gatagtggca atcttggttg ggtctgggaa
      961 ttcggatggg ttggctacat caatcatttc accgtccgtc atgttgacat ggtagacaac
     1021 cgacggtgct gtcatgatga ggtcaatgtt aaactcacgc tcaatccgtt cttggataac
     1081 atccatgtgc aagaggccca agaatccaca acggaaacca aatccgagtg cctgcgatgt
     1141 ttctggctca aactgtaagc tggcatcgtt gagttggagt ttttccaagg cttcacggag
     1201 gtcattgtac ttgttggaat cgattggata gatacctgca aagaccattg gattcatctg
     1261 cttgtagccc gctagtggct cgctagcagg attttttgcc aaagttaccg tatcaccgac
     1321 acgggtgtcg gcaaccgtct tgatagaggc tgcaatgtaa cctacatcac cagtcgccaa
     1381 ataatcacga ccgattgctt tgggtgtgaa gatacccact tccgtcacat caaaggtttt
     1441 gccattgctc atcatctgaa tagtatcgcc aggttttacc acaccgttga caatacgaac
     1501 ttggaggata acgcctcgat acggatcgta aaccgagtca aaaatcaagg cttgcaatgg
     1561 agcttcgaca tcaccagtcg gtgctggaac cttctccacg atctgctcca agatttcctc
     1621 gataccaata cctgccttgg ctgatgttgg cactgcttcg gaagcatcca aaccaatcac
     1681 atcttcgatt tcctgacgaa cacgttctgg gtctgctgct ggtaggtcaa tcttgttaat
     1741 gattggcaag atttccaaat cattgtccaa ggctagataa acgttagcca aggtctgtgc
     1801 ttcaatccct tgagcagcat ccaccactaa aatcgctcct tcacaggcag ccaacgaacg
     1861 cgatacctca taggtaaaat ccacgtgtcc tggtgtgtca atcaagtgga aaatgtatgt
     1921 ctctccatct ttagctgtat agttgagttc gattgcgttg agtttaattg tgataccacg
     1981 ctcgcgttcc aagtccatac tatctagcaa ctgggcttgc atttcacggc tggaaactgt
     2041 ttctgtcttc tcaagaatac ggtcagccaa ggttgattta ccatggtcga tgtgggcaat
     2101 aatggagaaa ttacgaattt tctcctgtcg ttttttcaaa tcttctaaat tcatgtttct
     2161 tcctctacaa ggctattact cctcattata tcagatttag tgataatttt ccataagaaa
     2221 aacacctaga aaactaggtg tctgctctgc tattttccca gccaaagacc gatctctcgt
     2281 tcggctgctt ctgcactatc tgagccatga acgacatttg ccacaattcc ctcaacgggc
     2341 gctgtcgcaa aatctccacg aatagtccca ggtagggcgt ttactggatt ggtagctccc
     2401 atcatatctc gccaagattt gataacttct ggcccttcta taatgccagc tatcatcggc
     2461 ccgctcgtca tatattgtac taattgcggg aagaaaggtt tatctgtcaa atgatcataa
     2521 tgttgactga ttagctcttc tgtcgctgta accattttta aatctcggat ttgaaatccc
     2581 ctgcgttcga tacgtgaaag aatttgtcct gcaagtccac gcttaagagc atctggtttg
     2641 atgatgaaga aagtacgttc catgattttt ctcttgaact gtttattaga tgttacttaa
     2701 gatagcatcc catgcctgat cgtatccgtg acgagtctca gaagaaaaga taacgaattg
     2761 atcattttta tcaaaatcca atttcttttt aatcatcgat tcgtgcttat tccactttcc
     2821 ttgtgggatt ttatcagcct tcgttgccac aataataaca ggaatttcat aatatttcaa
     2881 gaaatcatac atttgaacat catctgctga tggctcatga cgcatgtcta ctaaactcac
     2941 cacaacacgt agattttctc gtgtcgtcaa atactcttca atcattttgc cccacttagc
     3001 gcgctccgtt ttggatactt tagcatagcc ataacctgga acatctacaa atcgaatttt
     3061 atcatctata ttataaaaat tgagttgttg agtctttcct ggttttcctg acgtacgtgc
     3121 aagatttttt cttcctagaa gagtattgat aaatgaggac tttccaacgt tagatcgccc
     3181 ggcaagggca atttctggaa tgtcatcgcc cggatactgg gcttttgaaa cagcactgag
     3241 caaaatctca gcattatgtg tgttgatttc cattttatac ctttcataaa taagggtaga
     3301 aaacaatcag tttccaccct ttattttttt atgcagtttc tagtaaaggc ttttccttac
     3361 cgtctactgc tgctttggtt acacgaacgc gtttaacgtt atcttgacct ggcacctcaa
     3421 acatgacatc caacatcgtt tcttcaatga tggagcgaag tccacgagca ccagttttac
     3481 gttcaattgc tttttctgca attgctaaca aggcgtcctc atcaaagtca agctccacgt
     3541 catcataaga caagagtgtc tggtattgtt ttacaagagc attcttcggt tccgtcaaaa
     3601 tgcgtaccaa atcctctgtt gtcaattggt ccaaagctgc gaatacaggc aagcgaccaa
     3661 tcaactctgg aatgataccg aatttttgaa tatcgtctgc aatgatatgt tgcatgtatg
     3721 attctttttc atcaatagca cgattattat gaccaaaacc gatgattttt tcaccgagac
     3781 gctgcttgac gatttcttcg ataccatcaa atgcaccgcc aacgataaac aggatatttt
     3841 tggtgtccac gtgaatcatt tcttggtttg gatgtttgcg tccaccttgt ggtggtacgc
     3901 tggccacagt tccctcgata atttttagga gagcttgctg gacaccttca ccagatacat
     3961 cgcgggtaat ggacacattt tcaccttttt tggcaatttt atcaatttca tccacataga
     4021 taattcctct ttctgcacgg tcaatgttaa agtctgcagc ctgcaaaagt ttgaggagga
     4081 tattttctac gtcttcacca acataacccg cctcagtaag agcggtcgca tcggcaatag
     4141 caaacgggac attcaaactt ttagccaagg tctgagctag gaaggttttt cctgaaccag
     4201 tcgggccaat cataaggata tttgattttt gcaaatcaac atcgttctca tcacggctat
     4261 cttggaaatt gatacgtttg tagtggttgt aaacggctac tgctaaagca cgttttgcac
     4321 gatcctgtcc gatgacgtag ttgttcagaa tattgagtaa ttcttgtggc tttggcgtat
     4381 cggccaagtc tgtcaaaact tcttctgcca gttcctcacg aatgatttcc tgtgctagtt
     4441 ccacgcactc attacaaatg aagacattgt ttcctgcgat aattttttta acttcttctt
     4501 gattttttcc gcaaaatgag caatagatta gctcatgtgt atgcttaaca gccatgtgtt
     4561 tcctctttca tatctcttat ctaaataaaa atccataaat ggcgtgaata ctattgacca
     4621 gattggtaaa agcattcagt aaaaataaaa ttgctaaacc aaaacgtttc ttccgaaagg
     4681 cttgaatcgc acaaagaaca caaatcccac agagaaatgc tgtaaataaa ccgaataaac
     4741 ttctctccat gcctaaccat ctcttctttc ataggttttt attgtaaaat catacgggtt
     4801 tttctcgtct tttggacgta aattggcgct ttgtagctga aatttctcca taggaaatgc
     4861 tttcggaaaa tacacatcgc cattaaattg accgtgaata tctgtcacta ttaatgtttc
     4921 aatgtaaggt gcaaaagcag taaaaatttg tcccccacca atcacaaata gtgtctgctc
     4981 ctgtttgtta taccaatcta gaacatcttc cacactgtgt aaaatggtaa tacgttcact
     5041 ctctagttga taggttttat ccgttgtcaa aacgatggtg tgacgattgg gaagagcacg
     5101 tttacccatg ccgtcgaaag ttatacgtcc catcaccatc gtgtgaccta ttgtcgtttc
     5161 tttgaaatga gctaagtcag ctggcaatga ccaaggaagt ctatcacctt ttccaatcaa
     5221 tccattttca tcttgagccc aaatggcaac aatcttttta gtcattttct ctcactttcc
     5281 gtcctatcat tctatcaaaa aaacatgaaa aatgcactta ccaagtaggc caagcgcaaa
     5341 tttttatcat gttgaaacta tcaccaactc ctcagagata gggaggagtc cgagattcgt
     5401 agaatgtgaa cctcgctggt gctggaaagt ccccctcatc ttaaatcgct aagtcaaaat
     5461 taagttgcgg tttaactggc ttcgaaagtc tgagtataga ctgttgaagg ttggaagtga
     5521 aacagttcgg ggaactgttt cagcccgagc ctaaaaataa agaagcgagg taaaagaacg
     5581 aagttcttca ctgctaatcc agttaaattg ctaaatcgaa ttttaactgc ggtttaactg
     5641 gattgtagtc caccaactca aaatcttctg cccgaatgtc aaagaaattg gtgccgtcag
     5701 gaacatttaa gaccaaacgt ggctcaactt cagatggtgt gcgacggagt aattcttcag
     5761 cctgttcaaa ctgattatca tagatgtgaa gattgttgat gaaatagaaa aacttcccaa
     5821 ccttccagcc aaaatgttta gcaatcatca tctgaagggc tacatactgc atagcgttga
     5881 tatgatgggc taccaacata tcatttgacc gttgagttag agttgcatcc aaataaatct
     5941 ccccatccac tcgccgaacg tcaaacatgg tctgaaaggc acatggcaaa agacccgcgg
     6001 attggtcaaa tgcttcataa tcccacaaag aaatcacatt acggcggttc catggatttt
     6061 cctccaattg cttgaggatt tttgaaatga tgtcatgctt tttaacaatt gcaccatagc
     6121 gttcaccgat tgtgcctgtt ccttcaactt cccagtcatt ccaatactgg acaccgtatt
     6181 tttcctgtaa aaccgacaaa tcattggtct ggtcttggta aatccagaga atttccttga
     6241 tggctgattt aatcggaata ggtctaagtg ttgtaatagg aaactccccc ttagacaagt
     6301 catactcagc aaaggcgcct gtaacgtact tggaattagc gacatttcca tccttgtaac
     6361 gtgggcgagc attttctgaa aaaacgccct cttccataat cttacgaatg ttttctttaa
     6421 aaataatatc tgctttagtc atggtcttag tatagcaaat tctagcaaaa aactccagtt
     6481 ttgtaccgga gttctcattt gaaaaagaat gaataaaaat taaggtggaa caaaccagat
     6541 agggcagtta ttaggctgaa cagtataaaa tacaaggcaa ccaaaatagc actcaacaat
     6601 atctgacgaa catttttagt ataaatagcc gttggtaagc tggctattta tactaaaaat
     6661 ggaatgatga aaaatgttag tttaaaattc acatttacaa tatcaaacca ttgccctatt
     6721 ggcaaaaata gcatgacgaa gagaaaaatt gcgataccat acaaaactag atttaatctt
     6781 tttagtaaag tcaggttcat aaccgctcct tctaggggcc aaatataaag tagccaatac
     6841 cgaatatcag aggaaatgag atcattaaga agatactaat caaaccagtc cacaattttt
     6901 tataatagat agatagtata agaattagag tccccagtag agggagaatc aacatggttg
     6961 ctacgtttcc ccagctagac gggaaaaacc agtcacgaat ccagttatca aggaaaaaag
     7021 cagataacaa aatcaataaa ccaagaatgg tcagatagtt gattatttta gacatgttca
     7081 cctgtttcat aaggtgacac tcctttctct ttacactttc attgtacgct taaatactac
     7141 atttttcaat atatgtatat aaagaaaatg tgacagcgga attgaaaaaa agcagagttt
     7201 cccctgcttt taacgattat ttcaagacaa gtgatgctgc gcccaataca cctgcatcat
     7261 taccacgtgt tgccaagaca atttgcgtgc tttccttgat ttgtgggaag ctattttcag
     7321 caaagacttt acgaacacca tccaataaga gctctcctgc agctgataca ccgccaccca
     7381 gaacgatgta ggcaggattg aggactgcag caatgtttgc acaagcaaca cctaggtatt
     7441 ctgagaagtg acggtagaca atcaaagcca aatcatcgcc ttcttttgcc aaatcaaaga
     7501 catctttagc cgttacatct tgcccatcat caatcatttg tttcagtttt gcatcgcctg
     7561 cgtattggtc cgcataacga cggctaaggt tgacaatacc tgtcgctgaa gccacggttt
     7621 ccaagcaacc tttcttacca caagtacatg caaatggctc atcaaagtca actgtgatat
     7681 ggcccaattc accaccagcg cctttgaccc cacgaatcaa gtttccagca gcgatgacac
     7741 cgccaccgac acctgtacca agcgtcataa agacaacgtt tggattgttg tttccagcac
     7801 caacccactg ctcaccgaga gccgctacgt ttgcatcatt gtcgatgaaa aatggtaaac
     7861 cgagcgcaga ttcaaactga tctttaacca attgcaaggt cttccagttg aggttatagg
     7921 ctccgataac agtgccagct tcactatcca ctacaccggg tgagcccata ccaattccta
     7981 agaaattgtc ctttgtcaaa ccatgggttt caaaacgatg ttgaatgctg tcaataatat
     8041 ctggaacaat atggcttcca tcgtctaata tatttgtctt gatagaccat ttttcttgaa
     8101 tttctccctc agtagtcaaa atggccaatt taacagaagt tcccccaagg tcaataccga
     8161 taattttttt agacataatc atcacctcaa atgtattttc tttattataa cacaatgcaa
     8221 aggtttgcgt aaagcctttg caaaaatttg tacggataaa aattaattgc tctatcgaaa
     8281 gagatagagc aaaattaaaa attgaatatg taagataaac cttccaatgg aaaagagcat
     8341 aactgtcgta aaattactac cttctttcgt tccattatag agaaaaagag tagaaataaa
     8401 ggtaaatcct agagcaaacc ccaccatctg caagtcgtga taagactgac tataaaaata
     8461 caaggtgctt gtcagcaata tcatggatag gatagttaaa atcaagcgca atgtattcat
     8521 ttttttggtc tttagatagc taaacaaagc cgctcccaag gtcaccaaga gatagatgac
     8581 catatatgac atgacaagaa ctttcatcta gccctccagt tcgctcagat actcataccg
     8641 ctcatatttt tccaagagca gatcgttttt ctcatccaat tccttctgca aatcggataa
     8701 ttttgtaaaa tcactaccac aggtcagcat ttccgcctcg attgccgcaa tccgctcctc
     8761 caagccagca atatcctctt cgatggttgc ccattcctgc ttctcaaagt aggacatccg
     8821 cttcttgttc tctttgattt tctcggtttt ctcctttggt ttttccaaag aaatggcaga
     8881 gctggaagcc agaaaggcct tctcatccag atagtctgtg tagttaccaa agaaggtctc
     8941 tataccgcta tcttcgaaag ccaagatttt attggctacc ttgtctagga aataacggtc
     9001 gtgactaacg gtaatgactg gaccagtaaa gctttgcaag aaatgttcca agactgtcag
     9061 agtcgctatg tccaagtcgt tggtcggctc atctagtaag agaacattgg gccgttgcaa
     9121 gagaatcttc agcaaataaa gtcgcttctt ctccccacca gacaatttct caatcagggt
     9181 accatgggta ttacgtggga agaggaattg ctctaagagt tcggcaattg aaaccatacc
     9241 agaagtcgtc ttagcttctt ctgccacttc ctgcaagaaa ttgatgaccc gcttgctttc
     9301 gtccaagccc ttgatggtct gagaaaaata accgatacgg atggtttcac caatatctac
     9361 cttaccgctg tctgcctgca aatcacctgc gataagattg agtaaggtag attttccttt
     9421 tccattatca ccgacaattc ctatgcggtc cttgttttga atgagcaggt taaagtctgc
     9481 taaaatgggc ttatcaggat aggaaaagct gacattttca aagttaatga cttttttacc
     9541 gatacgagag gtttcaaaat tgatttccaa ttcgctatcg tctatcttgt tggctaaatc
     9601 gcctttaagg tcatggaaac gattgatacg ggcctgttgc ttggtagcac gagcttgagg
     9661 ttgtctgcgc atccaagcca actcttgttt gtagagctgc tctttcttat ggcgaagggc
     9721 ggcatctcgc tcgtcctgtt ctgcctttaa gcgaacatag tcctggtaat ttccctgata
     9781 ttcggttaag cttgcgcgat ccaattcaaa aatccgtgtc gccacattgt ccaagaaata
     9841 gcgatcgtgg gtaataaaga gaacagactt tttagtattt ttcaagaaag tcgtcaacca
     9901 ctcaatggta tcaatgtcca ggtggttagt cggttcatcc agcaagagca agtcagcatt
     9961 gccaaggagg acttgggcca attgcactcg tctacgtaga ccacctgata actcaacaac
    10021 ggttttgttg aggtctgtca gaccgagttt tgacagaaca gtcttgacct gactttcaat
    10081 ctcccaagca ttgagagaat ccatctctgc catgactttc tccagtcttg cttgacttgc
    10141 ttcatcgtaa tgagataaga gcaactcgta ttcacgaatc agctgggttt cgcgtaggtc
    10201 agatgaaaga acggtgtcta aaactgtctt actttcatca aaatcaggtt cctgggtcag
    10261 ataggcgatt ttataggcat tttttgtacg aaaaggtgat acatctccgt caaaaccgat
    10321 acgacctgac aggacatcca acaaagtcgt ctttcctgta ccattgaccc caataatccc
    10381 gattctgtcg ccttgatgga tgatgaaaga cagatcagca aagaccgttt tatctccgac
    10441 agatttagtc aggtgttcaa cgataaaatc actcattctc taagattcct ttcacaaatg
    10501 tcataatcgc ttgctcttcg ttttccagct gtccttccac aatctggaat tccacctctt
    10561 tgagtagttc tcccaatact ggacctggtt tgaggtcaaa tgccttcatc agatgtcctc
    10621 cattgacaac aatttcatgc ttgtcgtgga tagtcaaggc ttggtcaatc ttatcgattg
    10681 ctacaaaatc tgtgacaaga ccttgtgcct gacgaagttc ctctaccaag tataagaatt
    10741 ctttgccata cttgaaacag atttgtttag tgacaggtcc tgcttggcgg agctgataaa
    10801 tctctactaa tttgaccacg ctacgttgga aatcattgct ggttttccat tttttcagga
    10861 aggatttgat gctatcaata cctaggcaga caaagagcat ggcccaagct tgttcagatg
    10921 tcgaaaagcg aaactcttct gtcagacttg ttagcatggt ctctaattca tcactttttc
    10981 cagctaaatc aggcaagaaa ttgtaagcct tggaatcaat catagcgcgc aagccttttc
    11041 gccaaaaatc cgccatcaag agtttatcaa actcgataaa gctacgttcc accgagattt
    11101 tttctaaaag cggtgcagtt ttaaccatgg cttcaaaggt agtcggctca atttcaaagt
    11161 ccaaggtcgc tgcaaagcga aatccacgca tgatacggag agcatcttcg ttgaaacgct
    11221 cagccgggat gcctacagcc cgtagggtgc ggttttccaa gtcagtcatc ccttcaaaaa
    11281 ggtcaatgat ttgagcctct tcatcaaggg caaaggcatt aactgtgaag tcgcgacgtt
    11341 tgagatcctc ttctaaggaa cgcacaaaag aaacctgact cggcctacgg aagtcgacat
    11401 actcctcttc tgtccgaaag gtggtaattt catactcctt tttcccctct aataccaaca
    11461 ccgtaccgtg ttcaattccg acatcaatag tccgtgaaaa gatttgtttc gtttcctgag
    11521 ggtagctgga tgtcgcaata tcgacatcat gaataggcct accgagaatg gcatcacgaa
    11581 cggaaccgcc aacgaaataa gcctcgtaac cagctgcttt aattttctct aaaatcggca
    11641 aagcctcctg aaactcagaa ggcaggttgt ttaatttcat aataagtgtt ccaaaccata
    11701 aacgagttgt gagcgtttga ctacctcttt aatgccgaga ttgacaccgc ccataaagga
    11761 aatacgatcg taagagtcat gacgaatggt caagccttct ccctgtgccc caaaaatcac
    11821 ttcctgatgg gcaacaaggc ctggcaagcg tactgagtgg atacggaagc catcaaatgc
    11881 tgcaccgcga gcgccagcaa tcagttcttc ttcatccgct gcaccttgag tctgtgactg
    11941 acggacttgt gaaatgagtt cggcagtttt gacagccgta ccactcggtg catccttctt
    12001 cttatcgtgg tgtaattcaa tgatttcaag atttgggaaa tacttggctg cctgtgctgc
    12061 aaattgcatg agcaagatag cgccaatagc aaagttagga gcaatcaagc cgcccaaacc
    12121 cttctcagca gataaggcgg tcaattcctc gatttcttca ggggtaaatc ctgtcgttcc
    12181 aaccacaggt gcgaaaccat tttccaaggc aaaacgggtg ttttcatagg caaattttgg
    12241 cgttgtaaaa tccacccaga catcagcttc taggctggca acttcttctt tggtcttgaa
    12301 aacaggaaca ccatctactt ctgtttctgt cgcaaaggga tccaccaagg cagccaaact
    12361 aagtgctgcg tcacctttga ccatctcaac agccgttgag cccatttttc ctttgaatcc
    12421 tgcgataatt accttaattg tcatgcaaac tcctattcaa taatgggaga aataccaaag
    12481 gccactgccc cttctcccaa gtgcgtaccg atgaccgaac caaatgacac gattggtaaa
    12541 tcgctaccga cacctgcttc ttccaactgc tgtttaaagt tttcagcctt ctgaggtgcg
    12601 ttggcgtgta tgatagcaat ctgatactgt ccttcggtcg tttgttcttg gaggatttcc
    12661 aagaggcgtt taatggcctt tttctccgtc cgaacttttt catacacttc aatcttaccc
    12721 tcgcctgtaa aatacagaat cggtttgatg ctcaaaagat tgccaagcaa ggctgcacca
    12781 ttggacaagc gaccaccttt taccaaatga ttgaggtcat caaccatgat gaaggctgta
    12841 gtcttcccaa tttcttggtc caatttccca gtaatctctt caaaactaag tcctgcatca
    12901 gcccatttga gaacattttc gaccatcatg cctaaaggag ccgatgtaat tttggtatct
    12961 ggaaaggcaa cggttaatcc ttcaaattca tcagccaaat attgaatatt ttgataaaaa
    13021 cctgaaatac ctgatgacaa gaataagcca agtgcgtgtg tatagccttt ctctgttaat
    13081 ttagccagaa tttcttctag ttccatcaaa ctcggttgac ttgttttagg taattctttc
    13141 gatgaagcca ttttttgata aaactcttca accgtcaaat tttgcccttc tatataattt
    13201 tccccatcga tgctgactgg aatacttagg acaaacaggt catcccgctc aatactttga
    13261 acattcaaaa tagccgatga gtcagttata actgctaact tcatattaaa actccaaatt
    13321 cactcctggt gcatcaaagg cgatttcagt aacctcatag gtcattcgtt ttaaaatgtc
    13381 caaaagaggc tctaccaaaa cacgtttttc ctcatcagta aattcagttg gctcttctac
    13441 caatcgattt ggtaagtgaa cggcctgact catggcacct gaaatcacaa aatgatctag
    13501 tacaatcata aagcgcaaaa tggtaatcat cgatgttcga ttttccgcac gattttgctc
    13561 aatcaattga aagtcaactt tcaattttgt ttccggaatt ccgttctctt tttcccacgc
    13621 gtgattgcgg gcatcaaaat gatactgatt gacaaattct ttatcgcgaa tgatttccat
    13681 ttcaagactc ctctaataac aataatactc acattatacc ataatcctcg tgaaatagct
    13741 aaaaaacctt gccagaagca aggtttcaat caaaattatt tagctttacg aagtgctccg
    13801 taaaggacac ctgatacaac cgcaccgatc aaaacatagg cgatgtaaag caatggatta
    13861 gatgtcaaag cgataacgaa gataccaccg tgaggagcca tcaattggat gcctgacaaa
    13921 ccaaccaagg cacctgcaag ggcagaacca gcgataaagc ttgggattgc acgagctggg
    13981 tcagcagcac caaatggaat cgcaccttca gtgatgaatg aaagacccat aacgatgttt
    14041 gtcaaacctg agttacgctc ttcctgtgtg aatttgtctt tgaaaagaag ggttgcaacg
    14101 aatactgcca acggtggaac cataccacct gccattaccg ctgccatggc aacagaacca
    14161 ccatctgcaa cagttgctgc aagtgtacct gtaccgaaga cataagctgc cttgttgact
    14221 ggaccaccca tatcgactgc catcattcca ccgaggacaa gtccaaggag aatagcagag
    14281 ctaccttcaa gacctgcaag gaagttattc atgcctgtgt tgatagctgc cattgggatg
    14341 ttaacgaaga acatcaagaa accagtgatt gctgttccca aaagtggcaa gagcaagata
    14401 gcgttcaaac cttgaagtga ttttggaagg ttgcgcaaag cgttgcgaag aacgagcact
    14461 acaccaccag caaggaaacc accaacaagg gcacccaaga aaccagatga tacacctgca
    14521 agagcaagcg tttcttcacc accagctgcg taaggaattt taccgaacgc aagaccgcta
    14581 ctagcaattg caccagctac gaaacctgca accaaacctg gtttttcagc gattgagtaa
    14641 gcaatgtaac ctgctagaag tggcaacatg aagccgaagg ctgctccacc gatcttcatg
    14701 aacatagctg cgatttcatg gtatgaacca agactaccaa ggctgtcttg tggtacacct
    14761 aaagctccat cgaataggaa ggcaagggca atcaagatac cgccaccgat aacgaatggc
    14821 aacatttgag aaacaccact catcaagtgt ttatagaacg ctttgccaag actgagtttt
    14881 tctgaagatt ccacagtagc tgctccttct gacgctgtgt aggctgctgc tttaccgttt
    14941 aagatgatgt taatcaattc ttctggttgt ttgataccag ctgcaactgg acgagatacc
    15001 aatggtttgc cattgaaacg aggcatgtca acagccttat ctgctgcgat gataacaccc
    15061 gccgcattct tgatgtcttc agcagtcagt ttgttaccaa ccccagacgc accgtttgtt
    15121 tcaaccttga tgccaacacc catctcagca gcctgcttct taagagcttc ttctgccata
    15181 taagtgtgag caataccagt tgtacatgct gtaactgcaa cgataaatgg acggtcgcca
    15241 ctaggagctg caaccacttc ttctactgcc ttgtcagctg cttcagctgt atcgaagact
    15301 gcaatcactt cttcaggatt tgttgccgca cgaagtctat cagcaaatcc agctttcatc
    15361 aagtatttag acaattccgc aagggctgcc aagtgcgtgt cgttggcacc ttctggagct
    15421 gcaatcatga agaacaagtc agttggttga ccatcaagac ttgcataatc aacaccattg
    15481 tttgattttg caaagagaac agtcgcttct tttacagccg cattcttagc gtgtggcatt
    15541 gcgataccgt caccaagtcc tgttgtcgtt tgtgcttcac ggttcatgat acctgttttg
    15601 aaaacatcaa aatccgttac ataaccttta tcaaccaaac tagcaatcat ttcatcaata
    15661 actgcttcct tgcttgtcgc ttgcaaatca agcaacatga catcttttct caaaacgtct
    15721 tgaattttca tagtgtttct acctcaactt tttcataagt ttccttaata aattcgatac
    15781 ttgccaaatc atctgaaaag gctgttgccg taccgcaagc aactccccat tttagggctt
    15841 caattgggtc ttgtgagcga acgtattcgc cagtgaatcc tgccaccatg gaatctccag
    15901 ctccgacaga gtttttcact gtacccttga ttggtttggc aaagtaagta gctgctggag
    15961 tgaccaacaa agccccatcc cctgccatgg aaatgataac attctgagca cccatttcta
    16021 agattttctt agcgtaggtc tcgatatctg caatgtcatt caactcgacg ttgaagattg
    16081 cttcaagttc atggttgttt ggcttgacca agagtggctg gtgtgctagt gagtctagaa
    16141 gtgtttgacc ttcaaagtca cagaccactt gcgctcctgc ttttttagcc acaggaatca
    16201 gcctattata gacttcattt ccaagactag ctggagcaga cccagcaaag acaacggtgt
    16261 cttctttggt caatcctgct aagaccattt ctaattcggc caactgtgta tctgtcacaa
    16321 tcggacccaa accgttgatt tctgtttctt ggtcagcttt gattttcacg ttaatacgtg
    16381 tatcttgatc aacctgaaca aaatcagtat caattccttc ggcaatcaat ccatctttga
    16441 tgaactgacc tgtgaatccc ccaaggaaac ccgttgctgt attaggatag cccaatcgct
    16501 tcaaaacacg gctaacgtta attcccttac cgccggcata cttatcgtcg ctctccatac
    16561 gattgacact gcccgtctcg acatgttcta aacgaacgat atagtcaatc gctggattga
    16621 gcgtaactgt ataaatcata cctcgattac cctcgttttc tcttttatga tgtccaacaa
    16681 actgctttct gaagattggc agataatgtt ggatttttcg attgccgcaa ctttaacaaa
    16741 ggagaattga ccaattttag aagcatctgc caaaacatag ctttctttag cattgtctat
    16801 gatagtgcgt ttgatggtcg cttcttcaat atctggcgtt gtaaaatagt ttttatctat
    16861 accattcatc cccagaaatg ccttatcaaa attgagctgt cgaatttgtt ccaatgccac
    16921 tgctccaacg gaagcatctg ttgattgctt aacaaaacca cctataatga ttgtttttat
    16981 cttgcgttca accagcctca ctgcgtggtg aatagaattg gtaacgactg tcagattttc
    17041 ctgctgaaga taatcaatca gtacaccggt tgttgtacct gcatctaaaa aaattacgtc
    17101 tccgttaaca atttgttgag cagctctttc cgcaatctct cgtttttctt gaacgttttt
    17161 gacagatttt tctagaatag actcttcgag ttgcaaattc cttggggctt cagcaccgcc
    17221 gtgtacacga cgaagcttac cttcgttttc caactcgtcc aaatccctac gtacagtaga
    17281 ctcagatgta tcaagaactt cgattaattc ctctagccga acaaactgtt gagagtgtat
    17341 tcgctccaat ataatctgtt ttcgttctga tttgagtatg ttcaacacct cctgcaatcg
    17401 tttacaaaaa tcattataca cgattttctg ccattgtcaa tcattttcta tcattttctt
    17461 tcaaaaaaac aaaaaaacta gcagaaatct acgcttccac tagtttctca atcatttttt
    17521 tcatcatatc catttcttct ggacgaccaa tagataggcg aatatgcccc tctaatttac
    17581 ctgttggata atatttgaaa ttccaatcct gtgccaaggc ttgctgataa aattcttctg
    17641 cccatggtgc tttaaacgtt acaaaactag cctgactagg tagaacttga cagttatcta
    17701 acccttgcaa gaataaaatc atttcttctc gcaaattctg aattactccc actgtttcta
    17761 aaaccttgtc tgtataattc aatgcaacgg ctgccatttt tgcagtcaag tttgacaagc
    17821 tgaatggggg aatgaccttg tccaattcat aaattaactc ttcgcttcct accgcaaagc
    17881 caactcgtaa acctgcaagt ccaaaagcct ttgataaggt ccgtaaaact aaaacattgt
    17941 caaattgttg cagacgactg atgaagcttt cgacatttgc aaattcaaca taagcctcat
    18001 ctacaacgag tagcccttta aaagaaatag ccaatttctc caaatcttct agtgaataag
    18061 ctactgaaga aggattgtta ggattggaaa gcatgattat ctttgccttc acctcctctg
    18121 cacgcgccaa caatttctct actggcagga cgagcgtatc gttttttgct tccaaatcaa
    18181 tggtttcaaa acggctacca tgcatgtgat tataggtttc atacatgaag aagtctggat
    18241 tgacagtcaa aaaagtatca tccttttcca taaaggtgga aacaatcatg tgaataaggt
    18301 gatcagagcc cacacctact gttacttgtt tgggattcac tccaagatag gccgcatatt
    18361 tctcgatcag ttcggagtaa gtgttatcac cataaaaact taattgattg acatccaaat
    18421 tttccaaggt ctcttgtggt aaaaaggacc aatcaataat gcgattttca ttatttccca
    18481 agtcaaacct agccttttgt ttgattttat aaggttggta atgttcaaat accttgcgtt
    18541 tcatcatttc tccttctagc aagaaaaaca cagtctaatc aactgtgtct tctgccttga
    18601 ttttttcaaa aatagttaac tcttcagctg taaagttgta gttttccaac aagtctggac
    18661 gacgttgata ggttttgcgt agactttctt ccaaacgcca tttacgaata ttttcatggt
    18721 gaccgctcat taatacatct ggaactacca ttccacgata ctcgtatggt cgggtgtatt
    18781 gaggatattc cagtagacca gatgaaaaac tatcatccgt atgactgact tctttgccaa
    18841 taacctctgg aatcagacga acggtagcat caatcatggt catagctgcc aactctccac
    18901 ctgtcagaac atagtctccg agagaaatct catctgttac caaggtctta atccgctcat
    18961 catatccttc atagtgaccg caaatgaaaa tcagctgctc ttcctgtgcc aattcttcgg
    19021 cataggcctg attgaaagta cgcccagcgg gatccaatag gataacacgt ggcttggctt
    19081 gttcaatgct atccatggta tcaaaaattg gctgggcacg gagcaacatg ccttgtcctc
    19141 caccataggg ttcatcgtcc acatggcgag ccttttcagc tttctctcgg aaattgtggt
    19201 agttgatttc tagcaagccc ttgtcacgcg ccttacccac aatagagtgt tctagaggtg
    19261 caaacatctc agggaagagg gtcaaaatat caattctcat cgtctaggcc ctcgagcaat
    19321 tccacatcga cacggttatt tggaatatca atgttcaaga caacaggtgg aatatatggc
    19381 aagagcaggt ctttcttacc ttttcgtttc accacccaga catcattggc acctggctgc
    19441 aagatttcct tgatttgtcc gatcagaata tcattctcat agacatccaa gccgataatt
    19501 tcatggtaat aaaactcacc atcttcaagg tcagtcaagt tttcctcggc aattttcaaa
    19561 ctaaagccct tgtacttttc aatatcgttg atatggtaca tgcccttaaa cttgataata
    19621 tcaaagttct tagccttacg gtgattagca atttccactt ccatgacaaa ctgatccttg
    19681 tcatcaaaaa gtgcaagctt tgcccctttt ttaaaacgtt cttctgcaaa atcggtcaca
    19741 gacaaaacac gcatttcccc ttgtaggcct tgcgtgttaa caatctttcc tacgttaaaa
    19801 taattcataa tttctccatt tgattttcta tccttttatt ttaacatgag caagatattt
    19861 tcacaagaga gaaaaagccg gatgtctccg actttcatag ttaatttatt tcacggacaa
    19921 atgagaatga gctattatga tcaagcgcaa attaagagct attccgcaga caaaaatccc
    19981 tgaaataaga ccgatccaat aggcttctgg acccatttgg aaaaatcttt caagcaagaa
    20041 tgcgactggg aaggtcatgg accaataagc aaccaaacca agtataaatg gaacagtcgt
    20101 atccttgtaa ccacgtaaaa tcccctgaat aggtgctgta aaggcatctg ctaactggaa
    20161 catgagggca aagctcagga aatgcgaggt caaacggata aattctgcgt cattaccata
    20221 aaggtaggca actttggagc ggaaaaaata taggaaagtg agtgttagga ctgcaaaacc
    20281 aagtgcaacc aagcgtccta gacggctgta ggctttcaca tcctgtggtc gtttagcccc
    20341 tacttcataa gcaatgacaa tagctagggc tgaagaaact gaggcaggaa aggcatataa
    20401 taatgtcgca aagttcatag ctgactggtg ggctgctata atctgtgctg aaaattttgc
    20461 catgtagagc cctactactg caaaaattgc tacttctgca aagacttgta aaccgatggg
    20521 aagaccgatt ttcaaacctt ccttcaataa agaaaggtca atcggactcc actgccaaat
    20581 ctgataagat gcaatagtct tatttttgca catgacaatg acgattacta gcaataccgc
    20641 ccagtaagct aaagcagtac ccaatccagc tccagctccg cccagggccg gtaggcccat
    20701 tttcccataa attaagagat agttaaatag actgttaaat gggacaagga gcaacatgag
    20761 gtacatggat agctgagtca aaccgagagc gtcgaaaaaa gagcgacaga cactaaagag
    20821 caagagaggc aggatgccaa tggaaataaa atagaggtac tgccgaccaa cttgaaaaat
    20881 agattcatca agtccaaact gagccaaggc gggaacagcg ataaatagga ccgagcacaa
    20941 gagtaaaatg gttaatccga tggctagata gacaaactga tgaaattcct cacgaatctt
    21001 atctctttca ccttttccta aatattgagc gatgattggg accaacgcag atacaatccc
    21061 tgttagaaat gaaaaaagcg gattccaaag acttgttgcc atggaaacac ctgccaaatc
    21121 catggtacta tactgaccag tcatcatagt atcaatgaag gaggctgaat aattagcaaa
    21181 ttgataaatt aaaataggca aaaatatttt gataaagagc cagagcttct ctttgttatt
    21241 tcttgtttgg tacatactta ttctctttca attttatata aatattgtaa caagaaaagg
    21301 acctgcattg caagtcctct ttgactagat agagtcacca ttccagatag agtttttcac
    21361 gataacatag tccacatgct tcaagctggt aatgtcacgt cctcctgcat aagaaataga
    21421 tgactgcaaa tcttgctcca tttcaaccag agtatctttc aaatgtcctt tggcagggag
    21481 taagattttc ttaccttcta cgtttttata ggcacctttt tggtattcag atgcagaacc
    21541 gtagtactct ttgaatttct caccgtcaac ttcaattgtt ttacctgggc tttcaatgtg
    21601 accggcaaag agcgaaccaa tcatgaccat gcttgcaccg aagcggatgg atttggcaat
    21661 atctccgtgg gtacggatac ctccgtccgc aataattggt ttacgggcag cttttgcaca
    21721 ccaacgaagg gctgccaact gccaaccacc tgtaccaaaa ccagtcttaa cctttgtaat
    21781 acatacttta cctggaccaa taccaacttt tgtcgcatct gcaccagcat tttctagttc
    21841 acgaactgct tctggagtac cgacattacc tgcaatgacg aacgtctcag gcagttcttt
    21901 cttgatatgt tggatcatct tgataacact ttctgcatgg ccatgagcaa tatcaatggt
    21961 gataaactca ggggcatcag ctttcaagct agtcacaaac tcatattcat attcttttac
    22021 gccaacagag atagaagcaa tcaaaccttg ctcgtgcatg cgtttgataa atggaatacg
    22081 accagcttca tcgaaacgat gcatgatgta gaaataacca tctttggcaa gcatttctgc
    22141 cacatcttca tcaataatag tctgcatatt agctggaaca actggtaatt taaagctata
    22201 tttcccaaga gtcactgttg tatctgcctc tgaacggcta ttgatgatac atttatttgg
    22261 aatgagctga atatcttcgt agtcaaaaac tggagtttcg ttgaacatgc ttctacctct
    22321 ttttcttaac gttggaacag aaaaacggtt tgtttttcgt attttttcct tattacaaga
    22381 tatagtatag cttattgttt gtgttttgtc aataaaaaag aaa
//
LOCUS       DASGCC010000016        22171 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.016, whole genome shotgun sequence.
ACCESSION   DASGCC010000016 DASGCC010000000
VERSION     DASGCC010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22171
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.016"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(235..483)
                     /locus_tag="U1404_000424"
     CDS             complement(235..483)
                     /locus_tag="U1404_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3165 family protein"
                     /protein_id="HEM5347407.1"
                     /translation="MFYLILAIMLVLFYIFIAPRNIKGTMNLIAAVFLLVALAIALVL
                     GFLRIMQFPKEIWVGLLMILIGFWAMRDIYQLNDDTKF"
     gene            complement(501..2348)
                     /gene="typA"
                     /locus_tag="U1404_000425"
     CDS             complement(501..2348)
                     /gene="typA"
                     /locus_tag="U1404_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEM5347408.1"
                     /translation="MTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDERTQLDER
                     AMDSNDIEKERGITILAKNTAVAYNGTRINIMDTPGHADFGGEVERIMKMVDGVVLVV
                     DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPEEVVDEVLELFIELGADDDQ
                     LEFPVVYASAINGTSSLSDNPADQEETMAPIFDTIIEHIPAPVDNSDEPLQFQVSLLD
                     YNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFGFFGLERKEIQEAKAG
                     DLIAVSGMEDIFVGETVTPTDAVEPLPVLRIDEPTLQMTFLVNNSPFAGREGKWVTSR
                     KIEERLLAELQTDVSLRVDPTDSPDKWTVSGRGELHLSILIETMRREGYELQVSRPEV
                     IIKEIDGVKMEPFERVQIDTPEEYQGSVIQSLSERKGDMLDMVATGNGQTRLVFLVPA
                     RGLIGYSTEFLSMTRGYGIMNHTFDQYLPVVQGEIGGRHRGALVSIDQGKATTYSIMR
                     IEERGTIFVNPGTEVYEGMIIGENSRENDLTVNITTAKQMTNVRSATKDQTSVIKTPR
                     ILTLEESLEFLNDDEYMEVTPESIRLRKQILNKAERDKAAKKKKLATEE"
     gene            complement(2481..3473)
                     /locus_tag="U1404_000426"
     CDS             complement(2481..3473)
                     /locus_tag="U1404_000426"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HEM5347409.1"
                     /translation="MKKSFIHQQEEISFVKNTFTQYLKDKLEIVEVQGPILSCVGDGM
                     QDNLSGVENAVTVNVKLIPDATYEVVHSLAKWKRHTLARFGFNEGEGLFVHMKALRPD
                     EDSLDPIHSVYVDQWDWEKVIPDGRRNLAYLKETVEQIYKAIRLTELAVEARYDIESV
                     LPKKITFIHTEDLVKNFPDLTPKERENVVAKEYGAVFLIGIGGELADGKPHDGRAPDY
                     DDWTSPSEAGYKGLNGDILVWNEALGSAFELSSMGIRVDEEALKRQVAITGDEDRLEF
                     DWHRALLNGLFPLSIGGGIGQSRLAMFLLRKKHIGEVQSSVWPQEVRDNFENIL"
     gene            complement(3558..4607)
                     /locus_tag="U1404_000427"
     CDS             complement(3558..4607)
                     /locus_tag="U1404_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM5347410.1"
                     /translation="MSRQIAHLPSLIPFGFILADNRYTYREVFMEGQFEAVVEVDEAG
                     QLSSYVWDCEMEEVYTAHLVTAPAGAFVGQVRESYQSILARVEEACCIALPFTKDQSN
                     RIAQLIKEQWGDLPDYPFAKLPTYGAFRHPNNNKWYALVSQIPRDKLDGSGSKEEVEI
                     VNLKVDGREIAELLSQSGIFPAYHMSKKTWVSVLLDDTVEDQMVFALLEKSRYLVGPK
                     SYKAEQGPDYWVIPANPKVYDIDTEFAENMVVYWPQKSTIQAGDIVAIYVTAPVKAIR
                     YVCRVLGANLENHGESDIPTEKKLMQVELLAQFSDDVLPRARMMDLGVKAVRGPRRLT
                     EGVIEVLTSEVKNLH"
     gene            4682..5074
                     /locus_tag="U1404_000428"
     CDS             4682..5074
                     /locus_tag="U1404_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(deoxy)nucleoside triphosphate
                     pyrophosphohydrolase"
                     /protein_id="HEM5347411.1"
                     /translation="MSKKIISVVAAAIEKDGKIFCAQRPEGKSLGGYWEFPGGKLEAN
                     ETPEEALVREIKEEFDSEIEIVSFINEASYEYDFGIVTMKTYLSKLVTGDLTLLEHQD
                     SKWLPIEDLETLEWAPVDIPAVKCLQQK"
     gene            complement(5098..7971)
                     /locus_tag="U1404_000429"
     CDS             complement(5098..7971)
                     /locus_tag="U1404_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5347412.1"
                     /translation="MSNNNLFQDQLLHSLQYGFIDREIFQEGVYSPKILINDTETHRY
                     VLNDIQEELSKAQSFAFSVAFITQSGLALIKSQLSDLADEGIQGRILISPYLDFNDPI
                     AMKELLKLKNVQVRITPVNLQMHAKFYLFEQKDKQVIISGSSNLTHTALKINYEWNVK
                     LTSTHNGDFIQNAKEEFDRIWEKSIVLDLEAINAYSARRQTVIKTAMIRDESIASYQE
                     TIRPNKMQEQALEGLATVRKNGAQKALVISATGTGKTYLSAFDVKQYNPDRMLFIVHR
                     EQILQKSLKDFQKVLGFEDDEGCIYKSGMDISQKRYIFATIQTISRADNLQAFDPTFF
                     NYILIDEVHKAGADSYKKVMNYFQPDFYLGMTATPERTDGQNIYELFDYNIAYEIRLQ
                     EALDNDMLCPFIYYGVSDIKIDGQLIDEKATFSNLVSEQRVNHILEKIAYYGVSGEAV
                     KGLIFCSSVNEAKELEGQFNARGLRTSALSGEHSQKERQRVVQDLENGNLDYILTVDI
                     FNEGIDIPSVNQVVMLRNTQSSIIFIQQLGRGLRKHDSKEYVTIIDFIGNYQNNYLIP
                     VALFGDQSMNKDNYRREVREPNILKGLTTINFEKVAKEQIFSSITNTTLSSIKILRDA
                     FKDLENKLGRVPYLSDFIKLNSIDPLVFFENSSFQNYGDVINKFSEETILLSEVEKRF
                     LNFITFEILNGKRKHELYLLKLLVENEGLVSSDKWFECIIEHDLDFQTDVLDSVTRVL
                     DLSFLKAQEQKKYGTDALVTFDGELYRLNEEIQESLVNNTKFTQLFLDVIETGILKSK
                     DYPEIFTLGQKYTRREVLKLMNVAKDEPPLNIGGYKIDKDTNSCPIFITYHKSEDISD
                     TIKYDDELLNESTLKWFSKNKRTLDSNDVSTITQSNENGLRLELFVIKDDSEGGEFYY
                     LGPLSYVENSASEVMKNGDSVVQMLFKLDSPVETNLYKYLTDK"
     gene            complement(8056..9318)
                     /locus_tag="U1404_000430"
     CDS             complement(8056..9318)
                     /locus_tag="U1404_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347413.1"
                     /translation="MDNNLVSLNYLIDQLNNLEDFSMSLNGEVPSEISELKSSVFNFS
                     QESALFMENFSQQGWCLYESMDFDIVQRVNSEYEKNGIDKAERILIDYFKNEVRKKVH
                     WIKKSSKVLLDRSHLIDVFFEEHFKGNYICSVPLGLIIVDGAVNDFTKNKDNKCLFAE
                     GLELNVWDSFVGSNKSLKEIVSIFTSSRRKTNKDEIRLPYRNGILHGRDINFGNEYVS
                     CKCVSLLFAVADWIKQKTNEVERKDSFVKSQTNESIVDLINRYQELKKFEDEIANWKR
                     RDIILGTDIPVSGVRDDYGEYSYLYPILDMFEYWRDGNYGQLSKLLEDAKNMNTSNGK
                     WAGQIREIFNEKKYNSFEFITIDEKTYAKSEITVKVEWEQDSSIRTESLRFNCVYTGL
                     KEEDNLVAPWRENGEWRLIPLDVEKIFY"
     gene            complement(9405..12056)
                     /locus_tag="U1404_000431"
     CDS             complement(9405..12056)
                     /locus_tag="U1404_000431"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014623308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEM5347414.1"
                     /translation="MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDAEAKPYSIVIP
                     PPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQG
                     VTRYDLGREKFLDKVWEWKDEYAATIREQWGKLGLSLDYQRDRFTLDEGLSKAVRKVF
                     VELYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVAT
                     TRPETMFGDVAVAVNPEDPRYKDLIGKNVILPIVNKPIPIVADEHADPEFGTGVVKIT
                     PAHDPNDFLVGQRHNLPQVNVMNDDGTMNELAGEFAGMDRFEARKATVAKLQELGALV
                     EIENRVHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTADKVEFYPPRFNDT
                     FLQWMENVHDWVISRQLWWGHQIPAWYNESGEMYVGEEAPAGDGWVQDEDVLDTWFSS
                     ALWPFSTMGWPDENAADFQRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGSQPFKNVL
                     IHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDA
                     SWNFINKIWNISRYILMNNEGLTLDAARENVAKVAAGEAGNVTDRWILHNLNETIAKV
                     TENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVMTRSVLLYTLDQI
                     LRLLHPIMPFVTEEIFAQYAEGSIVVAAYPVVNPAFENAEAHKGVESLKDLIRSVRNS
                     RAEVNVAPSKPITILIKTADSELETFFKANENYIRRFTNPEQLEISSSIAAPELAMSA
                     VITGAEIFLPLADLLNVEEELARLDKELAKWQKELDMVGKKLSNERFIANAKPEVVEK
                     EKEKQADYQAKYDATVGRIAEMKKLVK"
     gene            complement(12232..12663)
                     /locus_tag="U1404_000432"
     CDS             complement(12232..12663)
                     /locus_tag="U1404_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347415.1"
                     /translation="MKSLTQTFTKKQKLVVVIVVILSVAIGFWKWRDTFFNTYYPDDT
                     SIQGQLFPNVANTKIETVENVLPFSDVKYDKIIIRIGSLSSEYDDSNQSSKANNIINR
                     KTLDENFIQWLIEAFDEEEAKKISDHIEVYYRGEIISEISY"
     gene            complement(12660..13433)
                     /locus_tag="U1404_000433"
     CDS             complement(12660..13433)
                     /locus_tag="U1404_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347416.1"
                     /translation="MKMLNKFTENSKDLRNELTSWFVIISLAFLLFLSIPWLVQKTLY
                     FTLSKPFEAQRVAITKSNKTSDTASGVEGTYINNIPFNDFEKLMNFSNVSFKSVDIQI
                     PRIYITSPIFNTSEYGDQLQDIWIDSLNKDELEEEFGSYKVYYDGNLIIENGASYTSE
                     GATKNQIISMKETIVTELDTNKEFKKYTFKKYYIPDEGTDPTEIKIIEDGFAIETVFE
                     QKDLIPNIAFGPTLYTVRAEFIKENNKLVLRKGSMEVYK"
     gene            complement(13597..14172)
                     /locus_tag="U1404_000434"
     CDS             complement(13597..14172)
                     /locus_tag="U1404_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM5347417.1"
                     /translation="MNLVIIGAQASGKMTIGQEVAKLTGMTLFHNHDSIDFSLRFIPE
                     FSEDMFDLNTRITFAVYDVFARSGRPLIGTALINFKNLIEVQFLTTVQTIFHYHGQEI
                     LFVELETALEERLRRNRTENRLTHKPLKRHIEVSEAEILSTADTCQYTSLGIPEGIQH
                     YLKINNTHLTANEVAQLIIKKMEELEQKQTK"
     gene            complement(14169..14558)
                     /locus_tag="U1404_000435"
     CDS             complement(14169..14558)
                     /locus_tag="U1404_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5347418.1"
                     /translation="MLHHVEIYVSNLETSRAFYDFLLTKLGYSLYQEWEEGLSYKKAE
                     QYLVFVQTPQDFLKAGYHRCRTGLNHLAFHVGTPDDVDQWRKEFLTRRVKLLYNDRYP
                     YAGGPDHYALYLEDPDGIKIELVGEVT"
     gene            complement(14800..15186)
                     /locus_tag="U1404_000436"
     CDS             complement(14800..15186)
                     /locus_tag="U1404_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5347419.1"
                     /translation="MAKKKVNRKKQLKKQLADLKRAGRVGLERAAEVVETVAHKAEAV
                     VEHAVEQVKEVVAEVTSSATSLEDFLALPELEGIAAARLETFYEAGIQSVADFANHTE
                     KELLALKGIGPATIKQLKEKGIELKA"
     gene            complement(15201..15458)
                     /locus_tag="U1404_000437"
     CDS             complement(15201..15458)
                     /locus_tag="U1404_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011074664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1912 family protein"
                     /protein_id="HEM5347420.1"
                     /translation="MMTKEQEFLKEFEAWVNTQVMVNEMAVEESRRVLEEDKDERAAD
                     AYIRYESKLDAYRFIQGKFANYHAGKGFHDLPDELFGQRHY"
     gene            complement(15563..16564)
                     /locus_tag="U1404_000438"
     CDS             complement(15563..16564)
                     /locus_tag="U1404_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEM5347421.1"
                     /translation="MIEVKTFGGQAKLYCLENKNGMQVTLTDFGARVVEVLLPVEENG
                     GLRNVSLAAKSDDDYRKTDLYPGSSIVPVAGRISGAQAEIKGTSYQFTENEPGRTLHG
                     GIDTANEQYWDVALDHEKNQVTFGIVLKDGFNGFPGDVRVEAIYGLTDQNELTIDYRA
                     VSSKDTIFNPTNHIYFNLTGDFQQSVAEHEIRIAANRYAPLGEDNLPTGVLEDVTGTP
                     FDFRERARFAQGFDSQHPQNILVKGYDHPWLLEQVEVPIEVVSPDGKISLRVRTNQAS
                     VVIYTYNYPVEALAAYHGAFSLECQALPNACNLGGFGSILLEKDEEFLSQTVYQFTW"
     gene            complement(16780..17181)
                     /locus_tag="U1404_000439"
     CDS             complement(16780..17181)
                     /locus_tag="U1404_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5347422.1"
                     /translation="MVRSLVLVSHGIFCEELKKSTEMIMGPQEDIYTVALLPEEGPED
                     FQKKFEETIAGLEDFVVFADLLGGTPANVVSRKLIEGGQFDLYAGMNMPMVIGFLNGV
                     LLGEAVDYVEFGTSNLVHVNSLLTSDEDDDE"
     gene            complement(17181..17999)
                     /locus_tag="U1404_000440"
     CDS             complement(17181..17999)
                     /locus_tag="U1404_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM5347423.1"
                     /translation="MTKSNYKLTKEDFNQINKRSLFTFQLGWNYERMQASGYLYMILP
                     QLRKMYGDGTPELKEMMKLHTQFFNTSPFFHTIITGIDLALEESDGVASKDAVNGVKT
                     GLMGPFAPIGDSIFGSLVPAIMGTVAATMGKEGSPVGIFLWVAVAIAYDIFRWKQLEV
                     AYKEGTKLITTMRDRLTALVDAASVMGVFMMGALIATMINFEVTWAPAIGEKVIDIQD
                     ILNTIFPRLVPAIFTGFVFWLLGRRGMTSTKAILIIIVLALGLSAIGHFLFGMV"
     gene            complement(17986..18888)
                     /locus_tag="U1404_000441"
     CDS             complement(17986..18888)
                     /locus_tag="U1404_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5347424.1"
                     /translation="MMQWWQILLLTLYSAYQICDELTIVSSAGSPVFAGFITGLIMGN
                     MEVGLLIGASLQLVVLGVGTFGGASRIDATSGAVLATAFSISQGLDPEIAISTIGVPV
                     AGLLVYTDILGRFTTTFFAHRVDAAIERFDYAGIERNYLLGAIPWALSRALPVFLALA
                     FGGGIVETLVTTIELPEYKWIAAGLTLAARMLPGLGFAILLHYLPLKRNLHYLAVGFA
                     LTAMLTVLYGNVSALGGAVAGIVGTLPEDAGVSFVNNFKGLSMIGIAIVGAFLSVIHF
                     KNSQKVTVVAPSNSESGEIEDDEI"
     gene            complement(18927..19412)
                     /locus_tag="U1404_000442"
     CDS             complement(18927..19412)
                     /locus_tag="U1404_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HEM5347425.1"
                     /translation="MAIIATRIDGRLIHGQVANLWTTKLNIGRIMVIDDAVAQNDIEK
                     QGLKLACPPGVKLSILPIEKAANNIKEGKYDSQRLLIVARRPENFLRLVEYGVELPEL
                     NVGNMSQTPETRSVTRSINVVDKDIADFDALAAKGVKLFAQMVPGDSPKDFMPLLDKV
                     R"
     gene            complement(19466..21238)
                     /locus_tag="U1404_000443"
     CDS             complement(19466..21238)
                     /locus_tag="U1404_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEM5347426.1"
                     /translation="MKEFYIGDQFYLDGEPFKILSGAIHYFRVHPDDWYHSLYNLKAL
                     GFNTVETYVPWNMHEPRKGEFCYEGILDIERFLKLAQELGLYAIVRPSPYICAEWEWG
                     GLPAWLMKEELRVRSSDSVYLQHLDEYYASLIPKLAKLQLAQGGNVLMFQVENEYGSY
                     GEEKEYLRSVAGLMRKHGLTAPLFTSDGSWRATLRAGTLIEDDVFVTGNFGSKARENF
                     ANMTAFFNEHQKNWPLMCMEFWDGWFNRWGDEIIRREPEEMVDSVMECIELGSLNLYM
                     FHGGTNFGFMNGCSARGQIDLPQVTSYDYDAILDEAGNPTKKFYILQQRLKEVYPELE
                     YAEPLVKEAKAFSDVSLHDKVSLFATLENVSGCVKGFYPKNMEELDQSTGYILYRTEL
                     ERDKTEAERFRVVDARDRIQIYADGKFVATQYQTEIGDDVELDFKDDKLTLDILVENM
                     GRVNYGHKLTAPTQSKGLGRGAMADLHFIGHWETYPLPLDSVEDLDFSKGWEEGQAAF
                     YRYQFELDELADTYLDMTGFGKGVVFVNNVNIGRFWEKGPILYLYIPKGYLKKGANEI
                     VVFETEGKYREKIHFSQRPVIKDL"
     gene            21445..22155
                     /locus_tag="U1404_000444"
     CDS             21445..22155
                     /locus_tag="U1404_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5347427.1"
                     /translation="MKVPKYQLIQNDLRQQIVSGKFENGDKFYTESELTKLFNVSSIT
                     VIRAVNELVKDGYLVRQQGKGTFVSRSRKGRLVEFSDIEIFPMDKDKVTVLSCEKGNK
                     PDILEKLNLDKNEFYYKIVRVRAAEDTPYIFHNSYIPQRYIQNPDAPLEHYQSIYQRF
                     KLDYNIHMSEEPFVETNEIVSPCPKEVATHLKLKATEPAVLQNKTTTNSTSGEVMEYT
                     ETYKHWKYYKFEITANHR"
BASE COUNT         6520 a         5030 c         3951 g         6670 t
ORIGIN      
        1 ttaaatgact gtactaagaa cttgctattt ttgggatttc attgagtatt aaaatttatc
       61 tacataaaaa caccttgaaa atacgcttgt catttattat aaataacgag agcttcttca
      121 agatgtatca cagaatataa tttctttagc taatagattg ccactactgt ccaaaaagct
      181 ggataaaatt ccttagtaat atcgtattac ggtattcaaa aatcaaagac tctgctaaaa
      241 ttttgtatcg tcatttaatt gataaatatc ccgcatcgcc caaaaaccaa tcagaatcat
      301 tagtagacca acccaaattt cctttggaaa ttgcatgatt cttaaaaatc caagtaccaa
      361 ggcaatcgct aatgctacca gtaaaaatac tgccgcaatc aaattcatag tccccttaat
      421 attgcgaggt gcaataaaaa tataaaaaag tactaacatg atggcaagga ttaaataaaa
      481 catgcttctt ctcctagaaa ttattcctca gtcgctaatt ttttcttctt cgcagcctta
      541 tcacgctctg ccttgttcaa gatttgctta cgaagacgga tagattctgg cgttacttcc
      601 atgtattcat catcgttcaa gaattctagt gattcttcaa gagttaagat acgtggtgtc
      661 ttaattacag acgtttggtc tttggttgct gaacgaacgt tggtcatttg ttttgcagtt
      721 gtgatgttaa ctgtcaagtc attttcacgc gagttttcac cgataatcat tccttcgtac
      781 acttcagtac ctgggttgac aaagatggta ccacgctctt caatacgcat gatagagtat
      841 gtcgttgcct taccttggtc gatagagaca agggcaccac ggtgacgacc accgatctca
      901 ccttgaacaa caggcaagta ttggtcgaaa gtatggttca tgataccgta accacgagtc
      961 attgaaagga attctgttga ataaccaatc aaaccacgcg caggaacaag gaatacaaga
     1021 cgagtttgac catttcctgt cgcaaccata tccaacatat cacccttacg ctcagagagg
     1081 gattggataa cagaaccttg gtattcttct ggtgtatcga tttgcacgcg ctcaaatggc
     1141 tccatcttca cgccgtcgat ttccttgatg ataacttctg gacgtgatac ttgaagctca
     1201 tagccctcac gacgcatggt ttcaatcaag atagacaagt gcaattcacc acgacctgaa
     1261 acagtccatt tatctggaga gtcagtaggg tcaacacgga gagaaacgtc tgtttgcaac
     1321 tcggccaaaa ggcgctcttc gattttacgt gatgtcaccc atttaccttc acgacctgca
     1381 aacggtgagt tgttcaccaa gaaagtcatt tgaagagttg gctcatcgat acgaagaact
     1441 ggaagtggct caaccgcatc agttggtgtt acagtttcac caacgaagat gtcttccata
     1501 ccagaaacgg caatcaaatc accagctttt gcttcttgga tttctttacg ctcaagaccg
     1561 aagaaaccaa agagttttgt aacgcggaag tttttcgttg taccatctag tttagaaagg
     1621 gtaacctggt caccaacttt aacagtacca cggaagacac gaccgatacc gatacgacct
     1681 acgaagtcgt tgtagtccaa aagggatact tggaactgca aaggctcatc tgagttatcg
     1741 actggtgcag ggatatgctc gatgatggta tcgaaaattg gtgccattgt ttcttcttgg
     1801 tccgctggat tgtcagacaa tgaagaagta ccgttgatag ctgatgcata aactactggg
     1861 aattccaatt ggtcatcgtc tgcaccgagt tcgatgaaga gttcaagcac ttcatccact
     1921 acttcctctg gacgagcaga aggcttatca atcttgttga caaccacgat tggtgtcaag
     1981 ttttgttcaa gtgctttttt caatacgaaa cgagtctgtg gcatagtccc ttcgtaggca
     2041 tctacgacaa gcacaacacc gtcaaccatt ttcatgatac gctcaacctc accaccgaag
     2101 tccgcgtgtc ccggtgtgtc catgatgttg atacgagtac cgttgtaagc tacggcagtg
     2161 tttttagcca ggatagtgat tccacgctct ttttcgatgt cgtttgagtc catggcacgc
     2221 tcatccaatt gcgtacgttc atcaagtgtt tgggattgtt tcaataattc atcaacgagg
     2281 gttgtttttc cgtggtcaac gtgggcaata atggcaacgt tacggatgtc ttctctaagt
     2341 tttgtcataa tatcctctat atattttaat ttaactaaaa aagtatatca tagattggcg
     2401 caaaaatcac agataatctt gttgtaaatg ttttcagata gcagattgaa agcagaagaa
     2461 aagagattga agccaatctc ttataaaatg ttctcaaaat tatcgcgcac ttcttgtggc
     2521 caaacactgg actggacttc accaatatgt ttcttacgaa gcaagaacat ggccaaacgg
     2581 gattgaccga taccgccacc gatagacagc gggaagagac cattcaaaag ggcacgatgc
     2641 caatcaaatt ccaaacggtc ctcgtcacct gtaatagcaa cctggcgctt cagcgcttcc
     2701 tcgtctacac gaatccccat tgaggataac tcaaaggctg aaccaagtgc ttcgttccaa
     2761 accaagatgt ccccattgag tcctttgtag cctgcttctg atgggcttgt ccagtcatca
     2821 tagtctggtg cacgtccgtc atgtggttta ccatctgcca gttcaccgcc gataccgatt
     2881 aggaagaccg caccgtattc tttggcaacc acattttcac gctctttggg tgtcaagtct
     2941 gggaagttct tgaccaaatc ctctgtgtgg ataaaggtga ttttctttgg taaaacagac
     3001 tcaatgtcat aacgagcctc cactgccaac tctgtcagac ggatagcctt gtaaatctgc
     3061 tccactgttt ctttcaagta agctaaattc cgacgaccat caggaataac cttctcccag
     3121 tcccattgat ccacgtatac tgagtgaatg ggatccaagg aatcctcgtc aggacgaaga
     3181 gccttcatgt gaacaaagag cccttctccc tcattaaaac cgaaacgagc caaggtatgg
     3241 cgcttccact tagcaagtga gtgaaccact tcataggtcg catctggaat taacttcaca
     3301 ttaacagtaa ccgcattctc cacaccggac aaattatcct gcataccatc cccgacacaa
     3361 ctcaaaatcg gtccttgcac ttctacgatt tctagcttgt ctttcaaata ctgagtgaat
     3421 gtatttttga cgaaagaaat ctcctcttgc tgatgaatga agcttttctt cataccttac
     3481 ctcctcgtaa atttatacac cttattatac tcttttttac ccacttgtaa agtcttttta
     3541 ttaaatattc tgataattta atggaggttt ttcacttcag atgtcagcac ttctatcacg
     3601 ccctctgtca agcgtctagg tccacgcacc gccttgactc ccaagtccat catgcgtgct
     3661 ctcggcaaca catcatcgga aaactgagca agcaattcca cctgcatgag tttcttttct
     3721 gtcggaatat ctgactcccc gtgattttct aaattcgccc ctaagacccg acagacatag
     3781 cgaatagcct ttaccggcgc cgtgacataa atggcaacga tgtccccagc ttgaatggtt
     3841 gatttttgtg gccaatagac taccatattt tccgcaaact cggtatcaat atcatagacc
     3901 tttggattgg ctggaatgac ccagtaatct ggtccctgct ctgccttgta ggattttggt
     3961 cctaccagat aacggctctt ctcaaggagg gcaaaaacca tctggtcctc caccgtatca
     4021 tccagcaaga ccgacaccca ggtcttctta gacatgtgat aggctgggaa gatgcccgac
     4081 tgactcagca gctctgctat ttcccgacca tcgaccttga gattgacaat ctccacctct
     4141 tctttagacc cgctcccatc cagcttgtcc ctcggaatct gactgaccag ggcgtaccac
     4201 ttgttattgt tgggatggcg aaaagcccca taggtcggca acttggcaaa gggatagtca
     4261 ggaaggtcgc cccactgctc cttgatgagc tgggctatgc ggttactttg gtctttggta
     4321 aatggcagag cgatacagca ggcctcctct acccgagcca aaatggactg ataactttct
     4381 ctcacctgcc caacaaaagc cccagctgga gcagtcacca gatgggcggt atagacctcc
     4441 tccatctcac aatcccagac atatgaagac agctgaccag cctcatcaac ctccacaacc
     4501 gcctcaaact gcccctccat gaagacctca cggtaggtgt aacgattgtc ggcgagaata
     4561 aaaccgaaag ggatgaggga ggggaggtgg gcaatttgtc tagacatttt aactccttta
     4621 aagtaatata tagagaaagt ataacaaaat ctgtaaaaga atttattgtg gaggtcaaat
     4681 cttgtcaaaa aaaattatta gtgtggtagc tgcagcaatt gaaaaagatg gaaaaatatt
     4741 ttgcgctcag cgccctgaag gaaagagttt aggagggtat tgggaatttc caggaggaaa
     4801 actcgaagcc aatgaaactc ctgaagaagc cttagttcgt gaaatcaaag aagaatttga
     4861 ttccgaaatc gaaatagtat ctttcatcaa cgaagcatct tatgaatatg attttggtat
     4921 cgtgacaatg aaaacctacc tttcaaaatt agtcacgggt gatttaactt tattagaaca
     4981 ccaggattct aaatggctcc ccatcgaaga tttagagaca ttagaatggg ctccagtaga
     5041 tattcctgcc gtcaaatgtt tgcaacaaaa atagagattc gctggaatct ctatttttta
     5101 tttatctgtc aaatacttat acaagtttgt ctccactggt gaatccaact taaataacat
     5161 ttggacaact gaatctccat ttttcattac ttcacttgca ctattttcaa cgtatgatag
     5221 tggaccaaga taataaaatt ctccaccttc tgaatcatct tttatgacaa aaagttctaa
     5281 cctcaatcca ttttcattag attgagtaat cgtcgataca tcattagaat ctaatgtacg
     5341 tttgttcttt gaaaaccact tcaaagttga ctcatttaga agttcgtcat cgtattttat
     5401 ggtatcacta atatcctcac ttttatggta agtgatgaaa atcggacaag aattggtgtc
     5461 cttatcaatt ttgtatccac caatatttaa aggtggttcg tcttttgcga cattcattaa
     5521 tttaagcact tcacgtcgag tatatttctg accaagtgtg aaaatttcag gataatcttt
     5581 cgattttaga atccctgttt caatgacatc caaaaataat tgagtgaatt tggtattatt
     5641 caccaaagat tcttggattt cttcattcaa ccgatacagt tcaccgtcaa aagtaaccag
     5701 tgcatccgta ccatatttct tttgctcctg ggcttttaga aatgataggt ccaacactct
     5761 tgttaccgaa tctaaaacat ctgtttgaaa atctaaatca tgctcaataa tacattcaaa
     5821 ccatttatct gacgaaacta gtccctcatt ttcgacaagc aacttcaaca aatacagttc
     5881 atgttttcgt ttgccattca agatttcaaa tgtaataaaa ttcaaaaatc gcttttctac
     5941 ttctgataga aggattgttt cttctgaaaa tttattgatg acatctccgt aattttgaaa
     6001 actagagttt tcaaaaaaga caagcggatc aatgctgttt aattttatga aatctgatag
     6061 atacggaact ctacccaact tattctctaa gtctttaaaa gcatctcgta aaattttgat
     6121 tgatgagagt gtcgtatttg tgatagaaga aaaaatttgt tctttggcaa ccttctcaaa
     6181 gttgattgtc gtcaatcctt ttaaaatgtt gggctctctg acctcacgac gataattgtc
     6241 tttgttcata gactgatcgc caaatagtgc aacaggaatt agatagttgt tttgatagtt
     6301 tccaatgaaa tcaataatcg taacatattc tttcgaatcg tgctttcgca agcctcgacc
     6361 taattgttga ataaaaatga tactcgattg ggtattgcga agcatgacaa cctggttgac
     6421 actcggaata tcaattccct cattaaaaat atcaaccgtc agaatatagt ctaagtttcc
     6481 attttctaag tcttgaacta ctctctgtcg ttccttttgg ctatgttccc cagaaagagc
     6541 gcttgtacgg agtcctcttg cattaaactg cccctctagc tcttttgctt catttactga
     6601 agaacagaaa atcaatcctt ttaccgcctc accacttact ccatagtaag caattttttc
     6661 taaaatatga ttgacacgtt gttcagaaac taaatttgaa aaagtggctt tttcatcaat
     6721 taattggcca tcaatcttaa tgtctgaaac accgtagtat ataaatggac aaagcatatc
     6781 attatcaagt gcctcttgta aacggatctc ataggcaata ttatagtcaa aaagctcata
     6841 aatattttgt ccatctgttc gctctggtgt tgctgtcatc cctaaataaa aatctggctg
     6901 aaaataattc atcacttttt tataggagtc tgcacctgct ttatgaacct catcaatcaa
     6961 aatatagtta aagaaagttg ggtcaaaagc ttgaaggtta tctgctctcg aaatcgtctg
     7021 aatagtcgca aagatatacc tcttctgtga tatatccatc ccactcttat aaatacagcc
     7081 ctcatcatcc tcaaatccta acaccttttg aaagtctttt aatgattttt gtaggatttg
     7141 ttctcggtgg actataaata acattcgatc tggattgtat tgtttgacat caaaggcaga
     7201 aagataggtt ttacctgttc cagttgcact aatgaccaga gctttttgtg caccattttt
     7261 cctaacggtt gcgagacctt ctagagcttg ctcttgcatc ttgttgggac gaatggtttc
     7321 ttggtaagat gctattgact cgtcccgaat catcgctgtt tttatcaccg tctgcctacg
     7381 agctgaatat gcattgattg cttctaggtc taaaacaatt gatttttccc aaatacgatc
     7441 aaactcttct tttgcattct ggataaaatc accgttatgt gttgaagtca atttcacatt
     7501 ccactcatag ttaattttca aggctgtatg agttaaattt gaactaccag aaatgataac
     7561 ctgtttatct ttttgctcaa acagataaaa ctttgcatgc atttgcaaat tgactggtgt
     7621 tatccgtact tggacatttt tcagtttaag caattctttc atcgctatgg gatcgttgaa
     7681 atccagatac ggagaaatca aaattctccc ttggatcccc tcatccgcca aatctgataa
     7741 ttgactttta attagggcta gtccagactg agtaataaaa gccacactga aggcaaaaga
     7801 ttgggccttg cttaactctt cttgaatatc atttaaaaca tagcgatgag tctctgtatc
     7861 atttattaaa attttaggcg aatagacccc ttcttgaaaa atctctctat caatgaaacc
     7921 atattgcaaa gaatgaagaa gctggtcttg gaataagttg ttgttggaca tgataggttt
     7981 cctttatctc tatatagaat tattatctgt aaaattcaga aaattgtaaa gtcaggaaac
     8041 aaattattta ataacttagt agaaaatttt ctccacatcc aagggaatga gcctccactc
     8101 tccattttcc ctccacggtg caaccaaatt atcctcctct ttaagaccag tataaacgca
     8161 gttgaatctc aaagattcgg ttcttatcga actatcttgt tcccattcta ctttcacagt
     8221 aatctctgac tttgcatatg ttttttcatc aatcgttatg aattcaaatg aattatattt
     8281 cttttcatta aatatttctc ttatttgacc tgcccatttt ccattggaag tattcatatt
     8341 ttttgcatct tctaataact tcgaaagttg tccataattt ccatctctcc agtattcgaa
     8401 catatctaat atagggtata aatatgaata ctcgccataa tcatctctta caccacttac
     8461 gggaatatca gtaccgagaa ttatatcccg tcttttccaa tttgctattt catcctcaaa
     8521 cttctttagt tcctgatatc tattaatcaa atccacaata gattcgtttg tttgtgattt
     8581 aacaaaacta tcttttctct caacctcatt tgttttttgc tttatccaat cagcgacagc
     8641 aaaaagtaat gaaacacact tgcaagatac atactcatta ccaaaattta tatcccttcc
     8701 atgtaatata ccatttctgt atggtaatct aatttcatct ttattcgttt ttcgtcgact
     8761 agatgtaaaa attgatacta tttcttttaa cgacttatta ctacccacaa atgaatccca
     8821 tacatttagt tctaaacctt ctgcaaacaa acacttgtta tctttatttt ttgtaaaatc
     8881 attaactgca ccgtcaacaa tgattaaacc aagtggcacg ctacaaatat aattgccttt
     8941 aaaatgttcc tcaaaaaata catctatcaa atgagaccta tctaaaagaa ctttggaact
     9001 ttttttaatc caatgcactt tttttcttac ttcatttttg aagtaatcta tcagtattct
     9061 ttctgcttta tcaataccat ttttttcata ttccgagttt actctctgca ctatatcaaa
     9121 gtccatactt tcatagagac accaaccttg ttgagaaaaa ttttccataa atagggcaga
     9181 ttcttgagaa aaattaaaaa ccgaactttt taactcagaa atttctgacg gcacttctcc
     9241 attcaatgac atagaaaaat cttccaaatt attaagttga tctattaaat aatttaatga
     9301 taccaaatta ttatccactt gattggcctc ttatacataa tatattaaag aaattatacc
     9361 acaaaaccca gccattttag gttgggcttt ttatcgtatt ctacctactt aaccaatttt
     9421 ttcatttctg cgatacgtcc tactgtcgca tcatacttag cttggtagtc ggcttgtttt
     9481 tctttttctt tttcaacgac ttctggtttg gcgttggcga tgaagcgttc gttgctgagt
     9541 tttttgccga ccatgtctag ttctttttgc cacttggcaa gttctttgtc tagacgagcc
     9601 aactcttctt cgacgttgag gaggtcggcg agtggcaaga agatttcagc accggtgata
     9661 acggctgaca tggctagttc tggtgcggca atgcttgagc tgatttccaa ctgctctggg
     9721 tttgtaaagc gtcggatgta gttttcattt gccttgaaga aggtttcaag ctcgctatct
     9781 gccgtcttaa tcaagatggt aatcggctta gaaggagcaa cgttgacctc tgctctgcta
     9841 tttcgcaccg aacgaatcag atccttaagg ctttccactc ccttgtgagc ttcagcgttt
     9901 tcaaaggctg ggttgacaac agggtaagct gccaccacga tagagccctc tgcgtactga
     9961 gcgaagatct cttccgtcac aaacggcatg atagggtgga ggaggcgaag gatttggtcc
    10021 agcgtgtaga gaaggacaga gcgggtcatg actttctcag cctcgttgtc gctgtaaagc
    10081 acctccttgg tcagctccac ataccagttg gcgaactctt cccagatgaa gttgtagagg
    10141 atgtggccag ccacaccaaa ctcaaacttg tcgaagtttt cagtgacctt agcgatggtt
    10201 tcgttaaggt tgtggagaat ccagcggtcc gtcacgttgc cagcctcacc agctgcgact
    10261 ttggcaacat tctcacgcgc cgcatccaaa gtcaagcctt cattgttcat gaggatgtag
    10321 cgggaaatgt tccaaatctt gttgatgaaa ttccaagaag cgtccatctt ctcataagag
    10381 aaacgaacat cttgaccagg ggcagagcca tttgacaaga accaacgcaa agcgtccgca
    10441 ccgtatttct cgatgacatc catcgggtca atcccgtttc cgagtgattt agacatcttg
    10501 cgaccttctt cgtcacgaat caaaccatgg atcagcacgt tcttgaatgg ctgactgcct
    10561 gtgaactcaa gcgattggaa aatcatacga gacacccaga agaagatgat gtcgtagccc
    10621 gttaccaagg ttgaagttgg gaagtaacgc tggaagtccg ccgcattttc atcaggccag
    10681 cccatagttg agaatggcca aagggcagag ctgaaccagg tgtctaggac atcctcatcc
    10741 tgtacccaac cgtcacctgc tggggcctct tctccgacgt acatttcgcc agattcgtta
    10801 taccatgctg gaatctgatg gccccaccaa agctgacgag aaatcaccca gtcgtgtaca
    10861 ttttccatcc attgaaggaa agtatcgttg aaacgtggtg ggtaaaattc taccttatca
    10921 gctgtgtctt ggttggcaat ggcattctta gccaattggt ccattttaac aaaccattga
    10981 gttgacaaac gtggctcgac taccacacct gtacgctcag agtgtccaac agaatgcaca
    11041 cggttttcga tttccacaag ggctcccagt tcttgcaact tagcaaccgt tgccttacga
    11101 gcttcaaagc ggtccatacc tgcaaattcg cctgccaact cgttcatagt accatcgtcg
    11161 ttcataacat tgacttgtgg cagattgtgg cgttgaccta cgaggaagtc atttggatcg
    11221 tgggcaggtg tgattttcac aacccctgta ccaaattcag gatccgcgtg ctcatccgca
    11281 acgatcggga ttggcttgtt gacgattggt aggataacat ttttgccaat caagtccttg
    11341 taacgtgggt cttctgggtt aaccgccacc gcaacgtcac cgaacatggt ttcaggacga
    11401 gttgtcgcaa cttgaagggc acgagaaccg tcttccaaca tgtaattcat gtggtaaaag
    11461 gcaccttcta cgtccttgtg aataacttct atatctgaaa gggctgtgcg agctgcaggg
    11521 tcccagttga tgataaattc gccacggtag atccagcctt ttttgtagag ttcaacaaag
    11581 accttgcgaa cagcttttga caagccttcg tccagcgtaa agcggtcacg ttggtagtcc
    11641 aaagacagac ccaacttgcc ccattgctca cgaatggtcg ctgcgtattc atccttccat
    11701 tcccagactt tgtcgaggaa tttctcacgg cccaagtcat aacgagtcac accttgctca
    11761 cgcaagcgct cctcaacctt agcctgagtg gcaatccccg cgtggtccat acctggcagc
    11821 cagagggtgt caaagccctg catacgtttc tggcggataa taatatcttg aagggtggta
    11881 tcccaagcat gtcccaagtg caacttacca gttacgtttg gtggcggaat gacgatagaa
    11941 tacggcttag cctccgcatc gcctgacggc ttaaagacat cttggtccaa ccaagtttgg
    12001 taacgaccag cctcaacctc agctggatta tattttggtg ataattcttt tgacattaat
    12061 ttttctcctt tagtattctt taagaaaatt ggtttatact atcctcaagc tagaaatagc
    12121 aaaacttttc tttttcatat aatctcctag aaatagtcag tcctttgggc tggctatttc
    12181 gtttttcatt cttgaaccct gcatctacgg gcgagagagg tttgtgtaac gttaataact
    12241 aatttcgctt attatttcgc cacgatagta cacttcgata tgatcagata tttttttagc
    12301 ttcctcttca tcaaatgctt ctatgagcca ttgtatgaaa ttttcgtcta atgtttttct
    12361 gtttatgata ttatttgctt tcgatgattg attagaatca tcgtattctg aagacaggct
    12421 accaattctg ataattatct tatcatattt cacatctgaa aatggcaaga cattctcaac
    12481 ggtttcaatc ttcgtgtttg caacattggg aaacaactgc ccttggattg aagtatcgtc
    12541 aggataatac gtattgaaaa aagtatcacg ccatttccaa aaacctattg ctacggatag
    12601 tatcactaca atcaccacta ctaatttttg tttcttggtg aaggtttgtg tcaaactttt
    12661 catttgtata cctccatgct ccccttcctc aataccagtt tattgttttc ctttataaac
    12721 tccgctctca ctgtgtacag agtaggacca aaagcaatat tagggatcaa atctttttgt
    12781 tcaaacaccg tttcaatagc aaatccatct tctataatct taatttctgt tggatctgta
    12841 ccctcgtctg ggatataata ttttttaaat gtgtattttt tgaattcctt gtttgtatct
    12901 aattcagtga caatcgtttc tttcatagat attatttgat ttttagtagc accctcgctt
    12961 gtataggatg caccattttc aataatcaaa ttaccatcat agtaaacttt gtaggaaccg
    13021 aattcctctt caagttcatc cttatttaaa gagtctatcc aaatatcttg taattggtcc
    13081 ccatattctg aagtattaaa aataggactc gtaatataaa ttcttggtat ttgaatatca
    13141 acacttttga aagacacatt gctaaaattc atcaattttt caaaatcatt aaagggaata
    13201 ttattgatgt aggtcccttc aactccagag gcagtatctg aagttttgtt tgattttgtg
    13261 atggctactc tttgtgcttc aaatggtttt gataaagtaa aatataaagt cttttgcacc
    13321 aaccaaggaa tgctcaagaa taataagaag gctagcgaaa tgatgacaaa ccagctagtc
    13381 aactcatttc tcaaatcttt tgaattctct gtgaacttgt ttaacatttt catagacagt
    13441 atactcctaa ttcatatttt aatacactgc acgcaaaata gtatgctcca tgagataagc
    13501 atgatgtaat atagtagcag gactgaactg atagtactaa tagaaatagt ttatgcctat
    13561 ctggattata ttctgtttcg cccctcaacg gaaaggctat ttcgtttgtt tttgttcaag
    13621 ttcctccatt tttttgataa tcagttgagc aacttcatta gcagtaaggt gagtattatt
    13681 aattttgaga taatgctgaa tgccctctgg aatgcctaat gaggtatatt gacatgtatc
    13741 agctgtagag agaatctcag cctctgaaac ttcaatgtgt cgtttcaaag gtttatgggt
    13801 cagtcgattc tctgtccgat tacgccgcag acgttcttcc aaagcagtct ccaactcaac
    13861 aaataaaatt tcctgaccat gataatgaaa aatcgtctga acagttgtaa ggaattgaac
    13921 ctctatgaga tttttaaaat taatcaaggc agttccaatt agtgggcggc ctgacctagc
    13981 aaacacatca taaacagcaa atgtaatacg tgtattgagg tcaaacatat cctcagaaaa
    14041 ttcaggaata aaacgtaggc taaaatcaat cgaatcgtga ttatgaaaaa gggtcatccc
    14101 tgtcaatttc gcaacttcct gcccaatggt catcttgcca gaagcttgtg ctccaataat
    14161 tactaaattc atgttacctc ccccaccaac tctatcttaa tcccgtccgg gtcttccaaa
    14221 tagagggcgt agtggtctgg tcctcccgcg tagggatagc ggtcattgta aagcaatttg
    14281 actcgtctgg tcaaaaattc cttccgccat tggtcaacat catcaggtgt tcccacatga
    14341 aaagctagat gattgagacc tgtgcgacag cggtgataac ctgcctttaa gaagtcctgt
    14401 ggcgtttgga caaagaccaa gtactgctct gcttttttat aagatagccc ttcctcccac
    14461 tcctgataga gcgagtatcc cagcttggtc aggagaaagt cgtaaaatgc acgcgaggtt
    14521 tccaaattag aaacgtaaat ttcaacatga tgtaacatat tttctccttt ccaaatgaaa
    14581 atccccgcct agacttgcta gacagggacg aagttattcc gcggtaccac ccttgttcag
    14641 atacattatc tgcactctgc ttattcgatt cacatcatca gcaaccagtt ttgacatttg
    14701 tgcggatttc tcagtaccac cgcttcctgt gacaaatgga gatcaaaaca cctctgaatg
    14761 gctttattgt aacaaattgc accttgaaaa gcaagggatt taagctttca actcaatccc
    14821 tttttctttc aactgcttga tagttgcagg accgatgcct ttaagagcca agagctcttt
    14881 ttctgtatgg tttgcaaaat cagccacaga ttgaataccc gcttcgtaga aggtttccaa
    14941 acgtgctgcc gcaatgcctt ccaactcagg aagtgccaaa aagtcttcca atgaagtcgc
    15001 tgaagaagtc acctctgcta caacttcttt cacttgttcc acagcatgct ctactacagc
    15061 ctcagccttg tgagcaactg tctctactac ctctgcagct ctttcaagac ctacacgacc
    15121 tgcacgtttc aagtctgcta attgtttttt caactgtttt tttcgattta cttttttctt
    15181 tgccatgtta actcctctcc ttaataatgc ctttgaccaa acaactcatc tggcaaatca
    15241 tgaaaacctt tgccagcatg gtagttggca aatttccctt gaatgaatcg ataggcatcc
    15301 agcttgctct cataacgaat ataagcatcc gctgcacgct catccttgtc ttcttccaag
    15361 acacgacgac tttcttcaac cgccatctcg tttaccatga cctgagtgtt gacccaagcc
    15421 tcaaattctt ttaaaaattc ttgttctttt gtcattattt tcctctttcg tctgcttcgt
    15481 ttgaaacaca ccggtttatt ataccatatt ttttagaaaa cacaagaaaa gcctaactgc
    15541 aacacagtta gagctctcct tcttaccaag taaattgata aacagtctgg gacaagaatt
    15601 cctcgtcttt ttccagcaaa atagaaccaa aaccgcctag gttgcaagca tttggcagag
    15661 cctggcattc caagctaaag gcaccatggt aggcagccaa agcttcaaca ggataattgt
    15721 aggtgtagat gacaactgat gcctgattgg ttcgcacgcg cagacttatt ttcccatctg
    15781 ggctgacaac ttcaatcgga acctctacct gttccaaaag ccatggatgg tcgtaacctt
    15841 tcacaaggat attctgaggg tgctggctgt caaagccctg agcaaatctt gctctctccc
    15901 taaagtcaaa cggtgttcct gtcacatcct ctaagacacc ggttggcaga ttatcctcac
    15961 caagcggagc atagcgatta gccgcaattc gaatctcgtg ctctgccact gactgctgaa
    16021 aatcccccgt taagttgaaa tagatgtgat tggtcggatt gaaaatcgta tctttgctag
    16081 acaccgcccg ataatctatc gtcaactcat tctggtctgt tagaccataa atagcctcaa
    16141 ctctcacatc tcctggaaaa ccattgaaac catcttttaa gacaatccca aaggtaactt
    16201 gatttttctc atgatctaga gcaacatccc agtactgttc atttgccgtg tcaatcccac
    16261 catgcaaggt acgacctggc tcattttctg tgaactgata actggttccc tttatctcag
    16321 cctgagcacc tgaaatacgc cccgctactg ggacaatgct tgaaccaggg tacaaatctg
    16381 tcttgcggta atcatcatcc gacttggcag ccaaactgac attccgtaga ccgccatttt
    16441 cttctactgg caaaagcact tccaccactc tggcaccaaa atccgtcaag gttacctgca
    16501 tcccattctt gttttccaag caatacagtt ttgcttgtcc accaaatgtt ttcacttcaa
    16561 tcatttcttt tcctcacaag ccaaatgagg gagtcactat tgcaactccc tcaggatact
    16621 taaagcctat caactataga acattttata attaacgaaa ttcaaatccg tctgtaacaa
    16681 tcggctgagt tagcctcact ctcttatttc taggctcggg ctgtctttgg tcactctttc
    16741 atttcaaggt gaccagttga aacagttccc caaactgttt cactcatcgt catcttcatc
    16801 acttgttaat agactattga catgaactag gttgcttgtc ccaaattcta catagtccac
    16861 agcctctccc agcaggacgc cgttcaagaa accgataacc attggcatgt tcatccctgc
    16921 atagaggtca aactgcccac cttcaatcaa ttttcgtgat acaacgttgg ctggtgtacc
    16981 gcccaacaag tctgcgaaga caacgaaatc ttccaatcct gcaattgttt cttcaaattt
    17041 tttctggaag tcttctggac cttcttctgg taataaagct actgtgtaga tgtcctcttg
    17101 aggacccata atcatttcag tagatttttt caactcctcg cagaagatgc catgacttac
    17161 taatactaaa cttctaacca ttataccata ccaaatagga agtgaccgat tgctgacaag
    17221 ccgagtgcaa gcacaataat aatcaagata gctttagtcg aagtcatacc acgacgacca
    17281 agaagccaga agacaaatcc tgtaaagatt gcaggtacta ggcgtgggaa gatggtattc
    17341 aaaatgtctt gaatatcaat cactttttct ccaatagctg gagcccaagt cacttcaaag
    17401 ttaatcatag ttgcaatcag ggctcccatc atgaagacac ccattacaga tgctgcatca
    17461 acgagagctg tcaagcgatc gcgcatggtt gtaatcaact tagtaccttc tttgtaggca
    17521 acttccaact gtttccaacg gaaaatatca taggcaatgg ctactgctac ccaaagaaag
    17581 ataccaactg gcgatccctc tttacccata gtagcagcca cagtccccat aatcgctgga
    17641 acaagagaac caaagattga gtcaccgatt ggagcaaatg gtcccatcaa acctgtctta
    17701 acaccgttaa ccgcatcttt agaagcaacg ccatcacttt cttcaagtgc caagtcaata
    17761 cctgtgatga tggtatggaa gaatggtgaa gtattgaaga actgagtatg caatttcatc
    17821 atttccttca actcaggagt accatctcca tacattttac gcaattgtgg caaaatcatg
    17881 tagaggtagc cagatgcctg catccgctca tagttccaac caagttggaa agtgaacaag
    17941 ctacgtttgt tgatttgatt aaaatcttct tttgttaatt tgtaattaga tttcgtcatc
    18001 ttcaatttcc ccactttctg aatttgatgg agcaaccaca gttacttttt ggctattttt
    18061 gaagtgaatc actgaaagga atgcacccac aatagcgata ccaatcattg acaaaccttt
    18121 gaagttattg acaaagctta cgcctgcatc ttcaggaaga gtgccaacga taccagcaac
    18181 tgcaccaccc aaagctgata cgttaccgta aagaacagtc aacatagctg taagagcgaa
    18241 acctactgcc aagtagtgaa ggttacgttt aagtggaaga tagtgaagta agattgcaaa
    18301 tccaagacct ggaagcatac gagctgcaag agttaagcct gctgcaatcc atttgtattc
    18361 aggcaactca atcgtagtga caagagtttc tacaatacca ccaccaaaag caagggcaag
    18421 aaaaactgga agtgcacgag aaagtgccca aggaattgca ccaagaaggt agttgcgttc
    18481 aataccagca tagtcaaaac gttcgattgc tgcatctaca cgatgagcaa agaaagtagt
    18541 ggtgaaacga cccaaaatat ctgtatagac caacaatcct gcaactggta cgccaatagt
    18601 ggaaatagca atttctggat ctaaaccttg tgaaattgag aaagctgtcg caagaaccgc
    18661 accagatgtt gcatcaatac gtgacgcacc accgaaagta ccaactccca agacaactag
    18721 ctgcaaactt gcaccaatta gcaagccaac ttccatgttc cccatgatta aaccagtgat
    18781 aaaccctgca aagactggtg aacctgctga cgatacaatt gtcagctcgt cacaaatctg
    18841 gtaagcagag tagagcgtta gaagtaatat ttgccaccat tgcataatag tgatcctcct
    18901 ttaaattttt caaaaatatc cgaatgttat ctaaccttat ccaataatgg cataaagtct
    18961 tttggtgaat cgccaggtac catttgtgca aataatttta cacccttagc cgccaaggca
    19021 tcaaaatctg caatatcctt atctacaacg ttaatagaac gagttacaga acgagtttcc
    19081 ggagtttgag acatattccc tacgttcaac tcagggagct caaccccata ctctaccaag
    19141 cgaaggaagt tttctggacg acgagcaaca atcaagagac gttgactatc atacttgccc
    19201 tccttaatat tattagcagc cttttcaatc ggtaaaatcg ataattttac gcctggagga
    19261 catgctaatt tcagtccttg tttttcaatg tcattttgag caacagcatc atcgataacc
    19321 ataatacgac cgatgttcaa tttcgtcgtc cataagttag caacctgacc gtgaatcaaa
    19381 cgaccatcaa tacgcgtagc aataattgcc atacagtgtt ctccttttct tcataaatct
    19441 tttgagcaga aaccgattaa aatttctaca agtcttttat aacgggtctt tgtgaaaaat
    19501 gaatcttctc tctatatttt ccttctgtct cgaagacaac tatttcattc gctcctttct
    19561 ttaagtatcc ttttggaata tagagataga ggattggtcc tttttcccaa aaacgtccaa
    19621 tatttacatt attaacgaaa acaactccct taccaaaacc tgtcatatct aagtaagtat
    19681 ccgcaagttc atccagttca aactgataac gatagaaagc agcttgacct tcctcccagc
    19741 ccttactaaa atccaggtcc tcaactgaat caagaggcaa aggataggtt tcccaatgac
    19801 caataaaatg taaatcagcc atcgcacctc gaccaagccc tttagactgg gtaggagccg
    19861 ttagtttgtg cccataattg acacgtccca tattttctac caaaatatct aatgttagct
    19921 tgtcatcttt aaaatccaat tcaacatcgt caccaatctc tgtctgatac tgagttgcaa
    19981 cgaattttcc atctgcataa atttggatac ggtcacgcgc atcaactact cggaaacgtt
    20041 ccgcttctgt cttatcccgc tccaactctg ttctatataa aatataacct gttgactgat
    20101 caagttcttc catattctta ggataaaacc cttttacgca accgcttaca ttttctagag
    20161 tagcaaataa actcacctta tcatgaagcg acacatctga aaaagctttt gcctctttta
    20221 caagcggttc tgcatactct aattcaggat agacttcttt caaacgttgt tgcaaaatat
    20281 agaacttctt agtaggattt ccagcttcat ccaatatagc atcataatca taagaagtta
    20341 cctgaggcaa atcaatttga ccacgagcag agcaaccatt catgaaacca aaatttgttc
    20401 caccatggaa catgtacaga ttcaaggagc ccaattcgat acattccata accgaatcaa
    20461 ccatttcctc cggctctcta cgaataattt catcgcccca acgattgaac caaccatccc
    20521 aaaattccat acacatgagt ggccaattct tctgatgttc attaaagaat gccgtcatat
    20581 ttgcaaaatt ctctctagct ttagaaccaa agtttcctgt tacaaataca tcgtcctcta
    20641 tcagtgttcc tgcacgtaat gttgctcgcc aagaaccgtc tgaggtaaac aagggagcag
    20701 ttagaccatg tttacgcatc aagccagcca ccgatcttag atactccttc tcctcaccat
    20761 aagaaccata ctcattttcc acttggaaca taagtacatt tccaccctgt gcgagttgga
    20821 gcttggccaa tttaggaata agagaagcgt aatattcatc taagtgctgc aagtacaccg
    20881 aatcactcga acgtactcta agctcttcct tcatcaacca agcagggagg ccaccccatt
    20941 cccactccgc acaaatataa ggggaaggac gtacaattgc ataaagccct aattcttgag
    21001 ccaatttcaa aaatcgctca atatccaata taccctcgta acaaaactca ccctttcgag
    21061 gttcatgcat attccaaggg acataggttt caaccgtatt aaaaccaagg gcctttaagt
    21121 tatacaaaga atggtaccaa tcatcaggat ggacacgaaa ataatgaatc gcgcctgata
    21181 aaatcttaaa gggttcaccg tccaaataaa attggtctcc aatataaaat tctttcattt
    21241 cttcctccga tgcaaccgct tacctttcta ttaatatact aacacttatt tgtggttatg
    21301 tccagtactt tttaaaaatt tttttaccat ttcttatcac ctttataaag tgaaaaagta
    21361 tatttttgtg ggtattttag ctatattttt tgattttcat caactaattg agtataataa
    21421 gctgtggaaa ggaaggaaat aagtatgaaa gtaccgaagt accaacttat acaaaacgac
    21481 ttacgccaac agattgtttc tggcaaattt gaaaatggcg acaaatttta cacagaatct
    21541 gaattaacaa aactatttaa tgttagctcc attaccgtta tccgtgcagt aaacgaacta
    21601 gttaaagatg gttacctcgt tcgccaacaa ggtaaaggaa cctttgtatc tcgttcacgc
    21661 aaaggacgtc ttgtagaatt ttctgatatt gagatttttc ctatggataa ggataaggtt
    21721 actgttctct cgtgcgaaaa aggcaataaa cctgatatcc ttgaaaaact aaatcttgac
    21781 aagaatgagt tttactataa aattgtgcgt gtccgcgcag cagaagacac tccatacatc
    21841 ttccacaatt catacatccc tcaacgatat atccagaatc ccgatgctcc actcgagcac
    21901 tatcaatcaa tctatcaacg cttcaaactg gactacaata tccacatgtc cgaggaacca
    21961 tttgtagaaa cgaatgaaat tgtcagccca tgtccaaaag aggttgccac ccatttgaaa
    22021 ttaaaagcga ctgaaccagc tgtactacaa aacaaaacaa ctactaacag tactagcggt
    22081 gaagtgatgg aatatactga aacttacaaa cactggaagt attacaaatt tgaaattaca
    22141 gccaaccatc gctaaaaaaa cgcagactaa c
//
LOCUS       DASGCC010000017        21736 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.017, whole genome shotgun sequence.
ACCESSION   DASGCC010000017 DASGCC010000000
VERSION     DASGCC010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21736
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.017"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(28..1038)
                     /gene="gap"
                     /locus_tag="U1404_000445"
     CDS             complement(28..1038)
                     /gene="gap"
                     /locus_tag="U1404_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008090210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEM5347428.1"
                     /translation="MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPVMLAHL
                     LKYDTTQGRFDGTVEVKDGGFEVNGKFVKVSAEREPGNIDWATDGVDIVLEATGFFAS
                     KEKAEQHIHANGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPM
                     AKALHDAFGVQKGLMTTIHGYTGDQMVLDGPHRGGDLRRARAAAANIVPNSTGAAKAI
                     GLVIPELNGKLDGAAQRVPVPTGSVTELVATLDKKVTAEEVNAAMKAAATESFGYTED
                     QIVSSDIVGISFGSLFDATQTKVIEVDGEQLVKVVSWYDNEMSYTAQLVRTLEYFAKI
                     AK"
     gene            complement(1405..3396)
                     /locus_tag="U1404_000446"
     CDS             complement(1405..3396)
                     /locus_tag="U1404_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEM5347429.1"
                     /translation="MRKKLKFSLVAVACATFLTACGTSNSSAPKAGEATPQTDFHSYI
                     NAQWLKDTKLGAGESQIDNLSQLSEKTQEAIQEMIDQLDMDYSKLQAGSDEKKLIDFY
                     RLAADFDTRNKLGLEPIKPYLEEIKKASTMEELNKILVALYGKNIRNLLHINVTQDIK
                     DSNKNTIYVDPHKLSFPKENYDGTDEFSLKNQKAFKAYLQEVFSLAGESSKEASSKAD
                     LLFNLEKEMAAVQRPKEEANNFEAMYNEKTWDEVKALVPNLPIAELVSELGLQNAPTT
                     VVSEPDALKKLNELYQEKNLDALKALLQYRVIAHYNDYLSSNLIEAKAKYDGVATGAV
                     DTPSQEEVAQAAIDANFSDMIGKVYVKHHFSEESKANILSMVQEIKATYAERIKAVQW
                     MSEETKMRALKKLDTLVVKIGYPDQWKDYSQLAIQSKEEGGSLLSNFDMVKTLELREE
                     MGQFGKPFDKSQFGMPSHTVNAYYSPTNNEIVFPAGILQAPLYDPKASPEENLGGIGA
                     VIGHEISHAFDKAGSQFDEKGNLVNWWKPEDLEKFNKKVQQAADIYSKLEVAPGYYVN
                     GEISTGEIMADLGGLTVAIDIAQKKGYDTKKVFESYGKAWREVTTKEFAIANISDEHP
                     PAKYRVNNIVNQIDQFYTDFNVKEGDPMYVKPEDRLRVW"
     gene            complement(4378..6459)
                     /gene="fusA"
                     /locus_tag="U1404_000447"
     CDS             complement(4378..6459)
                     /gene="fusA"
                     /locus_tag="U1404_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEM5347430.1"
                     /translation="MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWNNHRVNIIDTPGHVDFTIEVQRSLRVLDGA
                     VTVLDSQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFLYSVSTLHERLQANAH
                     PIQLPIGSEDEFRGIIDLIKMKAEIYTNDLGTDILEEDIPAEYLEQAEEYREKLVEAV
                     AETDEELMMKYLEGEEITNEELKAAIRKATINVEFFPVLCGSAFKNKGVQLMLDAVID
                     YLPSPLDIPAIKGVNPDTDAEEERHASDEEPFAALAFKIMTDPFVGRLTFFRVYSGVL
                     NSGSYVLNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVGLKDTTTGDSLTDEK
                     AKIILESIHVPEPVIQLMVEPKSKADQDKMGIALSKLAEEDPTFRVETNVETGETVIS
                     GMGELHLDVLVDRMRREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGGKGQFGDV
                     WIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLVESMANGVLAGYPIVDVKAKLY
                     DGSYHDVDSSETAFKVAASLALKEAAKSAQPTILEPMMLVTITAPEDNLGDVMGHVTA
                     RRGRVDGMEARGNTQIVRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYEDVPKSVQ
                     DEIIKKNGGNA"
     gene            complement(6901..7371)
                     /gene="rpsG"
                     /locus_tag="U1404_000448"
     CDS             complement(6901..7371)
                     /gene="rpsG"
                     /locus_tag="U1404_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011285383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEM5347431.1"
                     /translation="MSRKNQAPKREVLPDPLYNSKLVTRLINRVMLDGKRGTAASIVY
                     GAFDQIKEATGNDALEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTTLGLR
                     WLVTIARNRGEHTMIDRLAKEIMDAANNTGAAVKKREDTHKMAEANRAFAHFRW"
     gene            complement(7388..7801)
                     /gene="rpsL"
                     /locus_tag="U1404_000449"
     CDS             complement(7388..7801)
                     /gene="rpsL"
                     /locus_tag="U1404_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEM5347432.1"
                     /translation="MPTINQLVRKPRKSKVEKSKSPALNVGYNSRKKVQTNVSSPQKR
                     GVATRVGTMTPKKPNSALRKFARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKD
                     LPGVRYHIVRGALDTAGVNDRKQGRSKYGTKRPKG"
     gene            complement(8033..9655)
                     /gene="groL"
                     /locus_tag="U1404_000450"
     CDS             complement(8033..9655)
                     /gene="groL"
                     /locus_tag="U1404_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940029.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEM5347433.1"
                     /translation="MAKEIKFAADARESMVRGVDILADTVKVTLGPKGRNVVLEKAYG
                     SPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREG
                     LKNVTAGANPIGIRRGIEAAVATAVESLKAQASPVSNKAEIAQVAAVSSRSEKVGEYI
                     SEAMERVGTDGVITIEESRGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELENPFI
                     LITDKKISHIQDILPLLESILQTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGTVITEDLGLDLKDATIEALGQAAKVVVDKDGTTIVEGV
                     GNAEAIANRVAVIKSQIEGTTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKL
                     RIEDALNATRAAVEEGIVAGGGTALVNVIDSVAKLELKGDDETGRNIVLRALEEPVRQ
                     IAYNAGYEGSVIIDKLKNSELGTGFNAATGEWVNMMDAGIIDPVKVTRSALQNAASVA
                     SLILTTEAVVANKPEPAAPAMPQGMDGMGMGY"
     gene            complement(9667..9948)
                     /gene="groES"
                     /locus_tag="U1404_000451"
     CDS             complement(9667..9948)
                     /gene="groES"
                     /locus_tag="U1404_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEM5347434.1"
                     /translation="MLKPLGDRIVVKIEEKEQTVGGFVLAGASQEKTKEASVLAIGQG
                     IRTLNGDLVAPAVAVGDTVLIDAHAGLEVKDGEQTVHIIREADILAIVE"
     gene            10146..10391
                     /locus_tag="U1404_000452"
     CDS             10146..10391
                     /locus_tag="U1404_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347435.1"
                     /translation="MKFFRELKTDYLESRFSVHESFAEWFLKRKLGFLGKIMFDYLLW
                     LVWLLLFSHPHYIIFFFYGVLLLSLIIMLIEWWKYRK"
     gene            complement(10505..10900)
                     /locus_tag="U1404_000453"
     CDS             complement(10505..10900)
                     /locus_tag="U1404_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000282448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM5347436.1"
                     /translation="MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGER
                     EADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTRKYEKDGSNHYVTEILGQSFQLL
                     ESRAQRAMRENNAGDDLADLVLEEEELPF"
     gene            10955..11734
                     /locus_tag="U1404_000454"
     CDS             10955..11734
                     /locus_tag="U1404_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2785 domain-containing protein"
                     /protein_id="HEM5347437.1"
                     /translation="MKEFLMEKIHTSQPYTNAELAWLLENISHPDPAIRDELVYASFC
                     HIFLEGLITREQAQSLLQFSQETNHLSLESSTLKRSFTCLLYCLLLSVDNERDSVYFA
                     FLSTNDRELLFQQALDYLAIENDWSGYDEKLGWIHTAAHGADFLLATSCHDQFPAEKS
                     KEVWQTIVTCLTRQSKVFSAGEEIRLAQIPVYLLLNEKVTSKELTEWISKLDFPNQEP
                     VDYFRWLNLQHFLSSLYFQLRSHQASTEEIEQAIEGKIEPA"
     gene            complement(11768..12391)
                     /locus_tag="U1404_000455"
     CDS             complement(11768..12391)
                     /locus_tag="U1404_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011284429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 and tRNA-binding domain-containing
                     protein"
                     /protein_id="HEM5347438.1"
                     /translation="MIFTYNKEHVGDVLMVIVAEDKGQPVQFERKGQVARVFLEETGK
                     TVAWNIFEASSLVELAGNGQVFMTDEQVATLNAELAKEGFTESLVNDNSPKFVVGQIV
                     ELVPHPDSYHLNICQVNVGDKTVQIVAGAPNAAQGLKTIVALPGAMMPSGSLIFPGKL
                     RGEDSFGMMCSPRELALPNAPQVRGIIELDDSAVVGEALDPAKHWKG"
     gene            complement(12410..13366)
                     /locus_tag="U1404_000456"
     CDS             complement(12410..13366)
                     /locus_tag="U1404_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1002 domain-containing protein"
                     /protein_id="HEM5347439.1"
                     /translation="MKKSLGKILLAPVVLGLSLSLAPLVQAEIQTDVINEKWGKPTLV
                     YGGGLSDAQATEVNNLFGISDVNNVSRQVVVGTDMDQYLGTSGADTASLYSSVLVQKQ
                     DAGKGVVVDIKTPQNITLITETQYANAAITAGATDVLIDVAAPIQVTGESALTGVYKA
                     LAANGDTVDTARTEVAQQELTTVNEVATAHAGDEQFDSSALDKAVAEIKTALADYKKS
                     NGQVASEADINTIINDVLTQNGLENVITADEISKLVTFAKAYQETSAIDSAEVAAQLN
                     QFKQQAEQQISEAYKNLQDSGILEKIGAFFENLWKGLTGLFA"
     gene            complement(13411..13731)
                     /locus_tag="U1404_000457"
     CDS             complement(13411..13731)
                     /locus_tag="U1404_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM5347440.1"
                     /translation="MIFPTNLEEVAGLIEDGKPTVFLFVTTWCGDCHYIKPHLSAIEE
                     AFPDFRFVQLDRDDFMPLAQEWAILGIPSLVVLENGQEIGRFVDKNRKTKEEIMNFLS
                     GLGR"
     gene            complement(13728..14012)
                     /locus_tag="U1404_000458"
     CDS             complement(13728..14012)
                     /locus_tag="U1404_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4651 domain-containing protein"
                     /protein_id="HEM5347441.1"
                     /translation="MKKKRTALLAGLLGAGVLTASAQFYRKVQEDRKKAQALQEVRDF
                     FANVGEIATVYVDETASTQDSLVGGVVMEAGQVFLFENAQGSIQYREEER"
     gene            14225..15286
                     /gene="pepA"
                     /locus_tag="U1404_000459"
     CDS             14225..15286
                     /gene="pepA"
                     /locus_tag="U1404_000459"
                     /EC_number="3.4.11.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl aminopeptidase"
                     /protein_id="HEM5347442.1"
                     /translation="MTLFEKIKEVTELQSLPGFEGQVRNHIRQKITPHVDRIETDGLG
                     GIFGIKDTTVENAPRILVAAHMDEVGFMVSQIKPDGTFRVVELGGWNPLVVSSQAFTL
                     QLQDGRTIPAISGSIPPHLTRGGNAPGVPAIADIIFDAGFTNYDEAWAFGVRPGDVLI
                     PKNETILTANGKNVISKAWDNRFGVLMVTELLESLSGQALPNQLIAGANVQEEVGLRG
                     AHASTTKFNPDIFLAVDCSPAGDIYGDQGKIGDGTLLRFYDPGHIMLKNMKDFLLTTA
                     EEAGVKFQYYCGKGGTDAGAAHLKNHGVPSTTIGVCARYIHSHQTLYSMDDFLEAQAF
                     LQAIVKKLDRSTVDLIKNY"
     gene            complement(15331..16587)
                     /locus_tag="U1404_000460"
     CDS             complement(15331..16587)
                     /locus_tag="U1404_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM5347443.1"
                     /translation="MNYLEMRQWLSSRPASDLEHGVARVNWILERLDNPQLQVSTIHF
                     VGTNGKGSTLNALQSILQSSDYTVGRFTSPSIIDFREQIVFEQEMISEEDFVRIVTDL
                     QPLIEDLDQTAGLDAISEFEIVVVAMFVYFAHYQRPDILLVEAGMGGLQDATNVLAPL
                     AVVCPSIGLDHQAFLGETHAAIARHKVAVLRERVPLLYATDQPEVVAVFEDHASQLQS
                     PTYAVGREIILENSRAGFAVSSPLGRVEELKVLMQGRHQEVNAALAVTTAQLLSPDFP
                     KITNETIRQGLSQAIWPGRLELMKPRLMIDGAHNNESIAVLTELLEEKYADRDIEILF
                     AAINTKPVDQMLSQLSQFGPVSVTTFDDFRAVQLEDYPSGYERVQTYQEWLEQADLDN
                     PQKLYLITGSLYFITYVRKYILEELV"
     gene            complement(16641..17192)
                     /locus_tag="U1404_000461"
     CDS             complement(16641..17192)
                     /locus_tag="U1404_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate family ECF transporter S component"
                     /protein_id="HEM5347444.1"
                     /translation="MEKKIPKLTVQLLAAIAMTLALVMIVENYFSIRISDTLQVQFTF
                     VPNTILGAIAGPVWAAVFAAISDPVFVLFSGQTVLFTWILIEAVSAFIYGWFFYRKPL
                     DTKNKADWLYVAGVVVLIQVVISFIMTPIALHFHFGTPWIVLYSSRLIKAVFEIPLRI
                     VVTMLVLPSLQKIPELAKLMGIK"
     gene            complement(17507..18694)
                     /locus_tag="U1404_000462"
     CDS             complement(17507..18694)
                     /locus_tag="U1404_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM5347445.1"
                     /translation="MSKTIAINAGSSSLKWQLYQMPEETVLAAGIVERIGLNDSISTV
                     KYDGKKESEVLDIPNHTVAVKILLEDLLKHNIIVAYEEITGIGHRVVAGGEVFKESAV
                     IGPKEVEQIEELSALAPLHNPAHVAAMRAFEEVLPEVLNVAVFDTAFHTTMPKHAYLY
                     PIPQKYYTDHKVRKYGAHGTSHYYVAHEAAKVLGRPIEELKLITAHIGNGVSITANYH
                     GQSVDTSMGFTPLAGPMMGTRSGDIDPAIIPYLIANVDELKDAADVVNMLNKQSGLLG
                     VSGYSSDMRDIESGLEAKNPDAVLAYNIFIDRIKKFIGQYFAVLNGADALVFTAGMGE
                     NAPLMRNDVVEGLSWFGVEIDPAKNVRGANGDISTPESKVRVLVIPTDEELVIAREVE
                     RLK"
     gene            complement(18744..19697)
                     /locus_tag="U1404_000463"
     CDS             complement(18744..19697)
                     /locus_tag="U1404_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5347446.1"
                     /translation="MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQH
                     ETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV
                     DQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
                     ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSL
                     KYLEKDGFAILLAPNDLLTSPQSDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFV
                     LQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI"
     gene            complement(19754..20164)
                     /locus_tag="U1404_000464"
     CDS             complement(19754..20164)
                     /locus_tag="U1404_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGG"
                     /protein_id="HEM5347447.1"
                     /translation="MLLKKKVKAGILLYALLMLAVFSLLLQFYLHRQEAESRLVQVAR
                     QETTAYIMAQMVLDEVEQDLQVEKIVTGAVVNEKEANLTTGSKQKENRGRVSFQEGQA
                     RYQLKGDQLLVTVELTSDGLYTYQFPLGLSSEGG"
     gene            complement(20142..20576)
                     /locus_tag="U1404_000465"
     CDS             complement(20142..20576)
                     /locus_tag="U1404_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGF"
                     /protein_id="HEM5347448.1"
                     /translation="MLKSKIPAFTLLECLVALIILSGSLLVFEGLSKLLVQEAHYQGQ
                     TVQKEWLVFSSQLRLEWDQSDLVKVENGKVYVNKVEQALAFGKSRSDDFRKTNDRGQG
                     YQPMLYQVDSAAIYQENQLVRIDFSFKNGEERTFIYAFKEKS"
     gene            complement(20563..20856)
                     /locus_tag="U1404_000466"
     CDS             complement(20563..20856)
                     /locus_tag="U1404_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002282213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HEM5347449.1"
                     /translation="MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAW
                     ELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTADKIIVFREGKEVLSVVKK"
     gene            complement(20828..21235)
                     /locus_tag="U1404_000467"
     CDS             complement(20828..21235)
                     /locus_tag="U1404_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM5347450.1"
                     /translation="MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIF
                     LWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQAVQVPRNIEVLEGKTITLEEDG
                     GNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE"
     gene            complement(21216..21497)
                     /locus_tag="U1404_000468"
     CDS             complement(21216..21497)
                     /locus_tag="U1404_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM5347451.1"
                     /translation="MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSKQKDAVQE
                     KGNAAVVKVVESQMELYELEHDEEATVEDLQQAGYITEKQAKQYATAKK"
     gene            complement(21499..>21736)
                     /locus_tag="U1404_000469"
     CDS             complement(21499..>21736)
                     /locus_tag="U1404_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM5347452.1"
                     /translation="KTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNR
                     AMQLIQPLVFLFVALMVVLIYAAMLLPIYQNMEL"
BASE COUNT         6000 a         5077 c         4253 g         6406 t
ORIGIN      
        1 cgaagcctct tcgattttca ctaaggatta tttagcgatt tttgcgaagt actcaagagt
       61 acgaacaagt tgtgcagtgt aagacatttc gttgtcgtac catgaaacaa ctttaaccaa
      121 ttgctcgcca tcaacttcga taactttagt ttgagttgca tcaaacaatg aaccgaatga
      181 gatacctacg atatctgaag atacgatttg gtcttcagtg taaccaaatg attcagtagc
      241 agcagctttc atagcagcat ttacttcttc agcagttact ttcttgtcaa gagttgcaac
      301 caattcagtt acagaacctg ttggaactgg aacacgttgt gcagcaccgt caagtttacc
      361 gttcaattct gggattacca agccgatagc tttagcagca ccagttgagt taggaacgat
      421 gtttgcagca gcagcacgtg cacgacgaag gtcacctcca cggtgtggtc cgtcaagaac
      481 catttggtca ccagtgtaac cgtggattgt agtcatcaaa cctttttgaa cgccaaatgc
      541 atcgtgaaga gctttagcca ttggtgccaa acagtttgta gtacatgaag cacctgagat
      601 aactgtttca gtaccatcaa ggatgtcgtg gttagtgttg aaaacaacag tcttaacatc
      661 gttaccacca ggagcagtga taacaacttt tttagcaccg ttagcgtgga tgtgttgctc
      721 agctttttct ttagaagcaa agaaacctgt agcttccaaa acgatatcta cgccatcagt
      781 agcccagtcg atgtttcctg gctcacgctc agcagaaact ttaacgaatt taccgttaac
      841 ttcgaaacca ccgtctttaa cttcaacagt accgtcgaaa cgaccttgag ttgtatcata
      901 tttcaacaag tgtgcaagca ttactggatc tgtaaggtcg ttgatacgag taacttcaac
      961 accttctacg ttttggatac gacggaaagc aagacgaccg atacgtccga aaccgttaat
     1021 accaacttta actaccatga atgatttcct ccttatgaaa atcgagttct ttattttaaa
     1081 aggcaagcct tttaatcctt ttgtgaaaat attaacttgt aagcctacaa gcatcttttc
     1141 aacgttttta ttatataact atttaccgaa aattgcaact gcttaccggt tcatcttatg
     1201 taaaaaatag aaggccaaaa aataaaagtt aaaaatcata gccatgcgtt ttctcgggtg
     1261 gttatgactg gttaaatact taacttaata gcattgccat acctcgacac attttttacc
     1321 gattcttggt ttaccgctac ttctattttt tacctaaaaa ggtgtctacc gcccattttg
     1381 gaccgcagac acctctataa tcttttacca cactcgtagg cggtcttctg gtttcacata
     1441 cattggatcc ccttctttga cattgaagtc tgtatagaat tgatcaattt ggttgacaat
     1501 gttgttaacc cgatatttag ctggtggatg ttcgtcgctg atgttggcaa tagcaaattc
     1561 tttggtggtg acttcacgcc atgctttacc ataagactcg aagactttct tcgtatcgta
     1621 gccttttttc tgagcaatat caatggcaac cgttaaacca ccgagatccg ccatgatttc
     1681 accggttgaa atttcgccat tgacatagta gcccggagcc acttccaatt tagaatagat
     1741 atctgctgcc tgttgaacct ttttattaaa tttttcaagg tcttctggtt tccaccagtt
     1801 gacaaggttc cccttttcat caaattgaga accagcctta tcaaaggcat gggaaatttc
     1861 atgaccgata acagccccga ttccacctag attttcttcg ggactagctt ttggatcgta
     1921 gagaggagcc tgtaaaatcc ccgctggaaa gacaatttcg ttgttagttg ggctgtaata
     1981 ggcattcacc gtgtgagaag gcatgccgaa ctgcgactta tcaaaaggct tgccaaattg
     2041 ccccatctct tcacgcaatt caagtgtttt taccatatcg aagttagaaa gaagacttcc
     2101 cccttcttcc ttggattgga tagcaagttg tgagtaatcc ttccactggt ctggatagcc
     2161 gattttaaca accaatgtat ctagtttttt caaggcccgc atcttggttt cttcagacat
     2221 ccactgcact gctttgattc gctctgcata agtcgcttta atctcttgaa ccatagatag
     2281 gatattagcc ttggattctt ctgaaaaatg gtgtttaacg taaactttgc caatcatatc
     2341 ggagaaattt gcatcaatgg ccgcttgagc aacttcttcc tgactcggag tatctaccgc
     2401 accagttgct acgccgtcgt atttcgcttt tgcctcgatt aaattgcttg acagataatc
     2461 attgtaatgg gcaatcacac gatattggag cagggcttta agagcgtcta aattcttttc
     2521 ttgatagagt tcatttaatt tttttagagc atctggttct gatacgactg tcgttggagc
     2581 attctgaagt cctaactcag aaaccaactc agcaatcggt aggttgggaa ccagtgcttt
     2641 gacctcatcc caagtcttct cgttatacat ggcttcaaag ttattggctt cttcttttgg
     2701 ccgttgcact gcagccatct ctttttccaa attaaagagg aggtctgcct tagaagaggc
     2761 ttcttttgag gattctcctg ccaagctaaa cacttcctgc agataggctt taaaggcttt
     2821 ttggtttttc agtgaaaatt catctgtgcc atcataattt tcttttggaa aacttaactt
     2881 gtgagggtca acgtagatgg tgtttttgtt actgtctttt atatcttgag taacgtttat
     2941 atgaagcaaa ttgcggatgt ttttgccgta tagggctacc agaatcttgt tgagttcttc
     3001 catggtagag gcttttttaa tctcctctaa ataaggcttg ataggctcta accccaattt
     3061 gttgcgagta tcaaaatcgg ctgccaatcg gtaaaaatca ataagttttt tctcatcact
     3121 accagcttgc agcttggaat agtccatatc cagctggtca atcatctcct ggattgcttc
     3181 ttgcgttttc tcagagagtt gactcagatt atctatttgc gattcaccgg cacctaattt
     3241 tgtatctttc aaccattgcg cattgatata agaatgaaaa tccgtctgtg gtgttgcttc
     3301 acctgctttg ggagccgagg aattacttgt accacaggct gtcaaaaatg tcgcacaggc
     3361 gactgctact aatgaaaatt ttaatttttt tctcatgatt tctgtccttt ctttttattg
     3421 ttaatgtgct tagtaccact atttcatcac catacaagca tcctccttta gtaattagcg
     3481 gtcctaaact actctttcat cgatctacct tataaggatt ctaacattta tatctgcttt
     3541 tcttctgtag cctatctatt aattctctta ttttttgtaa ccattcccaa acaaagtaat
     3601 tctaaatgat ttaaaacatt tattttagca aattgagtga gagtaggcaa gaactcgaac
     3661 ggtcaaaaga gttcagcaac aattcctaat ttcaagttat taagctaaaa caatctattc
     3721 acagaccgtt ttaatccgtt tatttcacag tagccagacc tagaagtcac tgttgagttc
     3781 atcggcaaca ggaatcttat acccaatgaa atcccaaaat agcaaaccct gatcttttgt
     3841 tagccatcca cacctaaatt agggtatttt tttataaatt gtagctttct cattgtatat
     3901 ttccaaaaag gatctgacgg atacctattt tttagtcgtt tagtttgttt ttagcactca
     3961 cttcaaaggt tcagggaacc tttgaaggct agagataggg cgaagcaagt tcgcctcaat
     4021 agctgcaggt tgctagaaca gcctttaggc tgttctaagt tagaaataag acttgcctcg
     4081 cgaatcacct ctgtaaagta cggcaaagcg agttcaaata ctccagtgaa gtgttcgaag
     4141 ttgaaaatag ggaaacgaag tttcatcgct cgtcgaagta atcaaagata aactactgat
     4201 actcaataaa aatcaaaagt agcctaggaa acgaagccga agatagaact ggagttcatc
     4261 aaggcaagtt gacaacggat aattttgatt tccgaagagt atgagtatca cgctcagatg
     4321 tgtgacatat ccgtcgtacc aaaaaacacc tacccgaagg taggtgtaga taggcaatta
     4381 tgcattgcca ccgtttttct taatgatttc atcttgtaca gattttggta catcttcgta
     4441 gtggtcaaat accatcatga aggtaccgcg accttgagtt gctgaacgaa gaacagttgc
     4501 gtaaccgaac atttcagcaa gtggcacata agcacgaacg atttgtgtgt taccacgagc
     4561 ttccataccg tcaacgcgac cacgacgtgc agtaacgtga cccataacgt cacctaggtt
     4621 atcttctggt gcagtgatgg ttacaagcat cattggctca aggatagttg gttgagctga
     4681 tttagcagct tctttaaggg caagagatgc tgccactttg aaggctgttt cagatgagtc
     4741 gacatcgtgg tatgaaccat cgtaaagctt cgctttaacg tcaacgattg ggtaaccagc
     4801 aagaacaccg ttcgccatag attctacgag acctttttca accgctggga tgaattcacg
     4861 tggaaccaca ccaccgacga tagcgttctc gaactcgaaa cctttacctt cttcgtttgg
     4921 tgtgaattcg atccaaacgt caccgaattg acctttacca ccagactggc gtttgaagaa
     4981 accacgagct tgtgtagaag cacggaatgt ttcacggtat gatacttgag gagcacctac
     5041 gtttgcttca accttgaatt cacgacgcat acggtcaaca aggacatcca agtgcaactc
     5101 acccatacca gagataactg tttcaccagt ttcaacgttt gtttcaacgc ggaatgttgg
     5161 atcttcttca gccaatttag aaagggcaat acccatcttg tcttggtcag ctttagactt
     5221 aggctcaacc atcaattgga taactggttc tggaacgtgg attgactcaa ggatgatttt
     5281 tgctttttca tctgtcaatg agtcaccagt tgtagtatct ttcaaaccaa ccgcagcggc
     5341 gatgtcacca gcgtaaacag tttcaatttc ttggcggctg tttgcgtgca tttgaaggat
     5401 acgtccgata cgctcacgtt tacctttaga agtgttcaat acgtatgaac cgctgttaag
     5461 gacacctgag taaacacgga agaatgtcaa acgacctacg aatgggtcag tcataatctt
     5521 gaaggcaaga gctgcaaatg gctcttcatc tgatgcatga cgctcttctt cagcatctgt
     5581 atctgggtta acacctttaa tagcagggat gtcaagtggg cttggaaggt agtcgataac
     5641 cgcatcaagc atcaactgaa cacctttgtt tttgaaggct gaaccacaca atactgggaa
     5701 gaattcaacg ttgatagttg ctttacggat agcagctttc aattcttcgt ttgtgatttc
     5761 ttcaccttca aggtatttca tcatcaattc ttcatcagtt tcagcaactg cttcaaccaa
     5821 tttttcacgg tattcttcag cttgttcaag gtattcagct ggaatatctt cttcaagaat
     5881 atctgtacca aggtcgttag tatagatttc agctttcatc ttgatcaagt cgatgatacc
     5941 acggaactca tcttctgagc cgattggcaa ttggattgga tgagcatttg cttgaagacg
     6001 ctcatgaagt gtgcttactg aataaaggaa gtcagcaccg attttatcca ttttgttagc
     6061 gaatacgata cgtggaacac cgtattcagt tgcttgacgc catactgttt cagtttgtgg
     6121 ctcaacacct gattgtgagt caagaacggt taccgcacca tcaagaacgc gaagtgaacg
     6181 ttgtacttcg attgtaaagt ccacgtgtcc tggtgtgtcg atgatgttta cacggtggtt
     6241 gttccattga gctgttgtcg cagcagatgt gatagtgata ccacgctctt gctcttgctc
     6301 catccagtcc atttgcgatg caccttcgtg agtttcaccg attttgtgga ttttaccagt
     6361 gtagtaaaga atacgctcag ttgtcgttgt tttacccgcg tcaacgtgcg ccatgatacc
     6421 gatattacga gttttttcta atgaaaattc gcgtgccatg aggtttgttc tcctatattt
     6481 ttagatttct attctgatta taccatattt taagaaaagc gagtgggcaa atcccacccg
     6541 cttaagttct tactaatggt gtgaagtgga cgaggcaagc ctcaatccga tttgtgatgg
     6601 ttgaacgata aattgctacc ataatctcaa ttgatttatg tagaactgac ttaacgtcct
     6661 cacatcctaa ttgaactcgg gctacaactc actgacaaaa agatgaacct catcgattgc
     6721 acagcaatct gcttcgcttc cctattttgt ctaggagttg cttgacgccc tcgtatctta
     6781 atcttagttg aattttagct acaaatgtct gccaaaaaga taaaatctcc tagaaactga
     6841 agtttctgcg tcaattttcc tattttggct agcatttgtt taacgctaaa atatcctatc
     6901 ttaccagcgg aagtgtgcga atgcgcggtt tgcttctgcc attttgtgag tatcttcacg
     6961 tttcttaaca gctgcacctg tgttgtttgc tgcatccatg atttctttcg caaggcgatc
     7021 gatcatagtg tgctcaccac ggttacgagc gattgttacc aaccaacgaa gaccaagtgt
     7081 tgtacgacgc tctggacgaa cttcaactgg aacttggtag ttagaaccac cgacacgacg
     7141 tgcacgtact tcaagtacag gcatgatgtt ttccattgct gtttcaaata cttcaagtgc
     7201 atcgttacca gttgcttctt tgatttgatc aaaggcaccg taaacgattg atgcagcagt
     7261 accacgttta ccgtccaaca taacacggtt aatcaaacga gttaccaatt ttgagttata
     7321 caatggatct ggcaatactt cgcgcttagg cgcttgattt ttacgactca tttatatttc
     7381 ccctttctta gccttttgga cgtttagtac cgtatttaga acggccttgc ttacgatcgt
     7441 taacacctgc tgtatcaagt gcaccacgaa cgatatggta acgtacccct ggaaggtctt
     7501 ttacacgtcc accacgaaga agaacaacac tgtgctcttg caagttgtga ccgatacctg
     7561 ggatgtaagc agtaacctcg ataaggttgc tcaaacgtac acgagcaaat ttacgaaggg
     7621 ctgagttagg ttttttaggt gtcatagttc cgacacgagt tgcaacaccg cgtttttgtg
     7681 gtgatgaaac gtttgtttga acttttttac ggctgttgta accaacgttc aaagctggtg
     7741 atttagattt ttctacttta gacttacgtg gtttacgtac caactggtta attgtaggca
     7801 tctacattct cctgtatata ttttttattt ttggtgatag ggcattggtg acaaccccta
     7861 tctgtgtgta cttttgcaac atttgtcagc acgtccctgt acactcttga gagaccaaaa
     7921 gtaaaaagta ccgtctaata tagtaccaca ttccaaagcc attgtcaaat agatatgttt
     7981 gaaattttca agaaaaaaac acagccaatc agctgtgtca ttttgctatt ccttagtaac
     8041 ccatacccat tccgtccata ccttgtggca tagctggagc ggctggttct ggcttgttgg
     8101 caacgactgc ttctgtcgtc aaaatcaagc tggctacaga agctgcgttt tgaagggccg
     8161 aacgagtcac cttaacaggg tcaataatac ctgcatccat catattcacc cattcacctg
     8221 tcgcagcatt aaagcctgtt ccaagctcag aattcttcaa tttatcaatg ataactgatc
     8281 cctcataacc ggcgttatag gcaatctgac gtactggttc ttccaaggca cgaaggacaa
     8341 tattgcgtcc tgtttcatcg tcgcctttca actccaattt cgctacgcta tcgataacat
     8401 tgacaagggc tgtaccacca ccggcaacga tgccttcttc aactgcggca cgtgttgcgt
     8461 tgagggcatc ttcgatacgg agtttcattt ctttcaactc agtctcagta gcggcaccga
     8521 ctttgataac agcaacaccg ccagacaatt tagccaaacg ctcttgtaat ttttcacggt
     8581 caaattctga agttgttccc tcaatttgtg acttgataac agccacacgg ttggcaatgg
     8641 cttcagcatt gccaacacct tcaacaatag ttgtaccatc cttgtcaacc acaaccttgg
     8701 cagcttgacc aagtgcttca atagtcgcat ctttcaagtc caaaccaaga tcttctgtaa
     8761 tcactgtccc acctgtcaag atcgcgatgt cttccaacat agctttacga cggtcgccaa
     8821 agcctggcgc cttaacagca acaacgttga acgtaccacg aatcttattg agaacaaggg
     8881 taggaagtgc ttcaccatcc acatcgtcag caataatcaa aagcggacga ctagtctgaa
     8941 ggatgctttc caaaagtggc aaaatatctt ggatgtgaga aattttctta tcagtaatca
     9001 agataaatgg attttcaagc tccgcaacca tcttctcatt atctgttacc atgtattgtg
     9061 acagataacc acggtcgaat tgcatgcctt ctaccacatc caactcagtt tccataccgc
     9121 gagattcttc gatagtgatt acgccgtctg ttcccacgcg ctccatagct tctgaaatgt
     9181 actcaccaac tttttcagaa cgtgaagata ccgctgcaac ttgagcaatt tcagctttat
     9241 tggatacagg acttgcttgt gctttcaagg attcaaccgc agtcgcaact gctgcttcaa
     9301 tcccgcgacg gataccaatt gggttggcac ctgcagttac gtttttcaat ccttcacgaa
     9361 caatagcctg agtcaacaca gtggccgttg ttgtaccgtc accagcgatg tcattggttt
     9421 ttgatgccac ttcagatacc aacttggcac ccatattttc aaagtggtct tccaattcga
     9481 tttctttggc aatggttaca ccatcatttg taatgagtgg tgagccataa gctttttcca
     9541 agacaacatt gcgacctttt ggacccaagg ttactttgac tgtatcagcc aaaatatcaa
     9601 caccacggac catgctttca cgtgcatctg ctgcaaattt gatttctttt gccattttcc
     9661 tacctcttat tctacaattg ccaaaatgtc tgcttcacgg atgatgtgaa cggtctgttc
     9721 tccgtctttg acttccaatc ctgcgtgagc atcaatcaaa acagtatctc caactgctac
     9781 cgctggggca accaagtcac cattcaaggt acgaatccct tgaccgatcg ctaggacact
     9841 tgcttctttt gtcttttctt gacttgcacc tgcaaggaca aagccaccaa ctgtttgttc
     9901 tttttcttca atttttacga cgatacgatc gcccaatggt ttcaacatct tattacctcc
     9961 tggtcttttt agcactctac actcgcgagt gctaactcac atttcctatt gtatcacttg
    10021 gtcaaaaata gtcaagaaaa ttctttttta atttacctaa aatccgtcta gggactgagg
    10081 aaacgcaacc tgttaattat ggcaaaacta tgctatacta ttattaaaaa gttaaggggg
    10141 gatttatgaa attttttaga gagctaaaaa cagattacct agaaagccgt ttttccgttc
    10201 acgaaagttt tgcagaatgg tttttaaaac gtaaattagg ctttttgggg aaaataatgt
    10261 tcgactatct actctggcta gtctggttgc ttctcttttc ccaccctcat tacatcatct
    10321 ttttcttcta cggagttctc ctactttctc taattatcat gctgatagaa tggtggaaat
    10381 atagaaaata agtagcaaaa aacgccaact ttcgtcagcg tttttaagga gatatgaaaa
    10441 atatttagga ttgactatag tatagcctat ttttcaatac gctccatcgg tcttgggact
    10501 gatattaaaa cggtaattcc tcctcttcta agaccaaatc agctagatca tcgccagcat
    10561 tattttcacg catagcacgt tgggcccgac tttcgagcag ctggaaggat tgtcctaaga
    10621 tttctgtcac atagtggttg ctgccgtctt tttcgtattt tcgcgttcgc aattcaccat
    10681 caatggaaat tagactacct ttattaccat aggaaacaag cgtttccgcc agtttgcccc
    10741 agaaaatgac attaagaaaa tctgcttcac gttcgccatt ttccgtctta aaacggcggt
    10801 tgactgcgac agtaacacgg gtcagatttt tgccgttagg ggtttgagtg agttcaggtt
    10861 gggccgtcaa gcgaccgatt aaaataactt tattatacat tttatatcct cctacttatt
    10921 tattcgtaga aggattagaa aaggagcgaa aattatgaaa gaatttttga tggaaaagat
    10981 acacacctcc caaccatata ctaatgccga actagcttgg ttgctggaaa acatcagtca
    11041 tcctgatcct gctatacgcg acgaactggt ttatgctagt ttttgccaca tctttttgga
    11101 gggcttaatc acaagggagc aagcacagtc gctactacaa ttctctcaag aaaccaatca
    11161 cctttcccta gaaagttcca cactaaaacg aagttttact tgcttgctct actgtctttt
    11221 gctatctgtt gataatgagc gagattctgt gtactttgca tttttaagca ctaacgaccg
    11281 tgagctactc ttccagcagg ccttggatta tttggcgatt gaaaatgact ggtctggcta
    11341 cgatgaaaaa ctcggctgga tccacaccgc tgcccacgga gcagattttc ttctggccac
    11401 aagctgtcat gatcaatttc ccgctgaaaa aagcaaagaa gtctggcaaa ctattgtcac
    11461 ttgtctaact agacaaagta aagttttctc agctggcgag gaaatccgtc tggcacaaat
    11521 tcctgtatat ttactactga atgaaaaagt aaccagcaaa gagttgacag aatggattag
    11581 caagctggac tttccaaatc aagaaccagt agactacttc cggtggctca atctccaaca
    11641 ttttctgtct agtctttact tccaacttag gtcacatcaa gcatcgaccg aagaaatcga
    11701 acaggctatt gaaggaaaaa ttgaaccagc ataaaagaat tggccaaagc gaccaattct
    11761 tctttttcta tcccttccag tgtttagctg gatcaagtgc ttctccgact actgcggagt
    11821 cgtccaattc gataatgcca cggacttgtg gtgcgtttgg cagagccaat tcacgcggac
    11881 tacacatcat accaaagcta tcttcaccac gcaatttccc tgggaaaatc aggctaccgc
    11941 tcggcatcat tgcccccgga agagccacaa tagttttcaa tccttgggca gcatttggtg
    12001 ctccagctac gatttgaacg gttttgtcac caacattgac ctgacagata ttgaggtggt
    12061 agctgtctgg atgcggaacc agttccacaa tctgaccgac aacgaatttc ggactattgt
    12121 cgttgactaa gctttcagta aaaccttcct tagccaattc agcattcaag gtcgcaactt
    12181 gctcgtctgt catgaaaacc tgaccatttc cagcaagctc aaccaaactt gatgcttcaa
    12241 agatattcca ggctactgtt tttcctgttt cctctaggaa aacacgcgcc acttgaccct
    12301 tgcgttcaaa ctgaacaggc tgacccttgt cttcagccac aatcaccata agaacatcgc
    12361 cgacgtgttc cttattatat gtaaaaatca tttctttttc atttctcctt tatgcaaata
    12421 gaccggtcaa gcctttccaa agattttcaa agaaggcacc gattttttct aaaatccctg
    12481 aatcttgtag attcttatag gcttctgaaa tttgttgctc cgcctgttgc ttgaactggt
    12541 tgagttgggc agcaacctca gccgaatcaa tagcagaggt ttcctgataa gctttggcaa
    12601 atgtgactag cttagaaatt tcatctgctg tgatgacatt ttctaaaccg ttttgggtca
    12661 aaacatcatt gatgatggtg ttgatgtcag cctcagaagc cacctgacca ttggactttt
    12721 tgtagtcggc aagagcagtc ttgatttccg ccactgcctt atccaaagca gagctgtcaa
    12781 attgttcatc accagcatgg gctgtcgcta cttcattaac agttgttaat tcttgttgag
    12841 ctacttcagt tcgagcggta tcaactgtgt caccattggc tgcaagagcc ttgtaaacac
    12901 ctgtcagagc ggactctccc gtcacctgaa tgggtgccgc aacgtcaatc aagacatctg
    12961 tcgcaccggc agtaatggcc gcattggcat actgcgtttc agtaatcaaa gtgatgttct
    13021 gcggtgtctt aatgtccacc acaacccctt tgccagcgtc ctgcttttgc accaagacag
    13081 atgaatagag ggaggctgtg tccgctccag atgtacctaa atattggtcc atatccgtgc
    13141 caacaaccac ctgacggcta acattattaa catccgaaat accaaataga ttgttgacct
    13201 ctgtcgcctg cgcatctgac aaacctccac cgtagactag tgttggcttg ccccattttt
    13261 cattgataac atctgtttga atctcagcct gcaccaaggg agcaaggctc aaactcaacc
    13321 ccagcaccac aggtgctaga aggatttttc ctagtgattt cttcatgttc tttcctttct
    13381 tttgggaaat ggcagagctt ctctgctaat ttatctaccc agtccagata agaagttcat
    13441 gatttcttcc ttggtcttgc gattcttatc gacaaaacga ccgatttcct gaccattttc
    13501 caaaacaact agacttggaa tgcctaaaat agcccattcc tgcgccaaag gcataaagtc
    13561 atctcggtct agttgcacaa aacggaaatc tggaaaagcc tcttcgatag ctgacaaatg
    13621 cggtttgata tagtggcagt ctccacacca agtcgtcaca aatagaaaaa cagtcggctt
    13681 accatcttca atcaagccag ctacttcttc aagatttgtt ggaaaaatca tctttcttcc
    13741 tccctgtatt gaatagagcc ttgggcattt tcaaatagaa acacctgtcc tgcctccatc
    13801 acaactcctc caacgagaga gtcttgcgtt gaggctgttt catccacata gaccgtcgca
    13861 atttctccta cattagcgaa aaagtcacgc acctcctgca aagcctgtgc ttttttacgg
    13921 tcttcctgaa ccttacggta aaattgagca ctagcggtga gcacacctgc ccccaataag
    13981 cctgctagca aggctgttct tttctttttc atgttgacta ttttatcata tttcctctga
    14041 attttcccaa aaatgccatt ggacttgtga cagctgagac aaactctcca caaacatatg
    14101 aaaaagattc agttttcaga aagcatgatt tcatcatgtg tttattgtat atttttccat
    14161 attttcaaga caagtctatc tcttcgtgat aaaatagtag taatcatgtc atggaggaag
    14221 aagaatgact ctttttgaaa aaattaaaga agttacagaa ttacaaagct taccaggctt
    14281 tgaaggacag gttcgcaacc atatccgcca gaaaatcaca ccgcatgtag accgcatcga
    14341 aacagatgga ctaggtggaa tttttggcat caaggataca actgttgaaa atgctcctcg
    14401 catcttagtg gctgcacata tggatgaagt cggctttatg gttagccaga tcaaaccaga
    14461 cggtactttt cgtgttgtcg agctaggtgg ttggaaccct ttggtcgtat cgagtcaagc
    14521 ctttacgctt caactacagg acggtcggac cattcctgcc atttcaggtt ccatccctcc
    14581 acatctaaca cgcgggggca acgctccagg cgtacctgcc atagctgata ttattttcga
    14641 tgctggtttt accaattatg acgaagcttg ggcgttcggc gttcgtccgg gggatgtcct
    14701 cattcccaaa aatgaaacca ttctaacagc caacggaaaa aatgtcattt ctaaggcttg
    14761 ggacaaccgc ttcggtgtcc ttatggtgac cgaactacta gaaagcctat ccggtcaagc
    14821 gttgccaaat cagttgattg ctggggcaaa tgtgcaagaa gaggttggtc ttcgtggtgc
    14881 tcatgcctct acaaccaagt tcaatccaga cattttcctc gctgttgatt gctcgcccgc
    14941 aggtgatatt tatggcgacc aaggaaaaat tggtgacgga actctgcttc gtttctatga
    15001 tccaggtcat atcatgttaa aaaacatgaa agacttcctc ctcacaactg ccgaagaagc
    15061 aggtgtcaaa ttccaatact actgtggtaa aggtggaaca gatgccggtg cagcccactt
    15121 gaaaaaccat ggtgttccat caacaactat cggtgtctgc gctcgttaca tccactccca
    15181 tcaaactctc tacagcatgg atgacttctt agaagctcaa gccttcttgc aggctatcgt
    15241 taaaaaacta gaccgctcaa cggttgattt gattaaaaat tattaaaaca aaagactttg
    15301 ctgggttgaa tgcccggcaa agcctttttt ctatacaagt tcttctaaaa tgtacttcct
    15361 cacataggta atgaaatata gcgagcctgt aatcaggtag agtttttggg gattgtccaa
    15421 gtccgcctgc tccaaccact cctgataggt ctgaactcgt tcataacctg acggataatc
    15481 ttctaactgt accgctctga aatcgtcaaa tgtcgtaacg ctgacaggtc caaattggct
    15541 aagctgggac aacatctggt ccactggctt ggtattgatg gctgcaaaga gaatttcaat
    15601 atctctgtca gcatactttt cttccaagag ttctgtcagg acggcgatgc tttcattatt
    15661 gtgggctccg tcaatcatga gccttggttt catcaattct aagcggcccg gccagatggc
    15721 ttgggacaag ccctggcgga tggtttcatt ggtaatcttt ggaaaatcag ggctgagaag
    15781 ctgagctgtt gtcactgcca aggctgcatt gacctcctgg tgacgaccct gcatcaagac
    15841 tttcaactct tccacacggc cgagagggct tgaaactgca aagcctgctc tgctattttc
    15901 caaaataatc tcccgcccta ccgcataggt cggactctga agctgactgg cgtgatcctc
    15961 aaatactgcc accacttctg gctggtcggt cgcatagagg aggggaaccc gctcacgcaa
    16021 gacagcaacc ttgtgacggg ctatagcagc gtgggtctct cccaaaaaag cctgatggtc
    16081 caagccgatg gacgggcaaa cgactgccaa gggggcaagg acattggtcg catcctgcaa
    16141 accgcccatg cctgcctcca ccaagagaat gtcgggacgc tggtagtggg caaagtagac
    16201 aaacatagcc actactacaa tctcaaactc cgagatggca tccagtccag ccgtctggtc
    16261 caagtcctca atcaagggtt gcaagtctgt cacaatcctc acaaaatcct cctccgaaat
    16321 catctcttgc tcaaagacaa tctgctctcg aaaatcaatg atagacggtg atgtaaagcg
    16381 gccgacggtg taatccgaag actgcaagat agactgtaag gcgttgaggg tcgagccctt
    16441 gccatttgta ccaacaaagt gaatagtcga cacttgaagc tggggattgt ccaagcgttc
    16501 caaaatccag ttgacacgtg caacgccatg ttctaaatca gaggccgggc gactagacaa
    16561 ccactgcctc atttctaaat aattcatgtt tccctctcta taaaaagcaa cagggggatg
    16621 acctgttgct tgatactgtt ttatttaatg cccattaact tggccaattc aggtattttt
    16681 tgtaaacttg gtaagacaag catagtcacg acaatccgta atggaatttc aaaaactgcc
    16741 ttaatcaagc gactgctata cagaacaatc caaggtgttc caaaatggaa atggagggca
    16801 atcggtgtca tgataaagga aatcacaacc tgaatcaaga caacaacccc tgcaacatag
    16861 agccaatcag ccttgttctt ggtgtctagc ggttttcgat agaagaacca gccgtagata
    16921 aatgccgaca ccgcctcaat caaaatccaa gtgaagagga ccgtttgccc gctaaacaag
    16981 acaaagactg ggtctgaaat agccgcaaag acagctgccc aaaccggacc agcaatagct
    17041 cccaaaatag tattgggaac gaaggtaaac tgaacctgta aagtatcaga aatccgaata
    17101 gagaaatagt tctccacaat catgaccaag gcaagggtca tcgcaatagc agccaacagc
    17161 tgcaccgtta gttttggaat tttcttttcc ataaaaaatg ctcctttttc aaaaaatgga
    17221 gctgtcgtgt gtattcgaca gcggatgcaa tggtttaccg cgctactctc agccagatcc
    17281 aatgttccta ctctaggaga catcagatac aagcaaagat cagcttcgtt atgtggcaac
    17341 atcccatcca catacacttg acgcaaacca tctactctgt gcaaatttct ttgctagtct
    17401 attgtatcac acactatata ttttgaccac ttgctaaaaa ctataccttt ctaaaggtat
    17461 aaactataag agaaactggc agtctccgac taccagttcg tttttcttat ttcaaacgtt
    17521 caacttcacg cgcaataacc aattcttcat ccgttggaat aaccaagaca cgaacttttg
    17581 attctggcgt tgaaatgtca ccattcgcac cacgaacatt cttagctggg tctatttcaa
    17641 caccgaacca agacaaacct tctactacgt cattgcgcat aagcggtgca ttttcaccca
    17701 tacctgctgt aaagacaagg gcatctgcac cattcaaaac agcaaagtat tgaccaatga
    17761 atttcttgat acggtcgata aaaatgttat aagccaaaac agcatctggg ttcttagctt
    17821 ccaaacctga ttcaatgtca cgcatatcgc ttgaataacc cgatacacca agcaaacctg
    17881 attgtttatt cagcatgttc acaacatccg cagcgtcctt caactcatca acatttgcaa
    17941 tcaagtaagg aataatcgct ggatcaatat ctcccgaacg agttcccatc attggaccag
    18001 ctagaggagt gaagcccata gaagtgtcaa ctgattgacc gtggtagttg gcagtaatag
    18061 atacaccatt tccgatgtga gccgtaatca attttaattc ctcaatcgga cgtcccaata
    18121 cttttgctgc ctcatgcgct acataatagt gactagttcc gtgagctcca tacttacgaa
    18181 ccttgtggtc ggtatagtac ttttgtggaa tcggataaag ataggcatgc tttggcatcg
    18241 tagtgtgaaa ggctgtatca aaaacagcta cattcaaaac ttctggtagt acttcctcaa
    18301 atgcacgcat tgctgctacg tgagcagggt tatgaagcgg tgccaaagca cttagttctt
    18361 caatttgctc aacctctttt ggtccaataa cagctgattc tttgaaaacc tctccacctg
    18421 caacaacacg gtgtccgata ccagtaattt cctcgtaagc aacgatgatg ttgtgtttaa
    18481 gcaagtcttc taggagaatc ttaaccgcaa ccgtatgatt aggaatatct aaaacttcac
    18541 tttctttctt cccatcatac ttaactgttg agatggaatc gttcaaaccg atgcgctcaa
    18601 caatccctgc cgctaatact gtttcttctg gcatttgata aagttgccat tttagacttg
    18661 aactacctgc attaattgca attgtttttg acatatctta cctcttttaa agcgttttcc
    18721 taactagtat aacagatttt cacttaaatt gcattctctt gcttccaatt tttgaaattg
    18781 agcatgaact tctgaatagc ttctggttct tgaagacttt gtaagggata aacaaacggc
    18841 gtcaacgacc ttgcagcttt cttttgcaag acaaaaatag acttggccat agcagccttc
    18901 ccaaagagat ttggtggcag ggcaatcatg gcaacaatat tggcttgctc ctgtaaccaa
    18961 cctttcagca aatcgctttg cggactagtc aataaatcat ttggagccaa caaaatcgca
    19021 aagccatctt tttccagata tttgagggat tgttccatga gtaaatgatg ggcgtaggta
    19081 tgttcatttg ggctggcgac ctgatagcgg ctagcaatct ggtcatctgg atagtagcca
    19141 ataggcaaat ctcccaaaat tacttgactt tccttcaaaa tctgcggacg taccgcatct
    19201 ccctgagcaa aagaaatatc tgcctgcatg acatccgcaa tacttgccga caaatcaatc
    19261 aagaggtcgt ccacttcaat ccccagatag tccaagtctt tctgactggc gttaagaatg
    19321 gtctgagcta gattgcctgt ccccgaacca atttctagaa ccgtcacctt ttgagtcggc
    19381 accaattggt ctactagaaa agataggata aatccgatag agtctggtgt gaactggtga
    19441 ttgtactgca tgggttcagt ctgattggcc ttgatgagca ggaattggta ggcacgacgc
    19501 cattcttcct tggttaaatc tagttgtttc aaggtctgat tgttattgac aacaaggtcc
    19561 gtctcatgct gattagctac gtaagcagca ttttgctcaa tcatggcatc atagatattg
    19621 gtacctagct ggttttggat ggtctgtacg ttttctaata gcaggtcgta agcctgttcg
    19681 atcttttcaa aattcatact cctatcttat caaaatttca cagactttgc accaaaaagg
    19741 aaagcaagtc aactcaccct ccttctgagg atagccccaa aggaaattga taggtataca
    19801 gaccatcact tgttaactca actgtaacca atagttggtc tcctttaagt tgataacgag
    19861 cctgtccctc ttgaaaggag acccttcctc tattctcctt ctgcttagaa cctgtggtta
    19921 aatttgcttc cttttcattc actaccgctc ccgtaactat tttttctact tgcaggtcct
    19981 gctcgacctc atccaagacc atctgagcca tgatgtaggc agtcgtttct tgccttgcca
    20041 cctgtaccaa gcgactctca gcctcttggc ggtggagata aaactgaagc aaaagactaa
    20101 aaaccgccag catcaaaagg gcataaagca ggatgcccgc cttaactttt ttctttaaaa
    20161 gcataaataa aggtccgctc ctctccgttt ttaaagctaa agtcgatgcg caccagctgg
    20221 ttttcttggt aaatggctgc gctatccacc tgatagagca tgggctggta accctgtccc
    20281 ctgtcatttg ttttccgaaa atcatccgac cgtgacttgc caaaggccaa agcctgttcg
    20341 actttgttga catagacctt gccattttca accttgacca agtccgactg gtcccactcc
    20401 aaccgcaact ggctagaaaa gaccaaccat tccttttgaa cggtctgacc ttgataatgc
    20461 gcttcttgga ccagcagttt tgacaagcct tcaaagacca gaagacttcc tgataggatg
    20521 attaaagcta ccaagcattc caagagagta aaagcaggaa ttttactttt taacaaccga
    20581 taaaacctcc tttccctcgc ggaaaacaat gatcttatcc gctgttcgtt gaacctgaac
    20641 tgtaacaccg tttaaggcta ggttatcttg cccggtctga acagccatct gtgctagatt
    20701 gagaacctcc tgttgttcca attcccaagc ctgtcgccta cgacctgcat ccacagctga
    20761 taaaatcaag ctgcaaatag tcactagggt cgcaagggca accagacttt ccagcaaaat
    20821 ataagcctta ttcttctgtt ttcttatagc gaccactccc tatatataat tgatacgtga
    20881 ctattttttg actaagccga aaacgaatct tggtcagaga agaatttcca ccatcttctt
    20941 caagtgtaat ggtcttccct tccaacactt ctatatttct gggtacctgt acagcctgat
    21001 aaccatttgt aacctcctgt ccaccgatag caaggttcac tttttggtgg aaactagctg
    21061 ccaatttctg actgtcttta tagatggcct caaattccca gagaaaaatt tcttcctgaa
    21121 cagaccgaaa gaccgtttgt actgttcctg ataaggaaac agctaaaaaa ctgacaacca
    21181 acaaggtcag caggctttca aacagggtaa aagccttatt ttttcgccgt agcatactgt
    21241 tttgcttgtt tttcagtaat ataacctgcc tgttgcaaat cctccaccgt tgcttcctcg
    21301 tcatgttcca attcgtagag ctccatctga ctctccacta ctttgacaac ggcagcattt
    21361 cctttctctt gaacagcatc cttttgtttg ctcaaatttg gcacaaataa gagcaagagc
    21421 aggctaatga tccccaaaac gactaacatt tccaccagag tgaacccttt taccttcatt
    21481 tcaactaatt ttttcatttt acaactccat attttgataa atcggcagca acatggctgc
    21541 gtagatgaga acgaccatta aggccacaaa gagaaagacc agcggttgaa tcaactgcat
    21601 ggctctattg acccgagaga aaaaatcctc ccaacactcg gctgcataaa ctgtcaactc
    21661 gccacccaac ttggacttga cctgaccata ctcgacaatc aaactcagct cccgcttaaa
    21721 aaaggcgtag gtctta
//
LOCUS       DASGCC010000018        21190 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.018, whole genome shotgun sequence.
ACCESSION   DASGCC010000018 DASGCC010000000
VERSION     DASGCC010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21190
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.018"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            107..442
                     /gene="gpsB"
                     /locus_tag="U1404_000470"
     CDS             107..442
                     /gene="gpsB"
                     /locus_tag="U1404_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HEM5347453.1"
                     /translation="MASIKFTTKDIFEQDFKIGFRGYDQDEVNDFLDDIMKDYDAYEA
                     IIKELKGEIARLKAQAANSPKTTLPTEESNDVLRTERPSSATNFDILRRLNRLEKEVF
                     GKQIVQDQE"
     gene            581..945
                     /gene="rnpB"
                     /locus_tag="U1404_000471"
     ncRNA           581..945
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="U1404_000471"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            999..2165
                     /locus_tag="U1404_000472"
     CDS             999..2165
                     /locus_tag="U1404_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEM5347454.1"
                     /translation="MKKQFELIATAAAGLEAVVGREIRNLGYECQVENGRVRFQGDVK
                     SIIETNIWLRSADRIKIIVGQFPAKTFEELFQGVFNLDWENYLPLGCKFPISKAKCVK
                     SKLHNEPSVQAISKKAVVKKLQKHFSRPEGVPLQEMGAEFKIEVSILKDVATVMIDTT
                     GSSLFKRGYRVEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKN
                     IAPGLKRSFAFEEWPWVEDQLVAALRKEAQASIKTDLVLDIAGSDIDARMIEIAKKNA
                     FAAGVEQDIVFKQMRVQDLRSDKINGVIISNPPYGERLLDDEAIVTLYREMGQTFEPL
                     KTWSKFILTSDELFETRFGQQADKKRKLYNGTLKVDLYQFFGQRVKHQVQEVQG"
     gene            2175..3629
                     /locus_tag="U1404_000473"
     CDS             2175..3629
                     /locus_tag="U1404_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347455.1"
                     /translation="MGEKNSHHLPLDEEKVLDFEVAKDLTIEEAVKKHKEIEAGVTED
                     DGLLDRYIKQHRAEIESQKFETKINHLPLVEVADEEKNQGHESAEEVEANESSLTEVS
                     EEIAPIVEELSVAPMETLEETVIASTVAMEGLSSVADDSSLELEEDEAEDLDHSEGAD
                     RDQKKKFYFWSAVGLSMIGVMVTALIWMNSVNKSNTATSSSSTSTSQTSSTASSSTDA
                     NVTALEQLYNSFFTDSSLTKLKNSEFGKLAELKVLLEKLDKNSDSYIKAKEQYDHLEK
                     AIAAIQAINGQFDKEVVVNGEIDTTATVKSGESLSATTTGISAVDSLLASVVNFGRSQ
                     QEVASATVASEAAVTSSQGADETVSTGVPATTEVASTTVSGSTTDFGIAVPAGVVLQR
                     DRSRVPYNQAMIDDVNNEAWNFNPGILENIVTISQQRGYITGNQYILEKVNIINGNGY
                     YNMFKPDGTYLFSINCKTGYFVGNGAGHSDALDY"
     gene            complement(3847..4329)
                     /locus_tag="U1404_000474"
     CDS             complement(3847..4329)
                     /locus_tag="U1404_000474"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEM5347456.1"
                     /translation="MKKEVTVESFELDHTIVKAPYIRLISEEVGPKGDIITNFDIRLI
                     QPNENAMDTAGLHTIEHLLAKLIRQRIDGLIDCSPFGCRTGFHMIMWGKQDSEKIAQV
                     IKSSLEEIAEGITWEDVPGTTIESCGNYKDHSLHSAKEWAKLILSQGISTDAFERKPI
                     "
     gene            4457..6070
                     /locus_tag="U1404_000475"
     CDS             4457..6070
                     /locus_tag="U1404_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEM5347457.1"
                     /translation="MEIITVVVTLVSALIGLVLGYFAISLKMKSAKETAELTLLNAEQ
                     EASNVRGRAEEQAEVILKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQELK
                     QIESRLTERATSLDRKDDNLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKLEEQKALE
                     LERVAALSQEEAKEIILTDTRDKLTHEIATRIKEAEREVKERSDKMAKDLLAQAMQRI
                     SGEYVAEQTITSVHLPDDAMKGRIIGREGRNIRTFESLTGIDVIIDDTPEVVVLSGFD
                     PIRREIARMTMETLLQDGRIHPARIEELVEKHRVEMDNRIREYGEAAAYEVGAPNLHP
                     DLIKIMGRLHFRTSYGQNVLRHSIEVAKLAGVLAAELGENVNLARRAGFLHDVGKAID
                     REVDGSHVEIGTELAKKYKENPIVINAIASHHGDVEATSTIAVIVAAADALSAARPGS
                     RRESMEAYIKRLQDLEEIANSFEGIKQSYAIQAGREIRIIVHPNKVTDDQITILAHDV
                     REKIENNLDYPGNIKITVIRETRATDVAK"
     gene            6218..6844
                     /gene="gmk"
                     /locus_tag="U1404_000476"
     CDS             6218..6844
                     /gene="gmk"
                     /locus_tag="U1404_000476"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEM5347458.1"
                     /translation="MKERGLLIVFSGPSGVGKGTVRKEIFESSDNKFEYSVSMTTRPQ
                     RPGEVDGVDYFFRSREEFEDLIRQGQMLEYAEYVGNYYGTPLTYVNETLDKGIDVFLE
                     IEVQGALQVKKKVPDGVFIFLTPPDLEELQDRLIGRGTDSEEVIAQRIERAKEEIALM
                     REYDYAVVNDEVPLAAERVKRIIEAEHFRVDRVIGRYDEMIREQIAER"
     gene            6868..7182
                     /locus_tag="U1404_000477"
     CDS             6868..7182
                     /locus_tag="U1404_000477"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001817694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEM5347459.1"
                     /translation="MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQEFTSV
                     KSTLRALEEIESGNVVIHPDPEAKREAVRRRAEEAKRLAEEEERKIKAQIAKEKEEGE
                     KI"
     gene            7526..9919
                     /locus_tag="U1404_000478"
     CDS             7526..9919
                     /locus_tag="U1404_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEM5347460.1"
                     /translation="MLAQIIVDVPLMQTDQAYSYRVPAELEEGLKVGVRVHVPFGKGN
                     RLIQGIVVDLIDEDDENNLQDLKELAEVLDYSPVLNQEQFWLADQMRKSVFSYKIALL
                     KSMLPSLLNSTYDKLLRPGLGLEMAEQISLFGDKEQIRFSDLDVTEQGKIMRLAQSGK
                     ILVDYVAKDKKQIKTEKWYRVCLEKLREADISNRAKKRQQLREFLLEHSEDQLLSNLK
                     SAYSADTLRYFQEKGYIEVWEEEVSRTQGVFDKVEKTQALDLNPEQAIAVREIVASIG
                     QESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQMTNRFISRFGQQ
                     VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIFAPLTNLGVIIIDEEHEATYKQD
                     SNPRRYHARDVAKLRADYNRATLVLGSATPSLETRARASRGVYGRLTLNQRANPLARI
                     PEVEVVDFRDYIGQQEASNFTPVLIEKIREKLARKEQVVLMLNRRGYSSFVMCRDCGS
                     VDQCPNCDISLTLHMDTKTMNCHYCGFQKGIPQTCPNCQSRSIRYYGTGTQKAYDELQ
                     ELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPNVTLVGVL
                     NADTALNLPDFRSSERTFQLLTQVAGRAGRADKEGEVLIQTYNPNHYAIAFAKEQDYE
                     GFYRYEMGIRKNLGYPPYYFTVGLTFSHKSEEFVVKKAYETVAFLRQHLTDAIQILGP
                     TPKPIARTHNLYHYQIILKYRHEDRLEEVLNQILDWTQERENQDLRLIIDNEPQNMM"
     gene            10051..10989
                     /locus_tag="U1404_000479"
     CDS             10051..10989
                     /locus_tag="U1404_000479"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEM5347461.1"
                     /translation="MTKLIFMGTPAFSATVLRGLLADGNYNILAVVTQPDRAVGRKKV
                     IQMTPVKEVALEYNLPVYQPEKLSGSQEMDELMNLGADGIVTAAFGQFLPTELLNSVD
                     FAVNVHASLLPKYRGGAPIHYALINGDERAGVTIMEMVKEMDAGDMISSDSIAIEESD
                     NVGTLFEKLAVVGRDLLLQALPAYIAGDLKPVAQNPEQVTFSPNIQPEEEVLDWKKSA
                     RQLFNQIRGMYPWPVAHTYWQGERFKIQEAVEVEVEGPVGRVITRSKKELIIATGQGA
                     LSLKTVQPAGKPKMTIADFLNGAGRDIAVGDQFGDQ"
     gene            10976..12289
                     /gene="rsmB"
                     /locus_tag="U1404_000480"
     CDS             10976..12289
                     /gene="rsmB"
                     /locus_tag="U1404_000480"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEM5347462.1"
                     /translation="MVINKHETARSLALSVLEQVFDQGAYSNIALNKALESSRLSAQD
                     KGLATELVYGTVSRKITLEWYLAHFIEDREKLDTWIYYLLMLSLYQLVYLDKLPTHAV
                     VNEAVNIAKRKPGTDKFVNAILRKISQSTLPNPADIKRKNKRLSVQYSVPVWLVQTLI
                     AEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSPVGLVKSHGHFA
                     GTDHFKKGLITIQDETSQLVAPTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYAL
                     DLYDHKLNLIEENAHRLGLEDKIETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIR
                     RKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIITYSTCTIIAKENQEVIQEFL
                     QNHPNFEQVTLEHPQTDIMVDGCLLITPEQYKTDGFFIGQLRRKS"
     gene            12327..13064
                     /locus_tag="U1404_000481"
     CDS             12327..13064
                     /locus_tag="U1404_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEM5347463.1"
                     /translation="MEIALLTDVGQKRSNNQDYINRYKNRAGIDLVVLADGMGGHRAG
                     HIASEMAATDLGAAWVDTQLVTLNDVREWMVAIIDAENQKIHELGQTEEYKGMGTTLE
                     AVVVIDNQMIYAHVGDSRVGLIRDGEYTRLTNDHSLVGALVRAGQLTEEEAQRHPQKN
                     IVTQSIGQAEPIEPDIALKTLEVGDYVLINSDGLTNMVPTEDIRDIVLSDVSIESKVE
                     TLVRFANNAGGLDNITVGLLHITEEAR"
     gene            13064..15058
                     /gene="pknB"
                     /locus_tag="U1404_000482"
     CDS             13064..15058
                     /gene="pknB"
                     /locus_tag="U1404_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEM5347464.1"
                     /translation="MIQIGKIFAGRYRIVRQIGRGGMADVYLARDLILDGEEVAVKVL
                     RTNYQTDQIAIQRFQREARAMAELDHPNIVRISDIGEEDGQQYLAMEYVNGLDLKRYI
                     KENAPLSNDVAVRIMGQILLAMRMAHTRGIVHRDLKPQNVLLTSNGVAKVTDFGIAVA
                     FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIILFEMLTGRIPYDGDSAV
                     TIALQHFQKPLPSVREENANVPQALENVVLKATAKKLNERYKSVAEMYADLASALSMD
                     RRNEPRVELEGNKVDTKTLPKLSQANVETKVPHTNSSAQVSATDKSPGKKEVAKSGNK
                     PVSKPRPGMRTRYKVLIGAILLTVIATGLMFFNTPRTVTVPDVSGQTVEKATEMIEVA
                     GLEVGNITEEATATVDEGLVIRTSPAAKTTRRQGSKIDIVVATAALASIPDVVDKESD
                     TARQELEALGFQVTIKEEYSEKVAQGLVIKTDPGANSSAEKGAKITLYVSKGVAPQVV
                     PNVVGKSQENATQILQTAGFSIGTITQEYSSSVTAGQVISTDPVANTELAKGSIINLV
                     ISKGKELIMPDLTSRNYTYSQARSQLQALGVNAESIEKQEDRSYYSTTSDIVIGQYPA
                     AGATIDGTVTLYVSVASTRTSSDSSTGSSTSTSTSTDSGQ"
     gene            15338..16042
                     /locus_tag="U1404_000483"
     CDS             15338..16042
                     /locus_tag="U1404_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HEM5347465.1"
                     /translation="MEKMRKVQFFLLIESMIFTMAAFDVVANEASRTLLLFSALLLVI
                     WYFLGRKVNSVLLVSSLSLLFLVFVLNPFFIIGIMLLVVYMLINFFSRYEKRNQYTHI
                     VFSDYSLQVQKEKNRWFGNHDHSQDRFGFEDINIVRLFGNDVVDLDKTVLVGRDNIVV
                     IRKTFGRTKIIVPIDVEVALSATSIYGRVSFLGESYWDLRNESIAVNSSDYQESHKRV
                     KVVTNNILGDVEVVRV"
     gene            16039..17055
                     /locus_tag="U1404_000484"
     CDS             16039..17055
                     /locus_tag="U1404_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5347466.1"
                     /translation="MRKRTYLLLAWFACLIVFVVIASTLPLLNYSLLDVTLWISTEQL
                     VFTLILLVIVLTLFLAVMVQTVSLASTQVMRTKLQAILKNKSIRTDTESDQLLLQLSD
                     KVRNLTRQVQLVDNQDLVKKEEIVEGERKRIARDLHDTVSQELFATSMILSGLSSNLS
                     TLPQETLQEQLMLVKDMIESAQRDLRILLLHLRPSELESKTLVEGFELILREVSDKSN
                     IIVHFQHEVEELPKLIEEHLFRIAQEIISNTLRHAKAKHLDVYLLQKETELQLKMTDD
                     GIGFQQGADDELSYGLQNIRERVEDMAGTIKIRTAPNKGVAIDIRIPLLKGKEDEYDS
                     SDAG"
     gene            17027..17668
                     /locus_tag="U1404_000485"
     CDS             17027..17668
                     /locus_tag="U1404_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5347467.1"
                     /translation="MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAK
                     ALEVKPDVVVMDLVMPKMTGVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARG
                     YMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
                     KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ"
     gene            17718..19118
                     /locus_tag="U1404_000486"
     CDS             17718..19118
                     /locus_tag="U1404_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5347468.1"
                     /translation="MDAKLRYKAKKIKIVFFDIDDTLRVKNTGYIPESIQQVFNSLKE
                     KGILTGIASGRTPYGLVPEIKALKPDFFAMINGSYVEDAKGQVVYHQPMPQNIVESVL
                     NWAKEIGIEYGMLGSQKGTLSARTDRISQVIDLIYEGLEINPTFYKENDIYQLLTFEK
                     DGHEVELPEELQAELRSVRWDAISSDIVLKGSSKATGVAKVVEKLGLKPENVLVFGDG
                     LNDIELFDYAGISIAMGHSHPELQKHADYITKKVEEDGIFDALEKLGMVEKEKYFPQL
                     DLENVTGPVAHIKTNHGKLTVKLFPEIAPKTVANFVALSKDGYYDGIIFHRIIKDFMI
                     QGGDPTGTGMGGESIYGTAFEDEFSMEAFNLRGALSMANAGPNTNGSQFFIVQNQNFP
                     YNAKELERGGWPKEVAEAYVKNGGTPHLDQRHTVFGHLVDEESFVVLDAIAAVATDSA
                     DRPHEDVVIETIEIED"
     gene            19120..19491
                     /locus_tag="U1404_000487"
     CDS             19120..19491
                     /locus_tag="U1404_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEM5347469.1"
                     /translation="MKIGDKLKGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNI
                     YDHLKLGQEVLVQVVDFDEYTEKASLSIRTLEEEQQKIPRHHRFTNERNKIGFSPLAK
                     QLPKWIEEAKGYLKEHKEKKV"
     gene            complement(19518..20443)
                     /gene="cysK"
                     /locus_tag="U1404_000488"
                     /pseudo
     CDS             complement(19518..20443)
                     /gene="cysK"
                     /locus_tag="U1404_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774985.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
     gene            complement(20533..21165)
                     /locus_tag="U1404_000489"
     CDS             complement(20533..21165)
                     /locus_tag="U1404_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEM5347470.1"
                     /translation="MKEFKTIREDGIVEEEIKKSRFICFMKRVTSEEEARDFINKIKK
                     EHYKATHNCSAFVLGENMEIKRSSDDGEPSGTAGVPMLTVLENHELTNVATVVTRYFG
                     GIKLGAGGLIRAYAGVVANAVKEIGVVEVKEQEGISISMSYTQYQEFANWRAEQGLEE
                     FDAQFTTEVSTMIFVDKEFLEQTLASLTDFYHGKVSAEKANSRIVEVPVY"
BASE COUNT         6434 a         3936 c         4926 g         5894 t
ORIGIN      
        1 ttgaatgagg aggctgaaaa tttttcaaat tctgagtgat ttgacttgat ttttccctgt
       61 ttttttaata taataggagt agtgacgttt tagattaggg agagaggtgg caagtattaa
      121 atttacgaca aaagatattt tcgagcaaga ttttaaaatt ggttttcgtg gctatgatca
      181 agatgaagtg aacgattttc ttgatgatat tatgaaagac tatgatgctt atgaagcgat
      241 tatcaaggaa ttaaaaggcg aaattgctcg attgaaagcg caggcagcaa attcccccaa
      301 aacaactctt cctactgaag aatcgaacga tgtattgcgt acagaacgtc catcttcagc
      361 gacaaacttt gatattctcc gccgtctgaa tcgtctggag aaagaagtat ttggaaaaca
      421 aatcgttcag gatcaagaat agaaaattgt acacctaaac tgacacttta tttgcagtta
      481 ttttcttgtg cacaaataca ttctgtattt gtgtcagaga tattccttga tttaaagtgg
      541 cttgctttgt agatacaact tctaagataa ttaaggtgca atttttggat aatcgcgtgg
      601 tagttttcta ccatgaggaa agtccatgct agcactggct gagatgccag tagtgtttgt
      661 gctaggcgaa tcaataagcc tagggacgcc cttgggcgtt acggcggtta aaatggctaa
      721 gtcttttgat atgtcagagt agatctgaaa gtgccacagt gacgaagttt ttatggaaac
      781 gtaaaaaatg gaacgcggta aacccctcaa gctagcaacc caaactttgg tcggggcatg
      841 ggatggatgg aaatgaacag aaatcctgac tgtttagaca gtagacagat gattatcgaa
      901 ggtggtagaa cctagtacca ctggaacaaa acatggctta cagaaaattg cataaaatag
      961 gtagctagct ctgctagctt ttattgtaga ggaaaaaaat gaaaaaacaa tttgagttga
     1021 ttgcaacggc agcagctggt ctggaagcgg ttgtgggtcg agaaattcgt aatctcggct
     1081 atgaatgcca agtggaaaat ggccgtgtta gattccaagg agatgtaaaa tccattatcg
     1141 aaaccaatat ctggctgcgt tcagcagata gaattaaaat cattgttgga caatttccag
     1201 caaagacttt tgaagagttg ttccaaggag tttttaactt ggattgggaa aattacttgc
     1261 ctctaggctg caagttcccc atttccaagg ccaaatgtgt caaatcgaaa ttgcataatg
     1321 aaccaagtgt gcaggctatt tctaagaaag cagttgtaaa gaaactgcag aaacacttct
     1381 ctcgtcccga aggggttccc ttgcaagaga tgggggcaga gtttaaaatt gaagtgtcga
     1441 ttttgaaaga tgtggcgaca gtcatgattg atacgacagg ttctagtttg ttcaaacgtg
     1501 gttatcgggt ggaaaaaggt ggcgcaccaa tcaaagaaaa tatggcggct gctattttgc
     1561 aattatcgaa ttggtatcca gataaaccgc ttattgaccc tacttgcgga tcgggaactt
     1621 tctgtattga ggcagctatg ttggcaaaaa atatagctcc aggtttgaag agaagttttg
     1681 catttgagga atggccgtgg gttgaggatc aattggtggc tgcattacgc aaagaagcgc
     1741 aagcttctat caaaacagat ttggtattag atattgctgg atcagatatt gatgctcgta
     1801 tgattgaaat tgcgaagaag aatgcatttg cggcaggagt tgagcaggat attgttttca
     1861 agcaaatgcg tgtgcaagac ttgcgttcag ataaaattaa tggtgtcatc atttctaatc
     1921 caccttacgg agaacgtttg ttggatgatg aagccattgt taccctttat cgagaaatgg
     1981 ggcagacttt tgaaccactc aaaacatggt ctaagtttat tctaactagt gatgagttgt
     2041 ttgaaacccg ttttggacag caagcggata agaaacgcaa actgtataat ggtaccctaa
     2101 aagtggatct ttatcaattt tttggtcaac gagtgaaaca tcaagtgcaa gaagtgcaag
     2161 gataggagga catcgtggga gaaaaaaata gtcatcatct tcctttggat gaggagaaag
     2221 ttttagattt tgaagtggcg aaagatttaa caatcgaaga agcagtcaaa aaacataagg
     2281 aaattgaagc gggtgtgaca gaagatgatg gtctcttgga tcgttacatc aagcaacacc
     2341 gtgcagaaat tgaatctcaa aaatttgaaa ccaaaatcaa tcatcttcct ttagttgagg
     2401 tggctgatga ggaaaaaaat caaggacatg aaagcgcgga agaggtagaa gcaaatgagt
     2461 cttctcttac ggaagttagt gaggagattg ctcctattgt agaagaactt tcggtagctc
     2521 cgatggaaac cttggaagaa acagtgattg caagtactgt agcaatggag gggttatctt
     2581 cagtggcaga tgattctagt ttagaattgg aagaagatga agccgaagac ttggaccata
     2641 gtgagggcgc agatagggac cagaaaaaga aattttactt ctggtcagca gtagggcttt
     2701 caatgattgg tgtaatggtg acggcgctga tttggatgaa ttcggttaac aaatcgaata
     2761 ctgcgacttc ttcaagttca acaagtacaa gccagacgtc atcgacagca tcaagttcga
     2821 cagatgcgaa tgtgaccgct ttagaacagc tctataatag tttctttacg gatagtagtt
     2881 tgaccaagct aaaaaattca gagtttggta aattagcaga actgaaagtg ctgttggaaa
     2941 aattggataa gaattcggac agttatatca aagctaaaga acagtatgat catcttgaaa
     3001 aagccattgc agccattcag gccattaatg gtcagtttga taaagaagtc gttgttaatg
     3061 gtgaaattga tacaacggcg acggttaaat caggagaatc tctttctgcg acaacgacag
     3121 ggattagtgc ggttgacagt ctattggcat cggtcgtgaa ttttggtcgt tcacaacagg
     3181 aagtcgcttc ggctacggta gcaagtgagg ctgcagtcac aagcagccaa ggtgctgatg
     3241 aaactgtatc tactggtgta ccagcgacaa cagaagtcgc ttcaacaacg gtttcaggct
     3301 caacaaccga ctttggtatt gccgtgccag ctggtgtcgt cttgcaacgt gaccgcagtc
     3361 gtgttcctta taatcaagca atgattgatg atgtaaacaa tgaagcatgg aatttcaatc
     3421 caggtattct tgaaaatatt gtgactatct cgcaacaacg tgggtatata acaggcaatc
     3481 aatatatctt ggaaaaagtt aatattatca acggcaatgg ctactacaat atgtttaaac
     3541 cagatgggac ctacttgttc tctataaatt gtaagacagg ctactttgtc ggcaatggtg
     3601 ctggtcattc tgatgccttg gattattaag caaaaaagcg ttttagccgc ttcagattga
     3661 agaaaaagtc cattttggac aattttcttc aatctttttt ctttatgttg aaaataaaaa
     3721 actctcagaa acgccgaaat atcaatgttt ctaagagttt aatgacttgc tatctttcgt
     3781 aaacttcttc aattttttat attttaggat tttgtctacg ttctgagcgg tgtatccgtt
     3841 tttttgttag attggttttc tttcaaaggc atctgtagag attccctgag aaaggattag
     3901 tttggcccat tctttagctg aatgaaggct gtggtctttg tagttaccgc atgattcaat
     3961 ggttgttcct gggacatcct cccaagtgat gccttctgca atttcttcca aactcgactt
     4021 gatgacttga gcaatctttt cagagtcttg ttttccccac ataatcatgt ggaaacctgt
     4081 ccgacacccg aaaggagagc agtcgattag cccatcgatg cgctggcgaa ttagtttagc
     4141 taatagatgc tcaatggtat gtagaccagc tgtatccatt gcattttcgt tgggttggat
     4201 aaggcgaata tcaaagtttg taataatgtc tccttttggt ccgacttctt cagaaattaa
     4261 gcggatgtaa ggtgctttta caatagtgtg gtctagctcg aagctttcga cagtgacttc
     4321 ttttttcatg gtttcctcca aataagtgat gaatttatta taccatattt gacaatttgg
     4381 aattgtgaaa tcgtttcaaa tatgataaaa tagatacaga ttttgtgaaa atcgaattat
     4441 aaaaaagagg tagaatatgg aaatcattac agttgtagtg actcttgttt ctgctctcat
     4501 tggtttagta ttaggttact ttgccatttc tttgaagatg aaatctgcaa aagaaactgc
     4561 agaattgaca cttttaaacg cagaacaaga agctagtaat gttcgtggtc gagcagaaga
     4621 gcaagctgag gttattctaa aaacagctga gcgcgatcgc cagaccttga aaaaagaatt
     4681 actcttggaa gctaaggaag aagctcgtaa gtaccgagaa gaaattgcag aagaatttaa
     4741 gtcagaacgt caagagttga agcaaatcga atcacgcttg acagagcgtg cgaccagctt
     4801 ggaccgcaaa gacgataatt tgaccaacaa ggaaaagact ttggaacaaa aggaacaaag
     4861 tctgaccgat aaagctaagc acattgatga gcgtgaacaa gaagttgtaa aactcgaaga
     4921 acaaaaagct ttggagttag aacgagtggc ggccctcagt caagaagagg cgaaggaaat
     4981 tatccttacc gatacacgcg ataaactgac gcatgaaatt gcgactcgta tcaaggaagc
     5041 agagcgtgaa gtaaaagagc gttctgacaa gatggcaaag gacttgttag cccaagcgat
     5101 gcaacgcata tcaggtgaat atgtggctga gcagacgatt acatcggttc atttaccgga
     5161 tgatgcgatg aagggacgga ttattggacg tgagggtcga aatattcgta cctttgaaag
     5221 tctcacaggt atcgatgtta tcattgatga tacaccagaa gtggttgttc tatcaggttt
     5281 tgatccgatt cgccgtgaga ttgcccgtat gaccatggag accttgcttc aagatggtcg
     5341 tattcatcca gctcgtattg aggagttggt tgagaaacac cgtgtagaga tggataaccg
     5401 tattcgtgag tatggggaag ctgctgctta tgaagttggg gcaccaaacc ttcatccaga
     5461 cttgattaaa atcatgggac gtttgcattt ccgtacctct tatggacaaa atgttcttcg
     5521 ccactcaatc gaagttgcta aattagcagg tgtacttgct gctgaattgg gcgagaatgt
     5581 gaatttggca cggcgagctg gtttcctaca tgacgttggt aaagctattg accgtgaggt
     5641 ggatggaagc cacgttgaaa tcggtacaga attggctaag aaatataaag agaatccaat
     5701 tgttatcaat gcgattgcta gtcaccatgg cgatgtagaa gcgacaagta ctattgcagt
     5761 cattgtggct gcggcagatg ctctgagcgc tgctcgtcca ggttcgcgtc gtgaatctat
     5821 ggaagcctac atcaaacgtc tgcaagactt ggaagaaatc gccaacagtt ttgaagggat
     5881 taaacaatcc tatgctattc aggctggtcg tgaaattcgg attatcgttc atcctaataa
     5941 ggtcactgat gatcagatta ccatcttggc ccatgatgtt cgtgagaaaa ttgaaaataa
     6001 tctggattat ccaggaaata tcaaaatcac agttatccgt gaaacaagag cgacagatgt
     6061 tgctaagtaa atgtagaaga gtccgaaggg ctctttttct actggctcaa agttcgttta
     6121 gggttgggaa tagaaaatat tctaatcgta tttaaaagca gttgaaattc atgctaaatt
     6181 ttgttacact agaatgaaag atttaaaagg agatatcatg aaagagcgag gcttactcat
     6241 tgtcttttct ggcccatctg gtgttggaaa aggaacagtt cgaaaggaaa tttttgaaag
     6301 ctctgataat aaatttgaat attctgtatc catgacgaca cgtccacaga gaccgggaga
     6361 agttgatgga gttgactatt tcttccgtag tcgtgaggaa tttgaagatt tgattcgcca
     6421 gggtcaaatg ttggaatatg cagagtacgt tggaaattac tatggaacac ctctgaccta
     6481 tgtcaatgaa actcttgata agggaattga tgtcttttta gaaattgaag tacagggtgc
     6541 cctccaagtg aagaaaaagg ttccagatgg ggtgttcatt ttcttgacac cacctgactt
     6601 ggaggagttg caagatcgct tgattggtcg cggaacggat agtgaggaag ttattgctca
     6661 acgtatcgaa cgtgccaagg aagagatcgc cttgatgcgt gagtatgatt atgcagttgt
     6721 gaacgatgaa gtcccgttgg ctgctgagcg tgtcaagcgt attatcgaag cagaacattt
     6781 ccgtgtagac cgagtgattg gtcgctacga tgaaatgatt cgtgaacaga tagcagaacg
     6841 ataaaagaaa gaagagagaa tcgcattatg atgttgaagc cgtcaattga taccttgttg
     6901 gataaggtac catctaagta ttctttggtt attcttgagg ctaagcgtgc ccatgaattg
     6961 gaagcaggtg ccaaaccaac tcaagaattc acctcagtga aatccaccct acgcgccttg
     7021 gaagaaattg aatcaggtaa tgtagtcatt cacccagacc cagaagcgaa acgtgaggct
     7081 gttcgtcgcc gtgccgaaga ggctaaacgt ttggcggaag aagaagagcg taaaatcaaa
     7141 gctcaaattg ctaaagaaaa agaagaaggc gaaaagattt agaaacaaga ctcggttggg
     7201 attgccatcc gggtttcttt tcactttcgg aatgatgaaa gttttgacag aaaggaggca
     7261 ggtcatttag tttatctttt aatatttggg gagtgggaaa gaactcgacc aagataaaaa
     7321 gagttcgtct tcccaccccc gcacagttga ttaggctaga tttggagtgc aaaacacgaa
     7381 caaatctgcc aatcaaccac tgcgctgaga tgttgacacg aactctgagt agtggtcctg
     7441 ggctttttgc ccagcctcgt tatacataaa gtgaaccttg ttcgcatcag tcgtgatatt
     7501 agaaggtaaa ataaatggag atggtatgtt agcacagatt attgtagacg tccctttgat
     7561 gcagacagat caagcttatt cctatcgagt tccagctgag ttggaagagg ggctcaaggt
     7621 tggcgtgcgt gtccatgtac cctttggtaa gggaaatcgg ctgattcaag gtattgtagt
     7681 tgatttgatt gatgaagatg atgaaaataa cttacaagac ttgaaagagc ttgccgaggt
     7741 tttggactat agtcctgttc tcaatcaaga gcaattttgg ttggcggacc agatgagaaa
     7801 gtcggtcttc tcctataaaa ttgccctctt aaaatccatg ttgcctagct tgctcaattc
     7861 gacctatgac aaattgctcc gtccagggct tggtttggaa atggcagagc agattagtct
     7921 gtttggtgat aaggagcaga ttcgtttttc tgacttggac gtgacagagc aagggaaaat
     7981 catgcgtctg gcccagtcag gaaaaatctt ggtagactat gtggccaagg ataagaagca
     8041 aatcaagaca gaaaaatggt accgagtttg tctggagaaa ttacgagaag cagacatcag
     8101 caatcgagcc aagaaacggc agcagttaag ggaatttctt ctggaacact cggaagacca
     8161 gcttctttca aacctaaaat cggcctattc agctgatacg ctccgctatt tccaagaaaa
     8221 aggctatata gaagtctggg aggaggaagt gtcgcggact cagggagttt ttgataaggt
     8281 ggaaaaaacg caggccttgg atttgaatcc agagcaggcg attgcggttc gtgagattgt
     8341 ggcctctatc ggtcaggaaa gtcagacatt tctactgcaa ggagtgacag gttctgggaa
     8401 gacggaagtc tatctccagg ttattgatag ggtcttgaaa atgggaaaaa cggctattat
     8461 gctagtgcct gaaatttcct tgacccctca gatgaccaat cgttttattt ctcgttttgg
     8521 ccagcaggtt gccattttac actcgggctt gtctgatggt gagaagtatg acgagtggcg
     8581 gaagattgag gcggggaatg cccaggtggt tgtcggggct cgttcggcta tttttgcacc
     8641 attgacaaac ttgggtgtta tcatcattga tgaggagcat gaggcgacct acaagcagga
     8701 cagcaatcca cgacgctacc atgcgcgtga tgtggcaaag ttgcgggctg attataatcg
     8761 agcgaccctg gtcttgggtt ctgctacgcc gagtcttgaa acacgggctc gggctagtcg
     8821 aggagtctat ggaagactga ctcttaacca gagggccaat cccttggctc gtattccaga
     8881 agtggaagtt gtggatttcc gtgattatat cggtcagcag gaggctagta attttacccc
     8941 tgttctgatt gaaaagataa gagaaaaatt ggctcgtaag gaacaggtcg ttcttatgtt
     9001 gaataggcgt ggttattctt cttttgtcat gtgtcgtgat tgcgggagtg ttgaccagtg
     9061 tcccaactgt gatatttccc ttacgcttca catggataca aaaacgatga attgccatta
     9121 ttgtggtttt caaaagggga ttcctcagac ctgtccaaac tgtcaaagtc gttctattcg
     9181 ttattatggg acgggtacgc aaaaggccta cgatgaattg caggagctct tgccagaagc
     9241 tagaattttg cgtatggatg tggatactac caagaaaaaa ggtgctcatg aggacttgct
     9301 cgaacggttt ggtcgaggcg aagcggatat tcttctggga actcagatga ttgccaaggg
     9361 cttggatttt ccaaatgtga ccctagttgg cgtgctcaat gcggatacgg ctctgaattt
     9421 gcctgatttt cggtcttctg agcggacctt ccagttgcta actcaggtag ctggtcgggc
     9481 tggtcgagct gataaggaag gggaggtcct gattcagacc tataacccca atcattatgc
     9541 cattgctttt gccaaagagc aggattatga aggtttctat cgttatgaga tgggcattcg
     9601 gaaaaatctt ggttatccac cttactattt tacagttggc ttaacctttt cgcacaagtc
     9661 agaagaattt gtcgtgaaaa aagcctatga aactgtagcc tttctccgtc aacacttaac
     9721 agatgcaatt caaatcttgg gaccgacgcc caagcctatt gccagaactc ataatctcta
     9781 ccactaccag atcatcttga aataccggca tgaagaccgt ttggaagagg tattgaatca
     9841 gattttggat tggacacagg agagagaaaa tcaagatttg cgactgatta ttgacaatga
     9901 accgcagaat atgatgtgag gtcactattg accttgcatt tttttgtttt aagaaccttt
     9961 gattaaggaa aaaataagca aaaatgatat aattagggga tagtataatt gatatgaatc
    10021 agaaaatgaa aaggagatga gaacacgaat atgacaaagt tgatttttat gggaacgcca
    10081 gcgttttcag cgacggtctt aagagggctc ttagctgatg gaaattataa catactggca
    10141 gttgtaaccc agccagaccg agctgttgga cgaaaaaaag tcatccaaat gacacctgtg
    10201 aaagaagtag ccttggaata caatttacca gtctatcaac cagagaagct atctggaagc
    10261 caagaaatgg atgagctgat gaatttagga gcagatggga ttgtgacggc agcttttggg
    10321 caattcctac caaccgaatt attgaactca gttgactttg cagtcaatgt tcatgcttct
    10381 cttcttccta aataccgtgg cggtgcccct attcattacg ctttgattaa cggtgatgaa
    10441 cgtgccggcg taaccatcat ggaaatggtc aaggaaatgg atgccggtga catgatttcc
    10501 agcgatagca ttgctattga agaaagcgac aacgtcggca ccttgtttga aaagttggct
    10561 gttgttggtc gggatttatt attacaagcc ttaccagcct atattgctgg tgacttgaaa
    10621 ccagtcgctc aaaatccaga acaggtaacc ttctcaccaa atatccagcc agaagaagaa
    10681 gtgcttgatt ggaagaaatc cgctcgtcaa ctcttcaatc agattcgcgg tatgtatcca
    10741 tggccagttg cccacaccta ttggcaagga gaacggttta aaattcaaga agctgtcgaa
    10801 gtagaagttg aaggaccagt tggtcgggtt attactcgaa gcaagaaaga attgattatt
    10861 gcgacaggtc agggagccct ttctctgaaa actgtccagc cagctggtaa gccaaaaatg
    10921 accattgcag actttttaaa tggtgcaggt cgagatattg cagtaggaga tcaatttggt
    10981 gatcaataaa catgaaacag caagaagtct agccctatct gtattggaac aagtctttga
    11041 tcaaggtgct tactcgaaca tcgctctcaa taaggcccta gaatcttctc gtttatcagc
    11101 acaggacaag ggcttggcga ccgagttggt ttatgggacg gtttctcgta aaattaccct
    11161 agagtggtat ttggcacatt ttatcgaaga tagagaaaag ttggacactt ggatctacta
    11221 tctcctcatg ttgagcctct accagttggt atatttggac aaattgccta cccacgcagt
    11281 tgtcaatgag gcagttaata ttgccaagcg aaagcctgga actgacaaat ttgttaatgc
    11341 cattttgcgt aaaatcagtc aatcgacttt gccaaatcca gcggacatca aacgaaaaaa
    11401 taaacgtcta tccgttcagt attctgtgcc agtttggttg gtccaaaccc tgattgcaga
    11461 atatggcgat gaacgtgcag agaagatttt ccaaagctta catgatcgga ataaggccag
    11521 tgtacgtgtg acagatggtc aacaagtgga gcgattggca gaggagctag gcgcccaaca
    11581 ctcgcagtta tcaccagttg ggttggttaa atcccatgga cactttgcgg ggacagatca
    11641 tttcaagaaa ggacttatca ccattcaaga tgaaaccagt caattggtag ctccgacttt
    11701 ggatattcaa ggagatgaaa tcatcttgga tgcctgtgca gctccgggtg gaaagacctg
    11761 tcatatggca agttatctta cggatggaaa agtttatgcg ttggatttat atgatcataa
    11821 actaaacctg attgaagaaa acgcacatcg tttaggccta gaagataaga ttgagaccaa
    11881 aggtctggac gccagtcgtg ttcatgagga atttggacct gatacctttg ataagatatt
    11941 ggtagacgcc ccttgttcag gtattggact catccgccgt aagccagata ttcgttataa
    12001 caaggcatcg atggactttg attctctaaa gactatccag ttgcagatac tagacagtgt
    12061 ttgccaaagc ttgaaaattg gtggtataat aacctatagc acatgtacga ttattgctaa
    12121 ggaaaaccaa gaggttattc aagaatttct gcaaaaccat cccaattttg aacaggtgac
    12181 actagaacac cctcaaacag atattatggt ggatggctgc ttgttgataa cccctgaaca
    12241 gtataagaca gatggatttt tcatcggtca acttagacga aaatcctaga ataagaggag
    12301 gaagttgctt agcaacgata aaaattatgg aaattgcatt acttactgat gtaggacaga
    12361 aacgttcgaa caaccaagac tatatcaatc gctacaaaaa ccgcgcaggg attgatttgg
    12421 tcgtgttagc tgatggaatg ggtggtcacc gtgccggcca tattgctagt gaaatggcag
    12481 caacagattt gggagctgct tgggtcgata ctcaattagt gaccttaaat gatgtccgtg
    12541 aatggatggt tgcaatcatt gatgctgaaa accaaaagat tcatgaactt ggacagacag
    12601 aagaatacaa ggggatggga acaactcttg aagcagttgt tgtcatcgac aaccaaatga
    12661 tctatgccca tgttggagat tcacgagttg gattgattag agatggcgaa tatacacgtc
    12721 taaccaacga ccattcgctg gtaggtgccc ttgttcgagc tggtcagctc acagaagaag
    12781 aagcacagcg tcatcctcaa aaaaatattg taactcagtc cattggacaa gccgaaccaa
    12841 ttgaaccaga cattgctttg aaaactcttg aggttggaga ttatgtcctt attaacagcg
    12901 atggcttaac caatatggta ccaaccgagg acattcgtga tattgtattg agtgatgttt
    12961 caattgaaag caaggtagaa acacttgtac gttttgccaa taatgcaggc ggtctagata
    13021 atattacagt aggtttgctt cacattacgg aggaggctag gtaatgattc aaatcggtaa
    13081 gatctttgcc ggtcggtatc gaatcgttcg gcaaattggt cgaggcggta tggcagatgt
    13141 ttacctagca agagatttga ttttagatgg agaagaggtt gctgttaaag ttcttcggac
    13201 caactatcag acagatcaaa ttgctatcca gcgttttcaa cgtgaagcgc gtgccatggc
    13261 agaacttgac catcccaata tcgttcgtat ttcggacatc ggtgaagaag atggtcaaca
    13321 gtatctggct atggaatatg tcaatggcct tgatttaaaa cgttatataa aagaaaatgc
    13381 accactctcc aacgatgttg cggtgcgaat tatgggacag attctccttg ctatgcgaat
    13441 ggcgcacacg agaggaattg tccatcgaga tttgaaacct cagaatgtcc ttttgacttc
    13501 caatggagtc gctaaagtaa cagactttgg tattgcagtt gcctttgctg aaacgagttt
    13561 gacacaaacc aactccatgt tggggtctgt tcactatctt tcacctgagc aggcgcgtgg
    13621 ttcgaaagcg accattcaaa gtgacattta tgcgatgggg attatccttt ttgaaatgtt
    13681 gacgggtcgc attccctatg atggagacag tgctgtgacg atcgctcttc agcatttcca
    13741 aaaacctctc ccatctgtta gagaagagaa tgccaacgta cctcaggctt tagaaaatgt
    13801 tgtactaaaa gcaacggcta aaaaattaaa cgagcgctat aagtcggttg cagaaatgta
    13861 cgcagattta gcttcggctc tatccatgga ccgtcggaat gaacccaggg ttgaactaga
    13921 agggaacaag gttgatacaa aaaccttgcc gaaactctct caagccaatg ttgaaacgaa
    13981 agtaccgcat acaaatagtt ccgcccaagt ttctgcgaca gataagagcc ctggtaagaa
    14041 agaagtggcg aagtcgggaa ataagcctgt ttcaaaacca aggccaggta tgcgtacacg
    14101 ctacaaagtc ttgataggag ctattttgtt aacagtcata gcgactggac tcatgttttt
    14161 caacactcca cgaacagtta cagtccctga tgtatctggt caaaccgttg aaaaagctac
    14221 agaaatgatt gaagtggcag gattggaagt tggaaatatc acagaagaag cgacagcgac
    14281 tgtagatgaa ggcttggtaa tacggacctc tccggctgca aagacgacca gacgtcaagg
    14341 gagtaagatt gatattgtag tagcaacggc tgcgctggca tctattccag atgtggtgga
    14401 taaggagtct gatactgcac ggcaggaatt ggaggccctt ggtttccaag tgacaataaa
    14461 agaagaatat agcgaaaaag ttgcccaagg actcgttatc aaaacagatc caggagcaaa
    14521 tagttctgct gagaagggtg caaaaattac cctttacgtt tccaaaggag tggcgccaca
    14581 agttgttcca aacgttgttg gaaaaagtca ggagaatgct actcaaattc ttcagacagc
    14641 aggcttcagc attggaacca ttactcagga atatagctca tctgttactg caggtcaggt
    14701 tatcagcaca gatcccgttg ccaatacaga gttggcaaaa ggttctatca tcaatctagt
    14761 tatttcaaaa ggaaaagaat tgattatgcc tgatttaaca tctcgcaatt acacctattc
    14821 acaggcgcgt agtcaattac aagccttggg tgtcaatgcg gaaagtattg aaaaacaaga
    14881 agatagaagc tattattcaa cgacaagtga catcgtcatt ggacaatatc ctgctgctgg
    14941 agcaacaatt gatggaacag ttaccttgta tgtctccgtt gcatcaacca gaaccagtag
    15001 cgattcttca acaggaagtt ccacaagcac aagtacttca acagatagcg gacaataaag
    15061 atgaataagg ttgggcagat gccgaacctt tttctcttga ttagagagcg tagcttgtgc
    15121 gcggtcccct atgccaaaat tgtttccttc tgtccatcaa gagtgatggc ctaggagtga
    15181 tttgcatagt ttatagtcat gtttagttta ttttgcttgc ttcgttaatt tactttgccg
    15241 tacccaagta cagcctgcat ctcgttgctt tgaactaata tttcctactt tggatggagt
    15301 tcttttactt attttttgtt acaatagtat agaaaggatg gagaagatgc ggaaagttca
    15361 attttttcta ctaatagaaa gtatgatttt tacgatggca gcctttgacg tggtagccaa
    15421 tgaggccagt cggaccctgc tacttttctc tgccttatta ctcgtcattt ggtacttcct
    15481 aggaagaaaa gtcaacagtg ttttactggt cagctcctta tctctattat ttttggtctt
    15541 tgttttaaat cccttcttca ttattgggat tatgctacta gtcgtgtaca tgctgattaa
    15601 tttcttttca cgttatgaaa agagaaacca atatacccac attgttttta gtgactattc
    15661 tctacaggtt caaaaagaga aaaatagatg gtttggcaac cacgaccact ctcaagatag
    15721 gtttggtttt gaagatatta acattgtacg cttgtttggc aatgatgtag ttgatttgga
    15781 taagactgta ttagttggca gagataatat tgttgtaatt cgtaaaacgt ttggacggac
    15841 aaaaattatt gttccaattg atgttgaggt cgcactttca gcaactagta tctatggacg
    15901 agtaagtttc ctgggtgaat catactggga tttgcggaat gaaagtatag cggtcaatag
    15961 ttccgattat caagaatcac acaaacgtgt aaaagtcgtt actaataata tactgggaga
    16021 tgtggaggtg gttcgcgtat gagaaaacgt acctacctac tcctcgcctg gtttgcctgt
    16081 cttattgttt ttgtggtgat tgcttccacc ctcccacttt taaattattc attgttagat
    16141 gttacgctct ggatttcaac ggagcagctc gtgtttactc tcattctact agttattgtt
    16201 ttgacccttt ttctagctgt aatggtacaa actgtcagcc tagcctccac tcaggttatg
    16261 cggacgaagt tacaagctat cttgaagaat aaaagtattc gaacagatac cgaaagtgat
    16321 cagctcttgc tccagttgtc tgataaggtc agaaacctca cgcgtcaggt gcagctggtt
    16381 gacaatcaag atttagtcaa gaaagaagag attgttgagg gagaacggaa acggattgcc
    16441 agggatttgc atgatacggt tagtcaagag ttatttgcaa cgagcatgat tttgtcagga
    16501 ttatcgtcca atctatccac tcttccgcag gaaactttgc aggaacagct gatgctcgtg
    16561 aaagacatga ttgagtctgc ccaaagagac ctacgcatcc tattattaca tctacgccca
    16621 agtgaacttg aaagtaaaac cttggttgaa ggatttgagc tgattttgcg tgaagttagc
    16681 gacaaaagta atattatcgt tcatttccaa catgaagtag aggagttacc gaaactaatt
    16741 gaagaacatc tcttccgcat tgcgcaagaa attatcagta ataccttgcg acatgccaaa
    16801 gccaagcatt tggatgttta cctcttgcag aaggaaacag aacttcagtt gaaaatgaca
    16861 gacgatggta tcggcttcca acaaggggca gatgatgaat taagttacgg tcttcaaaac
    16921 atacgtgagc gggttgaaga catggctgga acgataaaaa ttcgcactgc tccaaataag
    16981 ggagtggcga ttgatattcg tatcccacta ttgaaaggaa aagaagatga atacgattcg
    17041 agtgatgctg gttgacgacc atgagatggt tcgtctagga ttgaaaagtt acttaaattt
    17101 acagccagat gttgaagtag ttgcagaagc tagtgatggc gaggaaggtt tggctaaagc
    17161 attagaggtt aaacccgatg ttgtagtgat ggacttggtt atgcctaaga tgactggcgt
    17221 agaagcaacc ctggccttgc tgaaggaatg gccgcaagcg cagattgtca tcctgacctc
    17281 ctacctagat aatgagaaaa tctatcctgt gctggaagca ggagctcgtg gctatatgtt
    17341 gaaaacgtca agtgctgacg aaatcttagc cgctatccgc aaggtagctc ttggagaata
    17401 tgctattgag acagaagtag agaaaaaagt agagcaccat aaacgccacc cagatttaca
    17461 tgatgacttg acagctcgtg aacgcgaaat cttgacgctg ttagccaagg gatatgataa
    17521 tcaacgaatt gcagatgagt ctttcatttc cctaaaaact gttaagaccc atgtttccaa
    17581 tatcttatcc aaactagctg ttagcgatcg tactcaagca gttgtttatg ctttccagca
    17641 tggtttggtg gcgcaagagg accaatagtg gtataatgaa aattagttaa ttttcaacca
    17701 aaggatagtg gaattatatg gatgcaaaac tcagatataa ggcaaaaaaa ataaaaatag
    17761 tcttttttga cattgacgac acgctacgtg taaagaatac aggctacatt cctgaatcca
    17821 ttcagcaggt tttcaactca ctgaaagaaa agggaatttt gacaggaatt gcgtcaggac
    17881 gaacgcctta tggtttggtg ccagaaatca aggccttaaa gccagacttt ttcgctatga
    17941 ttaacggctc ctacgtagaa gatgccaaag gtcaggtagt gtaccatcag ccaatgcccc
    18001 aaaatatagt agaatctgta ttaaattggg ctaaagaaat tggaatcgaa tatggtatgc
    18061 ttggtagtca aaaagggaca ctttctgcac gaactgaccg cattagtcaa gtaattgact
    18121 tgatttatga aggtttggaa ataaacccaa ctttttataa agaaaatgac atctatcaat
    18181 tgttaacttt cgagaaagat ggtcacgaag tagaacttcc agaagagttg caagcggaat
    18241 tgcgtagtgt tcgttgggat gctatttcat cggacattgt gttaaaaggc tcttccaaag
    18301 caactggtgt tgctaaggtt gttgaaaaac taggcctgaa acctgaaaat gtcctagtgt
    18361 tcggagatgg actcaacgat attgagttat tcgattatgc aggaattagt atcgctatgg
    18421 ggcattcgca tccagaactg caaaagcatg cagattatat cacaaaaaaa gtagaagaag
    18481 atggcatttt tgatgccttg gagaaattag gtatggtaga aaaagaaaaa tatttcccgc
    18541 aattagattt ggaaaatgtt acaggaccag ttgcgcatat caagactaac catggtaagt
    18601 taacagtaaa actctttcct gaaattgcac ccaaaactgt agcaaatttc gtagctcttt
    18661 ctaaagatgg ctattatgac gggattatct ttcatcgtat tatcaaagac tttatgattc
    18721 aaggtggcga tccaaccgga acaggtatgg gtggtgaatc tatttatggt actgcgtttg
    18781 aagatgaatt ttcaatggaa gcttttaatc tcagaggagc cttgtcaatg gccaatgcag
    18841 gaccaaatac aaatggaagc caattcttta tcgttcaaaa ccaaaatttc ccatacaatg
    18901 cgaaagaatt agaacgaggc ggttggccta aagaagttgc agaagcctat gtcaaaaatg
    18961 gcgggacacc acatctggat caacgccaca cagtgtttgg tcatctagtt gatgaagaat
    19021 ccttcgtcgt cttggatgct atcgcagcgg ttgcaacaga ttcagcagat cgtccacatg
    19081 aagatgttgt aattgagacc atcgaaatag aggattaaga tgaaaatcgg agataaactc
    19141 aaggggacgg taacgggtat tcaaccgtat ggagcctttg tacaattaga gaatgggacg
    19201 acgggcctaa tccatatctc ggaaatcaaa acaggttttg ttgataatat ttatgatcat
    19261 ttaaaattgg ggcaagaggt tttggtacag gtagttgact ttgatgaata tactgaaaag
    19321 gctagtttat caatccggac cttggaagaa gaacaacaaa aaattccgcg tcatcatcgt
    19381 tttacaaatg aacggaataa aattggtttt tcccctttag caaaacaact tccgaaatgg
    19441 attgaggaag ctaaaggcta tctcaaagaa cacaaagaaa agaaggtata ggatgcattc
    19501 ctaaccttct ttctttttta atcattgaac tcataaagag ctgttgacaa gtaacgttct
    19561 ccgttatcag gtaagattgc caacactttt tttccagttc ccaactcctt agcgacttcg
    19621 atagcagcgt gaattgctgc acctgaagaa ataccaacta agaatccttc ttttccaccg
    19681 atagcacgac ctgtagctaa ggcatcatcg gatttgacac gaataatgcc atcataggcg
    19741 ctagtgtcca aagtatctgg aataaaacct gccgaaatac cttggatctt gtgcggacca
    19801 ggtgcttcac cagataagac agctgattca tcagcttcga cagcatagat agcaatatct
    19861 ggatttgctg tcttcaaaac atgcgaaaca cctgaaacgg taccaccagt accaacgcca
    19921 gatacaaagg catctaaacc agttgttcca aagtcttcca aaatttcctg tcctgttgta
    19981 tcttcgtgaa cttttggatt ggatggatta gcaaacggaa aggaacccag ccattttttt
    20041 cttcagcaat ctcttttgct ttggcgatag cccccttcat cccttcgcta ccaggagtca
    20101 agacaagctc agctccataa gcttggataa tcttacgacg ctcaacactc atagtttcag
    20161 gcatgacgat aatcacctta taaccttttg ctgctccaac ccaagcaaga ccgataccag
    20221 tgttaccact tgttggctca acaatagtat ctccaggttt gattgtacca gccttctcag
    20281 catcttcaat catagccaag gcgatccggt cttttacaga agatcctggg ttaaaggcct
    20341 ctaatttcac atagacttcc gctgccccct ctggaacgat attattgagt ttaataacag
    20401 gtgtttttcc aactaattga gtaatgtttt gataaatagc catatggcac ctccaaataa
    20461 tgttattata cattatatag tagaaagtca aaaaaggata atataaaaaa actatctcgc
    20521 cgatagcttt ttttaataga caggtacctc aacgattcga gagttagctt tttccgcgga
    20581 tacttttccg tggtaaaagt cagtgagact tgctaaggtt tgttcaagga attctttatc
    20641 tacaaaaatc atggttgaaa cttcagtagt aaactgggca tcaaattctt ccagaccttg
    20701 ctcagctcgc caattggcaa actcttggta ttgggtatag gacatgctaa tggaaatccc
    20761 ttcctgctcc ttaacctcca caaccccgat ttccttgact gcattagcca cgactccagc
    20821 gtaagcacga ataagtccgc ctgccccgag tttgatacct ccaaaatagc gggtaaccac
    20881 cgttgcgaca ttggtcagtt cgtgattttc taaaaccgtc agcattggca caccagcagt
    20941 accagacggc tccccatcat ctgaggaacg cttgatttcc atattttctc caaggacaaa
    21001 agcagagcag ttatgagtag ccttgtaatg ttctttcttg attttgttga taaagtcgcg
    21061 agcttcctcc tcgctggtca ctcgtttcat aaagcagata aatcgtgact ttttaatttc
    21121 ttcctcaaca ataccatctt ctctaattgt tttaaattct ttcataacca aattgtacta
    21181 atttttttaa
//
LOCUS       DASGCC010000019        20937 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.019, whole genome shotgun sequence.
ACCESSION   DASGCC010000019 DASGCC010000000
VERSION     DASGCC010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20937
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.019"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(101..670)
                     /locus_tag="U1404_000490"
     CDS             complement(101..670)
                     /locus_tag="U1404_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002925829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM5347471.1"
                     /translation="MELPMTQAFFPIHTLETVSPELRENLATVKKNNGGYIPNLIGLL
                     ANSPTALETYQTVSGINRRSSLNPTEREVVQITAAVANGCGFCVAGHTAISIKQVKMP
                     DVILQALRQGTPIETDAKLDALARFTLAVIHEKGKVEQPLLEEFFQEGYTAENALDVV
                     LGVSLATLCNYANNLINTPINPELQAYAL"
     gene            complement(824..1519)
                     /locus_tag="U1404_000491"
     CDS             complement(824..1519)
                     /locus_tag="U1404_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347472.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHIEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMEERLGMSGEDICYLGDSFENDVVGAKAANWKAIWFNHRKRVEPTAPYQADKVV
                     TDWDELVEVIQSF"
     gene            complement(1573..3312)
                     /locus_tag="U1404_000492"
     CDS             complement(1573..3312)
                     /locus_tag="U1404_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347473.1"
                     /translation="MTILGFLLKQIRRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSAQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     YGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEEVEDDCDRIL
                     EVEQGQVVFEHVNFSYEENRPVLKDITIRAEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            complement(3312..5039)
                     /locus_tag="U1404_000493"
     CDS             complement(3312..5039)
                     /locus_tag="U1404_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347474.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEMTLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLCIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKATQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENIALGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            complement(5608..5680)
                     /locus_tag="U1404_000494"
     tRNA            complement(5608..5680)
                     /locus_tag="U1404_000494"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5645..5647),aa:Thr,seq:ggt)
     gene            5837..6307
                     /locus_tag="U1404_000495"
     CDS             5837..6307
                     /locus_tag="U1404_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEM5347475.1"
                     /translation="MKLQNLQVGQSYLVKDCLTQDDIRKHLAHLGLKVGEEIRIISKT
                     KTNAIFQVKASRLALDREIIESLVLTEKSATEIINLSEAPIGSSAKVMDIYATGALRR
                     RLMDMGLTKNTQLFLKKVAPLGDPIEITLRGYELTLRKSEAQMIGVQITSEVRK"
     gene            6304..8448
                     /gene="feoB"
                     /locus_tag="U1404_000496"
     CDS             6304..8448
                     /gene="feoB"
                     /locus_tag="U1404_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEM5347476.1"
                     /translation="MTKHIALAGNPNSGKTTLFNLLTGTNQRVGNWPGVTVERKSGTI
                     KKRKHLLIQDLPGIYSLSPYTPEERVARDYLIADQPAAILNVLDATNLERNLYLTLQL
                     LEMGLPIAIALNMTDALKSQGRSINSDQLSYQLGVPVQPISALKKLGISQLLHEVEKI
                     TNQQAEPIYPQYDKQFEAGLAQVIDLLSDSIPNHQKRFYAIKLLEQDQVILDQLQLNA
                     QDMLDLTEIIAILEKIYADDMEAIIVNQRYQFIEKITELVTKDSDKAFNLSDNIDRLV
                     TNRFLALPIFAAVMWLTYFLSIQTVGTMGTDWVNDVLFGELVPGLIQANLDRFEIAGW
                     LQSLVLDGIIAGCGAILGFVPQIFVLFVCLGILEDIGYMSRVAFVMDRIFRRFGLSGK
                     SFIPMLISTGCGVPGVMASRTIENEQDRKITIMTATFMPCSAKLPIISLVAGAFFPDN
                     PWIAPSAYFVGMAAIVLSGMALKKTKQLGGVASPFIMELPSYHLPKLSTVLRYAFDKA
                     LSFIKRAGTIIFVTNIIIWFSSSYNWSLQMVETDESILASIGHSFSLLFAPLGFGNWR
                     ATVAAITGLLAKETVIATFGILYKLGETTEENPELWGLLQQDYTALSAYSFLVFNLLC
                     APCFAAIGAIHREMGEAKWTWIAIGFQTGLAYASSLVIYQIGLVLIHGQLPTVWTFIA
                     IFLIITAIYSLVKKPTNTLPIVTLKTLEKGEY"
     gene            8448..8600
                     /locus_tag="U1404_000497"
     CDS             8448..8600
                     /locus_tag="U1404_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HEM5347477.1"
                     /translation="MPTLILFLIIVILFSLAIRSLIKGKGSCGDCSCDCTIKQEMNES
                     SHHRHP"
     gene            complement(8653..9582)
                     /locus_tag="U1404_000498"
     CDS             complement(8653..9582)
                     /locus_tag="U1404_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5347478.1"
                     /translation="MSNRFFRHFIESLKSLKRNGWMTIAAISSVAITLTLVGLFASVI
                     LNTAKLASDLEQNVRINVYLRANSTDQAETIVNEAGETVANPDYKKVYNQITALENVQ
                     SVTYSSKDEQLQKLTATLGDTWNLFQGDANPLYDAYIIDTTEPQYVKTVAAEIAKIDG
                     VTEVRDGEVETERIFKLANLVRTWGLAATGLLLFTAVFLISNTIRITIISRSREIQIM
                     RLVGAKNSYIRGPFLWEGAWVGLLGAILPSALVYSFYKMIYTSVNASLASQDLSLISM
                     DVFVPGMIGALFVIGIIIGSLGSVISMNRYLKI"
     gene            complement(9575..10267)
                     /gene="ftsE"
                     /locus_tag="U1404_000499"
     CDS             complement(9575..10267)
                     /gene="ftsE"
                     /locus_tag="U1404_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012130521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEM5347479.1"
                     /translation="MGIIEMKDVSKKYGNGTTALRGVSVNVEAGEFAYIVGPSGAGKS
                     TFIKLLYREEKLDKGSLKVGKFDLAKIKKRDVPLLRRSVGVVFQDYKLLPKKTVFENI
                     AYAMEVIGEKPRNIKKRVMEVLDLVGLKHKIRSFPNELSGGEQQRIAIARAIVNNPKV
                     LIADEPTGNLDPENSWEIMNLLERINLQGTTILMATHNSQIVNTLRHRVIAIEDGRVV
                     RDEAEGEYGYDE"
     gene            complement(10410..11505)
                     /gene="prfB"
                     /locus_tag="U1404_000500"
     CDS             complement(join(10410..11432,11434..11505))
                     /gene="prfB"
                     /locus_tag="U1404_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775232.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEM5347480.1"
                     /translation="MDTAEIRQKIEELGKKLTSFRGSLDLEGLEEEIAILENKMTEPD
                     FWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLDFLAEDESVRDELVEKLVE
                     LDKTMTAYEMTLLLSDPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNAKGFIV
                     ETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVE
                     VMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDRT
                     QYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWGSQIRSYVFTPYTMVKDH
                     RTGYEVAQVDKVMDGDLDGFIDAYLKWRIS"
     gene            complement(11540..12667)
                     /gene="queG"
                     /locus_tag="U1404_000501"
     CDS             complement(11540..12667)
                     /gene="queG"
                     /locus_tag="U1404_000501"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEM5347481.1"
                     /translation="MNIKEEIIKLSQEIGISKIGFTTADDFAYLEKSLRASQEEGRSS
                     GFEHKNIEERIRPKLSLESAKTIISIAVAYPRHLPVKPQKTQYKRGKITPSSWGLDYH
                     YILQDKMERLARGIEKLTDGLEYKAMVDTGALVDTAVARRAGIGFIGKNGLVISKEFG
                     SYMFLGELVTNLDIEPDQPVDYDCGDCNRCVAACPTSCLLGDTTMNARRCLSFQTQDK
                     GMMDLEFRKKIKTVIYGCDICQICCPYNKGISSPPVVEIDPDLAEPELIPFLDLSNGQ
                     FKEKFGMIAGSWRGKNILQRNAIIALANSNDRSAIPKLLEIIDKKQNPVYMATAIWAL
                     GQLVKQPNDEMVSFIAGISSDNDDVIAEQTAFLNMVKDLQM"
     gene            complement(12708..13196)
                     /locus_tag="U1404_000502"
     CDS             complement(12708..13196)
                     /locus_tag="U1404_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5347482.1"
                     /translation="MQTKKMSIFLFFAYLLLLTWMIVFKMDLSIVYGRYGYASINLIP
                     FAGTAVYDGVLDFPEILFNIVSFIPFGIYMEMLFRKASWVANLCLIMLVSLCFEVLQY
                     LLLLGVADITDLLANGLGGAIGINIMYVLTSIWREKAYVRMNIFCFVLTFFVILITYL
                     AM"
     gene            complement(13365..13781)
                     /locus_tag="U1404_000503"
     CDS             complement(13365..13781)
                     /locus_tag="U1404_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEM5347483.1"
                     /translation="MNYLQNYILSKSSYLPSDKLFILQKELEDLDNEALNVLMMVEMH
                     QPLVALILAIFFGEFGVDRFYVGNKELGFAKLIAFAVSFVTLFILIGFLLFLGLYLWK
                     FIDCFLIMRACKEANFERLMLQIHQYKAFQHSNQTF"
     gene            13915..14091
                     /locus_tag="U1404_000504"
     CDS             13915..14091
                     /locus_tag="U1404_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347484.1"
                     /translation="MRVIIHYPKTIKQLSSQKLPLLVDGKIAGTVTQGKILSLPITQP
                     SVILSIRVKDGDRV"
     gene            complement(14510..17197)
                     /locus_tag="U1404_000505"
     CDS             complement(14510..17197)
                     /locus_tag="U1404_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5347485.1"
                     /translation="MSKEQKRDLFYTQGEEQVLSSMESSLDGLSSDEASKRLADYGRN
                     ELDEGEKRTLLAKFLDQFKDLMIIILIAAAILTVITEGSHGLTDAIIILTVVILNAAF
                     GVYQEGQAEAAIEALKNMSSPVARALRDNHVVEVDSKDLVPGDIVLLEAGDVVPADMR
                     LLEANSLKIEEAALTGESVPVDKDLSAVLAEDAPIGDRVNMAYQNSNVTYGRGLGVVT
                     NTGMYTEVGHIAGMLANADETDTPLKQNLHQLSKVLTYAVLVIAAVTMAVSVFVRGEG
                     ILPALMTSVALAVAAIPEGLPAIVTVVLSLGTQVLAKRNSIIRKLPAVETLGSTEIIA
                     SDKTGTLTMNQMTVEKVYTNGQLVDAKEALDASNTTLRVMNFANDTKVDPTGKLIGDP
                     TETALVQFGLDQNFDVREVLVSEPRVAELPFDSTRKLMSTVHQQAAGNFFVAVKGAPD
                     QLLKRVTQIEENGTIRPITDADKQAILATNKDLAKQALRVLMMAYKYVDAIPELESDV
                     VENDLVFSGLVGMIDPERPEAAEAVRVAKEAGIRPIMITGDHQDTAEAIAKRLGIIDP
                     NDTEDHVFTGAELNELTDEEFQKVFKQYSVYARVSPEHKVRIVKAWQNDGKVVAMTGD
                     GVNDAPSLKTADIGIGMGITGTEVSKGASDMVLADDNFATIIVAVEEGRKVFSNIQKT
                     IQYLLSANTAEVLCIFLATLFGWDVLEPVHLLWINLVTDTLPAIALGVEPAEPGVMQH
                     KPRGRNSSFFSGGVLSSIIYQGILQTALVLGVYGFALLYPEHAGDNHAIHADALTMAY
                     VTLGLIQLVHAFNVKSVYQSIFTVGPFKNKLFNWSIVAAFLLLMATVVIPGFNTFFKV
                     SILTPTQWMVTVIGSGLMVVVVEIVKFVQRKLGLDEKAI"
     gene            complement(17407..17793)
                     /locus_tag="U1404_000506"
     CDS             complement(17407..17793)
                     /locus_tag="U1404_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HEM5347486.1"
                     /translation="MDIHLRNEIDLDGQIEVVDQQFQVEVKEKDGNLYLIYSNDEAEK
                     VVIKCDEEELVMTRFSTPKSIMRFISGKEAIVTIPTPLGIQHFVTDTKRYQLNRSDQS
                     VQLQYELKGLENQQLFASYDLEISWK"
     gene            complement(17805..18692)
                     /locus_tag="U1404_000507"
     CDS             complement(17805..18692)
                     /locus_tag="U1404_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM5347487.1"
                     /translation="MNNQIILLTIQVFIVALILWMLYTILSYAKKHDISLKEKFWTGF
                     GIGYVTDLLDTLGIGTFATTTTMFKLTKLVEDDRKIPATMTTAHIIPVLVEALLFITI
                     VEVDMVTLIAMAAAAFTGAFVGAKVTQKWDTKKVQRILGILLIIAACFMVYRMITNPG
                     AELTNEVKGLTGWKLAVGIAFDFMVGMLMSMGLGNYAPELIFFSLMGISPAVALPVMM
                     LNAAMIMTAGAKQFIQSGRVNWPGVPGIVVGGVLGVLTAAFFLSNLDINNLKILVVFI
                     AAYTGFTLLRSSFVTRIKK"
     gene            18791..20104
                     /locus_tag="U1404_000508"
     CDS             18791..20104
                     /locus_tag="U1404_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM5347488.1"
                     /translation="MIEKVFRDPVHNYVHVDHELIYKLINTKEFQRLRRIKQLGTTSY
                     TFHGGEHSRFSHCLGAYEIARRITQKFEDKYPQIWDTNESLLTMVAALLHDVGHGAYS
                     HTFERLFDTDHEEMTCAIITSPETEINALLKQVSPEFPDKVASVIKHTYPNKQVVQLI
                     SSQIDVDRMDYLLRDSYFTGANYGEFDLTRILRVIRPTENGIAFKESGMHAVEDYVLS
                     RYQMYMQVYFHPASRSMEVLLQNLLNRAKLLYTSEQEFFARTSPRLLPFFEHRIRLTD
                     YLSLDDGVMNTYFQSWIDGPDRILSDLAQRYINRKVLKSITFKAEEEEALDRLRSLVA
                     DVGFDPEYYTAIHHNFDLPYDIYRPNAEKKRTQIEIYRKDETLVELSSLSPIVHSLSG
                     TIHGDSRFYFPKEMLEETGIFAPQIADFNSHIHNDHFIIGESNEH"
     gene            20094..20903
                     /gene="yidA"
                     /locus_tag="U1404_000509"
     CDS             20094..20903
                     /gene="yidA"
                     /locus_tag="U1404_000509"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM5347489.1"
                     /translation="MSIKLVAIDIDGTLLNSQHQITAEVHSAIQESKKAGVKIVIATG
                     RPISGVQAILEELNLTEAGDYVITFNGGLVQDAATGEDIVKDTLTYEDYLDIESAARK
                     LKLPMHASTKEGIYTANRNIGKYTIYESTLVSAPIFYRTPEEMADKEIIKTMMVDEPE
                     ILDAAIPLLPTSLTEKYNVAKSAPFYLEITPKTVNKGQAIIHLAEKLGLTMDQTMAIG
                     DQENDRPMLEVVGNPVVMENGNPELKKIAKYITKSNDESGVAHALREWVLK"
BASE COUNT         6473 a         4821 c         3759 g         5884 t
ORIGIN      
        1 aaatgtatat taggaaaatc acacttggtt aattcaaaaa aactagttag gataatgtaa
       61 acgtcctaac tagtttgcga tacatattct gctggaactc ctacagagca taggcctgta
      121 attctggatt gataggagtg ttgatgagat tgttggcata attacaaaga gttgcaagac
      181 tgactcctaa caccacatcc aaggcatttt cagccgtgta gccctcttgg aaaaattcct
      241 ctagcaaggg ctgttcaacc ttgccttttt catggataac agccagagta aatcgagcga
      301 gagcatccaa ttttgcatcc gtttcgatgg gagttccctg gcgtagagcc tgtagaataa
      361 catcaggcat cttaacctgc ttgatagaaa tagccgtatg acctgccacg caaaatccac
      421 agccattggc aacggcagct gtaatttgta ccacttcacg ctccgtcgga ttcagactac
      481 tacggcgatt gataccacta acagtttggt aggtttctag ggctgtagga gaattggcta
      541 aaagaccgat gagattagga atataaccgc cattattttt cttgacagtc gcaaggtttt
      601 ctcgtaattc tggactaaca gtctctagag tatggatagg aaagaaagct tgtgtcatag
      661 gtaactccat ttcaaaaaat ttcatagagt aggaataaaa atctgcttgg attcacacct
      721 atacttctat gcttgcattt tatactatca taaagacagg catcctgcta atatatttta
      781 cctatcacac ctataaaaaa ttgataatcc cttgtagaaa ccactagaaa gactggataa
      841 cttcgaccag ttcatcccaa tctgtcacca ctttatctgc ctgatacgga gctgttggct
      901 ctactctctt tctatgatta aaccaaattg ccttccaatt cgcagctttc gctcctacca
      961 catcattttc aaacgaatcc cctagataac aaatatcttc gcctgacatc cccaaacgtt
     1021 cttccattag ttgaaaaata gcaggatttg gctttgtgat accaacttgt ccagaaatta
     1081 ggacatgttc tagctcaaac caattaacta accccatcgt gcgtatcttt ctcaactgat
     1141 gtctataagg tccattcgta ataatcccca ttgcaattcc ttgcgcctga caccatgaaa
     1201 atatttctgg aaacactgga ctgagctcta tctgcccttg aaaataatca taatctattt
     1261 gaatagctaa ggctgttgca tcagacacct gatacccaaa atctgccaaa gcatgtttca
     1321 tccgataaat atgactgtct ttcagactca tctttccaat tgctgtcgct tcaaatactt
     1381 catccgcata tctgcgaaag gaaaggtaga gtggttcaat ttgctccctt gctacttcaa
     1441 tgtgtctttc caaagcacgt tcaaacggtt gaatctgatc ataaagcgta tcatctacat
     1501 caaaaattaa ggctttcatg agtcaattat agcaaaaaat tccagccaaa gcttggaatt
     1561 tttaactgct tattacacct ttgcttgaat ctcatgcatt tgagcatata ctccaccacg
     1621 tgcaaccaat tcttcatgct tcccatgttc aataattcgg ccttgatcta agacaagaat
     1681 ctggtctgca ttttgaatgg tagaaagtcg gtgggcaatg ataaaggttg tccgaccttc
     1741 tttcaccact tccatagcat gttggataat ttcttccgtc tccgtatcaa tatgagaagt
     1801 tgcttcatcc aatatcagaa ttttaggatc agagtagagt gtccgcgcaa aggcaatcaa
     1861 ctgacgttcc ccacttgaaa aggccgcccc cttctcaaca accggttcat caatcccttt
     1921 ctctaagcga gatagcatag gccctgcacc aactttttct aacgcctgca tgattcttgt
     1981 tctatctgct tcctcttcat tcatggaaac attgctagca atcgtccctg taaagagata
     2041 gggatcttgc aaaacaatcc ccatgtgact gcgcaggctc tcacgagaat aatcacggat
     2101 gtttttccca tcaatcagta cacgtccctc ctgtggatca tagaaacgat agaggaggtt
     2161 cataatagaa gacttaccag acccagtatg cccaaccaga gcaactgttt ctcctttttc
     2221 tgcccgaatg gtaatatctt tcaaaactgg tctgttttct tcatagctaa agttcacgtg
     2281 ttcaaacacg acttgccctt gttcaacttc caaaatacga tcacagtcgt cctccacctc
     2341 ttcttctaga agggccatta gacgcttacc tgtttcaaac gagcgaagca tatttgggaa
     2401 ctgttgaacc agcgctccca aagcaatgaa gactccttcg atatagttga cataaacaaa
     2461 gagtttccca gctgtaactc catactgtcc cgcaagaaac tgatagccga ctaccgttaa
     2521 aatcgcagca atgaccaaat tttgaagaaa accactcaga ttccacgtgg caagagactg
     2581 ggcccagata atcttattat ctgcccgacg catcttgtca gcagtcactt caaattcttt
     2641 catgatgcgc tcttcttgtc caaaaagttg aatcaaactt gcaccattca tggtctcatt
     2701 cacctgcgta ttgacgtcac tccttgcatc ataaaaatcc ttcatcggct tgtctgtcat
     2761 tttcttgtaa gcaaattgaa taccgatata gagtggtatc aagagtaaca tcagccaacc
     2821 aagactccta ttcatgtaaa ataggacacc gtatgtaaag agcaaacgaa caatattgtt
     2881 aaaggcatta actaaggtcc cataaaattg tgtccgcaga gtttctgtat cattgacaat
     2941 tctagttgca atttttccag cgggcttatc atcaaaataa gaaataggca accgttgcat
     3001 aacatcataa gcttgattac gtagattttc agcaatacga ttggcgcaat gcatgagtag
     3061 acgcatagat aagtagaagc caatagctcc cagaataatc attcccatgt attgagctga
     3121 ctggtttaag aaaacagctt catcaaaagg caaacccttg ctcaaatccg taatcggccc
     3181 atcaatcgcc tgctgaatca gtagaggagc caatcgaacc atggtcgaag ccaatagata
     3241 gaagccgaca gctactataa atagccactt aacacgacgg atttgtttta ataaaaaacc
     3301 taaaatagtc attactctcc tccttcctga ctttgttgtc gttggtattg ttcatagtac
     3361 caacctcttt gggcaagcaa atcagctgga cgcccttcct caacgatacg cccctcatcc
     3421 aagactagta cccagtctgc atggttgaca gcagatagac gatgggtcac gatgacattg
     3481 gttttgcctg cacgttcttt ttgaatattt tggataatct ggcgttctgt cctagcatcc
     3541 actgccgaca aagaatcatc tagaatcagc aaatctggct ctcgcaggaa agcacgggca
     3601 atggaaatcc gttgtttctg accgccagaa atagacacac cacgctcacc aatcatggta
     3661 tcaagaccat cagtcatccg ttttaaatct tgactaaaag ctgctgtggc aatggcttgt
     3721 tcaatctcct cagagctact agctactttc ccaagggcaa tattttctcc aacagacctt
     3781 gaaaacaaaa tgtgttcttg gggaacatag ccaatttttt cctctatact agaacgttta
     3841 aagtctaaaa cagattgatg attgatgaaa aaatttccct gaccaatcgg atactggcgt
     3901 aagaattggc gaaccaaggt cgtttttccc gaaccagttt tcccaacgat acctacagtt
     3961 tgccctgctt tcagtgtcca attgatgtcc tgtaggctgg ctctttccgc ctgtggataa
     4021 ctaaagctat aatttttgaa ggaaatacta gacagctctg caatttcctt agaaccatca
     4081 gcctccaaat catcacccgt ctcaatcagc tcttgcagtt tttcgaaaga tgtcttacca
     4141 gtctgataaa caaggatgaa atctgccagt gtccaaaacg gctccaaaag cgaaccgaca
     4201 tacaattgaa gggcaattac ttgtcccaag gtcagttgcc ctgctttcac ggcttgtgcc
     4261 cccatgagaa gcacgaaaat agtagacaat cccaaacaga ctgtggctaa tggattatac
     4321 aatgattgca aggaagtgat gcgatcccca ccttgagcca attgcttggt acgagcttga
     4381 aattgagcct tttgagttgc ttttttacta taagcccgag tcactcgaat gccttcgatg
     4441 acctccaaaa cttcattatt gagctgggct acagcttctc tattggcatc aatcgcctta
     4501 tcttgttttc tcccgataaa aaatatacat agtgtcatga acagcatcgg tagtaaagct
     4561 actagcgaaa ttttccaatc aataaagaac atcgtgggaa tgataaaagc caacataccg
     4621 cctgcataga cgacaatcat aagaccgtaa cccaccatct ccatcaggcc atccacatcc
     4681 gttgaaaaac gagtcatgac atctcctgag cggaattttt cataaaatgg agtccgcatg
     4741 gtcactaatt ttttaaaggc acgttgctgc atatcaaact tgaaattgac agaagcctga
     4801 aataatttca gatgccaaat gaaggctgtt gcatagttca gtactgttac caataacaat
     4861 aaggtcatct cctgaaccaa tatggcctgt gttaattcat tcttggttag tatatctacc
     4921 atccgctgaa tgatttgcgt tggtagcaaa agtgtggcgt cataaataat caaggtcaca
     4981 gcaaccaata gatagagcca cttatgacgc ttgatatagt caaaaattaa tcgaaacata
     5041 tatctccttt acaaatctat aacctatcat ttgccgcttt attcaataag caacaattga
     5101 tagacgttat actcaatgaa aatcaaaagt agcctagaaa acgatgtcga agatagaact
     5161 ggagttcatc aaggcaagtt gacaacggat aattttgatt ttcgaagagt attacctttc
     5221 taagcgcaca aaaaagccta gggaagcatc tcactccacc taggcttgcg taagtccaca
     5281 aaaatagacc agctcttgaa catagtcgac aatttttatc acaccatacc cacagtgctt
     5341 gattgtctca atgtttcaaa atatagccca cgaaaaacga caaaagttca tcaatgagct
     5401 ttgttttcct gcttagaaag gagtgtatga taaaaaatag cttgctgaat aacaagttgc
     5461 ttgttcattt gttttactcc tttcatattt ctaagcccta ttctaccata ataaacattc
     5521 atgtcaaggg attttttgac aataagggcg aatttaggac aaaaataaga aaaaccttgt
     5581 caaacaaggc ctttcgatag tattttatgc tagttgccgg gattgaaccg gcgacctcat
     5641 ccttaccatg gatgcgctct accgactgag ctaaaccagc agtacttgac tagtatatca
     5701 tatctctaaa aaaagtcaat ggattttttg gaaatattga gaaaaataaa gagaaaataa
     5761 gccattccta aaaattgtct gacactttta aggaattgtg ctatactatt gttataaaaa
     5821 tcacaaagga aacgatatga aactgcaaaa ccttcaagtt ggacaatctt atttagtcaa
     5881 agattgccta acgcaagatg atattcgtaa acacttagcg cacttgggtt taaaagtcgg
     5941 agaagagatt cgcatcattt caaaaaccaa gaccaatgca attttccaag tcaaggcaag
     6001 ccgtctagcc ctagacagag aaattattga atctctggtt ttaacagaaa agtcagctac
     6061 ggaaataatc aatctatctg aggcacctat tggtagctca gccaaggtca tggacatcta
     6121 tgcaacaggt gcactccgtc gtcgcctcat ggatatggga cttacaaaga acacacagct
     6181 atttctcaaa aaagtcgctc ccctaggcga tccaatagaa attaccttga gaggatacga
     6241 gctgacacta cgcaaatccg aagcgcaaat gattggtgtt caaatcacaa gcgaggtgag
     6301 gaaatgacaa aacacatcgc ccttgcagga aatccaaata gcggaaaaac aactcttttc
     6361 aacctcctaa caggaaccaa ccaacgtgtt ggtaactggc ccggagtcac cgttgaaaga
     6421 aaatctggaa ccatcaaaaa gcgaaaacat ttactaattc aagatttacc aggtatctac
     6481 tcgctgtctc cctacacacc agaagaacgg gttgccagag attatttgat agcggaccaa
     6541 ccagctgcta tcctcaacgt ccttgatgca acaaacttgg agcggaatct ctatctgacc
     6601 ttgcagttat tagaaatggg ccttcctata gctatcgccc tcaatatgac agacgccctg
     6661 aaaagtcaag gtcgctcaat aaacagcgac cagctctcct atcaactggg agttcctgta
     6721 cagcctatca gtgcactaaa aaaactaggt atatcccagc tcctccatga agtagaaaaa
     6781 attaccaatc agcaagccga gccaatctat cctcagtatg ataagcaatt tgaagccggt
     6841 cttgcccaag ttattgacct attatcggat tccatcccaa atcatcaaaa acgcttctac
     6901 gccattaagc tactcgaaca agatcaagtc attctagacc aattgcaact aaatgcacaa
     6961 gacatgcttg atttgaccga aatcattgcc attttggaaa aaatttacgc agacgatatg
     7021 gaagccatta tcgtcaatca acgctaccaa tttatcgaga aaatcacaga actggtcaca
     7081 aaagacagcg ataaggcttt taacctgtct gataacatag accgacttgt taccaatcgt
     7141 tttcttgccc tccctatctt tgcggcagtc atgtggctga cctacttcct gtctattcaa
     7201 acggtaggta caatggggac tgactgggtg aatgatgtcc tcttcggaga gcttgttcca
     7261 ggccttattc aggcaaatct agatcgattt gaaatcgctg gctggctaca atctctggtc
     7321 cttgatggca ttattgcagg atgcggagcc attctaggtt ttgtaccaca aattttcgtc
     7381 ctcttcgtct gcttgggaat cttggaagac atcggctata tgagccgagt cgcctttgtc
     7441 atggatagga tttttagacg ttttggtcta tcaggcaaat cctttattcc catgttgatt
     7501 tccacaggct gtggcgttcc tggagtcatg gcaagccgga ctattgaaaa tgaacaggac
     7561 cgaaaaatca ccattatgac agcaaccttc atgccctgtt ctgccaaact tcctatcatt
     7621 tcactggtag ccggtgcttt ctttcctgac aatccttgga ttgctccaag cgcctatttt
     7681 gtcggtatgg ctgccatcgt cctatccgga atggcactaa aaaagaccaa gcaacttggt
     7741 ggagtcgcaa gcccctttat catggaatta ccatcttatc acttaccaaa actcagtacg
     7801 gttctccggt atgcattcga taaggcactt agttttatca aacgagctgg taccattata
     7861 tttgtgacca acatcattat ttggttcagc agttcctata attggtcttt acaaatggta
     7921 gaaacagatg agagtatctt agcctccatt ggacacagtt tttctctcct ctttgcccca
     7981 cttggtttcg gaaattggcg agcaactgtt gcagccatta caggtctctt agccaaggaa
     8041 accgtcattg ccacctttgg tatcctctat aaattaggag aaacaaccga agaaaatccc
     8101 gaactatggg ggcttttaca acaagactat acagcgttat cagcctactc cttcctagtc
     8161 ttcaatctcc tctgtgcccc ttgttttgcg gctattggtg ccattcaccg tgaaatggga
     8221 gaagccaagt ggacatggat tgctatcggt ttccaaacgg gtttagccta tgcaagtagt
     8281 ttggttatct atcagattgg tcttgtactt atccacggac aattaccaac cgtctggaca
     8341 tttatcgcta tctttctaat tatcacagcc atctacagcc tagtgaaaaa accaaccaac
     8401 actcttccaa tcgtcacgct aaaaacatta gaaaaaggag aatattaatg cccacactta
     8461 tcctctttct catcatcgtc atcttatttt ctcttgcgat tcgcagtctc atcaaaggaa
     8521 aaggatcctg cggagattgt tcctgcgact gtactattaa gcaagagatg aacgaatctt
     8581 ctcaccatag acatccataa caaaaaggtc tgcctcatta ttgtgcagac ctttttacat
     8641 gtagcttgtc tattaaattt ttaagtagcg gttcatggaa atgactgatc ccaaggaacc
     8701 aataataata ccaattacaa aaagtgcgcc aatcattcct ggaacaaaga catccatact
     8761 aatcagagac aaatcttgac tagcaagact agcatttacc gaagtataaa tcatcttata
     8821 aaaagaatag actaaagcag aaggcaaaat agctccgagg agacctaccc aggcaccttc
     8881 ccagaggaat ggtccacgga tataactgtt tttagcacca accagacgca taatctgaat
     8941 ttcacggcta cgagaaataa tggtaattcg aatagtattg gaaatcaaga aaacagcagt
     9001 aaagagcaat aagccagttg ctgccaatcc ccatgtacga actagattag ctaatttaaa
     9061 aatacgttcc gtttcaactt ccccatcccg tacctctgta acaccatcaa ttttagcaat
     9121 ctctgctgca acagttttta catattgcgg ttcagtcgta tcaatgatat aagcatcgta
     9181 aagtggattg gcatctcctt ggaataggtt ccaagtatct cccaaggtag ctgttaattt
     9241 ctgtaactgt tcatccttac ttgaataagt gacagattgt acattttcta aggctgtaat
     9301 ctgattatac acctttttat aatctggatt agctaccgtc tctcctgctt cgttcacaat
     9361 cgtctcagct tgatcggttg agttcgctct caaatacaca ttgatgcgta cattctgttc
     9421 caaatccgaa gcgagctttg ctgtgttcaa aataactgaa gcaaatagac caaccaaggt
     9481 aagggtaatg gctacagatg aaatggctgc aatcgtcatc caaccatttc gcttcaaact
     9541 cttcaatgac tcaataaagt gtctaaaaaa tcgattactc atcgtatcca tattctcctt
     9601 ccgcttcatc acgtactaca cgaccatctt caatcgcaat aacacgatga cgaagtgtat
     9661 ttacaatctg actattgtgt gtcgccatca aaatcgttgt cccctgtaag ttaattcgct
     9721 ccaatagatt catgatttcc caagagtttt cagggtccaa gttaccagtt ggttcatcag
     9781 caatcaatac tttaggatta tttacaatgg cacgggcaat agcaatccgc tgttgctcac
     9841 cacctgaaag ttcatttggg aaagaacgaa ttttgtgctt caaaccaacc aaatctaaaa
     9901 cttccattac acgtttcttg atattccgtg gtttctcacc gataacttcc atcgcatagg
     9961 caatattttc aaagacagtc tttttaggta agagtttgta atcttggaag accactccta
    10021 cactacgacg tagaagagga acatctctct ttttaatttt tgcaaggtca aacttaccaa
    10081 cctttagact ccccttatcg agcttttcct cccgatacaa gagtttgata aaggttgact
    10141 tacctgcacc agaaggacct acaatgtagg caaattctcc cgcttcaaca ttgactgata
    10201 ctccgcgaag ggcagtcgtt ccgtttccat atttcttgga aacgtctttc atttctatta
    10261 ttcccatagg atttcctgtc ttagacagtc ctttctttag atttgagaac gtttttttca
    10321 aaatacagtc cgtattctct aaaaaaactt ccttgatgag cgaaaaacta tctcttattt
    10381 acaagcactt cacttgtaaa tacaggttct tagctaattc gccattttaa ataagcatct
    10441 ataaagccgt ccaagtctcc gtccataacc ttatcgactt gagccacctc ataaccagta
    10501 cggtggtctt ttaccattgt ataaggtgta aagacataag aacgaatctg acttccccaa
    10561 gtgatctctt tcttgtcacc cttaagtgag tctacttctg ccgctttctt ctcctgctcc
    10621 aattgataca atttagcctg caagagtttc attgcacggt ctcggtttcc atactgagta
    10681 cggtcaactg tggactgagt cacaatccct gtcggaatgt gcgtcaatcg aacacccgtt
    10741 gaaaccttat tgacgttctg tccaccagca cctcctgacc ggaaggtatc catcttcact
    10801 tcatcatctc tgatttcaat ttcaatggta tcatccaact caggcattac ctccacagat
    10861 gtaaaggaag tatgacgacg cttagctgag tcaaaaggtg agatgcgcac caaacgatga
    10921 acacccattt ctgacttaag caagccatag gcgtttggac cagtaaagct tagagtcaca
    10981 gacttaatac ctgcctcatc accagcttga taatccaatg tttctactat aaaacctttg
    11041 gcatttccat aacgctgata catccgcagg agcatttctc cccagtcttg tgcctcggta
    11101 ccacccgaac ctggatggat ttccaagata gcgttattgt gatcataggg gtctgataag
    11161 agcaaggtca tttcgtaagc agtcatggtt ttgtccaatt ccactaactt ttcaaccaac
    11221 tcatcccgca cagactcatc ttctgctaga aaatctagca aaatttcaga ttcatcatat
    11281 aaatccaaca tctgatggaa atttccataa gtatttttta attcattcaa ctcctgagac
    11341 gtcttctggg ctgccaaatt atcattccag aaatctggct ccgtcatctt gttctcaaga
    11401 atggcaatct cttcttccag accttctaag tcaaagagac cccctaaaag aagttaattt
    11461 tttgccaagt tcttcaatct tttggcgaat ttctgctgta tccatataca cctcattttt
    11521 attcataatc tttattatat cacatttgca agtccttgac catgttgaga aaggccgttt
    11581 gctctgctat gacatcatca ttgtctgatg aaatacctgc gataaaggaa accatctcat
    11641 cattgggctg tttaacaagt tgccccaagg cccagatcgc cgtcgccatg tagacaggat
    11701 tttgtttctt atcgatgatt tctaagagtt tgggaatggc agagcggtca ttgctattag
    11761 ctaaggctat gatggcatta cgctggagaa tatttttccc ccgccaagaa ccagcaatca
    11821 taccaaattt ttccttgaat tgtccatttg acaagtccaa gaatggaatc agctcaggct
    11881 cagccaaatc agggtcaatc tccaccacag gtggactgga aattcccttg ttgtaaggac
    11941 aacaaatctg gcaaatatca caaccataga tgaccgtctt gattttctta cgaaactcca
    12001 agtccatcat ccccttatcc tgggtctgaa aggacagaca gcgacgggca ttcatggtcg
    12061 tgtcacctaa tagacaagac gtcggacagg ctgcaacaca gcgattgcaa tcaccacaat
    12121 cataatctac tggttgatct ggttcgatgt ccaggttggt cactaattct cctagaaaca
    12181 tataggaacc aaattcctta gaaatgacta gcccattctt cccgataaag ccaattcctg
    12241 cacgacgagc gaccgctgta tccaccaaag ctcctgtatc taccatagcc ttgtattcca
    12301 aaccatccgt cagtttctca attccccgtg ccaaacgctc catcttatct tgcaagatat
    12361 agtggtaatc aagcccccat gaactagggg taatcttccc acgtttgtat tgggtcttct
    12421 gcggtttgac aggcaaatgt cgaggataag ctaccgcgat agaaatgata gtttttgcag
    12481 attctaacga cagtttggga cggatacgtt cttcaatatt cttgtgttca aatcctgacg
    12541 aacgcccctc ttcctgacta gcacgaagtg atttctccaa ataagcaaaa tcatcagccg
    12601 ttgtaaaacc aatcttcgag attccgattt cctgagataa tttaataatc tcttccttaa
    12661 tattcattat attcatttta gcaaactttg gatagattta gcaagaccta catagctaaa
    12721 taagttatta atataacaaa aaacgttagc acaaaacaaa aaatattcat acgaacatat
    12781 gccttctccc gccaaatact ggtcaagaca tacatgatat taataccgat tgctccccct
    12841 aagccgttag ccagtaaatc agttatatct gcaaccccaa gtaaaagaag atattgcaga
    12901 acctcaaagc agagactcac taacataatc aaacatagat tagccaccca tgatgccttg
    12961 cgaaatagca tttccatata aataccaaag ggaataaaac ttacaatatt aaatagaatt
    13021 tctggaaaat ccagcactcc atcatagacc gctgttcctg caaacggaat taagtttata
    13081 ctagcataac catagcgtcc atatacgatg ctcaagtcca tcttaaagac aatcatccaa
    13141 gtaagtaaaa ggagataggc aaaaaataaa aatatactca ttttctttgt ctgcatagaa
    13201 attctcctct caactagcat attttatcat tatatcataa atgctgttct ataaaatgtc
    13261 acttctgtga caaagctcgt tccatattac aagtacttta cagcctacta aaaacagaaa
    13321 aggaagacac tgccaagcct ccccttattc ccaaaaatat cttattaaaa tgtctgattg
    13381 ctatgctgaa aagccttata ttgatggatt tgtagcatca aacgctcaaa gttcgcttcc
    13441 ttacatgctc gcatgattaa gaagcaatca ataaacttcc acaaataaag tcccaaaaat
    13501 aacaagaacc caatcaagat aaatagcgta acaaaagata ctgcaaaagc aatcagcttg
    13561 gcaaatccca attctttatt cccgacataa aaacggtcga caccaaactc accgaagaaa
    13621 atagccaaaa taagagcgac aagaggttga tgcatctcaa ccatcataag aacgtttaaa
    13681 gcctcattat ctaaatcttc tagttctttt tgcagaatga ataacttatc agatggcaaa
    13741 taactgcttt tacttaaaat ataattctga agataattca tataaactcc tacctcttca
    13801 aaattatagc agtttcttat tcttcaagca agcctgtagg ggaaaacagc gtcagaaatc
    13861 gtttacattt tttctttttt tgctataatg aaactagatt acaaggaggt tcatatgaga
    13921 gttattattc attacccaaa aactatcaaa caactatcct cccaaaaact tccgctcctg
    13981 gtagatggaa aaattgctgg gacagttact caaggtaaaa ttctaagctt accaattaca
    14041 caaccatctg ttatactaag cattcgagtt aaagacggcg acagggtcta aataatatag
    14101 tcgaatgaat tagctttcag acaaggaact gaggcgcagg ctgtaatgaa gtacggcaag
    14161 gcgaaagtga cgatgtatca aagctaattc agatgactat ggaaaatagc aggtacttca
    14221 ctctccacta tttcagcttg gctatcgtac caatcgcctt actgtttaac ttaccaactc
    14281 ttgtcaaaac catcctcctc atactagcac tagccattac tttattggga caagaaatct
    14341 tcccaaaata cattatcagt atagaaaaaa gctcagacca ctaaatctga gctttttcaa
    14401 atgatatagt cttcagtttg cttttagtac aaggcaacga gtcgcaggct gtaatgaagt
    14461 acggcaaggc aagttaacga agtaataaaa gataagctga ataactatat tagatagctt
    14521 tttcatccaa tcccaactta cgttgaacaa atttaacaat ttctacaacg acaaccatga
    14581 gacctgaacc gattactgtt accatccact gagttggtgt caagatagat accttgaaga
    14641 aggtattgaa tcctggaatc acaacagtcg ccatcaagag caagaaggca gctacgatag
    14701 accagttaaa gagtttgttc ttgaatggac caacggtaaa gatagattgg taaacagact
    14761 taacgttgaa ggcatgcacc aactgaatca atccaagagt aacatatgcc atcgtaagag
    14821 catccgcatg aatggcatgg ttatctccag catgctctgg gtaaagaagt gcaaaaccat
    14881 atacgcccaa gacaagtgct gtttgaagga taccttgata gataatcgaa ctcaagacac
    14941 cacctgagaa gaagcttgag ttacgaccac gaggtttgtg ctgcataaca cctggttcag
    15001 caggttcaac accaagggca atcgctggaa gtgtatctgt taccaaattg atccaaagaa
    15061 gatgaactgg ctccaatacg tcccaaccaa agagggtagc aaggaagata cacaatacct
    15121 cagcagtgtt agctgacaag agatactgga tggttttttg gatgtttgag aagactttac
    15181 gtccttcttc aaccgccaca atgatagttg caaagttgtc atctgcaagg accatatcag
    15241 aggcaccttt cgaaacttcc gtaccagtga tacccatacc gataccaatg tcggcagtct
    15301 taagtgatgg cgcatcgtta acaccgtcac cagtcatggc aacaacctta ccatcatttt
    15361 gccaagcctt aacgatacga accttatgtt ctggagatac acgagcgtat acagaatatt
    15421 gtttgaagac tttttggaac tcttcatccg tcaattcgtt gagctctgca cctgtaaata
    15481 catggtcttc tgtatcattt ggatcgatga taccaagacg ttttgcaatc gcctcagctg
    15541 tatcttggtg gtcacccgta atcatgattg gacggatacc agcttcctta gcaacacgaa
    15601 cagcttccgc cgcttcagga cgctcagggt caatcatacc aaccaaacct gagaagacaa
    15661 ggtcgttttc aacaacgtca gattccaatt caggaatagc atcaacatac ttgtatgcca
    15721 tcatcaagac acgaagggct tgtttagcca agtccttgtt agtggcaaga atggcttgtt
    15781 tatccgcatc ggtaatcgga cggattgtac cgttttcttc aatttgcgtt acacgtttga
    15841 gcaattggtc tggggcacct ttaacagcta caaagaagtt tccagcagct tgttggtgaa
    15901 cagttgacat caatttacgt gttgagtcaa atggcaattc agccacacga ggctcagata
    15961 ccaagacttc acgaacgtca aagttttgat ccaaaccaaa ttgaacaagt gccgtttcag
    16021 ttgggtcacc gatcaattta ccagttgggt caacttttgt gtcgttggca aagttcatca
    16081 cgcgaagcgt tgtattgctt gcatccaaag cttctttagc atccaccaat tgaccgtttg
    16141 tataaacttt ttcaacagtc atctggttca tagtcaaagt accagtttta tctgaagcga
    16201 tgatttcagt tgaaccaagt gtttcaacag caggcaactt acggatgatg gaattacgct
    16261 tagccaagac ctgtgtacca agtgaaagaa caactgtaac aatagctggc aaaccttctg
    16321 gaatggcagc aaccgcaaga gctacagaag tcataagagc aggcaagata ccttctccac
    16381 gtacgaatac tgaaacagcc atcgttaccg ctgcaattac aagaactgcg tatgtcaaga
    16441 cttttgatag ctggtgcaag ttttgcttca atggtgtatc agtctcatct gcattagcaa
    16501 gcatgccagc gatgtgccca acctctgtgt acatacctgt atttgtaacc acaccaagac
    16561 cacggccgta agtaacatta gagttttggt aagccatgtt gacacggtca ccgattggtg
    16621 catcttcagc caaaactgct gacaaatctt tatcaactgg tacagactca cctgtaagag
    16681 ctgcttcttc gattttgagg gagttagctt ccaacaaacg catatcggca gggacaacat
    16741 cacctgcttc aagcaagacg atgtcacctg gtaccaagtc tttagaatca acttcgacta
    16801 catgattgtc acgaagcgca cgcgcaactg ggcttgacat gttttttagc gcctcaatag
    16861 ctgcctcagc ttgaccctct tgataaacac caaaggcagc gttcaagata accacggtca
    16921 agatgataat ggcatctgtc aaaccgtgtg aaccttctgt aatcaccgtc aagattgctg
    16981 ctgcaatcaa aatgataatc atcaagtctt tgaactgatc caagaattta gctaagagtg
    17041 tgcgtttttc accctcatcc aattcgttac gaccgtagtc tgctagacgt ttgcttgcct
    17101 catcactaga caaaccgtct aaagaagact ccatgcttga caatacttgc tcttcgcctt
    17161 gtgtataaaa caaatcgcgt ttttgttctt ttgacaattt ccttctcctt ttcggcctct
    17221 tctctacctt ctacaataaa aagagacctg ttttattaaa acaagtctcg ctatttaata
    17281 tattgccgga aacaagtcgg attgacgaca atatcacgga attttccgct agctactccc
    17341 tcgatttgtt aactattata tcaaaaatcc cgagaaattc aagaatattt ttctggaaat
    17401 aagagattat ttccacgaga tttccaaatc ataggaagca aaaagctgct ggttctccaa
    17461 tccctttaat tcatattgca actggacact ttgatccgaa cggtttaatt ggtaacgttt
    17521 tgtatcggtc acaaaatgct ggattcctaa cggtgtagga atggtcacaa tagcttcttt
    17581 accagaaatg aatcgcataa tagacttcgg agtggaaaaa cgtgtcatca ctaactcttc
    17641 ttcgtcacat tttatgacaa ctttttcagc ttcatcgtta ctataaatga gatagagatt
    17701 cccatctttt tccttaactt ccacttgaaa ttgctgatcc actacctcaa tctgcccgtc
    17761 cagatcaatt tcatttcgta aatgaatatc catagttcct cctactattt tttaatccta
    17821 gtaacaaagg atgaacgaag cagagtaaag cctgtatacg ctgcaatgaa gacaactaaa
    17881 attttcaaat tattaatatc caaatttgat aggaagaaag cggctgtcaa aacacctagc
    17941 accccaccga caacgattcc tggaactcct ggccagttta ctcgtcctga ttggataaac
    18001 tgcttggcac cagctgtcat aatcatagca gcattcaaca tcataactgg aagagcaacc
    18061 gctggactaa ttcccatcaa tgagaagaaa attaactcag gagcatagtt acccagtccc
    18121 atactcatca gcattcccac cataaaatca aaggcaatac caacagccag tttccaacca
    18181 gttaagccct ttacttcatt ggtaagttct gcgccagggt tagtaatcat gcgatagacc
    18241 atgaaacagg ctgcaataat tagtaaaatc ccaagaattc gttgaacttt ctttgtatcc
    18301 catttttgag ttaccttggc accaacaaag gcacccgtaa atgccgctgc tgccatagca
    18361 atcagagtga ccatatcaac ctcaactatc gtaataaaca atagcgcctc tactaagact
    18421 ggtatgatgt gcgccgttgt catggtcgca ggaattttac gatcgtcttc caccaacttt
    18481 gtcagtttaa acatagtggt tgttgttgca aaggttccaa tccccaaggt gtctagcaaa
    18541 tcagtaacat aaccgatacc aaatcctgtc caaaatttct cttttagaga aatatcatgc
    18601 tttttagcat aggatagaat tgtgtaaagc atccaaagaa tcagggctac aataaagacc
    18661 tgaatagtta ataagataat ttgattattc atttctccat tataccaaaa gattccattg
    18721 ggtacatagc aatatccttg tgttttagaa aaatcaggaa tttatctccc ttttttgtta
    18781 taatgaaact atgatagaaa aagtatttcg cgatccagtt cataactatg tacatgttga
    18841 tcatgagctg atttataaac ttatcaatac aaaagaattt cagcgactac gccgcatcaa
    18901 gcaactaggg actacttcct ataccttcca tggtggcgag catagccgct tttcgcactg
    18961 cctcggcgcc tacgaaatcg ccagacggat tactcaaaaa tttgaagaca agtatccaca
    19021 aatctgggat acaaatgagt ccctactgac catggttgct gcgctactcc atgatgtcgg
    19081 acacggagcc tattctcata ccttcgagcg tctatttgat acagaccatg aggaaatgac
    19141 ctgtgcaatt attactagtc cagaaacgga aatcaatgct ctgttgaaac aagtttcacc
    19201 tgagtttcca gacaaggttg ctagtgttat caaacacacc tatccaaata aacaggtcgt
    19261 tcaactcatt tcgagccaga ttgatgttga ccggatggat tatctattac gagattccta
    19321 cttcacaggt gcgaactatg gtgaatttga cctaactagg atattacgtg tcattcgccc
    19381 gacagaaaat ggaattgcct tcaaagaatc tggtatgcat gcagtagaag actacgttct
    19441 cagccgctac cagatgtaca tgcaagtcta ttttcatcca gcaagccgct ctatggaagt
    19501 cctattgcag aatttactca atcgtgccaa actactatat actagtgaac aggagttttt
    19561 tgcacgaact tcacctcggc tattaccttt ttttgagcat cgtatccgtc taaccgacta
    19621 cctcagtctt gatgatggag ttatgaatac ttactttcaa tcatggatag atggaccaga
    19681 tcgtatatta tctgacttag cccagcgcta tatcaatagg aaagtgctca aatccatcac
    19741 tttcaaggcc gaagaagagg aagctttgga ccgcctgcgt agcctggtcg cagacgtcgg
    19801 gtttgaccca gaatactata ctgctattca ccacaacttt gatttgccgt atgacattta
    19861 ccgaccgaat gcagaaaaga aacggactca aattgagatt tatcgcaaag atgaaacctt
    19921 ggtagaacta tcctctctgt caccaattgt ccattcctta tcaggcacaa tccatggcga
    19981 tagccgcttc tatttcccaa aagaaatgtt agaagaaaca ggaattttcg cacctcaaat
    20041 agctgatttt aacagccaca tacataacga tcattttata attggagaat caaatgagca
    20101 ttaaacttgt cgccatcgat attgatggta cactactaaa tagtcaacac caaattacag
    20161 ctgaagtaca ctcagcaatc caagaatcaa aaaaagcagg cgttaaaatt gttattgcta
    20221 ctggtcgccc catttccggt gttcaagcaa ttttagaaga actcaatctt acagaagcag
    20281 gtgactacgt catcactttt aacggtggct tagtccaaga tgcagcaact ggtgaggata
    20341 ttgtcaaaga taccttgact tatgaggact atctcgacat cgaatctgct gcccgtaaac
    20401 tcaagctccc aatgcatgcc agcaccaagg aaggcatcta tactgctaac cgtaacatcg
    20461 gtaaatacac catttacgaa tcaacactag taagtgcacc cattttctat cgcactcctg
    20521 aagaaatggc tgacaaggaa atcatcaaaa caatgatggt tgatgagcca gaaattcttg
    20581 atgctgctat tccacttcta ccgaccagct tgactgagaa gtacaacgta gcaaaatcag
    20641 caccatttta tttggaaatc acccctaaaa ctgttaacaa gggacaagct atcattcatc
    20701 tagctgagaa gcttggacta actatggatc aaactatggc catcggtgac caagaaaatg
    20761 accgtccaat gttggaagtt gttggtaatc ctgttgtcat ggaaaacgga aatcctgaat
    20821 tgaagaaaat cgccaaatac attacgaagt caaatgatga gagcggtgta gcccacgctc
    20881 ttagagaatg ggtactgaaa tagcctctta aaatatcaaa aaaagcatcg aattcaa
//
LOCUS       DASGCC010000020        20770 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.020, whole genome shotgun sequence.
ACCESSION   DASGCC010000020 DASGCC010000000
VERSION     DASGCC010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20770
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.020"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..733)
                     /locus_tag="U1404_000510"
     CDS             complement(<1..733)
                     /locus_tag="U1404_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM5347490.1"
                     /translation="MARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADLYTQVLSD
                     GLLAGKPFSSLLADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEV
                     ATYPIILLGFLFLIMLGLKNYLLPQLEEGNAATMLINHLPTIFLSLCGLSLVAVLAGM
                     VWFRKTNKIKAFSRLAALPFFGKLIQIYLTAYYAREWGSLIGQGLDLPQIVGLMQEQQ
                     SQLFREIGQDLEQSLSNGQSFHEHIK"
     gene            complement(717..1667)
                     /gene="tadA"
                     /locus_tag="U1404_000511"
     CDS             complement(717..1667)
                     /gene="tadA"
                     /locus_tag="U1404_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HEM5347491.1"
                     /translation="MIQEKARKLIEKAVADRVSDIYLVPRGESYQVYHRIMDEREFVQ
                     DLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYDYGSGEISLRLSTVGDYRGKESL
                     VIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
                     ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVI
                     RASLTGATVFSTVHARSISGVYARMLELGVSPEELNNALQGIAYQRLIRGGGVVDFAK
                     GNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGSPA"
     gene            1753..2703
                     /locus_tag="U1404_000512"
     CDS             1753..2703
                     /locus_tag="U1404_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM5347492.1"
                     /translation="MKTLKKGDHIHVVSPSSSIERIGGFEANLAAKEKLEDLGFKLSF
                     SEHYFENDIFDSAPIASRVADLEVAFADESVDAILTTIGGFNCNELLPYLDFDLIARH
                     PKIFCGYSDTTALLNAIYAKTGMPTYMGPAYSSFKMDLGQQYQTEAWLKAVTQDSFDL
                     TPSPEWSSDAWYLPDAPRTFYPTEWKVYNPGQASGIAIGGNISTLNLLTGTEFAPRPD
                     EYILFLEEAEDDDYLIIARHLTTLLQAYPNPQALVFGRFPKETKMTEKILLAILDKHP
                     ILKTIPVLYDLDFAHTQPLFTITIGGQVELDTKAFSIRFS"
     gene            complement(2738..3103)
                     /locus_tag="U1404_000513"
     CDS             complement(2738..3103)
                     /locus_tag="U1404_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HEM5347493.1"
                     /translation="MYQVIKMYGDFEPWWFLDGWEEDVTSRAAFDRYEDALNAFQKEW
                     VRLSEDFPMKKSKNGTMVAFWDESDQHWCEECDEYLQRYHSLMLVEARENLPAGFIKQ
                     PTQPRVRPCKLKQNNCVNE"
     gene            complement(3252..6899)
                     /gene="rpoC"
                     /locus_tag="U1404_000514"
     CDS             complement(3252..6899)
                     /gene="rpoC"
                     /locus_tag="U1404_000514"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEM5347494.1"
                     /translation="MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERD
                     GLFDEVIFGPTKDWECSCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAPIS
                     HIWYFKGIPSRMGLTLDMSPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLR
                     EYGYGSFVAKMGAEAIQDLLKQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFY
                     KSGNKPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLARLLELN
                     APGIIVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLG
                     KRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIE
                     RGDDRIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNAD
                     FDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDA
                     GREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPWKDNQKHKIMMTTVGKIL
                     FNAIMPEGLPYLQEPNNANLTEGTPDKYFLESGSDIKAAIAELPINPPFKKKNLGNII
                     AEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGIADIPVIDNKAEIIEESHERVEQ
                     IKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISN
                     FSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGRYTKKTVKHPE
                     TGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCRHCYGINLATGDAVE
                     VGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGEAVI
                     TEVKGEVIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQVARGAALTEGS
                     IQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDT
                     DLLMGTLMDISDFTDANAETVIAGGVPATARPVLMGITKASLETNSFLSAASFQETTR
                     VLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTVAEEL
                     AAEAELEAVTE"
     gene            complement(7077..10649)
                     /gene="rpoB"
                     /locus_tag="U1404_000515"
     CDS             complement(7077..10649)
                     /gene="rpoB"
                     /locus_tag="U1404_000515"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM5347495.1"
                     /translation="MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDYG
                     LKEVFEDVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLVNKE
                     TGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKVGYGS
                     TVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR
                     NTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVG
                     RYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLEKVEAQFDELNLVE
                     YIPNDNAVLLEPVLLQKFKIVAPKDPERVVTVIGNANPAENVRTVTPADILAEMSYFL
                     NLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNLRERMSVQDNEVLTPQQ
                     IINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRD
                     VHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKIDRATGTVTNEIVW
                     LTADEEDAYIVAQSTSPLDENNRFVDKIVMGRHQGNNQEFPADSADFMDVSPKQVVAV
                     ATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHD
                     GKVVYADADKVEVRREDGSLDVYHISKFRRSNSGTAYNQRTLVKLGDIVEKGDFIADG
                     PSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTK
                     LGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLL
                     HAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGVNMLVRVYIAQKRKI
                     KVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLG
                     MAARNLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVM
                     YMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQ
                     EILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDNNE
                     VELRDLDEGEDDDIIHVDDLEKARAKAAADAAAAFAAEEAEGKE"
     gene            complement(11206..13629)
                     /locus_tag="U1404_000516"
     CDS             complement(11206..13629)
                     /locus_tag="U1404_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5347496.1"
                     /translation="MATKSDKQDFKKKISALVLGDVVGVFLRTLKLLFNSVAVLVFLF
                     GLFGAGIGIGFVVSLFDDVKIPKTEELVAKVSEVSRISTVTYSDGSLVSEVNSDLLRV
                     PITSEEVSNYLKQAVIATEDETFETHNGVVPKAVLRAALGSVGLGSSSGGSTLTQQLI
                     KQQLVGDAPTFTRKANEIVSALALERNMTKEEILTIYLNVSPFGRNNQGRNIAGVEAA
                     AQGIFGKPAKDLTVPQAAFIAGLPQSPIVYSPYASDGTRKSDEDMVYGVERYQDVLFN
                     MYRASFLTKEEYETYKAYDIKQDFIAPAPVMADTKDYLYYKVMEEAQEVMFDYLVKRD
                     KVSKNDLKNDETKASYEELAKQELSQGGYTIKSTVDQGIYAAMQSVVANYGSVLDDGN
                     EYVETGSVLIDNATGAILGFVGGRDYSTNQNNHAFDTLRSPASTIKPLLAYGIAIDQG
                     LIGSASILSDYPTNFSSGQPIMYGSGRGTGMMNLQTAIDRSVNIPAFWTYKMMRNAGV
                     DAKAYMDKMNYHIPMYDIESVPLGGGVEISVLTNTNAYQTLANGGVYNKHYIVESITA
                     SDGTVVYQHEAAPVQVYSKATASIMNQLLRQVVNSGYTTTFKSRLSGLNPQAASSDFV
                     GKTGTSNEVNDVWLMLSTPRVTLGTWAGNDDNSEMYVWTGYHNNSQYVAHMVDALYNV
                     NADMFAGKFELDSSVIASSVVASTGQRAGTTQVNGRQVTVGGAMTTSYWAKNGAPVTS
                     YNFMVGGTDSDRAQAWNTIIGSQTPTSSSSTQRSSSTRSSTSSSANNTNQSSETQTAT
                     SEQANNDSP"
     gene            13783..15039
                     /locus_tag="U1404_000517"
     CDS             13783..15039
                     /locus_tag="U1404_000517"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011184085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEM5347497.1"
                     /translation="MNIFEELKARGLVFQTTDEEALVKALTEGQVSYYTGYDPTADSL
                     HLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVTKIQ
                     GQLSRFLDFENGDNKAEMVNNYDWFSDISFIDFLRDVGKYYTVNYMMSKDSVKKRIET
                     GISYTEFAYQIMQGYDFYELNDKYNVTLQIGGSDQWGNMTAGTELLRRKADKSGHVMT
                     VPLITDSTGKKFGKSEGNAVWLDADKTSPYEMYQFWLNVMDDDAVRFLKIFTFLSLDE
                     IAEIEKQFDAARHERLAQKILAREVVTLVHGEEAYNQALNITEQLFAGNIKNLSAKEL
                     KQGLSNVPNYAVQAEDNLNIVELLVTSGIVTSKRQAREDVQNGAIYVNGERVQDLDYT
                     LSDSDKIDGELTVIRRGKKKYSVLTY"
     gene            15097..15474
                     /locus_tag="U1404_000518"
     CDS             15097..15474
                     /locus_tag="U1404_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM5347498.1"
                     /translation="MTCIFCHQIEEIDILYQTEYFKVVWDIDPIQTGHLLIISKEHYD
                     TLSQIPSAVRYELSDLEVFLTGKLCQTLAIDGVTTARNDRLFDAGTHFHVHLIPRFRS
                     DGFWDQISLAQVQLDLNAFLKAL"
     gene            complement(15767..15976)
                     /locus_tag="U1404_000519"
     CDS             complement(15767..15976)
                     /locus_tag="U1404_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEM5347499.1"
                     /translation="MKQTLKLKNLSCQNCVKHVTNHFLELDGVEEVKIQLEEQLAEVE
                     TTVAYDLEQYQEVLEDTIYEVEELV"
     gene            complement(15973..16419)
                     /locus_tag="U1404_000520"
     CDS             complement(15973..16419)
                     /locus_tag="U1404_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopY/TcrY family copper transport repressor"
                     /protein_id="HEM5347500.1"
                     /translation="MEQTISAAEWQVMRVLWAQPGATSQEIIQALQEGFDWQATTIKT
                     LLGRLRKKNYLRMAKETSKYHYYPLISEEEHLQGQVELLLATICSTKQGQLVEKLLDT
                     GIFSQKSLEKLASKISQLQRTAPEQIACRCLAGQCTCGHHAKGEKT"
     gene            complement(16519..18030)
                     /locus_tag="U1404_000521"
     CDS             complement(16519..18030)
                     /locus_tag="U1404_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     AdcA"
                     /protein_id="HEM5347501.1"
                     /translation="MKKVGLLFLSVSALLLGACGNSTASEDGKLNIVTTFYPVYEFTK
                     QVAGDEANVDLLVKAGTEVHGYEPSAKDIARIQEADAFVYENENMETWVHDVEKSLDT
                     TKVNVISATEGMLLLPGGEEEHKGHDHSGERHSHAYDPHVWLSPERAITLVENIRDSL
                     VAKYPEKKDAFETNAAAYIEKLDALDAKYSETLSAAKQKYFVTQHTAFAYLALDYGLK
                     QVSITGVAADEDPTPSRLAELTEYINKYGIKYIYFEENASKSVAETLAKETGVQLDVL
                     NPLESLTDEDMKNGKDYISVMEDNLTALEKTTSQEGSEILPEEGAETAQTVYNGYFED
                     SAVKDRTLSDYAGEWQSVYPYLLDGTLDQVWDYKAKIKGGMTAEEYKAYYDTGYKTDV
                     DQINITDNTMEFVVGDKKEKFTYKYVGYKILTYKKGNRGVRFLFEATDANAGNYKYVQ
                     FSDHNIAPVKTGHFHIYFGGESQEKLLEELENWPTYYPVGLTGLEIGQEMLAH"
     gene            complement(18040..18852)
                     /locus_tag="U1404_000522"
     CDS             complement(18040..18852)
                     /locus_tag="U1404_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5347502.1"
                     /translation="MFDLSVFHYDFMQRAFLAIIAMSLFSPILGVFLILRRQSLMSDT
                     LSHVSLAGVAFGLVLGISPTLSTVLVVIVAAVFLEYLRTIYKNFMEIGTAILMSTGLA
                     ISLIVMNKSGGKSGLSLEQYLFGSIVTISQEQVIALFTIAVIVIVLTLLFLRPMYILT
                     FDEDTAFVDGLPVRAMSIAFNVVTGVAIALMIPAAGALLVSTIMVLPASIALRLGKSF
                     KAVIFTGMGIGFFGMVMGLLTSYYAETPASASITLIFISIFLLVNVVQKFKK"
     gene            complement(18845..19549)
                     /locus_tag="U1404_000523"
     CDS             complement(18845..19549)
                     /locus_tag="U1404_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM5347503.1"
                     /translation="MRYITVEDLSFYYDKEPVLEHIHYYLDSGEFVTLTGENGAAKTT
                     LIKATLGILKPKQGKVSIAEKSIKGKKLRMAYLPQQIASFNAGFPSTVYEFVKSGRYP
                     RQGWFRRLTAHDEEHVRISLESVGMWEHRDKRLGALSGGQKQRAVIARMFASDPDIFI
                     LDEPTTGMDAGTKDAFYQLMHHSAKKHGKSVLMITHDPDELNKYADRNIHLVRDQQSP
                     WRCFNVHEADEEVAHV"
     gene            complement(19550..19993)
                     /locus_tag="U1404_000524"
     CDS             complement(19550..19993)
                     /locus_tag="U1404_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent MarR family transcriptional
                     regulator"
                     /protein_id="HEM5347504.1"
                     /translation="MNRIVLEIEKYLHEIVLSSENQLEILVGSCQSTVKLTNTQEHIL
                     MLIEKAAYTNTEIAKELNVSQAAITKATKSLVAQGLLVAVRDDKDARIVRFSLTEAAK
                     PIATEHAHHHAHTLEAYEELLEHYSLEEQESIARFLSELVEKIRK"
     gene            20463..20742
                     /locus_tag="U1404_000525"
                     /pseudo
     CDS             20463..20742
                     /locus_tag="U1404_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636196.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT         5958 a         4981 c         4050 g         5781 t
ORIGIN      
        1 tcttaatgtg ttcgtgaaag ctctgcccat tggaaagcga ctgctccagg tcctgcccaa
       61 tctcccgaaa gagctgcgat tgctgctcct gcatcaagcc cacaatctgt ggcaggtcca
      121 agccttgccc aatcaaactt ccccactccc tggcgtaata ggccgtcaga tagatttgga
      181 tgagttttcc gaaaaatggc agagctgcca agcgggaaaa tgccttgatt ttgttggttt
      241 tgcgaaacca aaccatacca gccaagaccg ccaccaaact aagtccacag agggataaaa
      301 agatagtcgg cagatggtta attagcatgg tcgcagcatt gccttcctcc aactggggca
      361 gaagatagtt tttcaagcct agcataatca agaacagaaa acccagtaag ataatcggat
      421 aggtcgccac ctcaatcagc tttttacgaa ccttgctgac attttccaga taggactgga
      481 tatggctcaa actcaggctg gtattaccat gaacttctgc cagagccacc tgtgtgacca
      541 ccgcatctga aaaccgcaaa tctgccagta aactcgaaaa gggtttgcct gccagcaacc
      601 cgtctgacaa gacctgggta tagagatctg ccagaagctg actgcgtttg aggaaatcaa
      661 caatctcccc cagatgaaaa ccactagcaa aaagattatt gaaaagctca atgaccttac
      721 gctggcgagc caagggcaat tttttctgtt tctgcctgcc taagactgat atgtcctgct
      781 gcaaaaaggc gatcaatttg cgcattccac tggtctgcgg aatggttttg gtaatttccc
      841 tttgcaaaat ctaccacacc tcctcccctg attaaacgtt gataggcaat accttgaagg
      901 gcattgttta actcctcagg actgaccccc aattccaaca tacgagcata gacacccgaa
      961 atagaccttg cgtgaaccgt tgagaagacc gtcgctcctg tcagactggc tcgaatgact
     1021 gctcgagcgg tttccgcatc ccgaatttca ccgatgatga gcaagtctgg tcgatgacgg
     1081 agggacagtt tgatcagatt gtcgtaggtg gctccgatgg cttcattgag ctggagttgc
     1141 agcatgtcct cctgtttgat ttcgacagga tcctcgatgg tcaaaatctg cttgtctggg
     1201 aatttcagcc tggcaagatg gtacataagt gtggtcttac cagagccgac tggacccgaa
     1261 aaaaggtaga gccctcgtcc cttgatttct tctgcaagcc gctcagccgc ctcaaaccag
     1321 aacttgagtt ccttgtcatt gtcatagagc aagcggatca ccagactttc cttgccacga
     1381 taatctccga cagttgataa gcgaagtgaa atctctccgc taccataatc atagtcacag
     1441 gaaccctgct ggctacggcg tttttcacca acatttaaac ctgctaaaaa cttgaaatgg
     1501 ctgatgatgg ctgttacttc ctcctcagcc aagtcttgca caaactcccg ttcatccatg
     1561 atgcgatgat aaacttgata gctttccccg cgaggaacca gataaatgtc actgacccta
     1621 tccgccactg ccttttcaat caactttctt gctttttctt gaatcataaa acctcctcac
     1681 cctatctatt cgcaaggaaa cttgattttc catacttttt tgttaaaata ataaaaaaac
     1741 ttggaggttc ctatgaaaac attaaaaaaa ggcgaccaca tacatgtagt cagtccctct
     1801 tcatctattg aaagaattgg tggttttgaa gccaatcttg ccgccaagga aaaattggaa
     1861 gacctgggct tcaaactctc tttctcagaa cattattttg aaaacgatat tttcgattcc
     1921 gctccaattg ccagtcgtgt tgcggacttg gaagtagcct ttgcggatga gtcagtcgat
     1981 gccattctga caaccattgg cggtttcaac tgcaacgaac tcttgcccta tctggatttt
     2041 gacctaattg cgcgtcatcc aaagattttc tgtggttatt cggacacaac tgccctgctc
     2101 aacgccatct acgccaagac aggcatgcca acctacatgg gtccagctta ttcaagtttc
     2161 aaaatggatt tggggcaaca gtatcaaaca gaagcctggc tcaaggctgt gacacaagac
     2221 tcctttgact tgaccccgag tccagaatgg tctagcgacg cttggtacct accagacgcc
     2281 cctcgcacct tttacccaac agaatggaaa gtctacaatc caggccaggc ctctggtatt
     2341 gccattggcg gaaacatctc aaccctcaac ctgctgactg gaacagagtt tgctcccaga
     2401 ccagacgaat atattctatt tttagaggag gcggaagacg acgattatct cattatcgct
     2461 cgtcacttga ctacactttt acaagcctat ccaaatccac aggctcttgt cttcggtcgt
     2521 tttcctaaag agaccaagat gacggagaag attttgctgg cgattttgga caagcaccct
     2581 attctcaaaa ccatcccagt tctctacgat ttggattttg cccataccca gcctctgttt
     2641 accattacaa tcggtggtca agtggagctc gacaccaaag ccttttctat cagattcagc
     2701 taaaaaggat tgacccgcaa aggtcaatcc tcttttatta ttcatttacg caattatttt
     2761 gttttaattt gcaggggcgt acacgaggtt gcgtaggttg cttaataaaa ccagccggta
     2821 aattttctct cgcttctacc aacatcagcg aatgataccg ctgcaaatat tcatcgcatt
     2881 cctcgcacca atgctggtct gattcatccc aaaaagccac catcgttcca ttcttacttt
     2941 tcttcattgg aaaatcctct gatagccgta cccactcttt ttgaaaggca ttcagtgcat
     3001 cctcatagcg atcaaaagca gccctactgg taacatcctc ttcccaacca tctaagaacc
     3061 accagggctc aaaatctcca tacattttaa ttacttgata cataacacat acttcctttt
     3121 tcgtacacat tataccgaat tcgtctgatt taagaaaaca ttctgcttgt taattcctta
     3181 tcaagttgtg tgagcgcttt atttctgaac gaaagaaaac acatccctca gaaagagatg
     3241 tgtctcaaat cttattcagt tacagcttca agctctgctt ctgctgcaag ttcttcagca
     3301 actgtgtctt caatgatttc aacttcattg atggcttgtg gttcaagatt acggtagcgg
     3361 gccatacctg tacctgctgg gataatctta ccgataataa cgttctcttt aagaccgaga
     3421 aggttgtcac gtttaccacg gatagcagca tctgtaagga cacgtgttgt ttcctggaag
     3481 gatgcggcag acaagaatga gttggtttca agagacgctt ttgtgatacc cataagaact
     3541 ggacgagccg ttgctggaac accaccagcg atgacagttt ccgcattggc atcagtaaag
     3601 tctgagatat ccatgagggt acccatgagc aggtctgtat ctcctggatc catgacacga
     3661 actttacgaa gcatttgacg aaccattacc tcgatgtgct tgtcgccgat ttctacaccc
     3721 tggctacggt aaactttttg aacttcagaa agaaggtaag tttcaaccgc caagacatca
     3781 cggacttcaa gcaagcgttt tggttggata gaaccttcgg taagggcggc tccacgcgcg
     3841 acttggtcac caacttcaac cttcatacgg gctgtaaatg gaaccacata ttcgccttcg
     3901 ccagttttac ccttaacaaa gactttcttg gtacgagtag aagcatcttc ttcaatagcg
     3961 ataacttcac ctttaacctc agtgataacc gcttcccctt tcggattacg ggcttcaaag
     4021 atctcttgga cacgaggaag accctgcgta atatcgctgt ttgaggctac accacccgtg
     4081 tggaaggtac gcattgtaag ctgtgtacca ggctcaccga tcgattgggc agcgattgta
     4141 ccaactgctt cacccacttc aaccgcatca cctgttgcca agttgatacc ataacaatga
     4201 cggcagacac cgtgacgagt gttacatgta aatacgctac ggatagttac ttgttcaaca
     4261 cctgcattga cgatttcacg ggcaatatct tccgtaatca attggtttgg accaatgata
     4321 acggcacccg tttcaggatg tttaacagtt ttcttagtgt aacgaccttg caaacgctct
     4381 tcaagtggct cgatcatttc cttgccatct gtgattgaac ggatgtcaag accacggtct
     4441 gttccacagt cgtcttcacg gataataacg tcttgggcaa cgtcaaccaa acgacgagtc
     4501 aagtaacctg agtcggctgt cttcaaagcc gtatccgtca tccccttacg ggcaccgtga
     4561 gttgagaaga acatttccaa aacagaaaga ccttcacgga agttagacaa gataggcaat
     4621 tccatgatac gtccgttcgg agctgacatc agaccacgca taccggccaa ctgggagaag
     4681 ttggaaatgt taccacgggc accagagtcc atcatcataa cgattggatt cttcggatct
     4741 tgtttttcaa ccaggcgttt ttccaatttt tccttagctg aacgccattc atctgtaaca
     4801 gctgcataac gctcatcgtc tgtaatcata ccacgacgga attgtttctt gatttgttct
     4861 acacgttcgt gagattcttc aatgatttca gccttgttgt cgataactgg gatatcggca
     4921 atacccactg tcaaaccagc gagtgttgag tgataataac ccaagtcttt caaacggtca
     4981 agaagggctg atgtctcagt tgtacggaaa cgcttgaaga tttcagcgat gatgttacca
     5041 agatttttct tcttgaatgg tgggttgatt ggcaattctg caatggcagc cttgatatct
     5101 gaacctgatt ccaagaagta tttatcagga gttccttctg tcaagttagc attgtttggc
     5161 tcttgcaagt atggaagacc ttctggcata atcgcgttga acaagatttt tccgacagtt
     5221 gtcatcataa tcttgtgttt ttggttgtct ttccaaggtt tatcaaggct atccgttgcg
     5281 ataccaacac gagtatgcaa gtgaacatag ccattgcggt aagccataac agcctcatcc
     5341 gcatccttga agaccatacc ttcaccttca cgaccagcat cttccatggt caagtagtag
     5401 ttacccaaaa ccatatcctg agatggtgtt acgacaggtt taccatcttt agggttaagg
     5461 atgtgttctg ccgcaagcat aaggatacgt gcttctgctt gtgcttcttc tgacaatgga
     5521 acgtgaatcg ccatctggtc accgtcgaag tcggcgttgt aggcttcaca gacaagcggg
     5581 tgcaaacgaa gggctttacc gtcgatcaga actggctcaa aagcctggat acccaaacgg
     5641 tgaagggtag gtgcgcggtt caaaagaact gggtgttctt tgatcacttc ttccaagata
     5701 tcccagatac gatcatcccc acgttcaatc aaacgttttg cagcttttac gttaccagca
     5761 atatcacggg caacgatttc gcgcataaca aacggtttga agagctcgat agccatttcg
     5821 cgtggcacac cacattggta cattttaagc gttggaccaa cagcgataac ggaacgtcct
     5881 gagaagtcaa cacgcttacc aagcaagttt tgacggaaac gtccttgctt acctttaagc
     5941 atgtggctga gtgatttaag tggacggcta cctggtcctg taattggacg accacggcga
     6001 ccgttgtcaa tcaaagcatc cacagcttct tggagcatcc gtttttcgtt ttgtacgatg
     6061 atacctggag cgttaagttc caagagacga gccaaacggt tgttacggtt gataacacgg
     6121 cggtagagtt cgttcaagtc agacgccgca aaacggccac catccaactg aaccatcgga
     6181 cgcaaatctg gtggaataac tggaaggatg ttgagaatca tccactcagg cttgttacca
     6241 gatttgtaga atgcatccaa tacatctaag cgacgaactg ctttaatgcg tttttgacca
     6301 gaagctgttt tcaattcttc tttcaaagct gcgatttctt ttggaagatc gacttgtttc
     6361 aagaggtctt ggatggcttc tgcacccatt ttagcaacga atgaaccata accatattca
     6421 cgcaaacgct cacggtattc gcgctctgtc atgattgact tgtgctcaag cggtgtatct
     6481 ttaggatcaa tcaccacgta agccgcgaag tagataactt cctcaagcgc acgtgggctc
     6541 atatccaagg tcaagcccat acgacttgga atacctttga aataccaaat gtgtgaaatt
     6601 ggtgctttca actcaatgtg tcccatacgt tcacgacgta cttttgcacg agtcacttca
     6661 acaccacagc ggtcacaagt aatcccttta taacggatac gtttgtattt accgcatgaa
     6721 cactcccagt cttttgttgg accgaagatg acttcgtcaa aaagtccatc acgttctggt
     6781 ttaagtgtac gatagttgat tgtttcaggt tttttaacct caccgtaaga ccatgaacga
     6841 accttacttg gtgaagctaa cgtgatttgc atacttttaa atcgatttac gtcaaccact
     6901 aataatccct ttcttttctt gtgagaggtt ggattcccag acctcaaatt cttgaacaat
     6961 aatcagcaga atggatagct ggtaagctat ttttctataa atcagacggt ggaagaccgt
     7021 cggcccttat ctatttcagt tctgaggttt ggaccaactt gttccatcca ttctaattat
     7081 tctttgcctt ctgcttcttc tgctgcaaag gctgcggctg cgtcagctgc ggcttttgca
     7141 cgtgcttttt caagatcatc tacgtggatg atgtcatcat cttcaccttc atcaaggtca
     7201 cgcaactcta cttcattgtt gtcttcatca aggacacgca tatccaaacc aagtgattgc
     7261 aattctttga caagaacgcg gaatgattct ggaacacctg gttttggaat tggtttacct
     7321 ttggtgatgg cttcataggc tttaagacgg cctgtcacat catctgactt ataagtcaag
     7381 atttcttgaa ggacgtttga agcaccgtag gcttcaaggg cccaaacctc catctcaccg
     7441 aaacgctgac caccaaactg agccttacct ccgagtggct gttgggtaac gagtgagtat
     7501 ggtccgactg agcgggcgtg gagtttatca tcaaccatgt ggtgaagctt gatcatgtac
     7561 atgacaccga cagatacacg gttgtcaaat ggctcacctg tacgtccatc gtaaagaatg
     7621 gttttggcat ctgaatccat acctgcttct ttaacagttg accaaagatc ttctgaactt
     7681 gcaccatcga aaactggtgt tgcgatatgg atgcccaagt tgcgagccgc catacccaag
     7741 tgaagttcca taacctgacc gatgttcata cgtgatggca ccccgagtgg gttcaacatg
     7801 atgtcaactg gtgttccgtc tggaagatat ggcatatcct caacaggtac aatacgtgaa
     7861 acgacaccct tgttaccgtg acgaccggcc atcttatctc cgaccttgat cttacgtttt
     7921 tgagcgatgt aaacacgaac caacatgtta acacctgatt gcaattcatc accgttggca
     7981 cgagtaaaga ttttcacatc acgaacgaca ccatcggcac cgtgaggtac acgaagagag
     8041 gtatcacgta cttcacgtga cttgtcaccg aagattgcgt gcaagagacg ctcttcagca
     8101 gaaagatctt tttcaccttt tggtgtaact ttaccaacaa gaatgtcgcc ctctttaact
     8161 tcggcaccaa tacggataat acccatttcg tccaagttgc gaagagcatc ttcaccaacg
     8221 tttggaattt cgcgagtgat ttcttcaggg cctaacttgg tatcgcgtgt ttctgattcg
     8281 tattcttcca agtgaacaga tgtatagaca tcgtccttca caaggcgttc agacatgata
     8341 accgcatcct cgaagttgta accttcccaa gtcatgtagg caacgatagg gttttgacca
     8401 agagccattt ccccattttc catagaaggg ccatctgcga tgaagtcgcc tttttcaacg
     8461 atgtcgccca attttacaag ggtacgttgg ttgtaggcag taccagagtt tgaacgacgg
     8521 aatttagaaa tgtggtagac atcaagcgat ccatcttcac gacgcacttc taccttgtcc
     8581 gcatctgcgt aaacaacctt accatcgtgt tgagcgataa ttgccgcacc tgagtcgtga
     8641 gcagcctggt attccatacc agtaccaacg taaggtgctt ttggatcaat caatggaaca
     8701 gcctgacgtt gcatgttggc ccccatgagg gcacggttgg agtcatcgtt ttccaagaaa
     8761 ggaatacatg ctgtcgcaac ggcaactacc tgcttaggtg aaacgtccat gaaatctgct
     8821 gaatctgctg ggaactcttg gttgttacct tggtgacgtc ccataacaat cttatcaacg
     8881 aaacggttgt tttcatcaag tggcgatgtt gattgggcta caatataagc atcttcttca
     8941 tcggctgtca accaaacgat ctcatttgta actgtaccag ttgcacggtc aatcttgcgg
     9001 tatggtgttt ggatgaaacc atacttgttg agatgcccat aagatgacaa gttgttgatc
     9061 aaaccgatgt ttggtccctc aggcgtttca atcggacaca tacgaccata gtgagtgtag
     9121 tgaacgtctc gaacctcata accagcacgg tcacgagtca aaccaccagg tcccaaggct
     9181 gacaaacggc gtttgtgaga caactcagaa agtgggttgt gttggtccat gaactgtgac
     9241 aactgagatg aaccaaagaa ttctttgatt gcggctgtaa caggacggat attgatgatt
     9301 tgttgtggcg tcaatacttc attgtcttga accgacatac gctcacgcaa gttacgttcc
     9361 atacgagtca aaccgatacg tacttggtta gcaagcaatt caccaacggc acgaatacga
     9421 cggttaccca agtggtcaat atcatctacg cgaccaagtc cttcagccaa gttgaggaag
     9481 tagctcattt cagccaagat gtccgcaggt gttactgtac gtacgttttc tgctggatta
     9541 gcattaccaa tcaccgtcac aacacgttct ggatccttag gagctacaat cttgaatttc
     9601 tgcaaaagaa ctggctcaag aagaacagcg ttgtcatttg gaatatattc taccaagttg
     9661 agctcatcga attgtgcttc tactttttca agcacatcac gactcaatac agtaccagct
     9721 tccaagacga tttcgcctgt ctcaccgtta atcacatgct cagcaagtgt ttggttgagc
     9781 aaacgagtac ggaggttgag ttttttatta atcttgtaac gaccaacagg tgccaaatcg
     9841 taacgacgtg ggtcaaagaa acgagctgtc aaaaggctac gagagctttc agctgtcttt
     9901 ggttcacctg gacgaaggcg ctcatagatt tccttaagcg cttcatccgt acgagaatct
     9961 gctgggtttt tatgaatatc tttttcaatg gtattgcgaa ccaattcgct atcaccgaag
    10021 atgtcaaaga tttcatcatc gcctgagaaa ccaagcgcac gaacaagcgt tgtgaacgga
    10081 atcttacgcg tacggtcaat acgagtgtag gcaatgtctt ttgaatctgt ttccaattcc
    10141 aaccaagctc cacggttagg gataaccgtt gaaccataac ctactttacc gttcttatct
    10201 actttatcat tgaagtagac acctggtgaa cgaaccaact gagaaacgat gatacgctct
    10261 gcaccgttga tgatgaaggt acccatttca gtcatgattg gaaactcacc gaagaagact
    10321 tcttgtgtct tgatctcgcc agtttcttta ttcaccagac ggaaagttac atagattgga
    10381 gctgagtagt tcgcatcatg cgcacgcgcc tcttccaatg tgtatttagg ctctttcaat
    10441 tcataaccaa cgaattccaa ttccatggta tccgtaaagt ttgaaactgg aagtacatct
    10501 tcaaagactt ctttcaaacc ataatctaaa aagtcttgga aagagtccgt ttggatttca
    10561 atcaaatttg gtaaatcaag aacttccttg attcttgaaa aactacgacg ggtacggtgc
    10621 ttaccgtact gaacttcatg tcctgccaaa agttttctcc tttgtattaa gatactaagc
    10681 cgtaaacaac tcaaagaaaa ataggaaaca cgacgacgga ggcaagcctc ctaggagctg
    10741 tttatctttt ttcacagagt tgtaggcgag ttcaattaaa agatacgaga ccgtgaaaac
    10801 caaagtgaaa ataagcggta agtccaaaat ctttgatttt gttgacgcac cctcgtcaga
    10861 acgactagga ctttcttgac aaatcgtcga agaaaggcca gacgtttacg acgttgggag
    10921 tgacaaacca aagtaaatat ttcatacact ttttcacaca ggttttagcc cgagttcaat
    10981 tatatacagc catgtgatga ccaacattca tcctttttct gaatttttag aatctttaag
    11041 aatagataac aattctcaaa aaaattcctc atagacacaa aaagagcagc taaatcttcc
    11101 tttgaaaaag tttgatttaa ctgctgcaag ccttgtttgg acaatatttc aaacaagaca
    11161 cacgacaaat aatttacact attatagcac aagtactagg aaaaatcaag gtgaatcatt
    11221 attcgcttgc tcactagttg ctgtttgcgt ttctgatgac tggttcgtgt tattagctga
    11281 agaactcgtg ctactccgag tcgaactgct tcgttgggtt gagctacttg atgttggcgt
    11341 ttgggaaccg ataattgtat tccaagcctg tgctcggtca ctatctgtcc ccccaaccat
    11401 gaagttatag ctcgttactg gtgcaccatt tttagcccaa taactagttg tcatcgcacc
    11461 accaactgtt acttggcgcc catttacctg tgtcgtccct gcacgttgac ctgtagaagc
    11521 aacgacacta gaagcaataa cactactgtc taattcaaat tttcctgcga acatatccgc
    11581 attaacattg taaagcgcat caaccatatg ggccacatat tgtgaattat tgtggtagcc
    11641 tgtccagaca tacatttctg agttatcatc attcccagcc caggtaccta aagttactct
    11701 aggggttgat agcatgagcc acacgtcatt aacttcatta cttgtccccg tcttaccgac
    11761 gaaatcagat gatgctgcct gtgggtttaa accactcaat cgactcttga acgtcgtagt
    11821 ataaccagag ttgacaacct gtctcaaaag ctggttcata atacttgcag ttgctttaga
    11881 atagacctga accggagccg cttcatgctg atacactact gttccatcag aggcagtaat
    11941 actctcaacg atgtaatgtt tgttataaac gccaccattt gccaaagttt gataggcatt
    12001 ggtatttgtc aatactgaaa tttcaacacc accgcccaac ggtacacttt caatatcgta
    12061 cataggaata tgataattca ttttatccat gtacgctttg gcatctacac ctgcatttct
    12121 catcatctta taggtccaaa aagcaggaat gttaacagaa cggtcaatag ccgtctgtaa
    12181 gttcatcata ccagtaccac gtcctgaacc atacataatc ggttgtccac ttgaaaagtt
    12241 cgttggataa tcggaaagga tgctggcaga acctatcaaa ccttgatcaa tcgcaatacc
    12301 gtaagctaac agaggcttga tggttgacgc tggcgaacga agagtatcaa aggcatggtt
    12361 attttggttg gttgaataat cgcgaccacc cacaaatcct aaaatggctc ctgtggcatt
    12421 atcaattaac acactacctg tctcgacata ttcgtttcca tcatccaaaa cagagccata
    12481 atttgccaca acagactgca tcgccgcata gattccttga tcaacggtac tcttaatcgt
    12541 gtagccacct tggctcaatt cttgcttggc caactcctca taggatgcct ttgtttcatc
    12601 atttttcaag tcatttttag aaaccttatc gcgttttacc aggtaatcaa acataacctc
    12661 ctgcgcttct tccatgacct tgtaatagag ataatctttc gtatccgcca ttacaggagc
    12721 tggagcaata aaatcttgtt taatatcgta ggctttatag gtttcgtatt cttccttggt
    12781 caagaatgac gcccgataca tattaaagag aacatcttga tagcgttcaa caccgtaaac
    12841 catatcttca tctgatttac gtgttccatc tgatgcatag ggagaataaa caatcggact
    12901 ttgaggcaag cctgcaataa aagcagcctg cggaacagtc aagtctttcg ctggtttacc
    12961 aaaaattccc tgagccgcag cttctacccc tgcaatattt cgtccctgat tatttctacc
    13021 aaatggagaa acatttaagt aaatggtcaa aatctcttcc ttggtcatat tccgctctaa
    13081 tgccaaagcc gaaacaatct cattagcctt acgcgtaaag gttggagcat ctccgacaag
    13141 ttgctgtttt atcaattgct gcgtcaaggt tgaaccaccg ctagatgaac ctagaccaac
    13201 tgatcccagt gccgcacgca aaacagcctt aggcacaacc ccattgtggg tttcaaatgt
    13261 ttcatcctct gtcgcaatta cagcctgttt tagataattc gagacctcct ccgaagtaat
    13321 aggtacgcga agcagatctg aattaacttc cgacaccaag ctaccatccg aataggtaac
    13381 ggtggaaatc cgactaactt ctgaaacctt cgctaccagt tcctctgttt tgggaatctt
    13441 aacgtcatca aaaagactaa ccacgaaacc aattcctatg cccgcaccaa aaagaccgaa
    13501 taggaacacc aagacagcta ctgaattgaa taataatttc agcgtccgaa ggaaaactcc
    13561 tactacatcc cctaagacta gggcactgat tttcttttta aaatcttgct tatctgattt
    13621 agtcgccata ttaactcctt atcgttccat tataccaaat tttgtttatt ttccgcaatt
    13681 tcgtggtata atagggagga attttttaaa atgaagttcg gtccaaaaat catataaaat
    13741 ggtttatggt cctgtatatt aaacctaaag gagacagccc acatgaacat ttttgaagaa
    13801 ctaaaagctc gtggcttggt ctttcaaacg acagacgaag aagccttggt aaaagcattg
    13861 acagaaggac aggtttctta ttacacagga tacgatccaa cagcagatag tttacacttg
    13921 gggcacttgg ttgctatctt aactagccgt cgcttgcagt tggcaggcca caagccttac
    13981 gccctagttg gcggtgcaac tggtctgatt ggcgaccctt ccttcaagga tgcggagcgt
    14041 agcttgcaaa ccaaagacac cgtggacggc tgggtaacaa aaatccaagg tcagctttct
    14101 cgcttcttgg attttgaaaa tggtgacaac aaggctgaaa tggtcaacaa ctacgactgg
    14161 ttctcagaca tcagctttat cgacttcctt cgtgatgttg gtaaatacta cacggtcaac
    14221 tacatgatga gcaaagattc tgtgaaaaaa cggattgaaa cagggatttc ctacaccgag
    14281 tttgcctacc aaatcatgca gggctatgac ttctacgagc ttaatgacaa gtacaatgtg
    14341 accctacaaa tcggtggttc tgaccagtgg ggcaacatga cagccggtac tgaattgctt
    14401 cgccgcaagg ctgacaagtc tggtcacgtg atgactgttc ccctcatcac tgactcaaca
    14461 ggtaagaaat ttggtaagtc tgaaggcaac gctgtttggt tggatgccga caagacttct
    14521 ccgtatgaaa tgtaccaatt ctggctcaat gtcatggacg atgatgccgt tcgtttcttg
    14581 aagattttta ctttcttgtc attagatgaa atcgctgaaa tcgagaaaca atttgacgct
    14641 gcccgtcatg aacgcttggc tcagaagatt ttggctaggg aagtcgtgac attggttcac
    14701 ggtgaagagg cttataacca agcccttaac atcaccgagc aattgttcgc aggcaatatc
    14761 aaaaacctat ccgcaaaaga actcaaacag ggcctcagca acgttccaaa ctacgctgta
    14821 caggctgaag acaaccttaa catcgtggaa cttctagtta cctctggtat tgtcacttca
    14881 aaacgccaag ctcgtgaaga tgtgcaaaat ggtgccattt atgtcaacgg tgagcgtgtg
    14941 caggacttgg actataccct ttctgacagt gacaagattg acggcgagct gaccgttatc
    15001 cgtcgtggga agaagaagta ttctgtgttg acttattaag atttttcaag gaaatccacc
    15061 atgatttcct tttgttctat caataggaga acagctatga cctgtatttt ttgccatcag
    15121 attgaagaaa tagatattct ctaccagaca gaatatttca aggtggtctg ggacattgac
    15181 cctattcaaa cagggcatct actgattatc agcaaggaac actatgacac gctcagccaa
    15241 atcccttctg ctgttcgcta tgagctatcg gacttggaag tctttttgac tggaaaactc
    15301 tgtcaaacat tggcaattga cggtgtgacc acagcccgca acgatcgctt gtttgatgct
    15361 ggcacccatt tccatgtcca cctgattcca cgctttcgat cagacggctt ctgggaccaa
    15421 atttcacttg cacaagtaca gcttgacctg aacgcctttc tcaaagcatt ataaaaagca
    15481 gcccaacggc tgctttttcg cttatatagt cgtttagttt acttttagta caaggcaacg
    15541 agccgcaggc ataactcaat gctttcttgt ttctaggaga ccagctgatg tacttcgctt
    15601 ttttgttttc aggctcaggt acgaatagtc caccggacta ttcgtatccc ccagactgtt
    15661 tcaatcaggc aaggcgagtt caaacactcc agtggagtgt ttgaagttgg aaataaggaa
    15721 acgacgtttc ctcgctcgtc gaagtaataa aagagaaact aaatgactat accaactctt
    15781 ccacttcata aatagtatct tccagcacct cttggtactg ttccaagtca taggctacag
    15841 tggtttccac ctccgccaac tgctcttcca gctggatttt cacctcttcc accccatcca
    15901 actccaagaa gtgattggtc acatgcttga cacagttttg gcacgataag tttttcaatt
    15961 tcaaagtttg cttcatgttt tttctccttt tgcatgatgc ccacaggtac attgccccgc
    16021 caagcaccga caagcgattt gctcgggtgc agtcctttgt aactgcgaga ttttgctggc
    16081 cagtttttct aggctttttt gagaaaatat ccctgtgtct agcagttttt caaccaattg
    16141 cccctgtttt gtggaacata tggtagctag taagagctcc acctgcccct gcaaatgttc
    16201 ctcttcactg atcagcggat aatagtggta tttgctggtt tccttggcca ttctcaaata
    16261 gtttttcttc cgcaaccgcc ccaagagtgt cttaatggtc gtcgcctgcc aatcaaagcc
    16321 ttcctgcaag gcctgaataa tttcctgaga agtcgcccca ggttgcgccc aaagaacccg
    16381 cataacctgc cactccgcag ctgaaatcgt ctgctccaca ctctcacctc cagccaatca
    16441 gatttctaaa tttagtttac acttgtagtc aaattctgtc aagaagaaag actgaacatc
    16501 ttgcccagtc ttactctctt agtgagccaa catttcctga ccaatttcca aaccagtcaa
    16561 accaactgga tagtaggttg gccaattttc caattcttcc aagagttttt cttggctttc
    16621 tccaccgaaa tagatatgga agtgacccgt tttaacaggt gcaatattgt ggtcgctaaa
    16681 ttgaacatac ttatagttac cagcatttgc atccgttgct tcaaacaaga aacgaacacc
    16741 acgatttcct tttttgtaag tcaaaatctt atagcctaca tacttatacg tgaatttttc
    16801 tttcttatct cccactacaa attccatggt attatctgta atgttaattt gatcaacatc
    16861 tgttttgtag ccagtatcgt aataagcctt gtactcttca gctgtcatac cacctttgat
    16921 cttagccttg taatcccaga cctgatctag tgtaccatca agcaagtatg gataaacaga
    16981 ttgccactca cctgcataat ctgaaagagt acgatctttt acggcactat cttcaaaata
    17041 accgttataa acagtttgcg cagtctcagc accttcttct ggcaaaattt cagaaccttc
    17101 ttgggaagtt gttttttcaa gggcagtcag attatcttcc ataacagaaa tataatcctt
    17161 accatttttc atatcctcat ccgtcaaact ttcaagagga ttaagaacat ccaactgaac
    17221 cccagtctct ttagcaagtg tttctgcaac agattttgac gcattttctt caaaatagat
    17281 atatttaata ccatatttat taatatactc tgtcaattct gctagacgtg atggagtcgg
    17341 atcttcatcc gcagcaacac ctgtaataga aacttgtttc aaaccatagt ccaaagccaa
    17401 atatgcaaat gcagtatgtt gtgtaacaaa gtatttctgt ttcgcagcag ataatgtttc
    17461 agaatattta gcatccaaag catctaattt ctcaatatag gctgccgcat ttgtttcaaa
    17521 ggcatctttc ttttctgggt atttagctac caaactatca cgaatatttt ctacaagtgt
    17581 gatggcacgc tcaggagaca accatacatg cggatcataa gcatggctat gcctctcccc
    17641 actatggtcg tgacctttat gttcctcctc accgccaggc aaaagcaaca tcccctccgt
    17701 cgcactaatc acattaacct ttgttgtgtc aagtgatttt tcaacatcat gaacccatgt
    17761 ttccatattc tcattttcat aaacaaaagc atctgcctct tggatacgag caatatcttt
    17821 agctgacggc tcataaccat gaacctctgt cccagcctta accaacagat caacatttgc
    17881 ctcatcacct gccacctgct tggtgaactc ataaacagga taaaaggtcg ttacaatatt
    17941 caacttccca tcttcagaag ctgtgctatt gccacaagcc cccaaaagca aagctgagac
    18001 agacaagaat aataaaccaa cttttttcat cttaactcct tattttttaa atttttgaac
    18061 aacattcacc agtaagaaaa tactaatgaa aatcaaggta atacttgcac tcgctggggt
    18121 ttctgcatag taagaagtca gcaaccccat gaccattcca aaaaagccaa tgcccatccc
    18181 agtaaagata acagctttaa aactcttacc aagtcgcaat gcaatagaag caggcaaaac
    18241 cataattgtt gaaaccagca aagcacctgc cgcaggaatc attaaggcaa tggcaacacc
    18301 agtcaccaca ttgaaggcaa tggacatagc tcgcacaggt aacccatcta caaatgccgt
    18361 atcctcgtca aaggtaagaa tatacattgg acgtaaaaac agcaatgtca gcacaatgac
    18421 aatcacagca atcgtaaaca aagcaattac ttgctcctga ctaatggtca ctatcgaacc
    18481 aaacagatat tgttccagac taagccctga tttcccacca gatttattca tgacaatgag
    18541 cgaaatagcc aaaccagtcg acatgaggat agccgtccca atttccataa aattcttgta
    18601 aattgtccgc aaatactcta aaaatacagc tgccacaata acgacaagaa cagtcgaaag
    18661 cgtcggtgaa atccccaata ccaaaccaaa tgcaaccccc gccaacgaaa catgactaag
    18721 agtatccgac atcaaactct gccgtctaag tatcaaaaag acccccaaaa tgggcgagaa
    18781 cagactcatc gcaatgattg ccaggaaagc acgctgcata aagtcataat gaaatacaga
    18841 tagatcaaac atgggcaacc tcctcatccg cttcatgaac attgaaacaa cgccaaggag
    18901 actgctgatc acgaaccaag tgaatatttc gatcagcata cttattcagc tcatcaggat
    18961 catgagttat catcaaaacc gactttccat gcttcttagc cgaatggtgc atgagctggt
    19021 aaaaagcatc cttggtccct gcatccatcc ctgttgtcgg ttcatccaga ataaaaatat
    19081 ctggatcaga ggcaaacata cgcgcaatga ccgcacgctg cttctgccca ccactcaaag
    19141 cacctaagcg cttatcccga tgttcccaca ttccaactga ttccaaacta atccgaacat
    19201 gttcctcatc atgggctgtc aaacgacgaa accaaccttg tcgaggataa cgccctgatt
    19261 ttacaaattc gtaaaccgtg ctcggaaaac cagcattaaa acttgcaatt tgctgaggta
    19321 aataggccat tcttagcttc ttacccttta tactcttctc agcaatagaa accttccctt
    19381 gtttgggctt caatatcccc aaagtcgcct taatgagggt tgtcttggct gcgccattct
    19441 caccagtcaa agtcacaaat tccccactat caagataata atgaatatgt tctaaaaccg
    19501 gttctttgtc gtagtaaaac gacaagtctt ccacagtaat atatctcatc tattttctaa
    19561 tcttctccac taactcactt aagaatcgag caattgactc ctgctcttca agactataat
    19621 gttccaaaag ctcttcataa gcttccaagg tatgcgcgtg atgatgagca tgctctgtag
    19681 caatcggctt agcagcctca gtcaaactaa agcgaacaat acgagcgtcc ttatcatctc
    19741 taaccgccac caataacccc tgagcaacta atgactttgt agccttcgtg atcgcagcct
    19801 gactaacatt caactcctta gcaatctcag tattagtata tgcagccttt tcaataagca
    19861 tcaaaatatg ctcctgcgta ttcgtcaact tcaccgtgct ttgacaagaa ccaaccaaaa
    19921 tctccaattg attctccgaa ctcaaaacaa tctcgtgcag gtacttctca atctctaata
    19981 caatacgatt cataggcatc cccttaacct tttaattaac ttgttaagta taccacatag
    20041 aaaacaaaaa aacaaggaaa atatttgaaa gctaaattcc caaagtaagt tctagtctga
    20101 ctcgaaaact agaaactaga ctgagacgaa aaaataaggt agaacttgag aacaataaag
    20161 tacgtttaga attaaagagt ttagttgaaa atggtaaata aaaattactc tttacagtcc
    20221 tattctttac aggtctaaga cttagagaag cactcgcact aacacggcaa gatatcgaac
    20281 tttcgagcaa tacaattcat atcacaaagt ctgtatacgt taataaaggc ataagccata
    20341 tcagtgcaac ttaaactaaa gcaggaacta gaagaaatat catcaataaa aaattaagtc
    20401 aagaactgca atattggtaa cagcaacaaa aacatctatt agagcagttt acaagtgata
    20461 gcatgagcct acaagtgttt caaagtaatc ccattacgat tacaaaaatt caatagaaag
    20521 cagtacaaaa aaattcttga tcgtgatgcg gctcttaaaa agatacgcat acacgatttt
    20581 aagcactcac acgcttctct attgataaat cgaggggaag attatttagt tgtgaaagaa
    20641 aggctaggac acgcttctat aacaactaca atcgatacct attctcactt gtatccaaac
    20701 aagcaaaaag atttagctga taaattagat gacctaattt aaggctttat atttacagta
    20761 ctatcaaata
//
LOCUS       DASGCC010000021        20342 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.021, whole genome shotgun sequence.
ACCESSION   DASGCC010000021 DASGCC010000000
VERSION     DASGCC010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20342
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.021"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(85..1953)
                     /locus_tag="U1404_000526"
     CDS             complement(85..1953)
                     /locus_tag="U1404_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011528775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEM5347505.1"
                     /translation="MTLVTNLKQHSNIITTALCLALILIGILLFQTGQGWAPILFISA
                     FVIGGYQSAKEGISELIFDKHLSVDLLMILAAIGSGLIGYWMEGALLIFIFSLSSTLE
                     ELAMEKSKNAIAALMNMTPPTARKIEENGDITVLDTAAIRIGDLLQVRKGDTVPLDAT
                     LISPQSIFDESMITGEPLPAEKMTGAAVIGGTINQGPTVTVQVTAEKGDALFDKIVQM
                     VENAQESKSKTATFIENMEDTYVKIVLVVVPLFILFAHFALCWDWLTAFYRGMILLTI
                     ASPCALVASSSPATLSAISRAARKGMIIKGGDIADNIANLEAIVFDKTGTLTIGKPEV
                     VDATYLGDEKLIREVVQAVEKQSSHPIAQALMTYTADSSAIALQSLEDVTGKGLVAGY
                     EGDSWKIGKAGFVVDSLVSPLSAGLLAQIDEAESTGKTLVYVSQNDVLVAIFMVEDSL
                     KPESKQLIAQLKEMGVTPILLTGDQEKTARYVASQVGIDRVIANCLPTDKAAVIQKLQ
                     TEFASVGMVGDGINDAPALAQANVSYAMGSGTDIAMESADIVLMEDLTRIPYSIRLSK
                     KMRGIIKQNIIFALSVIALLIVSNLFQSINLPLGVVGHEGSTILVILNGLRLLYFK"
     gene            complement(2115..2570)
                     /locus_tag="U1404_000527"
     CDS             complement(2115..2570)
                     /locus_tag="U1404_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEM5347506.1"
                     /translation="MELHSHFNAENQTAFEHVIQHLKEKGVRITETRKAVVAYIIESD
                     DHPSAEMIYQDLLPNYPNMSLATVYNNLKLLLEEGFVTKLKQTNDNTTYYDFMGHEHL
                     NVICEVCGKITDFMDVEIPSLKKEAHTQTGYKITKEVLSIYGICPDCQG"
     gene            2737..3486
                     /gene="truA"
                     /locus_tag="U1404_000528"
     CDS             2737..3486
                     /gene="truA"
                     /locus_tag="U1404_000528"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEM5347507.1"
                     /translation="MTRYKAIISYDGHDFSGFQRQTHARTVQEEIEKTLVRLNSGQPV
                     TVHGAGRTDAGVHAYGQVIHFDLAGSRDVEKLRFALDTQTPEDIDVVQVEQVADDFHC
                     RYAKHSKTYEFLVDIGRPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTAS
                     GTSVEDKVRTIKAASMEYDQRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQ
                     IKRILAEKDRGLAGPTAAGNGLYLKEIIYED"
     gene            3476..4237
                     /locus_tag="U1404_000529"
     CDS             3476..4237
                     /locus_tag="U1404_000529"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004184219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM5347508.1"
                     /translation="MKTKYILALSGNDIFSGGGLHADLTTYTVHGLHGFVAVTCLTAM
                     TEKGFEVIPTDAAVFAQQLASLKDVPFSAIKIGLLPTVDIAEQALAFVKAHQEIPVVL
                     DPVLVCKETHDTEVSQLRDELLKFLPYVSIITPNLAEAQLLLQKDIETVEEMKQAAVA
                     LYDLGAKAVVIKGGNRLGGSEAIDVFYDGQEVVVLQSPLLSENNVGAGCTFASSIASQ
                     LLLGREPFEAVRLSKDFVYAAIEKSDDYGVIQYEK"
     gene            4227..4712
                     /locus_tag="U1404_000530"
     CDS             4227..4712
                     /locus_tag="U1404_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5347509.1"
                     /translation="MRNKKTQELVLLAILTALSLVLAFVYVPTATGFVTLLDVGVYFT
                     AFYLGKKEGAIVGGLAGLLIDFLLGYPQWAFFSLLFHGAQGYFAGWTGKKRIFGLVLA
                     TLSMVGGYYLASRIYFNDLKAIESVLSNTLQNTVGLVVGYILAQAIERIGAVNHVIKG
                     N"
     gene            4693..5259
                     /locus_tag="U1404_000531"
     CDS             4693..5259
                     /locus_tag="U1404_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01440 family protein"
                     /protein_id="HEM5347510.1"
                     /translation="MSLREIKDQTQQVVQEVLELSNLQKGQIFVLGLSSSEVIGGHIG
                     KNSSLEVGEVVVETILEILDQKGIYLAVQGCEHLNRALLVERELAIQKDLEIVNVLPT
                     LHAGGSGQLAAFKYMKDPVEVEFITAQAGVDIGDTAIGMHIKHVQVPIRPSLREIGQA
                     HVTALASRPKLIGGVRAAYQEDKIRKGS"
     gene            5259..5873
                     /locus_tag="U1404_000532"
     CDS             5259..5873
                     /locus_tag="U1404_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1349 domain-containing protein"
                     /protein_id="HEM5347511.1"
                     /translation="MKEFTVKDLVWTRPPRQFTISDEEITITTHPQTDLWQKTYYHFV
                     NDNAPVLQMETEEDYFSFTVKTDFAGSHTRFDQCGIVLYQDSENWLKCSIEYENDDFQ
                     HLGSVVTNHGFSDWATTEISSQVKSIWFRLSRRGADYCFENSEDGIHFKQMRVCHFHQ
                     GTGKIAFGLYACSPENSSFTARFTNMELSDCKWLPHDGQEPDEI"
     gene            6146..6577
                     /locus_tag="U1404_000533"
     CDS             6146..6577
                     /locus_tag="U1404_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5347512.1"
                     /translation="MDTKFSVALHILTIISESKEILSSQALAESVGTNASYIRKVIAL
                     LKNAGLITSHQGRSGYQLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQH
                     IEGAMVPIFSSVEQDLENQLSRQSLDNVIDNLYQSAQETRI"
     gene            6657..7658
                     /locus_tag="U1404_000534"
     CDS             6657..7658
                     /locus_tag="U1404_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEM5347513.1"
                     /translation="MKAAQHTSYNKNKITLNLTEIAKPQIKPNQVLVKVTAAGVNPLD
                     NMISRGDVKLIVPYKLPQTAGNELVGLIEEVGSSVTTFVAGDRVFGRLPLDSIGAFAE
                     YVAVDAQALAKVPAYLTDEEAAAVPLTALTIMQALDLMGAEAGKTIFISGGTGGVGGM
                     AIPIAKAKGLTVITNGDGASGERVLKLGADRFIDYKTEDYTKTLSNVDYVLDTLGGAE
                     TEKQMSIMEKGGQLVSLRAMPNGEFAKRMNLPKWKQILFGLAGRSFDKMAKKYGVHYH
                     FIFVESNGRQLQEVADIFSKLEIKPSIDTVYPFEEVNAALDKVANGRSRGKTVLSFN"
     gene            7684..8529
                     /locus_tag="U1404_000535"
     CDS             7684..8529
                     /locus_tag="U1404_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5347514.1"
                     /translation="MSYITTKNQYITVSNNKIAYRELSKGKSDIPLVMLVHLAATLDN
                     WDPKLLDLLAEQHHVIVLDLPGVGASQGKVAPTIPGMAEQAVSIIKALGYEKINLLGL
                     SMGGFIAQEIVRLDSQLVNRLILAGTGPRGGFEVDKVTGKTFRYMLKAGLERVDPKRY
                     IFYNHDEAGRLEAEKVLGRMGQRSAAHADKDMNVPGFLTQLKAIKRWGREPQDDMTFI
                     TQPTLIVNGDKDMQVPTENSYTMHEKIKNSQLIIYPNAGHGSIFQNVEDFSKALLAFL
                     EETNA"
     gene            8522..9391
                     /locus_tag="U1404_000536"
     CDS             8522..9391
                     /locus_tag="U1404_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5347515.1"
                     /translation="MPKTILITGSTDGIGKHLAMKLASEGHEVILHGRNSEKFRVALS
                     DIQLKTGNKKIHGYLADFSKLADVYRFSQEIKRDFEQIDVLVNNAGAYFGDARVATAE
                     NIEMTFMLSVQVPYILTTELLPLLEKAVGRVIHTSSFMHHFAQTRGLDFGLEQSYSAA
                     MAYNNAKLYTIWLAIAQAEALEKQGSSVTVNAYHPGLIATNLGNDGVKRNLRSRILTS
                     LMKPFSKDLDQGIETGYYLSLSPEVAGQSGRYFAEKKVAKVSLKGFDVPKSQALLAYL
                     DKKIQVFKESYRD"
     gene            9384..10595
                     /locus_tag="U1404_000537"
     CDS             9384..10595
                     /locus_tag="U1404_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase family
                     protein"
                     /protein_id="HEM5347516.1"
                     /translation="MTKILLENLQLPNGQVLDNRFFKSAMSETMADSQGAPSDDLIAL
                     YDFWAKQGMGVLVTGNIMVDGRYLGEPGNVVLDSDDHLAQFRKWAAVGKKNGVPIWLQ
                     LNHPGKQMYRSINQTPIAPSAIPISGGSASAFRPPREMTVFDIKEARDKFIAAGLRAK
                     EAGFTGVQLHAAHGYLINQFLSPADNQRTDRYGGSLDNRMRFLVEVYQGLRDKVGPDF
                     TIALKLNASDFKEEGFGFEDCKHVVKTMSDLGIDLIEISGGNYETPVFGSEYENGAGF
                     VTYALALADLTSVPIVSTGGFRKVTQMEEAIKDGVSMIGLARPFVLRPSLVNDYRQVG
                     DVQLTTPRLTTGLPKLDKALGPIIGVSYYEAQMKRLAMGKSVTVSQHAWPYLLQTIKA
                     HGLSALKPRRK"
     gene            complement(10862..11371)
                     /locus_tag="U1404_000538"
     CDS             complement(10862..11371)
                     /locus_tag="U1404_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM5347517.1"
                     /translation="MERVKRKESLFVESVVEALWELLEDKSFEKISVSELVERAGIGR
                     VTFYRNFSNKEEVLERSFNMELQAWLSERQIDLSDWSDAHLLLALRQFFDFWYEQQDK
                     IRLLTTNHLDYLLEEVLDRYFKERLGDLTDDFHLQFIVGGFFRVLKTWVARGCKESPD
                     DIMRLMGEQ"
     gene            11514..12632
                     /locus_tag="U1404_000539"
     CDS             11514..12632
                     /locus_tag="U1404_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectin acetylesterase"
                     /protein_id="HEM5347518.1"
                     /translation="MKKVWKIVAAVTVVLALLGFIAYKKTFGWSAPELVAQTPQVNEW
                     YRLSPEGVVDSQGNQAHGLIRTGKEKNKVMVYFFGGGVSINEETASGGTRYFATTTGH
                     QDYVATWGIGSPQEDNPFKDWTMIVLPYGTGDFHAGTQNFSYVDDNGKEQVVHHQGYS
                     NLMSILAAAKPHVGNPDTLLVTGFSAGGFATSLLADDVISHFPTAKNVTVAVDSSFLR
                     HDNWKSIAENVWKTPTSISDRLHSDNIVLDSLVALHEKRGDSVKILFDISYRDGILQQ
                     YQAYIDQGKLADATEESSDHFQKELKKMIQELQSKIDGVGIFIWNYGQDEKTTATQHT
                     TINFSTFFTPMSKDKSVAEWLDDAVNGQVNSYGLELLE"
     gene            12642..13661
                     /locus_tag="U1404_000540"
     CDS             12642..13661
                     /locus_tag="U1404_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5347519.1"
                     /translation="MKKFKKIILWTLGIVASLGIIAYVSVTNHPQLVVGVIQSFMYKE
                     SSPNSYSPLYDPIDGLKENGQYLKSEIAYSKDYPNSFLDITYPDQNLEADRPTLFYFH
                     GGGFFGGSKNMGDPLAASQATYLIDDIVSKGYNVVNVDYALVPDYHFPTPVIQMNQAI
                     AYMKEHAEEYHLNMDNVVLMGSSAGAIMVAQYGSLLANNDYAQLLNIEPSIAKEHVKA
                     LVIDDAPLDYAKFSLSTKLLVGNYVSETIYLSEEEINAYNPISHVNKDYPASFLLGSE
                     YRTDMVSLNKALKQAGVENELVDPLAEEGLEKPHGFVANLRTDPVSAKAFERLITFID
                     DRTKE"
     gene            13883..15166
                     /locus_tag="U1404_000541"
     CDS             13883..15166
                     /locus_tag="U1404_000541"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEM5347520.1"
                     /translation="MSVSFEAKETNRGVLTFTIGQDAIKPELDRVFNKVKKDINLPGF
                     RKGHLPRAVFNQKFGEEALYQDVVNALLPAAYEAAVAEAGLEVVAQPKIDVVSMEKGQ
                     DWTITAEVVTKPEVKLGDYKNLAVSVEATKEVTDEEVDAKIEAARNNLAELVIKEGPA
                     AEGDTVVIDFVGSIDGVEFDGGKGENFSLGLGSGQFIPGFEAQLVGHAAGEEVNVEVT
                     FPEDYQAADLAGKPALFVTKIHEVKAKEVPALDDELAKDIDEEVETLDELKAKYRKEL
                     EAAKEVAFDDAVESAALELAVENAEIVELPEEMIHEEVHRAINEFLGGMQQQGISPDM
                     YFQITGTTREDLHKQYEADAEKRTKTNLVVEAVAKAEGFEATEEEINKEIEDLAATYN
                     MEVAQVRSLLSPEMLKHDIAVKKAVEVITSTATVK"
     gene            15217..16101
                     /locus_tag="U1404_000542"
     CDS             15217..16101
                     /locus_tag="U1404_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5347521.1"
                     /translation="MLQRNSLKNLVRPMQKWENVISVGGVVQVSQGVRITDGEVSHYQ
                     LPWSVLLCLQAIEYDCSFLGSRILLDYLQSNLIISGAFGLFYKEYVIAVGGYDRQTLG
                     EDMELVMKLHYFCKNNNIPYRICYETSAICWSQAPSSIGDLCKQRRRWFLGLYQCLKK
                     YRKMLSRVRFGAVGYFSYAYYMLFEFLAPFIETFGCFVILLSLIYHQLNISFFISLFF
                     LYSAFCSLITFVSFLQRVYSQDLFIGPMDLCKAFLATLFRYFFLHWVLNIVRLTSFIG
                     YKKRKREWGEIKRVKQFV"
     gene            16211..17131
                     /locus_tag="U1404_000543"
     CDS             16211..17131
                     /locus_tag="U1404_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM5347522.1"
                     /translation="MLKKVIRGCFVALFGFVLAACSAQKEASQVQPGMKIVTSFYPIY
                     SLVKEVSGNKNDVRMIGSRQGIHSYEPSAADIKAIYDADVFIYHSRILESWAGRLEPN
                     LQGSSVKVLEASTNLPLTKVPGLEDMEAGQGIDEASLYDPHTWLDPVLVGQEAVSIGE
                     LLAESDPKNADYYRQNAATLEEKAQKLADKYSPIFLKATSKTFVTQHTAFSYTAQRFG
                     LKQLGIAGVSEEEPSPRQLAEIKEFVDTYNVQTIFTEKGASDKLAKALASSTGVDLKV
                     LDPLEADPENNLTYLENLEQVLETLAQELK"
     gene            17165..20320
                     /locus_tag="U1404_000544"
     CDS             17165..20320
                     /locus_tag="U1404_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5347523.1"
                     /translation="MKKKAVVGSVAALVLGMSLCSYQLGRFQAMEEQKNRVSYIEDSQ
                     SVQTTVAEQLTPDQVSAKENIDAEQIVVKITDQGYVTSHGDHFHYYNGKVPFDAIFSE
                     ELVMKDPNYVLQDSHIINEVQDGYVIKVDGKYYLYLKDPSKHKNVRSKEEVERQKGIS
                     SADSKNQAAGNSKDGRYRTDDGYVFNPTDVIEDTGDGFIVPHGDHFHFIPKKDLSATE
                     LKAAQDYWNQKGSVSSASGSQYGDRNNRAQQTTISAGQGQDLASLLAQLDATPLSQRH
                     VEADGLVFDPRTITKKTAAGVIVPHGDHYHFIPYSQMSPLEEKISRMIGVNGAGVSSG
                     AQASHSQHTPTQPNRPVTPIGTVTTQPVSPTQPVLPTQPKQSTGKVVSYMGRQIPAYG
                     KGLDGKAYFTSDGYTFSKDSITSVDDQGLIASHGDHFHYVGFGELEDFEIKQVEEWVN
                     EKAGKQVPPKTSEQVGNDAKPTKPSQGNDSKPVKPIQEENRPAFEYKQVTAKRKLAGK
                     VVYEMEVGGKTYTYGRDELDLMKISFAELTLAEKDKQYIFDIAPLAEGDLKPAMLVGM
                     DQIPMKGANATYDTGQSFIIPHIDHIHVLPYTWLSKEQIATIRYIMQHPEIRPSAWTT
                     SGHGDGEATDLVPPILNATPKANRLGLKNWQIIHTAEEVMDARAKGKFATNDGYIFSA
                     EDVLDPASFVFSQAFSLPRATGGSLRSISKKDLSKEELEAVQTLLDKRDAEELAQNVT
                     PIEKRAGLKNWQIVHSAEELAEAKAAGKYTTKDGYIFDPADLLDPKVKIGTDNYRIPR
                     VITDGYRRINKSDLNYLSELIPAEAMVAQREKSNSSSPSTPAPTETGASAGETTKPEQ
                     PQVAKETAEEIYNRVEAKKVVPFEALTYNAGYATEVRNGTLVIPHQDHYHYVSFKWFD
                     QGSARSPEGYSLEDFLATVKYYMTNPQERPVSDDGWGVFTPNTPSESTEETETEESDE
                     EIISEETEEIDEFTEELKRRAEEFGMDFKTFEQSLVTLSDRYKVSFEAFEYDAASKVV
                     RLVDKDGVKRTISLPSLEEQV"
BASE COUNT         6037 a         4135 c         4713 g         5457 t
ORIGIN      
        1 ttataaaaca ataattttta gaatgcaagc gtttttttaa aaaaagaata ataagaaaac
       61 cgccaagtag ctggcggttt gaagctattt aaaatacagt aatctcaacc cattcaaaat
      121 caccaaaatc gttgatcctt cgtggcccac cacaccgagt gggaggttga tagactggaa
      181 gaggttggaa acgataagaa gagcaatgac ggacagagca aagatgatgt tctgcttgat
      241 gatgccccgc attttcttag agagacgaat ggagtaagga attctcgtca ggtcttccat
      301 gagtacgatg tcagctgact ccatagcgat gtccgtaccg cttcccatag catagctgac
      361 attggcttga gcaagggcag gagcatcgtt gataccgtct cccaccatac cgactgacgc
      421 aaactcggtt tgcagttttt ggataacagc agccttatcc gtcggcagac agttggcaat
      481 cacacggtca ataccgacct gactcgccac gtaacgagcc gtcttttctt ggtcacccgt
      541 caagagaatt ggcgtcacgc ccatctcttt caactgggca attagctgct tgctctcggg
      601 tttcaaacta tcttccacca tgaagattgc caccagcaca tcattttggc tgacatagac
      661 cagggttttc ccagtacttt ccgcctcatc gatctgtgcc agcaagccag cagacagggg
      721 actcaccagg ctgtccacca caaatcctgc cttacctatt ttccagctgt cgccctcata
      781 gccagccacc aagccttttc cggtcacgtc ttctaggctt tggagggcaa tagcagagct
      841 gtcagccgta taggtcatga gagcctgagc gattgggtgg cttgattgtt tttcaactgc
      901 ctgaacaact tccctgatta gtttttcatc gccaagatag gtcgcgtcta caacttcagg
      961 tttaccaatg gtcagggtgc ccgtcttgtc aaagacgatg gcttctagat tggcgatgtt
     1021 atccgcaata tcaccaccct tgataatcat acccttgcgt gccgcacggc tgatagcaga
     1081 aagtgtcgcc ggcgaagaag aagctacgag ggcgcatgga gaagcgatgg tcaagagaat
     1141 catgccacgg tagaaggcag ttaaccagtc ccagcacaga gcaaaatgag caaagagaat
     1201 gaagagtggt accaccacca agacaatctt gacataggta tcttccatat tttcaatgaa
     1261 agtcgctgtt tttgatttgg attcttgggc gttttcaacc atttggacga ttttatcgaa
     1321 gagggcatcg cctttttcag ccgtaacttg tacggtcaca gttggacctt ggttaatggt
     1381 tccgccgata acagcagcgc cagtcatttt ctccgcaggg agcggctcgc ctgtaatcat
     1441 ggattcgtca aagatggatt gcggactgat gagggtagca tccagtggga ccgtgtcacc
     1501 cttgcggact tgcaggaggt cgccgatgcg gatggctgcg gtgtctaaga cagtaatgtc
     1561 accattttcc tcgattttgc gagccgttgg aggcgtcatg ttcatcagag ctgcaatagc
     1621 attcttgctt ttttccatgg ctaattcttc cagagtagaa gaaagggaga agatgaagat
     1681 gagtagagcc ccttccatcc agtagccaat tagaccagag ccgatagcag ctaaaatcat
     1741 gagcaggtcg acagacaggt gcttgtcgaa aatcagctca gaaatgcctt ccttggctga
     1801 ctggtagccc ccgatgacaa aggctgagat gaagaggata ggagcccatc cctgtccagt
     1861 ctgaaacaga aggataccta ttagaatgag cgccaagcag agagcggtcg tgatgatgtt
     1921 gctgtgttgt ttgaggttgg ttacgagtgt catagtttgc tcttccttat ttagaattat
     1981 tatcatttaa ctaagttaat tataacaatt ataaaaagaa agtcaaggta tttataataa
     2041 ttctaaataa gactgttctg ataattcaaa ggaaaataaa aaaagcgaca gaaagccgct
     2101 ttgatattcg tcttttagcc ctgacaatca ggacaaatgc cgtagatgga tagcacctct
     2161 tttgtaattt tgtaaccagt ttgggtatga gcttccttct tcaagctcgg gatttctaca
     2221 tccatgaaat cagtgatttt tccacagact tcacaaataa cattgaggtg ctcgtgcccc
     2281 ataaagtcgt aataagtagt attatcattg gtctgtttca atttggtcac gaacccttct
     2341 tccaatagaa gtttgaggtt gttgtaaaca gtcgccagac tcatgttggg gtagttaggt
     2401 agtagatctt gataaatcat ttcagcacta gggtggtcat cgctttcgat aatgtaggca
     2461 acgactgctt ttctagtttc ggtaatgcgc acaccctttt cttttagatg ttggatgacg
     2521 tgttcaaaag cagtttggtt ttctgcattg aagtgagaat ggagttccat agtttcctcc
     2581 tttcgttatt attttataaa aattctaaga tacaatattc agtttcatta tagtgtattt
     2641 gggaggttgt gtcaattttg agacaggaaa tctgtcatag gacagtttgg tgtctcatga
     2701 cttgtttaca tacttttcct gtgctacaat caaaacatga caagatataa ggcaattatt
     2761 tcctacgacg gacatgattt ttctggtttt cagcgccaga cccatgcccg tacagttcag
     2821 gaagaaatcg aaaaaacgtt agtaagattg aatagtggtc agccagtaac cgttcatggt
     2881 gcaggtcgta cagatgcagg ggtacacgcc tacggtcagg ttatacactt tgacttggct
     2941 ggcagtcgag atgtggagaa gctccgcttt gccctggata cccaaacccc tgaggatatt
     3001 gatgtggtcc aggtggagca ggtggcggat gattttcatt gccgctatgc caagcacagc
     3061 aagacctatg agtttctggt ggatatcggg cgacccaaga atcctatgat gcgccactat
     3121 gcgacctttt atccttatga tttggacttg agtttgatag aagaagccat tcaggacttg
     3181 gtggggaccc atgactttac aggctttacg gcttcgggga catcggttga ggacaaggtg
     3241 cggaccatta aggcggcaag catggaatat gaccagcggc ggcagttctt gatttttaca
     3301 ttttcaggca atggtttttt gtacaagcag gtgcggaata tggtcgggac cttactgaaa
     3361 attggtaacg gtcgcatgcc tgtgggacag attaagcgga ttttagcaga aaaggatcgt
     3421 ggtttggcgg gaccgactgc ggcaggcaat ggcctctatc taaaggagat tatctatgaa
     3481 gactaagtat attttggcgc tttcgggcaa cgatattttc agcggtggcg ggctccacgc
     3541 agatctgaca acctacacag tccatggtct gcatggcttt gtggcggtga cttgcttgac
     3601 agctatgacg gaaaaaggtt ttgaggtcat tccgacagat gcggcggtgt ttgcccagca
     3661 actggctagt ttgaaggatg tgcccttttc tgcgattaag atcggcttgc ttcctacggt
     3721 ggacatagca gagcaggctt tggcgtttgt caaggctcac caggagattc ctgtggtctt
     3781 ggatccggtc ttggtctgca aggaaacgca cgataccgag gtcagccagt tgagagatga
     3841 actcttgaaa ttccttcctt atgtcagcat tatcacacca aatctggcag aagctcagct
     3901 attactccaa aaggatatcg aaacggtgga agagatgaag caggcggcag tggccttgta
     3961 tgacttggga gccaaagcgg tggtcatcaa gggaggcaat cgtctgggtg gctcagaggc
     4021 gatcgatgtt ttctatgacg gtcaggaagt ggtggtgctc cagtcgcctc tgctgtcaga
     4081 aaacaatgtg ggggcaggct gtacctttgc atccagcatt gccagtcagc ttttgctggg
     4141 aagagaacct ttcgaggcag tcagactgtc caaggatttt gtctatgcgg cgattgaaaa
     4201 atcagatgat tatggggtga ttcaatatga gaaataaaaa aacacaggaa ttagtattat
     4261 tagctatctt aacagctttg agcttggtat tagcctttgt ttatgtgcca actgcaactg
     4321 gttttgtcac actcttggat gttggggtat attttacagc cttttacttg ggcaagaaag
     4381 agggagcgat tgtcggcggt ttggcagggc tattgattga cttcttgctg ggctatcccc
     4441 agtgggcttt ctttagtttg ctcttccacg gggctcaagg ttattttgcg ggttggacag
     4501 gtaagaaacg gattttcggt ttagtcttgg cgaccctctc tatggtgggg ggctattacc
     4561 tagcatctcg gatttatttt aatgacctca aagccattga aagtgttcta agcaatacct
     4621 tgcaaaacac agttggtttg gtagttggtt acatcttggc tcaggcaata gaaagaattg
     4681 gtgcagtaaa tcatgtcatt aagggaaatt aaagaccaaa ctcagcaagt tgtgcaagaa
     4741 gtcctagaac tcagcaatct tcaaaaggga cagatttttg tcctaggatt gtcctctagt
     4801 gaggtcattg gtgggcatat tggcaaaaat tccagtctgg aagttggtga ggtggttgtt
     4861 gaaaccatct tggaaatcct ggatcaaaaa ggtatctatc tagctgtcca aggctgtgaa
     4921 cacctcaatc gtgccttgct ggtggagcgg gaattggcaa tccagaagga tttggaaata
     4981 gtcaatgtcc tgccaaccct tcatgcaggt ggttctggtc agttggcggc cttcaagtat
     5041 atgaaggacc cggtggaagt cgagtttatc accgctcagg ctggtgtaga catcggcgac
     5101 acagctatcg gcatgcacat caagcatgtc caagttccga ttagacctag cctgcgtgaa
     5161 attggacagg cccatgtcac agctcttgcc agccgaccaa aactaatcgg cggagtccga
     5221 gcagcctatc aggaagataa gatacggaaa ggttcataat gaaagaattt acagtcaagg
     5281 atttagtgtg gacccgtcca ccgagacaat tcactatttc agatgaagaa attaccatta
     5341 ccacccaccc ccagacggat ttgtggcaga agacctatta ccattttgtg aatgacaatg
     5401 ctcctgtctt gcaaatggaa acggaggagg actatttttc ctttactgtg aagacggatt
     5461 ttgcgggtag tcatactcga tttgaccagt gtggaattgt cctttatcaa gattcggaga
     5521 attggctcaa atgttcgata gaatatgaaa atgatgactt ccaacacttg ggaagtgtgg
     5581 tgaccaatca cggcttttct gactgggcaa ctactgaaat cagttcccaa gtcaaatcca
     5641 tttggtttag gctcagtcgc aggggagctg attactgttt tgaaaattcc gaagacggta
     5701 tccacttcaa acaaatgcgg gtttgccatt ttcatcaagg gacggggaaa atagcttttg
     5761 ggctatatgc ctgttcgcca gaaaactcca gttttacagc tcgctttacc aatatggaat
     5821 tgagcgactg caaatggttg ccccatgacg gacaagagcc agatgaaata tagtgagagt
     5881 cataggtaag tagtaacaga aaaatagttg aaactcatat tcttcgaaaa tcaaaaagat
     5941 ccgttgtcaa cttgccttga agaactcctg ttcaatcttc gccttcgttt cctaggcgac
     6001 ttttgatttt cattgagtat caggaagtaa ctttcgacta gtaagagagt tacttttttt
     6061 atcttttgat ccaaatcctt gccaagaagt ctggcttgtg ataaacttgc tcctgtaagt
     6121 gatacaagaa cagaaaggaa accagatgga tacaaagttt tcagtagccc ttcatatact
     6181 gaccataatc agtgagagca aggaaatact tagctcgcaa gccttagctg agagcgttgg
     6241 caccaatgcc agctacatcc gcaaggtgat tgcacttttg aaaaatgcag gcttaatcac
     6301 ttcgcaccaa gggcgatcag gctaccaatt gagcaagtcc cctaaggata ttagcttatt
     6361 ggaaatctac cttgctacgc aagaagtgga gcatattcga ctatttcaga tacaccagaa
     6421 tgccaatctt acttgtccag ttgggcagca tatagaaggt gcaatggttc ccatcttttc
     6481 cagcgttgaa caagatctgg aaaatcaact cagtcgtcaa tccttagata atgtgattga
     6541 taatctctat caatccgcac aagaaacccg aatctgacct cggtcagatt ttattaactc
     6601 aaacatagac ctgtaattga tacaggaaca aaccaaagaa tagaaaagag taaaccatga
     6661 aagcagcaca acacacatct tataataaaa acaagatcac ccttaacctt acagaaattg
     6721 ctaaaccaca aatcaaacct aaccaagtcc ttgtcaaagt gaccgcagca ggcgttaacc
     6781 cattggacaa catgatttct cgcggagatg tgaaattgat tgttccttat aaattgccac
     6841 aaacggctgg aaatgaacta gttggcttga ttgaagaagt aggttcaagc gtgacgacat
     6901 ttgtagcagg tgatcgtgtc ttcggccgtc ttccacttga tagtatcggt gcttttgctg
     6961 agtatgtagc ggttgacgct caggctcttg ctaaggttcc tgcctacttg acagatgaag
     7021 aagcggctgc tgttcctttg acagccttga ccatcatgca ggcccttgac ctcatgggtg
     7081 ctgaggcagg caagaccatc ttcatctcag gcggaactgg tggtgtcggc ggtatggcta
     7141 ttccgattgc caaagccaag ggcttgaccg ttatcacaaa tggtgacggt gcaagtggtg
     7201 aacgtgtctt gaaactcggt gcagaccggt ttatcgatta caagacagaa gattacacca
     7261 aaacacttag caatgttgac tatgtcttgg acacactcgg tggtgcagaa acggagaaac
     7321 aaatgtccat catggaaaaa ggtggacagc tggtttccct tcgtgccatg ccaaatggtg
     7381 aatttgccaa acgtatgaat ttgccaaaat ggaaacaaat cttgtttggc ctagctggtc
     7441 gttcatttga caaaatggct aagaaatatg gtgttcacta ccatttcatt ttcgtagaga
     7501 gcaatggtcg ccagctgcaa gaagtagcag acattttcag caagctcgaa attaaaccgt
     7561 caatcgatac cgtttatcca tttgaagaag tcaacgcagc actggataag gttgccaacg
     7621 gtcgttcacg cggaaaaacc gtcctcagtt tcaactaaaa gataaaatat acagggaaac
     7681 atcatgtcat atattacaac taaaaaccaa tacatcaccg tttcaaacaa taaaattgcc
     7741 taccgtgagc tcagcaaggg caagtctgat attcctttgg tcatgctggt tcacctagcc
     7801 gcgaccttgg acaactggga tccaaaatta ctggatttgc tggctgaaca gcaccatgta
     7861 attgtcctag accttcctgg cgtaggagct agtcaaggca aggtggctcc gactattcca
     7921 ggaatggctg agcaggctgt ttccattatc aaggctttgg gttatgagaa aatcaatttg
     7981 ctgggtctgt ctatgggtgg tttcattgct caagaaatcg ttcgtctgga tagtcagctg
     8041 gtcaaccgtt tgattttagc aggcacaggt cctcgtggtg gttttgaagt cgataaggtg
     8101 actggaaaaa ccttccgcta catgctgaag gctggtttgg agcgtgtgga tccaaaacgc
     8161 tacatcttct acaatcatga tgaggcaggt cgtttggagg cagaaaaagt cttgggtcgt
     8221 atggggcaaa gaagtgctgc tcatgcagac aaggacatga atgttccagg atttttgacc
     8281 cagctgaaag ctatcaaacg ctggggaaga gagccgcaag atgatatgac ctttatcacc
     8341 caaccaactc tgatcgtcaa cggtgataag gatatgcagg ttccaactga aaattcctat
     8401 accatgcatg agaagatcaa aaatagccaa ctgatcatct atccaaatgc aggacacggc
     8461 tctatcttcc aaaatgtaga ggatttttcg aaagccttac tagccttttt ggaggaaacc
     8521 aatgcctaaa accattttaa tcactggttc gacggatgga atcggcaaac acctagccat
     8581 gaaactagct agtgaaggcc atgaagtgat cttgcacgga cgaaatagcg aaaagttccg
     8641 tgtagccctc agtgatattc aactaaaaac aggaaataaa aagattcacg gctatcttgc
     8701 agatttttcc aagttggcag atgtctatcg tttcagccaa gaaattaaac gcgattttga
     8761 gcagattgat gtcttggtaa acaatgcagg agcttacttt ggtgatgctc gcgtggcaac
     8821 ggcagaaaat atcgagatga cctttatgct gtctgtccaa gttccctata tcttgacgac
     8881 ggagttgctg cctttgctgg aaaaagcagt aggtagggtc attcatacct cttccttcat
     8941 gcaccatttt gcacaaacca gaggcttgga ttttggttta gagcagagct attctgcagc
     9001 tatggcttac aataatgcca agctatacac catttggctg gccattgctc aggcagaggc
     9061 cttagaaaag caaggttcat ctgtgactgt caatgcctac catcctggct tgattgcgac
     9121 aaatttgggc aatgatgggg tcaaacgcaa cctgagaagt cggattctta ccagtctgat
     9181 gaaaccattt tccaaggatt tggaccaggg gattgaaaca ggttattact taagtttgtc
     9241 accagaggta gctgggcagt caggtcgcta ttttgcagag aaaaaagtgg caaaggtcag
     9301 cctaaaaggc tttgatgtgc caaagagcca agccttacta gcctatcttg ataagaaaat
     9361 ccaagtattc aaggagagct accgtgacta agattttgtt agaaaacctc caactgccca
     9421 atggtcaggt tttagacaat cgctttttca aatccgccat gagcgaaacc atggcagata
     9481 gtcagggagc tccctcagat gacctgattg ccttatatga tttttgggcc aagcagggaa
     9541 tgggtgtcct agtgacaggg aatatcatgg tggacggccg ctaccttggt gagccgggca
     9601 atgtggtcct tgattcagac gatcatctgg ctcaatttcg gaaatgggca gccgttggga
     9661 aaaagaacgg tgtgcctatc tggctccagc tcaatcaccc tggcaaacag atgtatcggt
     9721 cgatcaatca aactccgatt gcacccagtg ctattccaat ttctggaggt tcagcttcgg
     9781 cctttcgccc accgagagaa atgaccgtgt ttgacatcaa agaagctaga gataaattta
     9841 ttgcagcagg ccttcgggca aaagaagcag gatttacagg tgtacagtta catgctgcac
     9901 atggttactt gatcaatcaa ttcctctcac cagcagataa tcagcggacg gaccgctatg
     9961 gtggcagtct ggacaatcgc atgcgattct tggtggaagt ctatcaaggt ctgcgtgaca
    10021 aagtgggacc agattttacc atcgccttga aattgaatgc ttctgatttt aaggaagaag
    10081 gctttggttt tgaagattgt aagcatgtgg tgaaaaccat gtctgacttg ggtatcgacc
    10141 tgattgaaat ttcaggtggc aattatgaga cacctgtttt tggcagtgag tatgagaatg
    10201 gtgctggatt tgtcacctac gccctagcct tagcggattt gacttctgtt cctattgttt
    10261 caacaggcgg tttccgaaaa gtcactcaga tggaggaggc tatcaaggat ggtgtgtcca
    10321 tgattggcct tgctagaccc tttgtccttc gtccaagtct tgtcaatgat taccgtcaag
    10381 tcggtgatgt gcaactgaca acgcctcgcc tgacaacagg tcttccaaaa ctagataagg
    10441 ctcttggtcc cattatcggt gttagttatt acgaggccca gatgaaacgc ttggctatgg
    10501 gaaaaagtgt caccgtcagt caacatgcct ggccctatct tctccaaacc atcaaggcac
    10561 acggtctgtc agccttgaaa ccgaggagga agtagaatga tgctaatcat gacgatacta
    10621 aattaatttt aaagctactt ttacaatgcg tgtatgagta gctttatttt cattatagat
    10681 attcgattga ggagaggttc aagcctaacg ccgcttctca agatttgtat tacagtactt
    10741 gaaatcatta ttaaaaatat ccagagagat gatattatgc acaaaaaaga cttagagtga
    10801 ctgaaaaaca gttgcctaag tctttttgct tggtctggtc aagaacattg acaagcttgc
    10861 tctattgctc acccatcaac cgcatgatgt catcagggct ttccttacag cctctagcaa
    10921 cccaggtttt aagcactcgg aaaaatcctc ctacgataaa ttgcaggtga aaatcatcag
    10981 tcaagtcccc cagcctttct ttgaaatagc gatccaagac ctcctcgagc aagtagtcca
    11041 aatggttggt agtcaataag cgaatcttat cctgctgctc ataccaaaag tcaaaaaatt
    11101 gccgtaaagc tagtaagaga tgggcatctg accaatccga caagtcaatc tgccgctctg
    11161 acaaccaggc ttgtaactcc atgttgaagg accgttcgag cacctcttcc ttattggaaa
    11221 agtttcggta aaaggtcacc cgaccgatgc cagctcgctc taccaactca gatacactga
    11281 tcttttcaaa agatttgtct tccagcaact cccacaaagc ctccacgaca ctctccacaa
    11341 ataacgattc tttccgcttc actctttcca tgcgaaacac ttcctttcat tatgtttcct
    11401 tttgggcaaa tagcagagct gggactagtt tttccactgt ccatctgcta tactgataaa
    11461 aaacgaaaca cttgtttcta aaaaaatacc ataaaggaca gaaaaaagaa agtatgaaaa
    11521 aagtttggaa aatagtagca gctgtaacag ttgttctagc cttgcttggt tttattgcct
    11581 acaaaaagac atttggctgg tcagctcctg agcttgttgc tcagacccca caagtgaatg
    11641 aatggtaccg cctcagtccc gaaggggttg tagattctca gggcaatcag gcacacggac
    11701 ttattcggac tggtaaagag aagaataagg tgatggtcta tttcttcggt ggcggggtga
    11761 gtattaatga agagactgct agtggtggca cacgttattt tgcgaccaca actggccatc
    11821 aagattatgt tgcgacttgg ggaattggaa gtccgcagga agacaatcca tttaaggact
    11881 ggactatgat tgtgcttccg tatgggacag gagattttca tgcagggacc cagaactttt
    11941 catatgtaga cgataacgga aaagagcaag tagtccatca ccaaggttat tccaatctga
    12001 tgagtatttt agcagcagcc aaaccgcacg ttggcaatcc cgatacactt ctagtgactg
    12061 gattttcagc tggcggattt gcgacctcac tgctagcgga tgatgtcatt tctcattttc
    12121 caacagcgaa aaatgtcaca gttgcagtgg acagttcctt tttgagacat gataactgga
    12181 aaagcattgc ggaaaatgtc tggaaaacac cgacttccat tagtgatcgc ctgcattcag
    12241 acaatattgt tttagatagc ttagtagccc tccatgagaa acgcggggat agcgttaaga
    12301 ttttatttga catttcctat cgagatggaa ttcttcagca atatcaagcc tatattgacc
    12361 aagggaaact agcagatgca acagaagaga gtagtgacca ctttcaaaaa gaacttaaaa
    12421 aaatgattca agaactgcaa tctaagattg atggcgtggg tatttttatc tggaattatg
    12481 ggcaagatga aaaaactacc gctactcagc acaccaccat taacttctca acattcttta
    12541 cccctatgtc taaagacaag agtgtggcag aatggctgga tgatgctgtc aatggacagg
    12601 taaacagtta tggattagaa ctattagaat aggagaacaa catgaaaaaa tttaaaaaaa
    12661 tcatcttatg gacccttggg attgtagcta gtctcggtat cattgcttat gtgtctgtta
    12721 ccaatcatcc gcagttggta gtcggtgtca ttcaatcgtt tatgtacaag gagagttcgc
    12781 cgaactctta tagtcctctt tatgatccca ttgatggttt gaaagagaat ggtcagtatt
    12841 taaaaagtga gattgcctat agcaaggact accctaacag ctttttagat attacctatc
    12901 cagaccaaaa tcttgaagct gaccgtccaa ccctcttcta tttccacggt ggtggattct
    12961 ttggaggcag caagaatatg ggggaccctc tggctgccag ccaagcgacc tatctcattg
    13021 acgatatcgt ttcaaaaggt tacaacgttg tcaatgttga ctatgccctt gttccagact
    13081 atcattttcc aacgcctgtg attcagatga atcaggccat tgcctacatg aaggaacacg
    13141 ctgaagaata ccatttgaac atggataatg tcgtcttgat gggctcatca gcaggtgcca
    13201 tcatggtagc acaatacggt agcctcttag ccaacaatga ttacgctcag ctattgaaca
    13261 ttgaaccaag tattgcaaaa gaacatgtca aagctctggt tatcgacgac gctcccttag
    13321 attacgccaa gtttagctta agcacgaagc tcttggttgg aaattatgtt tcagaaacca
    13381 tttatctaag tgaggaagaa atcaatgcct ataacccgat ttcccatgtg aacaaggact
    13441 acccagctag tttccttctg ggaagcgagt atcggacaga tatggtgtcg ctcaataagg
    13501 ccttgaagca agcgggagtt gaaaatgaat tggtcgatcc tttagcagaa gaggggcttg
    13561 aaaagcctca tggttttgtg gcgaatttac gaactgaccc tgtgtctgcc aaagcatttg
    13621 aacggttgat tacttttata gacgatagaa ccaaggagta gtaggagagt ggataagctg
    13681 gaaactgatg gggatttgtc caatcaatct gccgctctga caaccatgtt tgtactcaga
    13741 aagtctacgc cgaaaaattc caaatgagaa caataagtcc cagctctgcc atttcccaaa
    13801 agtacgttat aaaatcgttg aaatccttgt caattgtgtt ataatgaaga gtatgcaata
    13861 aaattttaag gagaatgaca gaatgtctgt atcatttgaa gcaaaagaaa caaaccgcgg
    13921 cgttttgact ttcacaatcg gtcaagatgc tatcaaacca gaattggacc gcgttttcaa
    13981 caaagttaag aaagatatca atcttccagg tttccgtaaa ggtcacttgc cacgtgccgt
    14041 tttcaaccaa aaatttggtg aagaagcact ttatcaagat gttgtaaatg cattgttacc
    14101 agcagcttat gaagcagcgg ttgcagaagc tggtcttgaa gtagttgcac aaccaaaaat
    14161 tgacgttgtg tctatggaaa aaggtcaaga ctggacaatc actgcggaag ttgtgacaaa
    14221 acctgaagta aaattgggtg actacaaaaa cttggcagtt tcagtagaag ctactaaaga
    14281 agtaacagat gaagaagttg atgcaaaaat cgaagctgca cgcaacaact tggctgaatt
    14341 ggtcatcaaa gaaggaccag cagctgaagg cgatacagtt gttatcgact ttgtaggttc
    14401 aatcgacggc gttgaatttg acggcggtaa aggtgagaac ttctcacttg gacttggttc
    14461 aggtcaattc atcccaggtt tcgaagcgca attggtaggt cacgcagctg gtgaagaagt
    14521 aaacgttgaa gtgactttcc cagaagacta ccaagcagct gaccttgctg gtaaaccagc
    14581 cctcttcgtg acaaaaatcc acgaagtaaa agcaaaagaa gttccagctt tggatgacga
    14641 attggcaaaa gacatcgacg aagaagtaga aacacttgat gagttgaaag ctaaataccg
    14701 caaagaattg gaagcagcaa aagaagttgc ctttgacgat gcagttgaat cagcagctct
    14761 tgaattggct gtagaaaacg ctgaaatcgt tgaattgcca gaagaaatga ttcacgaaga
    14821 agttcaccgt gcaatcaatg aattcttggg tggtatgcaa caacaaggta tctcaccaga
    14881 tatgtacttc caaatcactg gtacaactcg tgaagacctt cataaacaat acgaagcaga
    14941 tgctgaaaaa cgtactaaga caaacttggt tgttgaagca gtggctaaag cagaaggttt
    15001 cgaagcaact gaagaagaaa tcaacaaaga aatcgaagac ttggcagcaa cttataatat
    15061 ggaagtggca caagtacgta gcttgctttc accagaaatg cttaaacacg acatcgctgt
    15121 gaagaaagct gtagaagtaa ttacaagcac tgcaactgta aaataattat ttggaaaact
    15181 cgactctagt cgggtttttt gtttaatcat ctttcgatgt tacaaagaaa ctctctgaaa
    15241 aaccttgtcc gtcccatgca gaaatgggag aatgtcatat ctgttggtgg agtcgtccaa
    15301 gtttcacaag gggtacgaat aactgacgga gaggtcagtc attaccagtt gccgtggtcg
    15361 gtgctcctat gtttacaagc tatcgaatat gactgttctt ttttagggag tagaatttta
    15421 ttggactatt tgcaatccaa tctcatcata tcaggtgcct ttgggttatt ttacaaggag
    15481 tatgtcatag cagttggggg ttatgatagg cagacactgg gagaagatat ggagctagtc
    15541 atgaaattgc attatttctg taaaaataac aatattcctt atcgaatctg ctatgaaacc
    15601 agcgccattt gttggagtca agcaccgagc tctatcggtg atttatgcaa acaacgccgt
    15661 cgctggttct tgggactcta tcaatgtcta aaaaaatacc gaaaaatgtt atcgcgagtt
    15721 cgttttgggg cggtgggata tttttcctat gcttactata tgctatttga atttttggct
    15781 ccgtttatag agactttcgg ttgtttcgtg attctactgt cgttgatcta tcaccaacta
    15841 aacatctcat ttttcatatc gctctttttc ctctatagtg ctttttgctc actaatcacc
    15901 tttgtgtcat ttttgcaacg cgtctactcg caagatttat ttattggacc tatggatttg
    15961 tgtaaagcct tcctggcaac cttgtttaga tattttttct tgcattgggt attgaatatt
    16021 gtccgtctga caagttttat tggatataaa aagagaaagc gtgaatgggg agaaatcaaa
    16081 cgagtgaaac aattcgttta agtaaaggta agactggctt ataaaaagaa agtcttatct
    16141 ttttttaaaa aaatacttga ctggttaata ttcttgtgat ataattaact ggttaacaaa
    16201 ggaggtagtt atgttaaaga aagtgataag aggctgtttt gttgctttat tcggttttgt
    16261 tttagcagct tgctcggctc agaaggaagc gagtcaagtg cagccaggaa tgaaaatagt
    16321 cacctcattt tacccgattt attcactggt taaggaagtg tcagggaata aaaatgatgt
    16381 tcgaatgatt ggctcaagac agggtataca ctcttatgaa ccatcggctg cggacataaa
    16441 ggccatatac gatgcagatg tttttatcta tcattcgcga attttggaat cctgggcagg
    16501 acgtttggaa cctaatttgc aaggttcatc tgtcaaggtt ttggaggctt cgacaaattt
    16561 accgctgaca aaggttccag ggttagaaga catggaagct ggtcaaggga ttgatgaagc
    16621 tagtttatat gacccccaca catggctgga tccagttttg gttggtcagg aagctgtttc
    16681 gattggtgaa cttttagcag aaagtgatcc taagaatgcg gattattatc gtcaaaatgc
    16741 cgcaacttta gaggaaaagg cgcaaaagtt ggcagacaag tatagcccaa tctttttaaa
    16801 agccacatca aaaacatttg tcactcaaca tacagccttc tcttacactg cacaacgctt
    16861 cgggttgaag cagttgggaa tcgcaggagt ttcagaggaa gagccaagtc ctagacagtt
    16921 ggcggaaatt aaagaatttg ttgacaccta caatgtgcaa acaattttta cagaaaaagg
    16981 tgcctcggat aagcttgcca aggcattggc gagttcgaca ggtgtagatt taaaagtgtt
    17041 ggatcctctt gaagcagatc cagaaaataa tttaacctat ctagaaaatc tagagcaagt
    17101 cttagaaaca ttagctcaag agttaaaata aaataccgaa ttctatcgac cgaaaggaga
    17161 aaaaatgaag aaaaaagcag ttgttggctc cgtagccgcg cttgttttag ggatgagtct
    17221 ctgtagctat cagcttggac gtttccaagc gatggaagag caaaaaaatc gtgtgtccta
    17281 tattgaagat agtcaaagtg tacaaactac cgttgctgaa caattaacac ctgatcaagt
    17341 ttctgccaag gaaaatattg acgctgagca gatagtcgtt aaaattactg atcaaggcta
    17401 tgtgacatca cacggtgacc atttccacta ctataatggt aaagtccctt ttgatgcgat
    17461 ttttagtgaa gagttggtca tgaaggaccc aaactatgtc ttacaagaca gtcacatcat
    17521 caatgaagtc caggatggct acgtcataaa agttgatggg aaatactatc tctatctaaa
    17581 agaccctagc aaacataaaa atgttcgtag caaagaagaa gtggagcggc aaaaaggaat
    17641 ctcttctgct gacagcaaaa atcaggcagc aggaaatagt aaagacggcc gctacagaac
    17701 agacgatggc tatgtcttta atccgacaga tgttattgaa gacacgggag atggttttat
    17761 cgttccgcac ggcgaccatt ttcactttat tcctaaaaaa gatttatcag ctaccgaatt
    17821 gaaggctgct caagattact ggaatcaaaa aggaagtgtg agctcggcta gtggtagtca
    17881 atatggcgat agaaataata gagctcaaca gacaacaatt agtgcggggc aaggtcagga
    17941 tttggctagt ttattggctc aattggatgc aacaccccta tctcaacgcc atgtagaagc
    18001 agatggattg gtatttgacc caagaacgat tacgaagaaa accgcagcag gtgtcatcgt
    18061 tccacacggc gatcattacc actttattcc atacagccag atgtctcctc tagaagagaa
    18121 gatttctcga atgattggtg taaatggagc aggtgtttct tctggtgcac aagcaagtca
    18181 ctcccaacat acaccaacac aaccaaatcg tccagtaaca ccaatcggca cggttacaac
    18241 gcaaccggta tcgcctacac aaccagtatt accaacacaa ccgaagcagt caacagggaa
    18301 agtggtttcc tatatgggac gtcaaattcc tgcttacgga aaagggttag atggtaaggc
    18361 atattttaca agtgatggat acacctttag caaagactct attacctcag ttgatgatca
    18421 agggctgata gctagtcatg gagatcattt ccattatgtt ggttttggcg aactcgaaga
    18481 ttttgaaatc aagcaagtag aggaatgggt taatgagaag gcgggcaaac aagtgccgcc
    18541 gaaaacatct gaacaagtag gaaacgatgc taaacccaca aaaccaagtc aagggaatga
    18601 ttcaaaacct gtaaaaccaa ttcaagaaga aaatcgccct gcatttgaat acaaacaagt
    18661 aacggctaaa cgtaaattgg ctggaaaagt tgtttatgaa atggaagtag gtggaaaaac
    18721 ttatacatat ggtcgtgacg aactagattt gatgaaaatc tcttttgctg agttgacttt
    18781 ggcagaaaaa gataagcagt atatctttga tattgcaccg cttgcagaag gagatcttaa
    18841 gccagccatg ttggtcggta tggatcaaat tccgatgaag ggagcgaatg caacctatga
    18901 tactggacaa tcctttatta ttccacacat tgatcacatc cacgtcctac cttacacatg
    18961 gttgagtaag gaacaaattg caacgatccg ctatatcatg caacatcctg aaattcgtcc
    19021 atctgcttgg actacaagtg gacatggtga tggagaagca acggatcttg ttcccccaat
    19081 tttaaatgca acacctaaag ccaaccgctt aggcttgaaa aattggcaaa tcattcacac
    19141 agcagaagaa gtcatggatg cacgtgcaaa agggaaattt gcgacaaatg atggctatat
    19201 cttctcggcg gaagacgtac tagatccagc aagttttgtc tttagtcaag cgttcagtct
    19261 accaagagcg acaggtggtt ctctgcgttc aatttccaag aaagatttat ctaaagaaga
    19321 attggaagct gtacaaactc ttcttgataa acgagacgct gaagaattgg cgcaaaatgt
    19381 cacaccgatt gagaaacgtg caggtttgaa aaattggcaa attgttcact cggcagaaga
    19441 gttggcagaa gctaaggcag caggaaaata tacaacgaaa gatggctata tttttgaccc
    19501 agcagatcta ttagatccca aagtgaaaat aggtacggat aactatcgca tcccacgtgt
    19561 gattacagat ggttatcgtc ggattaacaa gagtgatttg aattacttaa gtgagctaat
    19621 cccagcagag gctatggtgg ctcaacgtga gaaatctaat tctagttcac cgtcaacacc
    19681 tgcaccaact gaaacaggag caagtgcagg cgagacaaca aagccagaac agccacaagt
    19741 tgccaaagaa acagcagagg aaatttataa ccgagtggaa gcgaagaaag tcgttccttt
    19801 cgaagcactg acctacaatg ctggctatgc gaccgaagta cgtaacggga ctctggtaat
    19861 tccgcatcaa gatcactatc actatgtatc ctttaaatgg tttgaccaag gtagtgcaag
    19921 aagtcctgaa gggtatagtt tagaagattt cctagcaacg gttaagtact acatgactaa
    19981 tccacaagaa cgccctgttt cagacgatgg ctggggagta tttacaccaa atacaccatc
    20041 tgaatcaaca gaagaaacag agacggaaga aagtgatgaa gaaattattt ctgaggaaac
    20101 cgaggaaatt gacgagttta cagaagaatt aaaacgaaga gcagaagagt ttggcatgga
    20161 cttcaaaacc tttgaacaaa gtctggtcac actctcagac cgttacaaag tttcttttga
    20221 agctttcgaa tatgatgcag caagcaaagt tgttcgactt gtagataagg atggggtcaa
    20281 acggaccatc tcccttccaa gtttagaaga acaagtatag taaacaaaat acctgtagcg
    20341 ct
//
LOCUS       DASGCC010000022        20245 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.022, whole genome shotgun sequence.
ACCESSION   DASGCC010000022 DASGCC010000000
VERSION     DASGCC010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20245
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.022"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            28..426
                     /gene="spx"
                     /locus_tag="U1404_000545"
     CDS             28..426
                     /gene="spx"
                     /locus_tag="U1404_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HEM5347524.1"
                     /translation="MIKIYTVSSCTSCKKAKNWLNAHQLSYNEHNLAKEAITKEEILN
                     ILTKTENGIASIVSSKNRYAKSLDFDIEELSVNEVIDLITSNPRILKSPILIDEKRLQ
                     VGYKEDDIRAFLPRAVRNVENAQARMRAAL"
     gene            526..792
                     /locus_tag="U1404_000546"
     CDS             526..792
                     /locus_tag="U1404_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HEM5347525.1"
                     /translation="MGFTEETVRFRLDDTDKQEISKTLTSVYRSLEEKGYNPINQIIG
                     YVLSGDPAYIPRYNDARNQIRKHERDEIIEELVRYYLKGNGIDL"
     gene            792..1211
                     /gene="ruvX"
                     /locus_tag="U1404_000547"
     CDS             792..1211
                     /gene="ruvX"
                     /locus_tag="U1404_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEM5347526.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLER
                     LTELVEQYKVDKFVVGLPKNMNNTSGPRVEASQAYGDLLTERYKLPVDYQDERLTTVA
                     AERMLIEQADISRGKRKKVIDKLAAQLILQNYLDRTF"
     gene            1223..1543
                     /locus_tag="U1404_000548"
     CDS             1223..1543
                     /locus_tag="U1404_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HEM5347527.1"
                     /translation="MAHHHDHEHDHNHDERELITLVDDQGNETLFEILLTIDGQEEFG
                     KNYVLLIPASAEEDENGEVEIQAYSYIENENGTEGDLQPIPEDATAEWDMIEEVFNSF
                     MEEE"
     gene            1801..2379
                     /locus_tag="U1404_000549"
     CDS             1801..2379
                     /locus_tag="U1404_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEM5347528.1"
                     /translation="MKDSFTERSKRLSEELERCLLADKNILVILDIMDRLNLSDCWLC
                     AGTIRNFIWNQYSFDEETDVDLVFFDENISYEETMEIESDLYQNYPAYRWELKNQVYM
                     HIHSPNTKPNQSSRDAIEKFPERCTAIGICRTERNKLEIFAPFGLDDIYAYQVRPTPH
                     FLVDPNRMELYRQRILKKQWKKRWLSLTVKET"
     gene            2452..2718
                     /locus_tag="U1404_000550"
     CDS             2452..2718
                     /locus_tag="U1404_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5347529.1"
                     /translation="MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDR
                     LFHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLINDRLENMKN"
     gene            3040..3348
                     /gene="rpsJ"
                     /locus_tag="U1404_000551"
     CDS             3040..3348
                     /gene="rpsJ"
                     /locus_tag="U1404_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEM5347530.1"
                     /translation="MANKKIRIRLKAYEHRTLDAAAAKIVETATRTGAQVAGPVPLPT
                     ERSLYTIIRATHKYKDSREQFEMRTHKRLIDIINPTQKTVDALMKLDLPSGVNVEIKL
                     "
     gene            3561..4187
                     /gene="rplC"
                     /locus_tag="U1404_000552"
     CDS             3561..4187
                     /gene="rplC"
                     /locus_tag="U1404_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002986659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEM5347531.1"
                     /translation="MTKGILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETD
                     GYAAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEGLEVGQEITVETFAA
                     GDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLAG
                     RMGGNRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAVKAGK"
     gene            4212..4835
                     /gene="rplD"
                     /locus_tag="U1404_000553"
     CDS             4212..4835
                     /gene="rplD"
                     /locus_tag="U1404_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEM5347532.1"
                     /translation="MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASL
                     RQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     QKVRRLALKSVYSEKVAENKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGN
                     EFAALSARNIPGVKVATATTASVLDIANADKLLVTQAAISKIEEVLA"
     gene            4835..5134
                     /locus_tag="U1404_000554"
     CDS             4835..5134
                     /locus_tag="U1404_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007518994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEM5347533.1"
                     /translation="MNLYDVIKKPVITESSMGQLEAGKYVFEVDTRAHKLLIKQAVEA
                     AFEGVKVANVNTINVKPKTKRVGRYVGRTNKVKKAIITLAADSKAIELFATADAE"
     gene            5152..5985
                     /gene="rplB"
                     /locus_tag="U1404_000555"
     CDS             5152..5985
                     /gene="rplB"
                     /locus_tag="U1404_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEM5347534.1"
                     /translation="MGIKVYKPTTNGRRNMTSLDFAEITTSTPEKSLLVALKSKAGRN
                     NNGRITVRHQGGGHKRFYRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGVKA
                     YIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGA
                     SAQVLGQEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGKAPVGRKAPSTPWGKPALGLKTRNKKAKSDKLIVRRRNQ
                     K"
     gene            6087..6368
                     /gene="rpsS"
                     /locus_tag="U1404_000556"
     CDS             6087..6368
                     /gene="rpsS"
                     /locus_tag="U1404_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEM5347535.1"
                     /translation="MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSF
                     IGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRRK"
     gene            6386..6730
                     /gene="rplV"
                     /locus_tag="U1404_000557"
     CDS             6386..6730
                     /gene="rplV"
                     /locus_tag="U1404_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEM5347536.1"
                     /translation="MAEITSAKATARTVRVSPRKSRLVLDNIRGKSVADAIAILKFTP
                     NKAAGIIEGVLNSAIANAENNFGLEKANLVVSEAFANEGPTLKRFRPRAKGSASPINK
                     RTAHITVVVAEK"
     gene            6743..7396
                     /gene="rpsC"
                     /locus_tag="U1404_000558"
     CDS             6743..7396
                     /gene="rpsC"
                     /locus_tag="U1404_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEM5347537.1"
                     /translation="MGQKVHPIGMRVGIIRDWDAKWYAEKEYADYLHEDLAIRNFIKK
                     ELADASTSTIEIERAVNKVIVSIHTAKPGMVIGKAGSNVDALRAQLNKLTGKQVHINI
                     IEIKQPDLDAHLVGESIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGAD
                     IARAEGYSEGTVPLHTLRADIDYAWEEALTTYGKLGVKVWIYRGEVLPARKNTKGGK"
     gene            7400..7813
                     /gene="rplP"
                     /locus_tag="U1404_000559"
     CDS             7400..7813
                     /gene="rplP"
                     /locus_tag="U1404_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003029477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEM5347538.1"
                     /translation="MLVPKRVKHRREFRGKMRGEAKGGKQVDFGQYGLQATTSSWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKV
                     MFEVAGVSEEIAREAFRLAGHKLPVKVKFVKREAE"
     gene            7823..8029
                     /locus_tag="U1404_000560"
     CDS             7823..8029
                     /locus_tag="U1404_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEM5347539.1"
                     /translation="MKLQEIKDFVKELRGLSQEELAKKENELKKELFELRFQAAAGQL
                     EQTARLNEVKKQIARIKTVQSETK"
     gene            8053..8313
                     /gene="rpsQ"
                     /locus_tag="U1404_000561"
     CDS             8053..8313
                     /gene="rpsQ"
                     /locus_tag="U1404_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEM5347540.1"
                     /translation="MERNNRKVLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKK
                     YKAHDENNVAKEGDIVRIMETRPLSATKRFRLVEVVEEAVII"
     gene            8338..8706
                     /gene="rplN"
                     /locus_tag="U1404_000562"
     CDS             8338..8706
                     /gene="rplN"
                     /locus_tag="U1404_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEM5347541.1"
                     /translation="MIQTETRLKVADNSGAREILTIKVLGGSGRKFANIGDIIVASVK
                     QATPGGAVKKGDVVKAVIVRTKTGARRADGSYIKFDENAAVIIREDKNPRGTRIFGPV
                     ARELRDGGFMKIVSLAPEVL"
     gene            8845..9150
                     /gene="rplX"
                     /locus_tag="U1404_000563"
     CDS             8845..9150
                     /gene="rplX"
                     /locus_tag="U1404_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEM5347542.1"
                     /translation="MFVKKGDKVRVIAGKDKGVEAVVVTALPKVNKVIVEGVNIVKKH
                     QKPNSENPQGAIVEKEAPIHVSNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD"
     gene            9174..9716
                     /gene="rplE"
                     /locus_tag="U1404_000564"
     CDS             9174..9716
                     /gene="rplE"
                     /locus_tag="U1404_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEM5347543.1"
                     /translation="MANRLKEKYLNEVVPALTEQFNYSSVMAVPKVDKIVLNMGVGDA
                     VSNAKNLEKAAQELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLD
                     KLVTVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKTRGMDIVIVTT
                     ANTDEESRALLTGLGMPFAK"
     gene            9731..9916
                     /locus_tag="U1404_000565"
     CDS             9731..9916
                     /locus_tag="U1404_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEM5347544.1"
                     /translation="MAKKSMIAKNKRPAKFSTQAYTRCEKCGRPHSVYRKFKLCRVCF
                     RDLAYLGQIPGVTKASW"
     gene            10241..10639
                     /gene="rpsH"
                     /locus_tag="U1404_000566"
     CDS             10241..10639
                     /gene="rpsH"
                     /locus_tag="U1404_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEM5347545.1"
                     /translation="MVMTDPIADFLTRIRNANQAKHEVLEVPASNIKKGIATILKNEG
                     FVKNVEFIEDDKQGIIRVFLKYGPNGEKVITNLKRVSKPGLRVYSKREDIPKVLNGLG
                     IAIISTSEGLLTDKQARQKNVGGEVIAYVW"
     gene            11104..11640
                     /gene="rplF"
                     /locus_tag="U1404_000567"
     CDS             11104..11640
                     /gene="rplF"
                     /locus_tag="U1404_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEM5347546.1"
                     /translation="MSRIGNKVITLPAGVELAQNNGVVTVKGPKGELTREFPTAIEIR
                     VEGTEVTLHRPNDSKEMKTIHGTSRANLNNMVVGVSEGFKKELEMRGVGYRAQLAGNK
                     LTLAVGKSHPDEVVAPEGITFEVPTPTQIVVSGINKEVVGQTAAYIRSLRAPEPYKGK
                     GIRYVGEFVRRKEGKTGK"
     gene            11729..12085
                     /gene="rplR"
                     /locus_tag="U1404_000568"
     CDS             11729..12085
                     /gene="rplR"
                     /locus_tag="U1404_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEM5347547.1"
                     /translation="MISKPDKNKIRQKRHRRVRGKISGTAARPRLNIFRSNTGIYAQV
                     IDDVAGVTLASASTLDKEVSKGTKTEQAVVVGKLVAERAVAKGISEVVFDRGGYLYHG
                     RVKALAESARENGLKF"
     gene            12104..12598
                     /gene="rpsE"
                     /locus_tag="U1404_000569"
     CDS             12104..12598
                     /gene="rpsE"
                     /locus_tag="U1404_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEM5347548.1"
                     /translation="MAFKDNAVEIEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGR
                     VGFGTGKAQEVPEAIRKAVESAKKNMIEVPMVGTTIPHEVRSEFGGARVLLKPASEGS
                     GVAAGGATRAVIELAGIADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISV
                     SDLA"
     gene            12613..12795
                     /gene="rpmD"
                     /locus_tag="U1404_000570"
     CDS             12613..12795
                     /gene="rpmD"
                     /locus_tag="U1404_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEM5347549.1"
                     /translation="MAQIKITLTKSPIGRKPEQRKTVVALGLGKLNSSVVKEDNPAIL
                     GMVNAISHLVTVEEVK"
     gene            12931..13371
                     /gene="rplO"
                     /locus_tag="U1404_000571"
     CDS             12931..13371
                     /gene="rplO"
                     /locus_tag="U1404_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEM5347550.1"
                     /translation="MKLHELQPATGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGG
                     GVRPGFEGGQTPLFRRLPKRGFTNINAKEYAIVNLDQLNAFEDGAEVTPVVLIEAGIV
                     KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITSKGGSVEVI"
     gene            13385..14695
                     /gene="secY"
                     /locus_tag="U1404_000572"
     CDS             13385..14695
                     /gene="secY"
                     /locus_tag="U1404_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEM5347551.1"
                     /translation="MFFKLLKDALKVKLVRSKILFTIFILFVFRVGTHITVPGVNAKS
                     LEALSNLPFLNMLSLVSGNAMRNFSVFALGVSPYITASIIVQLLQMDILPKFVEWGKQ
                     GEVGRRKLNQATRYISLVLAFVQSIGITAGFNALSGAKLTNMPLNWQTYLLIGAILTT
                     GSIIVTWLGEQISEKGYGNGTSMIIFAGIISSLPGTFHEIYIDRFVNIESSRLGESAI
                     FVAALVVLIFFVVYFTTFVQQAEYKLPIQYTKRAQGAPSSSYLPLKLNPAGVIPVIFA
                     GSITAVPTSLIQYFASQNKSAGWLLTVQEYFDYSTAKGMIVYAGLIIAFTFFYTFVQV
                     NPEKTAESLQKSAAYIHGVRPGNGTEQFLSKLLTRLAVIGALFLSFVALLPILAQNLF
                     GLSSSIAFLGTSLIIVISTSIEGIKQLEGYLLKRKYVGFLEITE"
     gene            14789..15430
                     /locus_tag="U1404_000573"
     CDS             14789..15430
                     /locus_tag="U1404_000573"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEM5347552.1"
                     /translation="MNLLIMGLPGAGKGTQAAKIVEKFNVAHISTGDMFRAAMANQTE
                     MGILAKSYIDKGDLVPDEVTNGIVKERLVQDDIKEKGFLLDGYPRTIEQAHALDENLA
                     DLGIELQGVINIEIDPSKLVERLSGRIIHKETGETFHKVFNPPVGDYKEEDFYQREDD
                     KPESVKRRLEVNIAQGQPIIDHYRAKGLVHDIEGDQDIDLVFQAIDTVLSKLQ"
     gene            15552..15770
                     /gene="infA"
                     /locus_tag="U1404_000574"
     CDS             15552..15770
                     /gene="infA"
                     /locus_tag="U1404_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEM5347553.1"
                     /translation="MAKEDVIEIEGKVVDTMPNAMFTVELENGHQVLATVSGKIRKNY
                     IRILVGDRVTVELSPYDLTRGRITYRFK"
     gene            15795..15911
                     /gene="rpmJ"
                     /locus_tag="U1404_000575"
     CDS             15795..15911
                     /gene="rpmJ"
                     /locus_tag="U1404_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013773089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEM5347554.1"
                     /translation="MKVRPSVKPICEYCKVIRRNGRVMVICPANPKHKQRQG"
     gene            15931..16296
                     /gene="rpsM"
                     /locus_tag="U1404_000576"
     CDS             15931..16296
                     /gene="rpsM"
                     /locus_tag="U1404_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEM5347555.1"
                     /translation="MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVR
                     VKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNT
                     KNNARTRKGKAVAIAGKKK"
     gene            16314..16697
                     /gene="rpsK"
                     /locus_tag="U1404_000577"
     CDS             16314..16697
                     /gene="rpsK"
                     /locus_tag="U1404_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEM5347556.1"
                     /translation="MAKPTRKRRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSS
                     AGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAG
                     LEVTAIRDVTPVPHNGARPPKRRRV"
     gene            16742..17680
                     /locus_tag="U1404_000578"
     CDS             16742..17680
                     /locus_tag="U1404_000578"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEM5347557.1"
                     /translation="MIEFEKPTITKIDENKDYGRFVIEPLERGYGTTLGNSLRRVLLA
                     SLPGAAVTSIKIDGVLHEFDTVPGVREDVMQIILNIKGIAVKSYVEDEKKIELDVVGP
                     AEVTAGDILTDSDIEIVNPDHYLFTIADGATFKAVLTVNSGRGYVPAEDNKKDDAPVG
                     TLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTLEINTNGTIVPEDALGLSARILMEH
                     LGLFTDLTEVAKSAEVMKEAEVASDDRMLDRTIEELDLSVRSYNCLKRAGINTVFDLT
                     EKTEPEMMKVRNLGRKSLEEVKVKLADLGLGLKKDK"
     gene            17695..18081
                     /gene="rplQ"
                     /locus_tag="U1404_000579"
     CDS             17695..18081
                     /gene="rplQ"
                     /locus_tag="U1404_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEM5347558.1"
                     /translation="MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTV
                     EKMITLGKRGDLHARRQAAAFVRNEIASENYDEATDKYTSTTALQKLFSEIAPRYAER
                     NGGYTRILKTEPRRGDAAPMAIIELV"
     gene            18392..19247
                     /locus_tag="U1404_000580"
                     /pseudo
     CDS             18392..19247
                     /locus_tag="U1404_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            19454..19924
                     /locus_tag="U1404_000581"
     CDS             19454..19924
                     /locus_tag="U1404_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5347559.1"
                     /translation="MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLE
                     AQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKRKFDRMPHEDIHELSHAIQSPGL
                     INDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR"
BASE COUNT         6567 a         3777 c         4331 g         5570 t
ORIGIN      
        1 aataaaatgt agcaaaggag tgactacatg attaaaattt atactgtatc tagttgtact
       61 tcttgtaaga aagcgaaaaa ttggttaaat gctcaccaat tatcttataa tgagcataat
      121 cttgcgaagg aagccattac taaggaagaa atcctaaaca tcttaacaaa aacagagaat
      181 ggtattgcaa gtatcgtatc gtcaaaaaac cgttatgcaa agagtctgga ctttgatatt
      241 gaagagttga gtgtgaacga ggtcattgat ttaattacct ctaacccacg tattttgaag
      301 agtccaatct tgattgatga gaaacgactt caagtgggct ataaagaaga tgatatacgc
      361 gctttcttgc cacgtgcagt gcgcaatgtt gaaaatgctc aagctcgtat gagagcagct
      421 ctataagatg tacaaaagga ctcttttggg gttctttttg cgcatttttt gagaataatt
      481 aaaatttgtg atataatgta aaaaataggg aaagaaggtg taagtatggg atttaccgaa
      541 gaaaccgttc gttttcgcct agatgataca gataaacaag aaatcagcaa gacattgact
      601 agtgtttatc gttcgctaga ggaaaagggc tataatccga ttaaccaaat cattggctat
      661 gtattaagtg gggaccctgc ttatattcct cgctataatg atgcccgcaa tcagattcgt
      721 aagcatgaac gagatgaaat cattgaagaa ttggtgcgct actatttgaa agggaatggg
      781 attgacctct aatgagaata atgggattag acgtcggttc caagacagtt ggtgtagcca
      841 tttcagatcc gttaggtttc acggcccaag ggttggaaat catcccaatc gatgaagaaa
      901 agggcgaatt cggtctggag cgtttgaccg aacttgtaga acagtacaag gttgataaat
      961 ttgttgtagg cttgccgaag aatatgaata atactagtgg tccacgtgtg gaagctagtc
     1021 aagcttacgg tgatttattg actgagcgtt acaaacttcc agttgattat caggatgaac
     1081 gtttaacaac tgttgcagca gaacggatgc tgattgagca agcggatatc agccgaggaa
     1141 aacgcaagaa agttatcgat aaattagcag ctcagctgat tttacaaaat tatttagata
     1201 gaacatttta aaggagattc taatggcaca tcatcatgac catgaacacg accacaacca
     1261 cgacgaacgt gaattgatta ctttggtaga cgaccaaggt aacgaaacac tttttgaaat
     1321 cttattgacg attgacggtc aagaagagtt tggtaagaac tatgttctct tgattcctgc
     1381 aagtgcagaa gaagatgaga acggagaagt tgaaatccaa gcctactcat acattgagaa
     1441 tgagaatggc acagaaggcg atttgcaacc tatcccagaa gacgcaacag cagaatggga
     1501 tatgattgaa gaagtcttca acagctttat ggaagaggaa taaaaaggtc cagtggacct
     1561 ttttatcatg agcctgaaaa caagaaagcg aattaaggtc cggtggacct ttttatcatg
     1621 agcctgaaaa caagaaagtg aattaaggtc cagtggacct ttttgtcatg agcctgaaaa
     1681 caagaaagcg aattaaggtc cggtggagtg aagcagtctg ggggagactg tttcagcccg
     1741 agttaagaaa cagcaaggcg aggaatggat tatgagccag aaaatcaaaa gggaggccag
     1801 atgaaagata gttttacaga aagaagtaag aggctgagtg aggaattaga gaggtgtcta
     1861 ctggctgata aaaatatttt ggtcatatta gacataatgg atagactgaa tttatcagat
     1921 tgctggctct gtgcgggaac tatccgtaat ttcatttgga atcaatacag ttttgatgaa
     1981 gaaacagatg ttgatcttgt gttttttgat gaaaatattt cttatgaaga gacaatggaa
     2041 atagaaagcg atttatatca aaactatcca gcctatcgat gggaattaaa aaatcaagtg
     2101 tatatgcata tccatagtcc gaatactaaa ccgaatcaat catcaaggga tgcgattgaa
     2161 aaatttccag aaagatgcac agcgataggt atttgtcgaa cagaaagaaa taaattagaa
     2221 atatttgctc cttttggatt ggatgacatt tatgcttacc aagtacggcc aacaccacat
     2281 ttcttagtgg atcctaatcg catggaattg tatcgacaaa gaattcttaa gaaacagtgg
     2341 aaaaagaggt ggctatcgct aacagtaaaa gagacttaac tcccaccaag taagtaggcc
     2401 aaaaacagta ttttttataa actaaaacaa tcaactacgg gagattatgt tatggaattt
     2461 gaaacggttt gtttgaaggt tagaaactta ggtaggctat attgctactt caaagttaaa
     2521 tttagaaacc atatcgaggc tataattcgt aaacaggaaa gtcaaaaatg taaatttgat
     2581 cgtctcttcc atgaagatat tcatagtttg attcaatcac cgagcttggg taatgatgag
     2641 ttgctgatgt tatggggtct cctgagagat tatcgaaaaa atttaatcaa tgaccgactt
     2701 gaaaatatga aaaattgata agcggacaga gttttactgg cagtcaaaaa aataattcga
     2761 gacttacaag gatacttgaa aaaaacgttg atagttaact caaataaaaa ataagtaatg
     2821 aagaatcctg aaataaaagt tttgggattt tttgaatttt tgagtaaaaa ctcttgcaat
     2881 ggcaagtgga atctggtaga atgttctagt gccgtaaaaa atacggctgt agctttgatg
     2941 caagaggttg cgacacgctc ggttgcattg ccacgcaaca cgtgttggtt ttcttgtgga
     3001 gctagcctat tatgttaaat agacgaaaag gagaaaaaga tggcaaacaa aaaaattcgc
     3061 atccgcttga aagcgtacga acaccgtaca cttgatgcag cagctgcaaa aatcgttgaa
     3121 actgcaacac gtacaggtgc tcaagtagca ggtccagttc cgcttccaac agaacgtagc
     3181 ctctacacaa tcatccgtgc gactcacaag tataaagact ctcgtgagca gttcgaaatg
     3241 cgtacacaca aacgtttgat cgacatcatt aacccaactc aaaaaacagt tgatgctttg
     3301 atgaaattgg atcttccaag tggtgtaaac gtagaaatca aattgtaatc aagtagcaag
     3361 gtaaactaaa agcaagtgtt cataattgaa cacgggctaa actccgtgtg aaaaagataa
     3421 actttcctag aaacagaagt ttcttcgtca agtttcctat tttcactttg agtttgacgc
     3481 cctttgtatc ttggtttgag catgaaaaac gctcgttaaa aactttttaa ctataaaata
     3541 agaaaaggaa tatttttctc atgacaaaag gaatcttagg gaaaaaagtg ggaatgactc
     3601 aaatcttcac tgaatctggt gaatttatcc ctgttactgt catcgaagca actccaaacg
     3661 ttgttcttca agtgaaaaca gttgaaactg acggttatgc agcagttcaa gttggttttg
     3721 atgacaaacg tgaagtattg agcaacaaac ctgccaaagg ccatgtagct aaagctaaca
     3781 cagctcctaa gcgcttcatt cgtgaattca aaaacattga aggcttggaa gttggacaag
     3841 aaattacagt tgaaactttc gcagctggtg atgttgttga tgtaactggt acatctaaag
     3901 gtaaaggttt ccaaggcgtt atcaaacgcc atggtcaatc acgtggtcct atggctcacg
     3961 gttctcgtta ccaccgtcgt ccaggttcta tgggtcctgt tgcacctaac cgtgtattca
     4021 aaggtaaaaa ccttgcaggt cgcatgggcg gcaaccgtgt aacaattcaa aaccttgaag
     4081 ttgtacaagt tgttccagaa aagaacgtta tccttatcaa aggtaacgta ccaggtgcta
     4141 agaaatctct tatcactatc aagtcagcag ttaaagctgg taaataataa ggaaagggga
     4201 aatcagtcga aatggcaaac gtaacattat ttgaccaaac tggtaaacaa gctggtgaag
     4261 tagttcttaa cgatgcgatc tttggtatcg agccaaacca agcagttgta tttgatgtga
     4321 tcatcagcca acgtgctagc cttcgtcaag gtactcacgc agttaaaaac cgttcagcag
     4381 tctcaggtgg cggacgcaaa ccatggcgtc aaaaaggaac tggacgtgct cgtcaaggtt
     4441 ctatccgttc accacaatgg cgtggcggtg gcgtagtctt cggaccaact ccacgttcat
     4501 acgcgtacaa acttccacaa aaagttcgtc gcttggcact taaatctgtt tactcagaaa
     4561 aagttgctga aaacaaattt gtagctgtta actcgcttga attcacagct ccaaaaactg
     4621 ctgaatttgc aaaagtactt gcagcattga gcattgattc taaagtcctt gttattcttg
     4681 aagaaggcaa cgaattcgca gctctttctg ctcgtaacat cccaggagtt aaagttgcaa
     4741 ctgcaacaac tgcaagcgta cttgacatcg caaatgcaga caaacttctt gtaactcaag
     4801 cagctatctc taaaattgag gaggttcttg cataatgaat ttgtatgatg ttatcaaaaa
     4861 acctgtcatc acagaaagct caatgggcca actcgaagca ggcaagtatg tatttgaagt
     4921 tgacactcgt gcgcacaaac tcttgatcaa gcaagctgtt gaagctgcat tcgagggtgt
     4981 taaagttgca aatgttaaca caatcaacgt gaaacctaaa acaaaacgcg taggtcgtta
     5041 tgtaggtcgc acaaacaaag tgaaaaaagc aatcatcaca ttggctgctg attcaaaagc
     5101 gatcgaattg ttcgctacag ctgacgctga ataatcaaag gaggaattaa cgtgggtatt
     5161 aaagtttata aaccaacgac aaatggccgt cgtaacatga cttctttgga cttcgctgaa
     5221 atcacaacaa gcactccaga aaaaagcttg cttgttgctt tgaagagcaa agctggtcgt
     5281 aacaataacg gtcgcatcac tgttcgtcac caaggtggcg gtcacaaacg tttctaccgt
     5341 ttggtagact tcaaacgtaa caaagatggc gttgaagcaa tcgttaaaac tatcgaatac
     5401 gatccaaacc gttcagcaaa catcgctctt gtacactaca cagacggtgt taaagcttac
     5461 atcattgctc ctaaaggtct tgaagttggt caacgcatcg tttcaggtcc agaagcagat
     5521 atcaaagttg gtaacgcact tccacttgca aacatcccag tcggtactgt tgttcacaac
     5581 atcgagttga aaccaggtcg cggtggtgag ttggttcgtg ctgctggtgc atctgcacag
     5641 gttcttggtc aagaaggtaa atacgttctt gttcgccttc aatcaggtga agttcgtatg
     5701 atccttggta cttgccgtgc tactgttggt actgtaggta acgaacaaca tggccttgtt
     5761 aaccttggta aagcaggtcg tagccgttgg aaaggtatcc gtccaacagt tcgcggttct
     5821 gtaatgaacc ctaacgatca cccacacggt ggtggtgaag gtaaagcacc agttggtcgt
     5881 aaagcaccat ctacaccatg gggtaaacca gctcttggtt tgaaaactcg taacaagaaa
     5941 gctaaatctg acaaacttat cgttcgtcgt cgcaaccaaa aataatctat tcttggttgc
     6001 ttagcattct atatcatccg ccaactcggt agcccgcaaa gcgggcaagc cgctgtggta
     6061 catattttaa aggagaaaac actaaaatgg gacgtagtct taaaaaagga cctttcgtcg
     6121 atgagcattt gatgaaaaaa gttgaagctc aagcaaacga cgaaaagaaa aaagtaatta
     6181 aaacttggtc acgtcgttca acgattttcc caagtttcat cggttataca atcgcagttt
     6241 acgatggacg taaacacgta cctgtataca ttcaagaaga catggtaggt cacaaacttg
     6301 gtgaatttgc accaactcgt acttacaaag gtcatgctgc tgacgacaag aaaactcgtc
     6361 gtaaataatt taggaggaaa acacaatggc agaaattact tcagctaaag caactgctcg
     6421 cacagtacgt gtttcacctc gtaaatcacg tcttgtcttg gataacatcc gtggcaaaag
     6481 cgtagcagac gcaatcgcaa tcttgaaatt cacaccaaac aaagctgcag gcattatcga
     6541 gggagtttta aactcagcaa tcgctaacgc tgaaaacaac tttggtttgg aaaaagctaa
     6601 cttggtagtc agcgaagcat tcgcaaacga aggaccaacg ttgaaacgtt tccgtccacg
     6661 tgcgaaaggt tcagcttcac caattaacaa acgcacagct cacatcactg tagttgtggc
     6721 agagaaataa ggaggtaaaa acgtgggtca aaaagtacat ccaattggta tgcgtgttgg
     6781 catcatccgt gattgggatg ctaaatggta tgctgaaaaa gaatacgcgg attaccttca
     6841 tgaagatctt gcaatccgca actttatcaa aaaagaattg gctgatgcgt caacatcaac
     6901 aatcgaaatc gaacgtgctg taaataaagt aatcgtttct atccacactg ctaagccagg
     6961 tatggttatc ggtaaagctg gtagcaacgt tgatgcactt cgtgctcaat tgaacaaatt
     7021 gactggtaag caagtacaca tcaacatcat cgaaatcaaa caacctgatt tggatgcaca
     7081 ccttgttggt gagtcaatcg ctcgtcaatt ggagcaacgt gtggcattcc gccgtgctca
     7141 aaaacaggct atccaacgtg caatgcgcgc tggtgcaaaa ggtatcaaaa cacaagtttc
     7201 tggtcgtttg aacggtgctg atattgcccg tgcagaaggc tactcagaag gaactgttcc
     7261 tcttcataca cttcgtgcgg atatcgacta cgcttgggaa gaagctttga caacttacgg
     7321 taaacttggt gttaaagtat ggatctaccg tggtgaagtt cttccagctc gtaaaaacac
     7381 taaaggaggt aaataacaaa tgttagtacc taaacgtgta aaacaccgtc gtgaattccg
     7441 tggaaaaatg cgcggtgaag ctaaaggtgg aaaacaagta gactttggtc aatacggtct
     7501 tcaagcaact actagctcat ggattacaaa ccgccaaatc gaagctgccc gtatcgctat
     7561 gacgcgttac atgaaacgtg gtggtaaagt ttggatcaag atcttcccac acaaatcata
     7621 cactgctaaa gctatcggtg tacgtatggg ttctggtaaa ggtgctcctg aaggttgggt
     7681 agctccagtt aaacgcggta aggttatgtt tgaagtagct ggcgtttctg aagaaatcgc
     7741 tcgcgaagca ttccgccttg ctggtcacaa attgccagtt aaagttaaat tcgtaaaacg
     7801 tgaagcagaa taaggagaag acatgaaact tcaagaaatt aaagattttg taaaagaact
     7861 tcgtggcctt tctcaagaag aacttgctaa gaaagaaaac gaattgaaga aagaactctt
     7921 cgaacttcgt ttccaagctg ctgctggtca acttgagcaa actgctcgtt tgaacgaagt
     7981 gaagaaacaa attgcacgta tcaaaactgt gcaatctgaa actaaataat agattgggaa
     8041 aggagaattt caatggaacg caataatcgt aaagttcttg ttggacgcgt agtatctgac
     8101 aaaatggaca aaacaatcac agttgtagtt gaaactaaac gtaaccaccc agtctatggt
     8161 aaacgtatta actactctaa aaagtacaaa gctcatgatg aaaacaatgt tgctaaagaa
     8221 ggcgatatcg ttcgtatcat ggaaactcgc ccactttcag ctacaaaacg tttccgtctt
     8281 gtagaagttg tggaagaggc agttatcatt taatcaacct gaaaggagaa aattgacatg
     8341 attcaaacag aaactcgttt gaaagttgct gacaacagtg gcgcacgtga aatcttgaca
     8401 atcaaagttc ttggtggttc aggacgtaaa ttcgcgaaca tcggcgacat catcgttgct
     8461 tcagtaaaac aagctactcc tggtggtgcg gttaaaaaag gtgacgttgt taaagccgtt
     8521 atcgttcgta ctaagacagg tgctcgtcgt gctgatggtt catacatcaa attcgatgag
     8581 aatgctgcag ttatcatccg tgaagacaaa aaccctcgcg gaactcgtat ctttggccca
     8641 gtggcacgcg aattgcgtga tggcggtttc atgaaaatcg tttcattggc accagaagta
     8701 ctttaatcaa atagttttag gaaatttgtt acaaactaac gaagtctgtg acgggtttag
     8761 taaactagaa aacaaactaa gtcccctggt taaatcacta accagggtgc ccattagggc
     8821 gtaagaaatt ataggagaaa tcaaatgttt gtaaaaaaag gcgataaagt tcgcgtaatc
     8881 gctggtaaag acaaaggcgt tgaagcagtt gtcgtaacag cacttccaaa agtaaacaaa
     8941 gttattgttg aaggtgttaa catcgttaag aaacaccaaa aaccaaacag cgaaaaccct
     9001 caaggcgcta tcgttgaaaa agaagctcca atccatgtgt caaacgttca agttcttgac
     9061 aaaaatggtg ttgcaggacg cgttggttac aagtttgtag acggcaaaaa agttcgctac
     9121 aacaaaaaat caggcgaagt acttgattaa tcacgaagga aaggagaagt ataatggcaa
     9181 atcgtttaaa agaaaaatat cttaatgaag tagttcctgc tttgactgaa caatttaact
     9241 attcttcagt tatggctgtg ccaaaagttg ataagatcgt tttgaacatg ggtgttggtg
     9301 acgctgtttc taacgctaaa aaccttgaga aagctgctca agaattggct ttgatctcag
     9361 gtcaaaaacc acttatcact aaagctaaga aatcaatcgc cggcttccgt cttcgtgagg
     9421 gtgttgcgat cggtgcgaaa gtaactcttc gtggcgaacg tatgtatgaa ttcttggaca
     9481 aattggttac agtttcactt ccacgtgtac gtgacttcca cggtgtacca actaagtcat
     9541 ttgacggacg tggtaactac acacttggtg tgaaagagca attgatcttc ccagaaatca
     9601 acttcgacga tgttgataaa actcgcggta tggatatcgt tatcgttaca actgctaaca
     9661 ctgacgaaga atcacgtgca ttgcttactg gccttggtat gccgtttgca aaataagagg
     9721 gagagaataa atggctaaaa aatcaatgat cgctaagaac aaacgcccag ctaagttctc
     9781 tacacaagct tacacacgct gtgaaaaatg tggacgtcca cactcagttt accgcaaatt
     9841 caaattgtgc cgtgtatgct tccgcgactt ggcttacctt ggacaaattc caggcgtaac
     9901 aaaagcttct tggtaagata agatgtgaga gcgtttagca accaacgcaa agataggaga
     9961 ttttacaacg aagtttactt ctaggatttg ctaagcttgt agctcgaact caattaaaac
    10021 atgatactaa gggcgtgacg gacaaagtga aaataggaac tctagcgaag aacgcttgcg
    10081 ttctagatag agttatcttt ttcacacagg ccgtagcccg agttcaaatg ttaggatgca
    10141 atagcatcat actagcaaat tcaaactttg cattgcctat caggcacaca ttaactagca
    10201 agtgatctaa tcaaactgct agtaagagga gaaacaacaa atggttatga ctgacccaat
    10261 tgcagatttt ttgacacgta ttcgtaacgc taaccaagca aaacacgaag tgcttgaagt
    10321 acctgcatca aacatcaaaa aaggtattgc tacaatcctt aaaaacgaag gttttgtaaa
    10381 aaacgttgaa ttcatcgaag atgacaaaca aggcatcatc cgtgtattct tgaaatacgg
    10441 accaaacggt gaaaaagtta tcacaaactt gaaacgcgtt tcaaaaccag gtcttcgtgt
    10501 ttactcaaaa cgtgaagata ttcctaaagt tcttaacgga cttggtatcg caatcatctc
    10561 aacatcagaa ggtcttttga ctgacaaaca agctcgtcaa aagaacgttg gtggtgaggt
    10621 tatcgcatac gtttggtaat cttttagctt ctaatttcgt catgtgcctg tgttagagcg
    10681 tcttgacata ctcaagtatg gtctgcgtcg ctctgccttg tcacatttag aaattgaaac
    10741 ctaaaagcat gatacaaatg cgagaggacc agttcttcgt gcgtgttcaa atctgactta
    10801 ctgattattt ggtatcatgc aaccaaacta gaacaagatt cactaattga acacgcctac
    10861 aactctttga aaaaagtgaa aagtgtttca gaaatgctca ccttgttcgt cgtaaacgtc
    10921 tgaactttct ctggccttcg gtcaggaaag tcctagtcgt tctgacgagg gtgcgtctgc
    10981 gaaatcaaag acttcggact taccgcttat ttttcttcga gttgcttaac ggctttgtat
    11041 cttgttcacc ccgtgaaaac tagtcgctcg acggcttgat aatttaacag gagaattaaa
    11101 aatatgtcac gtattggtaa taaagtaatt acattgcctg ctggcgttga gcttgctcaa
    11161 aacaacggcg tggtaactgt aaaaggacct aaaggggaat tgactcgtga attcccaact
    11221 gctattgaaa tccgtgtgga aggtacagaa gttactcttc accgtccaaa cgattcaaaa
    11281 gaaatgaaga ctattcacgg tactagccgt gctaacctca acaacatggt tgttggtgtt
    11341 tctgaaggct tcaaaaaaga acttgaaatg cgtggtgtcg gttaccgtgc tcaattggct
    11401 ggtaacaaat tgacacttgc tgttggtaaa tcacatccag atgaagtggt tgcaccagaa
    11461 ggtattacat ttgaagttcc aacaccaaca caaatcgtcg tgtctggtat caacaaagaa
    11521 gttgttggtc aaacagcagc ttacatccgt agccttcgcg ctcctgagcc atacaaaggt
    11581 aaaggtatcc gctacgttgg tgaattcgtt cgccgtaaag aaggtaaaac aggtaaataa
    11641 tagcttgctg aggtggctta gccacctggc tgactatttc tcaaattgtt tcgcaagaaa
    11701 cagaatcata cattaagagg tgaatattgt gatttcaaaa ccagataaaa acaaaatccg
    11761 ccaaaaacgc caccgtcgcg ttcgcggtaa aatctctgga actgctgctc gcccacgttt
    11821 gaacattttc cgttctaata caggcatcta cgctcaagtg attgatgacg tagcgggtgt
    11881 aacgctcgca agcgcttcta ctcttgataa agaagtttca aaaggtacta agacagaaca
    11941 agctgttgtt gtaggtaaac tcgttgctga acgcgcggta gctaaaggta tttctgaagt
    12001 ggtctttgac cgcggtggat atctctatca cggacgtgtg aaagctttgg ctgaatcagc
    12061 tcgtgaaaac ggattgaaat tctaataggg aggacactaa gaaatggcat tcaaagataa
    12121 cgcagttgaa attgaagaac gcgtagtagc catcaaccgt gttacaaaag ttgttaaagg
    12181 tggacgtcgt cttcgttttg cagctcttgt ggttgttggt gaccgtaacg gtcgcgtagg
    12241 tttcggtact ggtaaagctc aagaagtacc agaagctatc cgtaaagcag ttgaatctgc
    12301 taagaaaaac atgattgaag taccaatggt tggtacaaca atccctcacg aagttcgctc
    12361 agaatttggc ggcgctcgtg tattgttgaa acctgcttca gaaggttctg gggttgctgc
    12421 cggtggtgca actcgtgccg taatcgaatt ggcaggtatc gcagatgtga cttctaagtc
    12481 acttggttca aacacaccaa tcaacatcgt tcgcgcaaca gttgaaggtt tgaaacaatt
    12541 gaaacgtgct gaagaagtgg ctgcacttcg tggcatctca gtttctgatt tagcataaga
    12601 aaggagatac tcatggctca aattaaaatc actttgacta agtctccaat cggtcgcaaa
    12661 ccagaacaac gtaaaacagt tgttgcactt ggacttggta aattgaactc ttcagttgtt
    12721 aaagaagata acccagctat tcttggaatg gtgaacgcta tctctcactt ggtaactgta
    12781 gaagaagtta aataatctaa caaatagact aagtcgcata gagaaatctt tgcgacttct
    12841 agtccatttt acatatttac atacagcgag tttgtggagg aagactcttg tacttcacag
    12901 gcgctagcat ataaaagagg agaaataata atgaaacttc atgaattaca acctgctaca
    12961 ggttctcgta aagtccgcaa ccgtgtaggt cgtggtacat catcaggtaa cggtaaaaca
    13021 tctggccgtg gtcaaaaagg tcaaaaagct cgtagcggtg gcggtgttcg cccaggtttt
    13081 gaaggtggac aaactccatt gttccgtcgt cttccaaaac gtggatttac aaatatcaac
    13141 gctaaagagt acgcaatcgt taaccttgat caattgaacg cttttgaaga tggtgcagaa
    13201 gtaacaccag ttgtgcttat cgaagctgga atcgttaaag ctgaaaaatc aggaattaaa
    13261 attcttggta acggtgaatt gacgaagaaa ttgacagtta aagctgctaa attctctaaa
    13321 tcagctgaag aagcaatcac ttctaaaggt ggctcagtag aagtcatcta agaggtggca
    13381 gcctatgttt tttaaacttt taaaagatgc cttaaaggta aaattggtac gtagtaaaat
    13441 tctatttact atctttatcc tttttgtctt ccgcgtagga acccacatta cagtaccagg
    13501 agtaaacgca aagagtcttg aggccttgtc aaaccttccg ttcttgaaca tgttgagttt
    13561 ggtttcagga aatgctatgc gtaatttctc agttttcgca ctaggtgtta gtccttatat
    13621 tacagcttcc atcattgttc aacttttaca aatggatatt ttacctaaat ttgttgaatg
    13681 gggtaagcaa ggtgaagttg gtcgtcgtaa actaaatcaa gcaacacgct acatttcttt
    13741 ggtactggca tttgttcaat caattggtat tacagcaggc tttaatgctt tgtccggtgc
    13801 aaaattgacc aatatgccat taaattggca aacatatttg ttgattggag caattttgac
    13861 aacaggttcg attattgtaa cctggctggg ggaacagatt tctgaaaagg gctatggtaa
    13921 tggtacatca atgatcatct ttgcagggat tatttcatcg ttaccaggaa cttttcacga
    13981 gatttacatt gatcgctttg ttaatattga atcaagtcgt ttgggggaat cagcaatctt
    14041 tgttgctgca ctcgtcgtat taatattctt tgttgtgtat tttacaactt ttgtacaaca
    14101 agcagaatat aaattaccaa ttcaatatac aaaacgtgca caaggagcac cttctagctc
    14161 atatttaccg ctgaaattga atccagcagg agttattccc gtaatctttg caggctcaat
    14221 cactgcagtt ccaacttctt tgattcaata tttcgcaagt caaaataaga gtgccgggtg
    14281 gttattgacg gttcaggaat actttgatta ttcaactgct aaaggtatga ttgtatatgc
    14341 aggtttaatt attgccttta cattcttcta cacctttgtt caagtaaatc ctgagaagac
    14401 tgcagaaagc cttcagaaaa gtgcagccta tatccatgga gttcgtcctg gtaatggcac
    14461 tgaacagttt ttgtcaaaat tattgacaag attggcagta atcggtgcac tcttcttgag
    14521 ttttgtagct ttgctgccta tccttgcgca aaatctcttt gggctttctt caagcattgc
    14581 gttccttggt acaagtttga ttatcgtaat ctctacaagt atcgaaggca tcaagcaatt
    14641 agaaggctac cttcttaaga gaaaatatgt aggtttctta gaaattacag aatagaatat
    14701 aggttgacct agtcaacctt ctattttgtt tttagataag tttgtcaata atggcaaatt
    14761 tatgtgaaaa caaaataagg agtttgtcat gaatctttta attatgggtt taccaggtgc
    14821 tggtaaaggg acacaagcgg ccaagattgt tgagaaattc aatgttgctc atatttcaac
    14881 aggagatatg ttccgtgcag caatggccaa tcagactgaa atgggtattc ttgccaagtc
    14941 gtacattgat aagggtgacc tcgttcccga tgaagttact aatggcattg tcaaagaacg
    15001 tttggttcag gatgacatca aggaaaaagg ctttttgctt gatggctatc ctcgtacgat
    15061 tgaacaagcc catgccttgg atgaaaattt ggctgactta ggaattgagt tgcaaggtgt
    15121 tatcaatatt gagattgatc cttcaaaatt ggtagagcgt ctcagcggtc gtattattca
    15181 taaagaaact ggagagactt tccacaaagt atttaatcca cctgttggag actacaaaga
    15241 ggaagacttc tatcaacgtg aagatgacaa gccagaatct gtcaaacgtc gtttagaggt
    15301 caatatcgca caaggacagc caatcattga tcattatcgt gcaaaagggc tggtccatga
    15361 tattgaaggt gaccaagaca ttgaccttgt tttccaagca attgatacag tactatcaaa
    15421 attgcaataa actaatagat ttggcttgca ttttttatac aaagatgata aaatagccta
    15481 gtctgactta taattgttac ctctgtgttc agaggacatc aaatcgatat ttagagaggg
    15541 gttacttttg catggcaaaa gaagatgtga ttgaaattga aggcaaagta gtcgatacaa
    15601 tgccaaatgc tatgtttact gttgagttgg agaatggaca ccaagtcctt gcaactgttt
    15661 caggtaaaat ccgtaaaaac tacattcgta ttttggtcgg tgaccgcgta actgttgagc
    15721 ttagtccata cgacttgaca cgtggacgta tcacataccg ctttaaatag tcgaaatact
    15781 tggagggatt aaacatgaaa gtaagaccat cggtcaaacc aatttgcgaa tactgcaaag
    15841 ttattcgtcg taatggtcgt gttatggtga tttgcccagc aaaccctaaa cacaagcaac
    15901 gtcaaggtta agaaatagaa aggagaaaac atggctcgta ttgctggagt tgacattcca
    15961 aatgacaaac gtgtagttat ttcattaact tatgtttatg gtatcggtct tgcaacatct
    16021 aaaaaaattc ttgcagctgc aggtatttca gaagatgtac gcgtgaaaga tttgacatca
    16081 gatcaagaag atgctattcg tcgtgaagtt gatgcaatca aagttgaagg tgacctccgt
    16141 cgtgaagtta acttgaacat caaacgtttg atggaaatcg gttcataccg tggtatccgt
    16201 caccgtcgcg gacttcctgt ccgtggacaa aacactaaaa acaatgcccg cactcgtaaa
    16261 ggtaaagctg ttgcgattgc aggtaagaaa aaataatata ggaggtagaa aaattggcta
    16321 aaccaacacg taaacgtcgt gtgaaaaaga atatcgaatc tggtattgct catattcacg
    16381 ctacatttaa taacactatt gttatgatta ctgatgtgca tggtaacgct attgcttggt
    16441 catcagctgg tgctcttggt ttcaaaggtt ctcgtaaatc tacaccattc gcggctcaaa
    16501 tggcttcaga agctgctgct aaatctgcac aagaacacgg tcttaaaaca gttgaagtta
    16561 ccgttaaagg cccaggttca ggtcgtgagt ctgctatccg cgctcttgct gccgctggtc
    16621 ttgaagtaac agcaattcgt gatgtgactc ctgtaccaca caatggtgct cgtcctccaa
    16681 aacgtcgccg tgtataatca tacattccat acacagcttt tcgtttaaga gggagtaaga
    16741 aatgattgag tttgaaaaac caacaataac aaaaattgat gaaaataaag attacggcag
    16801 atttgtaatc gaaccattag aacgtggtta cggtacaact cttggtaact ctcttcgtcg
    16861 tgtacttctt gcctcacttc caggtgctgc agtgacatcg attaaaattg atggtgtact
    16921 ccacgaattc gacacagttc caggtgttcg tgaagatgtt atgcaaatta ttcttaacat
    16981 caaaggcatt gctgtaaaat cttatgtcga agacgaaaag aaaattgaac ttgatgtagt
    17041 aggtccagct gaagtaacag caggagacat tcttacagat agtgacattg aaattgtaaa
    17101 ccctgaccat tatctcttta ccattgctga tggtgccact tttaaagctg ttttgactgt
    17161 caattcaggt cgtggttatg taccagctga ggataataag aaagatgatg caccagtggg
    17221 aacacttgct gtagattcta tctatacgcc agtgaagaaa gtcaattatc aagttgaacc
    17281 agctcgtgtt ggtagcaacg atggttttga caaattaaca cttgaaatca acacaaatgg
    17341 caccattgtt ccagaagatg ctttaggtct ttctgcacgt attttgatgg agcacttagg
    17401 tctcttcact gacttgactg aagttgcaaa atctgcagaa gtgatgaaag aagctgaagt
    17461 ggcttcagat gatcgtatgc ttgatcgtac gattgaagaa ttggatctat ctgttcgctc
    17521 atataactgt ctgaaacgtg caggcattaa cactgtattc gacttgacag agaaaactga
    17581 gccagaaatg atgaaagtgc gcaatcttgg tcgcaagagt cttgaagaag ttaaagttaa
    17641 attggctgat cttggtctag gattgaaaaa agataaataa tataggagga aatcatggca
    17701 taccgtaaac taggacgcac tagctcacaa cgtaaagcaa tgttgcgcga tttgacaact
    17761 gaccttttga tcaacgaatc aatcgttaca actgaagctc gtgctaaaga aatccgtaaa
    17821 acagttgaaa aaatgatcac acttggtaaa cgtggtgatt tgcacgcacg tcgtcaagca
    17881 gcagcatttg ttcgtaacga aattgcatct gaaaactatg atgaagcaac tgataagtac
    17941 acttctacta cagcacttca aaaattgttc tctgaaattg cacctcgtta tgcagaacgt
    18001 aatggtggat atactcgtat cctcaaaact gaaccacgtc gtggtgatgc tgcaccaatg
    18061 gcaattatcg aacttgtata agatcatcaa ttttgttgag tgttatgatg atggaatcct
    18121 attctgattc ttagtctagc tctggtctac cgctgagctt atctcagcgg taacactcat
    18181 catgttgatt ggacgcttgt ttacgaaatt actctaagat agaataattt cgtaagcagg
    18241 cgttttttaa tagatgatac atatcagaaa cagagcattt acaagaagaa cgaatcaata
    18301 gttactcgtg gtgctagttc atttcaaaat acaataaaaa gcccaaatgg actatactgt
    18361 aagtgacgaa acatacagga ggttagtcca aatgagccac ttacagtata ccgctaaatc
    18421 tcatcatttg caatggaatg tacgccaatt atcacaaatt tgtcatcact tctacaacaa
    18481 ctattgcccg gattccttca aatatcggcg aaatgttggc ttagttaaag tttcagatga
    18541 atcaatcctt gtcttacttt tgttacaagc tgaactaggt atgacatcac agcgccattt
    18601 ctacaccatc tgccacctct tcccttgcgg tcagttacta gaaagaagct gtttcaatcg
    18661 tcggtcaaaa caattgattt ggctcgtcca atcaatccga aaagctatga gtgaaatgct
    18721 tccatctggt aaactagcca ttatagatag ttttcctttg ccaacctgtt cgcaatcaca
    18781 gagcaaccat ttttaaagga ttagccgata ttggctacaa cgcctctaaa catctttggt
    18841 tctacggctt caaagttcat atgctagtga ctttatctgg ttatattttg aactatgttg
    18901 tcacgccagc ctctgtccat gatatcaagg tggtttatga gctattagag gggtgtaagc
    18961 aatcggttat cttaggtgat ctaggctacc taagcagtga gctcaaaaag gacttagagc
    19021 aagaaggtta ccatctatgg acgccgtttc gtaaaaacat gactgggtcc gaagaacata
    19081 acaattggaa agtaatggcc atgagacgaa ctgttgaaac acgtttttct gaactgtgtc
    19141 gtctctttga catcgaacat acattagcta gaagcctagc tggactacag ttacgaattg
    19201 aacaaattat tctagctcat aacttacgct attttgaaat gaactagcac cacgggtaat
    19261 agttatttat cacaatctta gaactatacc aaatcactcc cttctgaagc agaatgcaat
    19321 gtttgccata gagtatcaat agcaaatata cttaaaaaaa gaaaaatcaa ataaagtatg
    19381 ctagacaaaa atgtcctgta gaaagacagc acttttcgat aaacttaaac catcaacaaa
    19441 aggagattaa gtaatggaat tcgaaaaagt gtacgcaagc gtcaaaggta ttgtaaataa
    19501 ggctcgaaaa gagttttaca ttaaactatg ggatcgagat gattgggaac aagaaggaat
    19561 gatgaccttg tttgaattgt tggaagctca accgtggcta gttgatgaac aagttcaatt
    19621 atattgttat tttaaagtca agttcagaaa tcgaatcaag gatcgtatcc gcaaacagga
    19681 aagtcaaaaa cgcaagtttg accgtatgcc acatgaagat attcacgaat tatctcacgc
    19741 aatacaatca ccgggattaa taaacgatga actattaatg ctaagaggtg ccttgagaga
    19801 ttatcgaaaa aatctgagta atgatcaact tgataaatac gaaaaattaa ttagcggaca
    19861 atgttttaat ggtcgccgtg aaatgatacg tgatttacaa attcatttga aagactttcg
    19921 ctaaagctag tcactaacat catgttaatc gaattaagaa attgggcaga agcaccataa
    19981 aaagttctgt tcagtttctt tttttatagg ttatagcaaa gagaagaagg aataggggga
    20041 aaaaaacaaa tttcaagtta aaattagcca tcctatctta tgaagagtag gggtgtgact
    20101 aaatgtgata ctcagccaat agtaacctaa gtaattgaaa gactgattca gcggtattat
    20161 ttagaattaa ccttatgctt tagtatctac atagaacttt cagtgtaaaa aaatcccaaa
    20221 aatcggttga caatgtatat aagtc
//
LOCUS       DASGCC010000023        20231 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.023, whole genome shotgun sequence.
ACCESSION   DASGCC010000023 DASGCC010000000
VERSION     DASGCC010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20231
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.023"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(293..1297)
                     /locus_tag="U1404_000582"
     CDS             complement(293..1297)
                     /locus_tag="U1404_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEM5347560.1"
                     /translation="MHLFTDDEKILSKLSEKGNPLERLDAVMNWNIFLPLLSELFSRK
                     DKVISRGGRPHLDYLMMFKVLLLQRLHNLSDDAMEYQLLDRISFRRFVGCHEDTVPDA
                     KTIWLYREKLTKSGREKELFDLFYAHLTDEGVIAHSGQIVDATFVECPKQRNSREDNQ
                     KIKKGEKIEGWNKTKRSQKDVDATWTRKGNVRYFGYKNHICVDRKSKLIKNYEVATAS
                     VHDSNVLAPLCDANEAVFDDSAYVGKSVPEGCRHHTIRRAFRNKPLTETDKVINRHIA
                     KVRCRVEHVFGFIEMSMKGSSCRSIGKARAKTNVTLTNLLYNICRFEQIKRLGLPSWA
                     "
     gene            1381..2685
                     /gene="celB"
                     /locus_tag="U1404_000583"
     CDS             1381..2685
                     /gene="celB"
                     /locus_tag="U1404_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013991084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIC"
                     /protein_id="HEM5347561.1"
                     /translation="MGPMGKLASYKVVRAITAAGMAAVPFTIVGSMFLVFSILPQAFS
                     FWPIVSDIFAASFDKFTPLYMVANTATMGVLSLYFALAIGYELTKIYAEEEELNLTPL
                     NGALLSLFAFIMTVPQIIFENGAMSAVTSLKEGAVIVDGWAMGGGVTRFGTTGIFTAI
                     IMAVAAVLLYRMCVKNNWVIKMPDSVPEGVSRGFTALIPSFVVAFFVIFLNGVLVALG
                     TDIFKVIAIPFSFVGNLTNTWIGLVIIYLLTQALWVVGIHGANIIFAFVSPIALANMS
                     LNAAGERMIVAGEFSNMFVIAGGSGATLGLCIWLATRARSEQLSAIGKAAIVPGIFNI
                     NEPLIFGLPIIYNPALAIPFMLAPIASMTVYYFSMKLNLINAVVAQVPWPTPVGIGAF
                     LGTADWRAIVVSIVCAVVAFLVYYPFIRAYDKQLLKEEAANA"
     gene            3091..4557
                     /gene="ascB"
                     /locus_tag="U1404_000584"
     CDS             3091..4557
                     /gene="ascB"
                     /locus_tag="U1404_000584"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5347562.1"
                     /translation="MTKQFPKGFLWGGATAANQYEGGWNLGGRGPATSDTYIAVDPDK
                     RKDMSHFGKPVSRADVEFALADQEGLYPKRWGSDFYHRYKEDIALFAEMGFKTFRLSI
                     AWSRIFPKGDELEPNEEGLAFYDAVFDELNKYGIEPLGTLSHYEFPLHLALEYGGWKN
                     RKVIEFFVRYAETVFKRYQGKVKYWLTFNEINILGMVGYLSGGLLFEDGKNDLEAMYQ
                     AVHHQFIASSLATKAAHEIDPENKVGCMLARMENYAATCNPDDVLAALKKDQENLFYT
                     DVQVRGAYPSYMKRFFKENNIQVVFEPGDEAILKQYPVDFMSFSYYMTSITRALPDKD
                     KATAGNLILGEANPYLEASDWGWQIDPVGLRITLNKLYDRYQVPLFIVENGLGALDKV
                     EADGSIEDGYRIAYLEKHIQQMYEAIEDGVELMGYTPWGCIDLVSASTSEMSKRYGFI
                     YVDADDQGKGSFDRSRKASFYWYKDVIASNGANVLTEK"
     gene            4566..5168
                     /locus_tag="U1404_000585"
     CDS             4566..5168
                     /locus_tag="U1404_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5347563.1"
                     /translation="MTKTIYLMRHGETLFNTQKRVQGWSDSPLTERGIAQAQAVGQYF
                     KEQGIVFTSAYSSTQERATDTLKLVTDAPYQQLKGLKEMNFGIFEAREEELLPKHRPG
                     ARSFEDLLVPFGGEDIRAVGSRVKEAILSVAESDPADPILMVSHGAAIWGLVQVLEVT
                     FPPGVFLPNCAICQLTVENEQIRFEKLIDSAHDFKVYDFK"
     gene            5180..5797
                     /locus_tag="U1404_000586"
     CDS             5180..5797
                     /locus_tag="U1404_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5347564.1"
                     /translation="MNYLYLMRPGQTRFNQQGRIQGACDSPLTELGREQALAAHQYFQ
                     EQGIEFDKIYSSTQERACDTAELVTGRTDYIRLKGLKEQDFGAFEGQQEYLNPPLQGD
                     IGYGDYFVTFGGESYQDVRQRMVETIGGIMEEADNQSVLVVSHGAAIAQFFRQVLTDY
                     PQVRMRNCAILTFTYEDGHYDLQSIVDPVNKENLYQKEGKEKEKK"
     gene            5794..7233
                     /locus_tag="U1404_000587"
     CDS             5794..7233
                     /locus_tag="U1404_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5347565.1"
                     /translation="MTVTKVFPKGFLWGGATAANQCEGAYDVDGRGLANVDVVPIGQD
                     RAAIITGRKKMFDFEDGYFYPAKESIDMYHHFKEDIALFGEMGFKTYRLSIAWSRIFP
                     KGDELEPNEKGLQFYEDLFKECHKYGIEPLVTITHFDCPMHLIENYGGWRNRKMLEFY
                     ERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENVEQVKYQAAHHELV
                     ASAIATKLAHEIDPENKVGCMLAAGQYYPHTCHPRDVWEALQEDRENYFFIDVQARGY
                     YPNYAKKKWERAGIEIEMTNQDLALLKEHTVDFISFSYYSSRVASGDPVEKEKTAGNI
                     FASIKNPYLDASEWGWQIDPLGFRITINSIWDRYQKPLFVVENGLGAVDTPDENGYVE
                     DDYRIDYLRQHVLAMRDAIVEDGVELMGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDN
                     EGNGTLKRSKKKSFEWYKKVIATNGADVG"
     gene            7317..8306
                     /locus_tag="U1404_000588"
     CDS             7317..8306
                     /locus_tag="U1404_000588"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014677692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HEM5347566.1"
                     /translation="MKYIVNNSNDPAYNIALEAYAFKELTDIDEIFILWINEPAIIIG
                     KHQNAIEEINKEFTDEKGIHVVRRLSGGGAVYHDLNNLNYTIISNKADEGAFDFKTFS
                     KPVIDTLATLGVEANFTGRNDLEIDGKKICGNAQAYAKGRMMHHGCLLFDVDMSVLAS
                     ALKVSKDKIESKGVKSVRARVTNINNELPEKMTVLEFKDAILNQMKQEYPDMDEYVLS
                     EGDLARIQEICDTQFATWDWTYGQTPEYTVERSVRYPAGKITTYIKAEKSVIESIKIY
                     GDFFGIGDVSDIEDLLVGTRYEYADVLAKLQEIDTTHYFSRMTTEEVAKAIVA"
     gene            8478..8768
                     /locus_tag="U1404_000589"
     CDS             8478..8768
                     /locus_tag="U1404_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEM5347567.1"
                     /translation="MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATIVESKAWE
                     KRRLAYEIKDFREGLYHIVNVEANNDEALKEFDRLSKINGDILRHMIVKLDA"
     gene            8780..9274
                     /locus_tag="U1404_000590"
     CDS             8780..9274
                     /locus_tag="U1404_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM5347568.1"
                     /translation="MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGER
                     EADFINVVIWRQQAENLANWAKKGALIGVTGRIQTRSYDNQQGQRVYVTEVVAESFQL
                     LESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
                     DLPF"
     gene            9307..9546
                     /locus_tag="U1404_000591"
     CDS             9307..9546
                     /locus_tag="U1404_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002983142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEM5347569.1"
                     /translation="MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFISERGKI
                     LPRRVTGTSAKNQRKVTTAIKRARVMALLPFVNED"
     gene            complement(9883..10539)
                     /locus_tag="U1404_000592"
     CDS             complement(9883..10539)
                     /locus_tag="U1404_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HEM5347570.1"
                     /translation="MSFIEINGLTKKNQEFIHIATNQLIKDGKSDSEIKELLEEILPT
                     IIEKQKTGVTARNLYGAPSEWAASKTISEQEKKDQVEYNENPWLMWLDSSLFMLAIIA
                     GINGLMNLFGQGAQYGLLTLFVIGFGVGAGMYLMYHFVYREQIKTGQRPKLLKAIAFL
                     GLATLAWSVVFILAALIPAAFNPVLPPLVTILIGAAAFGARYLLKKKYNIRNAMSPVQ
                     "
     gene            complement(10555..11499)
                     /locus_tag="U1404_000593"
     CDS             complement(10555..11499)
                     /locus_tag="U1404_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004250490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM5347571.1"
                     /translation="MKQIFLSTMTDLEEIQTFEPGAWINLVNPSQSESMEVAEHYKID
                     IADLRAPLDAEESSRITVEDDYTLILVDVPILEERNNKTYYITIPLGIILTDDAIITT
                     CLEPLPLFEQFIHRRLRNFFTFMKSRFVFQILYRNAQLYLSALRTIDRKSEEIEKQLH
                     EATRNEELIVLMELEKTIVYFKASLKTNERLVKKLASSSRLLRKYEEDEDLLEDTLVE
                     TQQAIEMADIYGSILNSMTHAFASIISNNQNTIMKTLALVTIVLSIPTMVFSAYGMNF
                     KDNIIPFNDIPYAFWWIILFAFAISLSLTFYFIRKRWF"
     gene            12293..15118
                     /gene="uvrA"
                     /locus_tag="U1404_000594"
     CDS             12293..15118
                     /gene="uvrA"
                     /locus_tag="U1404_000594"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM5347572.1"
                     /translation="MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFD
                     TLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTA
                     TEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
                     GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRL
                     FDSIEAALRIADGYVIIDTMDEKELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCS
                     DCDGLGMKLEVDMDLIVPDASKTLRDGALAPWNPISSNYYPQMLEQAMNHFGVDMDKP
                     FEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYT
                     RTVMKTYMNELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIEHLTL
                     SENEAIIATPIVKEIKDRLSFLNNVGLNYLTLSRAAGTLSGGESQRIRLATQIGSNLS
                     GVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLIDIGPGA
                     GVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNL
                     QDVTVRFPLGKFVAVTGVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHL
                     DRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRC
                     EACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVE
                     FFKHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYIL
                     DEPTTGLHTEDIAQLLKVLARFVDDGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGT
                     VVATGTPEEVASNPASFTGQYLKMKLK"
     gene            15217..16278
                     /locus_tag="U1404_000595"
     CDS             15217..16278
                     /locus_tag="U1404_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM5347573.1"
                     /translation="MQARVEKFEAKLAQSDVDGILVTGQNNIYYLTGFWGTEATVFIS
                     GKRRLFVTDSRYTLIAKASVKGFDIIESRFALEEIAKVIKEDGLEKIGFDSEVTYGFY
                     QSLTSIFEGYQLVAMSNFIEDLRMIKDEKEIATIRRACQISDQAFIDVLDFIKPGQTT
                     EMDVNHFLDHRMRQLGAEGASFEFIVASGYRSAMPHGRASEKVIQAGETLTLDFGCYY
                     QHYVSDMTRTIHIGHVTDQEREIYDVVLRANKALIEQAKEGVTYREFDAIPREIINAA
                     GYGANFTHGIGHGIGLDIHEYPYFGKSDETIKAGMVLTDEPGIYLDDKYGVRIEDDLL
                     ITENGCEVLTLAPKELIVI"
     gene            16342..16899
                     /gene="efp"
                     /locus_tag="U1404_000596"
     CDS             16342..16899
                     /gene="efp"
                     /locus_tag="U1404_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEM5347574.1"
                     /translation="MIEASKLRAGMTFEAEGKLIKVLDASHHKPGKGNTIMRMKLRDV
                     RTGSTFDTTYRPDEKFEQAIIETVPAQYLYQMDDTAYFMNTETYDQYEIPVATIKEEL
                     LYILENSDVKIQFYGTEVIGVTVPTTVELVVAETQPSIKGATVTGSGKPATMETGLVV
                     NVPDFIEAGQKLVINTAEGTYVSRA"
     gene            16927..17319
                     /locus_tag="U1404_000597"
     CDS             16927..17319
                     /locus_tag="U1404_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM5347575.1"
                     /translation="MTTEYQGEIVIAPRVLEVITGIAAAKVDGVHSLQNKRVADSLSK
                     TSLNKGVYLETDEEGRVTADIYVYLEYGVNVPAVSMDIQRAVKTAVYNYAEVQVAAVN
                     IHVSGIVPDKTPKPALKDLFGEDFLDEE"
     gene            17309..17728
                     /gene="nusB"
                     /locus_tag="U1404_000598"
     CDS             17309..17728
                     /gene="nusB"
                     /locus_tag="U1404_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEM5347576.1"
                     /translation="MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGV
                     EIPLFLLNLVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEET
                     PDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIKEEA"
     gene            complement(17807..18772)
                     /locus_tag="U1404_000599"
     CDS             complement(17807..18772)
                     /locus_tag="U1404_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5347577.1"
                     /translation="MVAKLTDVAQLAGVSPTTVSRVINKKGYLSEKTIRNVEEAMREL
                     GYKPNNLARSLQGKSAKLVGLIFPTINNIFYSELISHLEKELFDRGYKTIICNSQHES
                     DKEREYLEMLAANQVDGIISGSHNLGIQDYDRVVAPIIAFDRNLSPSIPIVSSDNFAG
                     GVLAAQTLQKAGCHNPLMITGNDDSNSPTGLRQVGFTSILNKAEVFHISSDFSPVRKE
                     MEIRAILEKQKPDGIFVSGDATAMLVWNVIRSMKLSIPEDIKLIGYDGTSFIENYYPQ
                     LTTIKQPLTEIARLLVELLVDKIEGKKLTKTDYILPISLLAGASI"
     gene            complement(18753..20207)
                     /locus_tag="U1404_000600"
     CDS             complement(18753..20207)
                     /locus_tag="U1404_000600"
                     /EC_number="3.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-6-phosphate hydrolase"
                     /protein_id="HEM5347578.1"
                     /translation="MAFTTEERYRAYADWTPEYIEKIKKNTENSPWRTNFHIETPHGL
                     LNDPNGFSYFNGKWTLFYQYFPFGAAHGLKSWVHTESTDLVHFEKTGTVMYPDTPLDS
                     HGAYSGSAMEFGDKLFLFYTGNVRDENWVRHPYQIGALMDKDGKIEKIDKVLIEQPED
                     TTDHFRDPQIFNYKGQYYAIVGGQNLDKKGIVKLYKAENNDYLNWSYVGDLDFANDMT
                     AYMMECPNIAFVGEQPILLYCPQGLDKEVLDYSNIYPNMYKIGQSFDPETASIVEPSE
                     LINLDYGFECYATQAFNAPDGRTLSVSWLALPDVEYPTDAYDYQGCLSLVKELTIKDG
                     KLYQYPVDAITSLRKEAQPFSAQKETNNVYELELDFSAGTKHEIVLFANEAEKGLVLS
                     VDTEQGQITLDRGNCGQPFALDFGTSRSCEISPGALTANIFIDKSVFEIFINKGEKVF
                     SGRVFPDADQSGIVITTGNPTGTYYHLDYGRKTN"
BASE COUNT         5697 a         4064 c         4625 g         5845 t
ORIGIN      
        1 atgagtcttt ctaatgagtt gtttagtcgc ttttcattat aggtcatatg ggactttttt
       61 tctatactca aaaaggctcc ataatctcca cggtggtttt acccactaca gaaattatag
      121 agccacaata cattgaaaag gatgacagta gcaaagagtt gttactgttt ttcttatggg
      181 cacctctaaa aacttcaagt agttgttaag taagccctaa ttgtaagcat tatttccagt
      241 aagcttcact ttcgaagctt actttttgct tattttccta tttttgggcg cactaagccc
      301 acgatggcaa tcccagtcgt ttgatttgct caaaacgaca gatattgtag agcaggttgg
      361 ttaaggtgac attggtttta gctcgtgcct tcccaattga tcgacagctg ctacctttca
      421 tgctcatttc aatgaagcca aaaacatgct caacgcgaca acggactttg gcaatatgtc
      481 gattaatgac cttatcagtc tcggtcaacg gtttatttct aaacgcacga cgaatcgtgt
      541 ggtggcgaca accttctggc actgattttc caacataagc actgtcatca aaaaccgctt
      601 cattggcatc acaaagagga gctaggacat tggagtcgtg tacactagct gttgcgacct
      661 cgtaattttt gataagtttt gattttctat cgacacaaat atggttttta tagccaaaat
      721 agcggacatt acctttgcgt gtccaagtcg catctacgtc tttttggctc cgtttagtct
      781 tattccaacc ttctatcttt tcgcctttct tgattttctg attgtcttca cgtgaattgc
      841 gttgtttagg gcattcgaca aaggtagcat ccacaatctg acctgaatgg gcaatcaccc
      901 cttcatctgt gagatgggca tagaacaaat cgaacaactc tttttcacga cctgacttgg
      961 ttaatttctc acgatagagc cagatagttt tcgcatcggg aacagtgtct tcatgacaac
     1021 caacaaaacg acgaaaagat atacgatcca acagttgata ttccatggca tcgtcagata
     1081 ggttatgaag acgttgaagc aagagcactt tgaacatcat gagatagtct aggtgaggac
     1141 gaccgccacg actgatgact ttatctttac gactgaataa ctctgacaac aatggaagaa
     1201 agatattcca attcataacg gcatccaaac gttctaaggg attgcctttc tctgatagtt
     1261 ttgacaagat tttttcatcg tctgtgaata aatgcatgac agctctcctc atgacttttt
     1321 attctattat ctcatttttg ggaaatttag ggagttttta gaggtgccca taaatatctg
     1381 atgggaccaa tgggtaaact ggcatcttac aaagttgtac gtgccatcac agctgcaggt
     1441 atggctgccg taccatttac gattgttggt tcgatgttct tggttttcag tatcttacca
     1501 caggcatttt cattctggcc aatcgtttca gatatttttg cggcatcttt tgataaattt
     1561 accccactct atatggttgc caatactgct actatggggg tgctatcact ttattttgca
     1621 cttgctattg gatatgaatt gacaaaaatt tatgctgagg aagaagagtt aaatctaaca
     1681 cctttgaacg gtgccctttt atcacttttc gctttcataa tgactgtgcc acaaattatc
     1741 tttgaaaatg gtgctatgtc agcagttact tcacttaaag aaggtgcagt aattgttgat
     1801 ggttgggcaa tgggtggtgg cgtaacacgc tttggtacaa caggtatatt tacggcaatc
     1861 atcatggctg ttgcggcagt tctgctatat cggatgtgcg tgaaaaataa ttgggttatc
     1921 aaaatgcccg attcagtacc agagggtgta tcacgcggat ttacagcttt gattccttca
     1981 tttgtcgtag ccttctttgt aattttcttg aacggtgtat tggttgcgct tggtactgat
     2041 atatttaaag ttattgcaat tccatttagc tttgttggaa atttaacaaa tacttggatt
     2101 ggtttagtta ttatctactt gttgactcag gcactttggg tagtaggtat tcacggtgca
     2161 aatatcatct ttgcttttgt tagtccaatt gcacttgcaa atatgtctct taatgcagct
     2221 ggtgaacgaa tgattgttgc aggtgagttc tcaaatatgt ttgtcattgc aggtggttct
     2281 ggtgcaacac ttgggctatg tatttggtta gctactcgtg ctcgttctga acaattgagt
     2341 gcgattggta aagcagcaat tgttccgggt atttttaata tcaatgaacc attaattttc
     2401 ggtttaccaa ttatttataa tcctgctcta gcaataccat ttatgcttgc accaattgca
     2461 tctatgacgg tatattactt ctctatgaag ttgaatctta tcaatgcagt tgttgctcaa
     2521 gtaccatggc caactccagt tggtattggt gccttccttg gtacagctga ctggcgtgca
     2581 attgttgttt caattgtttg tgcagttgtt gccttccttg tttactatcc attcattcgt
     2641 gcatacgata aacagttgct aaaagaagaa gcggcaaatg cttaaactag agaaactcct
     2701 tgacttcttc taagtccaag gagtttttct ataagagaat atcaggagac attgttagat
     2761 aaacataaga tagtatcata tttgctttct tctttctaaa tcagaggagc tgaggtaggg
     2821 caagagaaga agatttttta tagctgactt gatgaagcga ctatcaatac atatggaggc
     2881 ttaaaaatat ctctactact tttgctaata ctgatcgaga gaaaacctct cccttgttcc
     2941 aagttttaat tgggatatta tctaatgttt taagaatagt gataattgga aatagcatag
     3001 aatagtatca gtttggcata ttatcacgta ggaatgaagg gggttctttt gctattatat
     3061 agctaataaa gtcagaagga gtattgtgct atgacaaaac aatttccaaa aggatttctt
     3121 tggggcggtg caacagcggc caaccaatat gaaggtggtt ggaatttggg aggtcgtggt
     3181 ccagccactt ccgataccta tatagcggtc gatccagata agcggaagga tatgagtcac
     3241 tttggtaagc ctgtctcgcg ggctgatgtg gaatttgcct tggcagatca agaaggactc
     3301 tacccaaaac gttggggttc tgatttctat catcgctaca aggaagacat cgccctcttt
     3361 gcagaaatgg gcttcaagac cttccgcttg tcgattgcct ggtctcgtat ttttccaaaa
     3421 ggagacgagt tagaaccgaa tgaagaagga ctggcctttt atgatgcggt cttcgatgag
     3481 ctgaataaat atggtatcga gccactgggg accctatctc actatgaatt tcctcttcat
     3541 cttgctctag aatacggtgg ctggaaaaac cgtaaggtca tagagttctt tgttcgctat
     3601 gccgagacag tattcaaacg ctatcagggt aaagttaagt attggctgac ttttaatgag
     3661 atcaatattt tgggcatggt tggttatcta tcaggcggtc ttctcttcga agacggaaag
     3721 aatgacctag aagccatgta ccaagcagtt caccatcagt ttatcgcttc tagtttggca
     3781 acaaaagctg cccatgaaat tgacccagaa aacaaggttg gttgcatgct ggcacggatg
     3841 gagaactatg cagccacctg caatccagac gatgtcttgg cggccttgaa aaaagaccag
     3901 gaaaatctct tctatacaga tgtgcaggtg cgtggagcct acccaagtta tatgaaacgc
     3961 ttcttcaaag aaaacaatat ccaggtcgtg ttcgagccgg gagacgaagc gattttgaaa
     4021 caatatcctg ttgatttcat gagtttttct tactatatga catccatcac ccgtgctctt
     4081 ccagacaagg acaaggcaac ggcaggtaat ttgatactag gagaggccaa tccttatctg
     4141 gaagcgtcgg actggggctg gcagatagac cctgtcggac ttcgtatcac cctcaacaag
     4201 ctttatgacc gttaccaagt tcccctcttc atcgtggaaa atggtctggg agccttggat
     4261 aaggtggagg cagacggcag tattgaggac ggctaccgta ttgcctacct agaaaaacac
     4321 atccagcaaa tgtatgaagc tattgaagac ggtgtggaac ttatgggcta taccccttgg
     4381 ggctgtatcg atctggtttc tgcttcaacc agtgagatgt ccaaacgcta cggctttatc
     4441 tatgtggatg cggacgatca aggaaagggc agttttgacc gatcacggaa ggcatcattc
     4501 tactggtata aagatgtcat tgccagcaat ggagccaatg tattgacaga aaaataggag
     4561 gtcttatgac aaaaacgatt tatctcatgc gtcatggtga aaccctcttt aatacgcaaa
     4621 aacgagtgca gggttggtcg gattctccct tgacagaacg tggtatcgct caggcccaag
     4681 ccgttggtca gtattttaag gagcagggaa tcgtctttac cagtgcctat tcttccacgc
     4741 aagagagggc tactgataca ctaaaattag ttacggatgc tccctaccaa cagctcaagg
     4801 ggctcaagga gatgaacttc gggatttttg aagccagaga ggaagaattg cttcccaagc
     4861 accgtccagg tgctcgctct ttcgaagacc tcttggttcc atttggaggc gaggatattc
     4921 gagcagttgg aagtcgtgtc aaagaagcga ttctctctgt cgcggaaagc gatccagctg
     4981 atccaatcct catggtcagt catggtgcag ccatttgggg attggtgcag gttttggagg
     5041 tcaccttccc accaggcgtc ttcctgccta actgtgccat ttgccagctg actgttgaaa
     5101 atgagcaaat acgatttgaa aaactgattg attccgcaca tgattttaag gtttatgatt
     5161 ttaagtaagg aggtttagta tgaactatct ttacttgatg cgccctggac aaactcggtt
     5221 taatcaacaa ggtcggattc aaggggcctg tgattctccc ctgacagaac tgggaagaga
     5281 gcaagcacta gctgctcacc agtattttca agagcaaggg attgagttcg ataaaatcta
     5341 ttcttcaacc caagaacgtg cctgtgatac ggcagaattg gtcacaggga ggacggatta
     5401 tatccgcttg aaagggttga aagaacagga tttcggagcc ttcgagggtc aacaggaata
     5461 cctcaatcct cccttacagg gagacattgg ctacggtgat tattttgtca cctttggagg
     5521 cgaatcctat caagatgtcc gacaacgaat ggtcgaaacc attgggggca tcatggaaga
     5581 agcagacaat caatctgttt tagtagttag ccatggagct gccatagccc aatttttcag
     5641 gcaggtattg acagattatc cgcaagttcg gatgcgtaat tgtgccatac tgacttttac
     5701 ttatgaagac ggtcactacg atttgcaaag cattgtggat cccgttaata aagaaaatct
     5761 ctatcaaaaa gaaggaaagg aaaaggagaa aaaatgacag taacaaaagt atttccaaaa
     5821 ggatttttat ggggtggtgc aacagcagcc aaccaatgtg aaggagctta cgatgtagac
     5881 ggacgtggac ttgccaatgt tgacgtagtt ccaattggcc aagaccgagc tgccattatc
     5941 actggtcgta agaagatgtt tgactttgag gacggttatt tctatccagc caaggagtct
     6001 attgatatgt atcatcactt caaggaggat attgctctct ttggtgaaat gggctttaag
     6061 acctatcgtc tttcaatcgc ctggtcccgt attttcccta agggagacga attggagcct
     6121 aatgaaaaag gcctgcaatt ttacgaggac ttgttcaagg aatgtcacaa gtatggtatt
     6181 gagccattgg tgaccatcac ccactttgac tgcccgatgc acttgattga gaactacggt
     6241 ggctggcgaa atcgtaaaat gcttgaattt tacgaacgcc tttgccgtac cctcttcaca
     6301 cgctacaagg gcttggtcaa atactggctg accttcaacg aaatcaacat gattctccac
     6361 gcaccattta tgggggcagg tctgtatttt gaagaaggcg aaaatgtgga acaggttaaa
     6421 taccaggctg cccaccacga gcttgttgcc tctgccattg ctactaaatt agcccatgaa
     6481 atcgatccgg aaaacaaggt cggttgtatg ttggctgcag gtcaatacta cccacacacc
     6541 tgccacccac gtgatgtatg ggaagctctg caagaagacc gtgagaacta tttctttatc
     6601 gatgttcagg cacgtggcta ttatccaaac tatgccaaga agaagtggga gcgtgcaggt
     6661 atcgagattg aaatgaccaa ccaagaccta gcactcctga aagagcatac ggtggacttt
     6721 atttccttct cttactactc tagccgtgtg gcttctggag atcctgtaga gaaggaaaaa
     6781 acagcaggca atatctttgc ttccattaaa aatccttacc tagacgcatc agaatggggc
     6841 tggcagattg acccgctcgg tttccgcatt accatcaatt ccatatggga tcgctatcaa
     6901 aaaccactct ttgtggttga aaatggtctg ggagcagtcg acacgccaga tgaaaacggc
     6961 tatgtggaag acgactaccg tattgactat ctccgccaac atgtcttggc aatgagagat
     7021 gctattgtcg aagacggtgt tgaactcatg ggctatacca cttggggctg tattgaccta
     7081 gtgtctgccg gaacgggcga aatgaaaaaa cgctacggct tcatctacgt tgaccgtgac
     7141 aatgagggaa atggcacact caaacgctct aagaaaaaat catttgaatg gtataaaaaa
     7201 gtcatcgcta caaacggagc ggatgtggga taaaacacga gagacaggtc ttcggacttg
     7261 tcttttgtta tcgtttccac tataataaaa attagttaac aataaaggag ttttgcatga
     7321 aatacatcgt aaacaacagc aatgatccag cttataacat tgccctcgaa gcctacgctt
     7381 tcaaggaatt aacagatatt gacgaaattt ttatcctttg gatcaatgag cctgccatca
     7441 ttatcggtaa gcaccagaat gctattgaag aaatcaacaa ggaattcaca gacgaaaagg
     7501 gcatccatgt ggttcgccgt ctgtcaggtg gtggcgctgt ctatcatgac ctcaataacc
     7561 taaactacac cattatttca aacaaggcag acgagggagc ttttgacttc aaaaccttct
     7621 ccaagccagt tattgatact ctggcaacac tgggtgttga ggccaatttc acaggccgta
     7681 atgacctgga aatcgacgga aagaaaatct gtggtaacgc ccaagcctat gccaaaggtc
     7741 gcatgatgca ccacggttgc ttgctctttg atgtggatat gtcagtcctc gcaagtgccc
     7801 tcaaggtcag caaggacaag attgaatcca agggtgtcaa gtcagtccgt gcccgtgtga
     7861 ccaatatcaa caacgaattg ccagagaaga tgacagtctt ggagttcaaa gatgctatcc
     7921 tcaaccagat gaagcaagaa tacccagaca tggacgagta tgtcttgtca gaaggtgact
     7981 tggctcgtat ccaagaaatc tgtgataccc agtttgcgac atgggattgg acctacggtc
     8041 aaacaccaga atacacagtg gagcgtagcg tgcgttaccc agctggtaaa atcacaacct
     8101 acatcaaggc tgaaaaatca gtcatcgaat ctatcaagat ttacggagac ttcttcggta
     8161 tcggtgatgt atcggatatt gaagacttgc tggtcggtac tcgttacgag tatgcagatg
     8221 tgcttgccaa attgcaagaa atcgacacca cgcactattt ctcacgcatg acaacagaag
     8281 aagtagcaaa agcgattgta gcttaatcca tagggctgcc ctttgtttgg gcagtcttta
     8341 ttttttgtga aaatgttttc ggcaaactgt tttcacttgc acattttcta tattatggta
     8401 taattatttt ctgtgagtat ccctcactta ctcgtggcta gaccatgagt cattagacca
     8461 aaaggaggaa catatcaatg gctaaatacg aaattcttta tattattcgt ccaaacattg
     8521 aagaagaagc taaaaacgct ttggtagcac gctttgactc tatcttgact gacaacggtg
     8581 caactatcgt tgaatcaaaa gcatgggaaa aacgtcgcct tgcatacgaa atcaaagatt
     8641 tccgcgaagg tttgtaccac atcgttaacg ttgaagctaa caacgatgaa gctcttaaag
     8701 agtttgaccg tttgtcaaaa atcaacggcg acattcttcg tcacatgatt gtcaaacttg
     8761 acgcgtaaga aggtgttgta tgattaataa tgtagtattg gttggtcgta tgacccgtga
     8821 tgcagaactt cgttatactc cgtctaatca agctgttgcg acttttactt tggcggttaa
     8881 ccgcaatttt aaaaatcaaa acggtgagcg tgaagcggac tttatcaacg tagtcatttg
     8941 gcgtcaacaa gctgagaatt tggcgaattg ggctaagaaa ggtgctctaa ttggtgttac
     9001 aggtcgtatc cagacacgta gctatgataa tcagcaaggg caacgtgtct acgttactga
     9061 ggtagttgca gaaagtttcc aactcttgga aagccgtact gcccgtgaag gtcaaggtgg
     9121 aggctattca gctggcaact cgtttgctgg aggaaatgac tataactcgc cttatcaagc
     9181 gcctgcacaa tctacaccaa acttcgctcg agaagagagt ccatttggag caagtaatcc
     9241 aatggatata tcagacgatg acctaccatt ctaggtcaaa aattaataat ataaaggaga
     9301 acacacatgg ctcaacaacg tcgtggcggt ttcaaacgcc gtaaaaaagt tgactatatc
     9361 gcagctaaca aaattgaata tgttgattac aaagatactg agcttcttag ccgtttcatt
     9421 tctgaacgtg gaaaaattct tccacgccgt gtaactggaa cttcagctaa aaaccaacgt
     9481 aaagtaacaa cagctatcaa acgtgctcgc gttatggctc ttttaccatt cgtaaacgaa
     9541 gattaaaaaa atggtccagt ggaccatttt ttcatgagct cgaaattaag aaagcgaatt
     9601 aagtccttga atggactgtt ttttcacgag catgaaaata agaaagcgag taatggtcca
     9661 gtggaccatt ttttcatgag ctcgaaatta agaaagcgaa ttaagtcctt gaatggactg
     9721 ttttaaccct agccaagaag ttagaaagcg aggcacagtc tggggataga ctgtttcagc
     9781 agattacata gacaagtgac agcggataaa gttctcgggc gatttgatag ctgaactgta
     9841 tagataaaca aaagcgactg gaattccaat cgctttgttt tattattgaa ctggggacat
     9901 ggcattgcga atgttatatt tctttttcag gaggtagcgt gcaccgaaag cagcagctcc
     9961 gataagaata gtaacaagcg gagggagaac agggttaaat gcggccggaa tcagtgctgc
    10021 cagaatgaaa acgactgacc aagccagcgt agcaagtccg agaaaagcga tagctttcag
    10081 caatttagga cgttgcccag ttttaatttg ttctctgtaa acgaaatggt acatcaagta
    10141 catccctgca ccaacaccga aaccgatgac aaataaggtt aatagcccat actgtgcacc
    10201 ttgaccaaaa agattcatca aaccattgat accagcaata attgcaagca tgaaaagact
    10261 agaatctagc cacatcaacc atggattttc attgtattcc acttggtctt tcttttcctg
    10321 ttcagaaatt gtcttactag cagcccactc acttggtgct ccatagagat tgcgggcagt
    10381 cacaccagtt ttttgctttt caatgatagt tggtaaaatt tcttccaaga gttctttgat
    10441 ttcgctatca gactttccat ctttaatcag ttggttggtc gcaatatgga taaattcttg
    10501 gttctttttt gttaatccgt tgatttctat aaatgacatg ttaatctcct taggttaaaa
    10561 ccatctctta cggatgaagt agaaggtgag tgataggctg atcgcaaatg cgaagaggat
    10621 aatccaccaa aaagcatagg gaatatcgtt aaaaggaatg atgttgtcct taaagttcat
    10681 accgtatgca gagaagacca tggttgggat agagagaacg attgtcacta atgccaaggt
    10741 tttcatgatg gtattctggt tgttagaaat gatagaagca aaggcatggg tcatagagtt
    10801 caggatggaa ccatagatgt ctgccatctc aatggcctgt tgggtttcga ccaaggtatc
    10861 ttcaagcaaa tcctcatcct cttcatactt acggagtaga cgtgaggaac tagcaagttt
    10921 tttgaccaaa cgctcattgg ttttgaggga agccttgaag tagacgatgg ttttttctaa
    10981 ttccatgagt acaattaatt cttcatttcg agtggcttca tggagttgct tctcaatctc
    11041 ttcgctcttt ctgtcaatgg tccgtagggc tgacaagtag agttgagcat ttcggtagag
    11101 aatttggaaa acgaaacgag acttcatgaa agtgaagaaa ttccgtagac gacgatggat
    11161 aaactgctca aacagtggca atggttccaa acaagtcgtg ataatcgcat catctgttag
    11221 aataattccc aaaggaatag taatataata tgtcttgttg tttcgttctt caagaattgg
    11281 gacgtcgacc aggatgagcg tatagtcatc ttcgacggtg atacgagagg attcttccgc
    11341 atcgagcggt gctcgcaggt cagcgatgtc aattttatag tgctcagcca cttccataga
    11401 ctcgctctgg gaggggttga ccaaattaat ccaagcccct ggttcaaagg tttggatttc
    11461 ttctaaatca gtcatggttg atagaaaaat ttgtttcata tctttgccct ccttttatct
    11521 ttgttgcgtt aacgcaacct ctattatacc aaaaaatgtg cagtttcgga aaggttttat
    11581 atagaaatgt gatataatat gtagacattt aagcgaataa gttgtacgga cttttccttg
    11641 ttccgtatac catagcttat agcctcttaa gaaaggaaat gaatgcgtgc taaaaaaact
    11701 agcaaaaaag atacgcagcc gtttcagctt cagctgatta cggatgtgga tgctgtaaag
    11761 tgcaaatctt ctcgtgtgtt tggcacactt cgcagatttc ctatttttgt acggttttct
    11821 taacgtgaga ttttcaaaac gatatttttt gaaaatcgag ctaatacaag atatagaaat
    11881 tgcccatagg cagtttcgtc tggtgacgcg gagttaatcg accgtcacca gttatcttgt
    11941 gaacgcacat atatctagaa aggaattgaa cacgccctaa acgctgtgtg aaaaattgct
    12001 ggtttcttca tgtttaagcg tgtggaactg gcttctgcgt cgtagacatc tgtgctttct
    12061 tcggttttcg acctgtgaaa gcactagttg tcttgacggg ggtgcgtctt cgaaatcaca
    12121 gatttcggac ttaccgccta ttttcaccgt gcgttttacg ggctctgtat cttagaaagg
    12181 attcgaatgc gtgctaaaaa cctagcaaaa aagataaatc ttctcgtgtg tttggcacac
    12241 tttgcagatt tcctattttt gtacggtttt cttaacgcac ttatatcatg ttatgcaaga
    12301 aaatattgtg attcatgggg cgcgtgccca taatttgaaa aatattgatg tgaccattcc
    12361 gcgtgagaag ttggtggtgg tgactggttt gtcaggctct ggtaagtcga gtttggcttt
    12421 tgataccttg tatgccgaag gccaacgccg ctacgtagag tccttgtctg cctatgctcg
    12481 tcagttcttg ggcaacatgg acaagccaga tgtggattcc atagagggtc tcagccctgc
    12541 tatttccatt gaccaaaaaa caacctcgcg taatccgcgt tcgacagtcg gtacagcgac
    12601 ggaaatcaat gactatctcc gcctgctcta tgctcgagtt ggggtgcctt actgtatcaa
    12661 cgggcatggg gcgattgcgg cttcttcggt ggaacaaatc gttgatgaag ttttggaatt
    12721 gccagagcgt caacgcttgc aaattttggc gccgattgtt cgtaagaaaa aagggcaaca
    12781 caagactatt tttgagaagg tgcagaagga tggctatgtt cgggttcgtg ttaatggtga
    12841 tgtctatgat gtgtcggaag tgcccgagtt gtccaagagc aaggctcata atattgaagt
    12901 cgttgtcgat cgaattgtga taaaagaagg tattcgctct cggcttttcg attctatcga
    12961 agcggccctg cggattgcgg acggctatgt catcatcgac actatggatg agaaggaact
    13021 gctcttctct gagtactatg cctgcccagt ttgtggtttt acggtaccag agttggagcc
    13081 tcgcctcttc tctttcaatg ctccttttgg gtcttgtagc gactgtgacg gtttgggtat
    13141 gaagctggaa gtggatatgg atttgattgt cccagatgcc agcaagacct tgcgtgacgg
    13201 ggctttggct ccgtggaatc ctatttcttc taactactat cctcaaatgt tggagcaggc
    13261 catgaatcac tttggtgtag atatggacaa acctttcgag gaattgacag aagaggagaa
    13321 gaacctgatt ttcaacggtt ctgacgggaa agaattccat ttccattatg aaaatgagtt
    13381 cggtggggtg cgtgatattg acattccatt cgagggcttg attaccaaca ttaatcgccg
    13441 ctatcgtgaa accaacagtg actatacgcg gactgttatg aagacttaca tgaatgagct
    13501 gacctgtgga acctgccacg gctatcgcct caatgaccaa gccctgtctg tcaaagttgg
    13561 tggcgagcag ggacttcata tcgggcagtt gtctgatttg tccgtagcgg atcatttgca
    13621 agtgattgaa catctgacct tgtctgaaaa tgaagccatc attgcaacac cgattgtcaa
    13681 ggaaatcaag gaccgcctgt ccttccttaa taacgttggt ctcaactatc tgactctttc
    13741 acgagcagca ggtacccttt ctggtggtga gagccagcgg attcgtctgg cgactcagat
    13801 tggctctaac ctgtctggtg ttctttacat cttggatgag ccatcgattg gtctgcacca
    13861 gcgggacaat gaccgcctga ttgctagtct taagaaaatg cgtgatttgg gaaataccct
    13921 gattgttgtt gagcatgatg aggacaccat gcgtgaggcg gactggttga ttgacatcgg
    13981 tccaggtgca ggtgtctttg gcggagaaat cgtggcctct ggaacgcctg cccaagtagc
    14041 taagaataaa aaatccatta caggccaata cctgtctggc aaacgtgaaa ttccagttcc
    14101 tttggaacgt cgtgttggca atggtcgatt cctggaggta acaggtgcca aggaaaacaa
    14161 cctgcaagat gtgactgttc gtttcccact cggaaaattt gtggcggtga caggggtgtc
    14221 tggctctggt aagtcaactc tggtcaattc cattctgaaa aaagctattg ctcagaaact
    14281 caatcgcaat tcggacaagc cgggcaagtt caagtccatt tcaggaattg aacacttgga
    14341 ccgcctgatt gacattgacc aaagtccgat tggacggaca ccgcgttcta acccagctac
    14401 ctacacaggt gtctttgacg atattcggga cctctttgcc cagaccaatg aagccaaaat
    14461 ccgtggctac aagaagggac gtttctcctt taacgtcaaa ggtggtcgtt gtgaggcttg
    14521 ttctggtgat ggtatcatca agattgaaat gcacttcctg ccagatgtct ttgtaccttg
    14581 tgaagtctgt catggacacc gctacaattc tgaaaccttg gaagtacatt acaaggagaa
    14641 aaatatcgcc caggtccttg atatgacggt caatgatgcg gtcgagttct tcaaacatat
    14701 tccgaaaatt gagcggaaac ttcgcaccat tcaagatgta ggcttgggct atgttaccct
    14761 tggacaacct gcgacaaccc tatcaggtgg ggaggcccag cggatgaaat tggcatcgga
    14821 acttcacaag cggtcgactg gtaagtccct ctatatcttg gatgagccaa cgacaggtct
    14881 acatactgag gatattgccc aattgctcaa ggtcttggcc cgctttgttg atgacggcaa
    14941 tactgtcctt gttatcgagc acaatctgga tgtcatcaag acagccgacc acattatcga
    15001 catgggacca gaaggcggtg tcggtggtgg taccgttgtt gcaacaggaa cgccagaaga
    15061 agtagctagc aacccagcca gctttacagg ccagtatctg aaaatgaagt tgaaataaaa
    15121 agccgcctct gcggcttttt ttctctatct gctaggaaga attggtattt gtctgtattt
    15181 ctgctataat agttacaaaa tctttggagg tagcttatgc aagcgcgtgt ggaaaaattt
    15241 gaggcaaaat tagcccaatc tgatgtggat ggaatcttgg tgactggtca aaacaatatt
    15301 tactacctga caggtttttg ggggacagag gcgactgtct tcatcagtgg caagcgtcgc
    15361 ttgtttgtga ctgattcgcg ttataccttg atagccaagg catcagtaaa aggttttgat
    15421 attatcgaga gccgttttgc ccttgaagag attgcaaagg tgattaagga agatgggctt
    15481 gaaaaaattg gttttgatag cgaggtgacc tatggtttct atcaaagtct gaccagcatt
    15541 tttgagggtt atcaactggt tgctatgtca aactttatcg aagacttgcg catgattaaa
    15601 gatgagaaag aaattgcgac cattcgccgt gcatgtcaaa tttcggatca ggcttttatt
    15661 gatgttcttg actttatcaa accaggtcag acgactgaga tggacgtcaa tcatttcctt
    15721 gaccaccgca tgcgtcaact cggtgcagaa ggggcatcat ttgagttcat cgtggcatct
    15781 ggctaccgct ctgctatgcc tcatggaaga gcgtctgaaa aggttatcca agctggtgag
    15841 accttgacgc tggattttgg ttgctattac cagcattatg tcagcgatat gacacggacc
    15901 atccatatcg gtcatgtgac agatcaagag cgtgagattt acgatgtggt cttgcgtgcc
    15961 aataaggctt tgattgagca ggccaaggaa ggtgtcacct accgcgagtt tgacgctatt
    16021 cctcgtgaga ttatcaatgc ggcgggttac ggagccaact ttacacacgg catcggtcac
    16081 ggtatcggct tggatattca tgaatatccg tattttggaa aatctgacga gactatcaag
    16141 gcaggtatgg tcttgacaga tgagcctggt atctatttgg atgacaaata tggtgtccgt
    16201 atcgaagatg acctattgat tacggaaaac ggttgtgaag tcttgacatt agctcccaag
    16261 gaattgattg tcatttgaga aatttgacag tttgtggtag aataaagcga ataaataaaa
    16321 tttgaagagg tattcaatac aatgattgaa gcaagtaaac ttagagcagg tatgaccttc
    16381 gaagctgaag gtaaattgat taaagttttg gatgcaagcc accacaaacc aggtaaagga
    16441 aacaccatca tgcgtatgaa attgcgtgat gtacgtacag gttcaacctt cgatacaact
    16501 tatcgtccag atgaaaaatt tgaacaagct attatcgaaa cagttccagc acagtacctt
    16561 taccaaatgg atgacactgc ttatttcatg aatactgaga cttacgatca gtatgaaatt
    16621 ccagtagcga ctatcaaaga agaattgctc tatatcttgg agaattccga tgtgaagatc
    16681 cagttctacg gaacagaagt gatcggtgtt actgtaccaa caactgttga attggtcgtt
    16741 gcagaaacac aaccatctat caaaggtgcg actgttacag gttcaggtaa accagctacg
    16801 atggaaacag gtcttgtagt caacgtacca gactttatcg aagcaggtca aaaactcgtt
    16861 atcaacacag ctgaaggaac ttacgtatca cgtgcttaat cgtttcctct taagaaagga
    16921 gagcctatga caacagaata tcaaggcgag attgttatcg cacctcgcgt ccttgaagta
    16981 attacaggta ttgctgcagc gaaagttgat ggagtgcatt cccttcaaaa taagcgtgta
    17041 gcagacagtt tgtcaaaaac atcgttaaat aaaggtgttt atcttgaaac tgacgaggaa
    17101 ggtcgagtga ctgcggatat ttacgtctat ctagaatatg gtgtaaatgt tcctgccgta
    17161 tcaatggaca tccaacgtgc agtcaagaca gcagtttata actatgcaga agttcaagtg
    17221 gctgcggtta atatccatgt cagcggcatt gttcctgata aaacaccaaa accagcattg
    17281 aaagatttat tcggagagga tttccttgat gaagaataat agacatgccc tgcgtaagtg
    17341 tgctttgcag gcaatcgtat cacttgaatt tggtcaagaa cctgttcagg cagctcagtt
    17401 ttcttatctt tatgatagag aggaagagca agaaggagtt gaaattccgc tctttctcct
    17461 taaccttgtc aatggtgtag cagactatcg tgatgacttg gataaggagt tatctagccg
    17521 attaaaagca ggatggacct tagaccgttt aaccttgatt gacaagaata tcatgcgact
    17581 aggcctattt gaaatcttac atttcgaaga aacgccagac cgcgttgctg ttaacgaggc
    17641 tattgaattg gctaaagaat tttctgatga atcttcagct aagtttgtca atggagtttt
    17701 gagccagttt attaaagaag aagcctgatg agcttctttt ttacttgaga aacaagagaa
    17761 tgtatcacaa aaaaactgca cctaattttt attaggtaca gtttttttat atactagctc
    17821 ctgctagtag gctaatcggt aggatatagt ctgtttttgt cagttttttt ccttcgattt
    17881 tatcaactaa tagttcaacc agcaggcgag ctatttcggt taatggttgc ttgatggttg
    17941 tcagttgagg atagtagttt tcgatgaaac tggttccatc ataaccaatc aatttaatat
    18001 cttctggaat agacagtttc attgaacgaa tgacgttcca taccagcata gccgttgcat
    18061 cgccagatac aaagatacca tctggttttt gcttttcaag aatggctcgg atttccatct
    18121 ccttgcgcac aggtgagaaa tcactggaga tatgaaaaac ttcggctttg ttcaaaatag
    18181 atgtgaaacc tacttggcga aggccggtag gtgaattgga atcatcgttc cccgtaatca
    18241 ttaatggatt gtgacatccc gctttttgta aggtttgggc agctaatacc ccgccagcaa
    18301 aattatcgga agagacaatg gggatggaag gagagaggtt gcggtcaaaa gcgataattg
    18361 gagctacgac acggtcgtag tcttggatac cgagattgtg actgcccgag ataatcccat
    18421 ctacttggtt agctgctaac atttctagat actcacgttc cttatcggac tcgtgctggc
    18481 tattgcaaat aatggtttta tagcctcgat caaaaagctc tttttctaaa tggctaatca
    18541 attcagaata aaaaatattg tttattgttg ggaagatgag accaactaat tttgcagatt
    18601 taccttgcaa actacgagct aaattattag gtttgtagcc cagttcacgc atagcctctt
    18661 cgacattgcg aatggttttt tcagataggt atcctttttt attgataacg cgcgagacag
    18721 ttgttgggct gaccccagct aactgtgcga catcagttag ttttgcgacc ataatctaaa
    18781 tggtagtagg ttccggtcgg attaccagtc gtaatgacga taccagactg atccgcatca
    18841 gggaagacac gaccagaaaa tactttctct cctttattga taaagatttc aaagacagat
    18901 ttgtcgatga agatattggc tgtgagagct cctggagaaa tctcgcaaga gcgacttgta
    18961 ccgaaatcga gtgcgaatgg ctgaccacag ttgccgcggt ccaatgtaat ctggccttgt
    19021 tcagtgtcca cagacaagac caagcctttt tctgcttcat ttgcgaacaa tacgatttcg
    19081 tgcttcgtgc ccgctgaaaa atcaagttcc aattcgtaaa cattattagt ttctttttgg
    19141 gctgaaaatg gctgagcttc tttacgaaga ctggtgatcg catcaactgg atactggtag
    19201 agcttaccgt ccttgatggt taattcttta accaatgaca gacagccttg gtagtcataa
    19261 gcatcggttg ggtattccac atctggaagt gccaaccagc taacagatag agttcgaccg
    19321 tctggtgcat taaaggcctg ggttgcatag cactcaaaac catagtccag attgatcaat
    19381 tcgctcggtt cgacaatgct tgctgtttca ggatcgaaac tctgaccaat cttgtacata
    19441 tttggataga tattgctata gtccaatacc tctttgtcca agccttgtgg acagtagaga
    19501 aggatgggtt gctcaccgac gaacgcaata tttgggcatt ccatcatata agcggtcata
    19561 tcattggcaa aatcaaggtc accaacatag gaccagttga ggtagtcgtt attttcagct
    19621 ttataaagtt tgacaattcc ctttttatcc agattttgtc caccgacaat agcgtaatat
    19681 tgccctttat agttgaaaat ttgtggatca cggaaatggt ccgtggtatc ttctggttgc
    19741 tcaatcaaga ctttatcaat cttttcaatc ttaccatctt tatccatcaa ggcaccgatt
    19801 tggtatggat ggcgaaccca attttcatcg cggacatttc cagtatagaa gaggaagagc
    19861 ttgtcgccaa attccatggc agatccagag taggcaccgt ggctatcaag tggtgtatct
    19921 gggtacataa ccgtaccagt tttttcaaaa tggaccaaat ccgttgattc tgtatggacc
    19981 caagatttta atccgtgcgc agcaccgaat gggaagtatt ggtaaaaaag agtccacttt
    20041 ccattaaaat aagaaaatcc atttggatca tttaacagtc catgtggtgt ttcaatatgg
    20101 aaatttgtcc tccaaggaga attctctgta ttcttcttta ttttttcaat atattcgggt
    20161 gtccagtcag cataagctct gtaacgctcc tctgtcgtaa atgccataat tttctccaaa
    20221 ttttctagtt t
//
LOCUS       DASGCC010000024        19866 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.024, whole genome shotgun sequence.
ACCESSION   DASGCC010000024 DASGCC010000000
VERSION     DASGCC010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19866
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.024"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(178..2355)
                     /locus_tag="U1404_000601"
     CDS             complement(178..2355)
                     /locus_tag="U1404_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910563.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5347579.1"
                     /translation="MNSKIFSLRKSKMGLVSVAIAFLWIGTGMNMETAMAEETDATAL
                     ETQLESKESSLTNTVSENAEAEEVTDEVPSEEKKSEEMEDMEEELPFIENHLEVAPIQ
                     AGDQTISGNTTPGGYVAITIDGEAITSIENILEADDKGDFSYRLSKPLAHSQTVEISA
                     LPKQFWTLEADSEERKVVVRTNRHPEAYEIPAKRLEKTSNGMHQVFIEPVFEHTSKVI
                     GHTSVKGSVYLSINGSFVSDKTLIDPKDGRFEVTFSESLAGSKFKADDRLVLSFVSED
                     GQPVITNTIVKPLVKEKVSSQMTVKPLSSATSVLEGTTFPLGRVHLYNADTSEFIMEA
                     IADETGHYKIALPALQSEDKYYRLTHNQQEDLVSVHLDTVDGSSILLDKSVMASLATY
                     LQDADMDEATDEDPIIVPKLHNKKDYIVGRTIHLNAYVRMVSSIKGKQYPPVQVDELG
                     FFGFQIQDLQLPFEKGERIRFEIIDPVTNNIIASKEEVVGQYLEDEDVMDLPFQVEKV
                     TTDHGYISGKTAPDVMIELVSTQNGEEIIGKTSTDSTGRFEFDLGSRVLKNGETLSFR
                     AFDKEGEQVAWEVVTVQKGNGHRINKPDKKDEKEEQPSKEITKNIEQSDTLEQTTLPP
                     VRQTLTDKKVEQNAEPSKEETVSIFDDSKKDMPTKQEKMARTVRDKGTKGNVSVHDSG
                     ENTQVQSLPKTGEKTSLVANIMLSIILFLFALFIGKKKITESE"
     gene            complement(2957..3892)
                     /locus_tag="U1404_000602"
     CDS             complement(2957..3892)
                     /locus_tag="U1404_000602"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HEM5347580.1"
                     /translation="MSKFLVFGHQNPDTDAIASSYGWAHLEREVFGRDAEAVALGTPN
                     EETAFALDYFGVTAPRVVESAKAEGVSQVILTDHNEFQQSIADIKEVEVAAVIDHHRV
                     ANFETANPLYMRLEPVGSASSIVYRAFKENGVTPPKEVAGLLLSGLISDTLLLKSPTT
                     HTTDPQVAAELAEIAGVNLEEYGLTLLKAGTNLASKSAEELIDIDAKTFGLNGNDVRV
                     AQVNTVDIAEVLERQAEIEATMTAASAANGYSDFVLMITDIVNSNSEILALGSNMDKV
                     EAAFNFKLENNHAFLAGAVSRKKQVVPQLTDAFNA"
     gene            4030..5727
                     /locus_tag="U1404_000603"
     CDS             4030..5727
                     /locus_tag="U1404_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEM5347581.1"
                     /translation="MKFSDYTYVRPDYETIKAQFSDLTDQLAQASDLETTRTLVAAVT
                     KLLNLVDTQYNLWMIRHTIDMNDEFYNEETKFWNEYSPLFEELTTNYYRVIVQTPYKA
                     ELADILPETFFMQAENKLKTFSSDVIPLFQKENELTDEYSKLIAGAEIDFQGQTYNLA
                     QMGPFGQSTDREVRKAASAATTAFFESKEADFDRVYDELVKVRTEIAHKLGFKDYVEY
                     GYLKMNRFDYNRDMVKVYREEILKHIVPIVQNLRQRQAKRLQVPSLKHYDLNLEFLDG
                     NAVPQGDPDFIVSQAKDMYRELSAETGEFFDFMIEHELLDLVAKPGKNSGGYCTYIPD
                     FKSPFIFSNFNGTSGDIDVLTHEAGHAFQVYRSRWIQSPEVVWPTYETCEIHSMSMEF
                     MTWPWMDRFFKEQVDKYKFTHLASALLFLPYGVLVDHFQHEVYEHPEMTPAERKATWK
                     KLQDLYLPDRDYSESEALNRGIFWYRQGHIFASPFYYIDYTLAQVCALQFWKRTQVDH
                     DENAWEDYIRICDLGGTKSFLQVVEAANLQSPFKEGALESTAKAAADWLNAVKDSDL"
     gene            complement(5836..6627)
                     /gene="pflA"
                     /locus_tag="U1404_000604"
     CDS             complement(5836..6627)
                     /gene="pflA"
                     /locus_tag="U1404_000604"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HEM5347582.1"
                     /translation="MMTEIDYRKVTGLVHSTESFGSVDGPGVRFVVFMQGCHMRCQYC
                     HNPDTWDLVNPAATERTAEDVLNEALRFRMFWGKEGGITVSGGEATIQIDFLIALFTL
                     AKEKGIHTTLDTCALTFRKTERYLEKYSRLMEVTDLVLLDIKEMNPEQHRIVTGHSNK
                     TILECAQYLSDIGKPVWIRHVLVPNLTDRDEDLIELGKFVKTLKNVERFEVLPYHNLG
                     EFKWRELGRPYPLEGTKPPTKARVENAKALMETETYQEYLNRIKG"
     gene            complement(6748..8085)
                     /locus_tag="U1404_000605"
     CDS             complement(6748..8085)
                     /locus_tag="U1404_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM5347583.1"
                     /translation="MEDPGSQTIYLQLLILFLLTLFNAFFSASEMALVSLNRSRVEQK
                     AADGERKYIRLLQVLENPNNFLSTIQVGITFISILSGASLANDLGAVFAKWMGNSTTA
                     QTAGYWLALAMLTFVSIVLGELYPKRIAMNMKENLAVVTAPVIIFLGKIVSPFVWLLS
                     AATNLISRITPMNFDDADEQMTRDEIEYILTKSEKTLDAEEIEMLQGVFSLDELMARE
                     VMVPRTDAFMVDIEDDTATIMAAILKQNFSRIPVYDGDKDNIIGLIHTKKILSEAFSN
                     GFDNLNIRRIMQEPLFVPETIFVDDLLTSLRNTQNQMAILLDEYGGVAGLVTLEDLLE
                     EIVGEIDDETDKTEIFVREIADNTYIVQGNMTLNDFNEHFEMELESDNVDTIAGYYLT
                     GVGTIPSQDEKVSFEVDSKDHHLVLINDKVKNGRVTKLKLLITPLEKEETDKD"
     gene            8218..8997
                     /locus_tag="U1404_000606"
     CDS             8218..8997
                     /locus_tag="U1404_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347584.1"
                     /translation="MIISMKNVHYKRQGKTMLEDINWEFKKGERWAILGLNGAGKSTL
                     LRILMAEFWKTSGDLTVLGVEFGKGDIPSLRTKIGVVGSFLAERFPIDLTAEQIVLTG
                     KYKSSILYREYGQAELDEAIDMLKTIKAEHLIGRAYASLSQGERQLLLIARSLMEEPA
                     ILILDEATVGLDLLARERLLHHIDYLCQLPTAPAIIYVTHHAEEITDNFTHVLLLKDG
                     MVLAQGPKEDILTPELLSDFYGNQVELIDLGEGRLFIKPIL"
     gene            complement(9013..9567)
                     /locus_tag="U1404_000607"
     CDS             complement(9013..9567)
                     /locus_tag="U1404_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5347585.1"
                     /translation="MLRPLHMAHAFLDEILTDQDLAVDATMGNGHDTLFLAQRAGKVV
                     AFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQYVDECKAAIFNLGYLPSADKSV
                     ITLPATTLQAIEKVLNRLVVGGRLAIMIYYGHEGGALEKDAVLDFISQLDQTVFTAML
                     YKPLNQVNTPPFLVMVERLKSSSN"
     gene            9698..10342
                     /locus_tag="U1404_000608"
     CDS             9698..10342
                     /locus_tag="U1404_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEM5347586.1"
                     /translation="MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLK
                     AWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAGLVVLLCHFQVLNLTETILILAG
                     LVLTIYDIKHQEYPFAVWLIFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
                     YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI"
     gene            10450..11910
                     /locus_tag="U1404_000609"
     CDS             10450..11910
                     /locus_tag="U1404_000609"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEM5347587.1"
                     /translation="MTLFKDDSLTLHTDLYQINMMQVYFDQNIHNKHAVFEVYFRSQP
                     FKNGYAVFAGLERVVNYLNNLSFSQTDIDYLTELGYPQDFLDYLSQLEMTLTVRSAKE
                     GDLVYANEPILQIEGPLAQCQLIETALLNIVNYQTLIATKARRIKAVIEDEPLMEFGT
                     RRAQEMDAAIWGTRAAFIGGASATSNVRAGKIFGIPVAGTHAHALVQTYGDDYKAFKA
                     YAETHHNCVFLVDTYDTLRIGVPAAIKVAKEMGDKINFKGVRIDSGDMAYISKKVRQQ
                     LDDAGFTDAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVS
                     IEDEDGNMRDTIKLSSNAEKVSTPGKKQVWRITSKEKGKSEGDYITFADTDVTQMDNI
                     YMFHPTYTYINKTIENFDARPLLVPIFEKGKQVYELPSLAEIQTYANQEFDKLWDEYK
                     RVLNPQLYPVDLAQDVWDNKMNLINRIRKQTQTKSI"
     gene            11923..12747
                     /gene="nadE"
                     /locus_tag="U1404_000610"
     CDS             11923..12747
                     /gene="nadE"
                     /locus_tag="U1404_000610"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HEM5347588.1"
                     /translation="MTLQETIIKELGVKPSIDPKEEIRRSIDFLKDYLKKHPFLKTYV
                     LGISGGQDSTLAGRLAQLTMEEMRAETGDDSYQFIAIRLPYGVQADESDAQAALAFIQ
                     PDVSLTINIKESTDAMVAAVNANGLAMSDFNKGNAKARMRMIAQYAIAGERKGAVIGT
                     DHAAENITGFFTKHGDGGADILPLFRLNKRQGKQLLAALGADEKLYLKVPTADLEEDK
                     PGLADEVALGVTYNQIDDYLEGKTIDPQSQTIIEGWWNKTAHKRHLPITIFDDFWK"
     gene            complement(13621..14148)
                     /locus_tag="U1404_000611"
     CDS             complement(13621..14148)
                     /locus_tag="U1404_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5347589.1"
                     /translation="MRKFFQADGNLTMLGRQICKTLAGAYALAIVLLCFLPQTWYPQY
                     KDFSTPGIIQIGRLYLLPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLL
                     FLREEWRSLRAVIRYSFCISLFIECTQLLLDLLIDAQRVFEIDDLWTNTMGGILAYFT
                     YSLIMRGIILSKQES"
     gene            complement(14145..15257)
                     /gene="rlmN"
                     /locus_tag="U1404_000612"
     CDS             complement(14145..15257)
                     /gene="rlmN"
                     /locus_tag="U1404_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEM5347590.1"
                     /translation="MKPSIYAFSQANLVDWILENGEKKFRATQIWEWLYRSRVQSFAE
                     MTNLPKSLIEKLEEHFVVNPLKQRIVQESKDGTIKYLFELPDGMLIETVLMHQHYGLS
                     VCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDERNQNERVSHIVVM
                     GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFACEGVQVNLAVS
                     LHAPNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNRRVTFEYIMLNEVNDGVEQAQE
                     LADLTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGT
                     DIDAACGQLRSNTLKKDREKARARIAAAKAKAGIRA"
     gene            complement(15266..15907)
                     /locus_tag="U1404_000613"
     CDS             complement(15266..15907)
                     /locus_tag="U1404_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1027 domain-containing protein"
                     /protein_id="HEM5347591.1"
                     /translation="MKKEISPEMYNYNKYPGPSFARVGDKVVSENIELDLLEDYKNAF
                     DQTIFGQRFSQLMLKFDYIVGDWGNEQLRLRGFYTDDKNVKSDLKISRLDDYLTEYCN
                     FGCAYFVLANPNPQDLPAEEEDRPRRKRSRSRNRNRNQQRTELIEPKENKSNRNDRQK
                     KGKQQNKQSEQRHFTMKNAGVKASQTERSQKHERKQSKREMNEVKRNFVIRQK"
     gene            complement(16095..17144)
                     /locus_tag="U1404_000614"
     CDS             complement(16095..17144)
                     /locus_tag="U1404_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEM5347592.1"
                     /translation="MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQV
                     LTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDPYTTVRSSEEMTGGADNEEYFRI
                     ARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
                     TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEV
                     QSSVPIDFQTGDIGGPSAGLMFTLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGG
                     ADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEAAEKAGLDIEVVPVK
                     TVQEAIDYLKKTKGE"
     gene            complement(17131..17619)
                     /gene="coaD"
                     /locus_tag="U1404_000615"
     CDS             complement(17131..17619)
                     /gene="coaD"
                     /locus_tag="U1404_000615"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEM5347593.1"
                     /translation="MSDKIGLFTGSFDPITNGHLDLIERASGLFDKLYVGVFTNPKKA
                     GLLTGLERKAILEKLFVGMENIEVVLSENELVVDVAKRYGVTHLVRGLRNATDLEYES
                     SFDFYNRQLAPDLETIYLIAKPELKFVSSSQVRELLYFKQDIGPYVPEIVSEEIRKNE
                     EK"
     gene            complement(17609..18148)
                     /gene="rsmD"
                     /locus_tag="U1404_000616"
     CDS             complement(17609..18148)
                     /gene="rsmD"
                     /locus_tag="U1404_000616"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEM5347594.1"
                     /translation="MRIVSGSYGGRPLKTLDGKTTRPTSDKVRGAMFNMIGPYFEGGR
                     VLDLYAGSGGLSIEAISRGMESAVLVERDRRAQAIIRENIAMTKEADKFQLLAMEARQ
                     ALNSVGGPFDLVFLDPPYAEQEIEDVITELCRRDLLADDVMVVCETDKAVSLPEEIAE
                     LGIWKEKLYGISKVTVYVR"
     gene            complement(18447..19169)
                     /locus_tag="U1404_000617"
     CDS             complement(18447..19169)
                     /locus_tag="U1404_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM5347595.1"
                     /translation="MEKKFEKLSLAEIGIISFMGLILLISLGASWYKNAQSETSDTKT
                     VQQVPNQKKTVDTLFQDAENAVIVLEGTHTEEKLAEAQSAVNKVTDATKKAALQKRID
                     QVKELVGQQTDAQTQAKLKAELVRAEAAQKVADEKKVSETGTSQSTDLAEASETSQES
                     YVVPNQNIYGNQSVSSTSQYTSSVASTSTSASVPPTSEGAPVVETPTVSETPAETTDS
                     TTSLVESVETVPTADESSPDNP"
     gene            complement(19226..19612)
                     /locus_tag="U1404_000618"
     CDS             complement(19226..19612)
                     /locus_tag="U1404_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM5347596.1"
                     /translation="METFWVFLVFLAVLGAWMGFNYWRLRRAATVIDNAEFAEKIHGG
                     QLIDLRDPSEFNRKHILGARNIPYQQLRQSTAALRKDRPVLIYENDRGQLVTPAALHL
                     KKQGFNEIYILSYGLNGWNGKVKTTK"
     gene            complement(19612..19830)
                     /locus_tag="U1404_000619"
     CDS             complement(19612..19830)
                     /locus_tag="U1404_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HEM5347597.1"
                     /translation="MKRLYDVQQLLKRFGIIVYMGNRLYDIEMMQIELNRIYQAGVLD
                     RLEYMEAELVLRREHRLELEYQKSRENE"
BASE COUNT         5738 a         4601 c         3589 g         5938 t
ORIGIN      
        1 ctgttatcac acacatttat acaagtgata aatattgcaa tgagtcttca aactctactt
       61 tcacctctat aagcaaataa ttcattgaaa gaaaaatttt aactctttta atttaaagct
      121 acacaatgcc tctcatctgt cgcaaacgaa tttttgagag agctttgtca tcgcctttta
      181 ctcactttct gttatctttt tcttgccaat gaataaagca aataagaata atatgatcga
      241 taacattata ttggcaacca agctcgtttt ttcaccggtc ttaggcaggc tttgaacttg
      301 ggtattctca ccactatcat gcacagatac gtttcctttt gtccctttgt ctcttacagt
      361 acgagccatt ttctcttgct tagtaggcat atcttttttc gaatcatcaa aaatagaaac
      421 cgtttcttct tttgatggct ctgcattttg ctctactttt ttgtcagtca gcgtttggcg
      481 tacaggtggc aaagtagttt gctcaagtgt gtctgattgt tcgatatttt tggtaatttc
      541 tttgctaggt tgctcttcct tctcgtcctt tttatctggt ttattaatgc ggtgaccatt
      601 tcctttttga accgttacga cttcccaagc tacctgttca ccttctttat caaacgctct
      661 aaacgataag gtttctccat tttttaaaac acgactaccc aaatcaaatt cgaatcgacc
      721 tgttgaatca gttgaagttt taccaattat ctcctcgcca ttctgagttg atactagttc
      781 aatcattaca tctggagctg ttttgccact gatgtaacca tgatctgtag tgactttttc
      841 tacttgaaat ggtaaatcca tcacgtcttc atcttccaaa tattgcccta caacttcttc
      901 cttactagcg atgatattat ttgtaaccgg gtcaatgatt tcaaagcgaa ttctctcacc
      961 tttttcaaaa ggcaattgta aatcttgaat ttggaaacca aaaaatccta attcgtccac
     1021 ttgaactgga ggatactgtt ttcctttgat tgacgaaacc atgcgaacgt aggcattaag
     1081 atgtatcgtt cgaccgacaa tataatcttt tttattatgc agtttaggta caatgatagg
     1141 atcttcatct gtcgcttcat ccatatctgc atcttgtaaa taagttgcta aagatgccat
     1201 aacagattta tccaataata tacttgaacc atcaactgta tcaagatgga cagataccaa
     1261 gtcctcttgt tgattgtgag tcaatctgta gtacttatcc tcggattgta gggcaggcaa
     1321 agcaatctta tagtgacctg tctcatcagc aatagcttcc atgataaact ctgaagtatc
     1381 agcattgtat agatgcacac gacctaaagg aaatgtagtt ccttccaaaa ctgaagtcgc
     1441 acttgataaa ggttttactg tcatttgtga agatactttt tcttttacca atggttttac
     1501 aatagtatta gtaatcaccg gctgaccatc ttctgataca aaagacaaaa ccaatctatc
     1561 atctgcttta aattttgaac ctgctaaact ctcggaaaaa gtaacctcaa accgtccatc
     1621 tttaggatca attagtgtct tatcagagac aaaactacca tttattgata gatagactga
     1681 acctttgaca gaggtatgac caataacttt gctcgtatgt tcaaaaactg gttcgatgaa
     1741 cacttgatgc attccattag atgttttttc taatcttttt gctggaattt cataagcctc
     1801 tggatgtcga ttagtcctca ctactacctt acgctcttca gaatctgcct ctagagtcca
     1861 aaactgtttc ggcaaagcac taatttccac agtttggctg tgagcaagtg gtttactcaa
     1921 ccgataagaa aaatctccct tatcatctgc ttccaaaata ttctcaatag aagtaattgc
     1981 ttccccatct atcgtaatcg ctacatatcc accaggagtg gtattccctg agatggtttg
     2041 atctccagct tgaatcggag caacctctag atggttttca ataaatggaa gttcttcctc
     2101 catatcctcc atctcttccg attttttttc ttcactcggt acctcatcag tcacttcctc
     2161 agcttcagca ttttccgaaa ctgtattggt aagcgatgat tccttgcttt ctaattgagt
     2221 ttcaagagct gtagcgtcag tctcctcagc cattgcggtt tccatattca tccctgtacc
     2281 aatccataga aaagcaattg ccaccgaaac taaacccatc ttactttttc tcaacgaaaa
     2341 aatcttgcta ttcatctttt ctccttatat ctgtattaat aattaacgac acatattgtc
     2401 ctagttttat tataaaaaaa acatctcata gaacattgtt tttcattagt tttttatctg
     2461 ttttacagtt gcctgtaata tatagtatgc tacatttcgc aaaaactttg ctggttctca
     2521 tcgtcattta gtttttcttt tattacttct gtaatcaatt tgaattgaca gaacgattag
     2581 aagcacttta cttgtaaaca aaatttctaa attatggcac attcaaagta aaaaactagc
     2641 gcctgaagtt ttctatgata cagatacttg tttatctcgg agtgctcctt taattcgtca
     2701 acttatactc aatgaaaatc aaaatcaaac taggcgacgc agatacagat agaactgaag
     2761 ttcatcaaat caagttaaca acgtctgatt ttcgaagagt attaaataag agtgggttta
     2821 tttgtcatga tgccacttgt ttattttgtt aactatcact tcataaaaca tgattgtcct
     2881 cataataaaa agcacccgaa ggtgctagat aaggccttcc taccgacttc acgttcgagg
     2941 tcggtagaaa acttcattag gcgttgaaag catctgtcaa ttgtggcacc acttgtttct
     3001 tacgggaaac ggcacctgca aggaaagcgt ggttgttttc caacttgaag ttgaaggccg
     3061 cttccacctt gtccatgttg cttcctaggg caaggatttc agagtttgag ttgacgatgt
     3121 ccgtaatcat gaggacaaag tcagagtagc catttgctgc ggaagctgct gtcatagtgg
     3181 cttcaatctc tgcttggcgt tccaaaactt ccgcaatatc aacagtgttg acctgagcta
     3241 cacggacgtc attgccattc aaaccaaatg ttttggcatc aatgtcaatc aattcttctg
     3301 ctgacttgct ggcaaggttt gtaccagctt tcaagagtgt caaaccgtat tcttccaagt
     3361 tcacaccagc aatttcagcc aattcagctg ctacttgtgg atctgttgta tgagtggttg
     3421 gcgatttgag caagagagta tctgaaatca aacctgatag gagaagtcca gctacttctt
     3481 ttggaggtgt tactccgttt tctttaaagg cccggtaaac gattgatgat gctgaaccta
     3541 ctggttccaa acgcatgtac aatggatttg ccgtttcaaa gtttgcgaca cggtggtggt
     3601 caataacagc tgccacttcc acttccttga tgtctgcgat tgattgttgg aattcattgt
     3661 ggtctgtcaa gatgacttgg ctaacgcctt ctgcttttgc agactcaacc acgcgcggtg
     3721 cagtaacacc aaaatagtca agcgcaaacg ctgtttcttc atttggcgtt ccaagtgcaa
     3781 ctgcttccgc atcacgacca aacacttcac gctccaagtg agcccagccg tacgatgatg
     3841 caatggcatc tgtatcagga ttttggtgac caaaaactaa aaatttagac atgtctacaa
     3901 cctcattttt ctaataatct cctacatttt accataaata gaaagacttg tgaacatgga
     3961 cgggtcggga tttgccaaac gttttcaaaa agagtaagat agaaggtagc aatacaaaag
     4021 gagaaacata tgaaattttc agactatacc tatgtccgtc cagattatga aactatcaag
     4081 gctcaatttt ctgacctgac agaccagttg gctcaggcaa gtgacttgga aacaactcgc
     4141 acacttgtgg cagccgttac caaattgctc aacttggttg atacccagta caacctctgg
     4201 atgatccgtc atactatcga catgaacgat gagttctaca atgaagaaac caagttttgg
     4261 aatgaatatt cgccactttt tgaagaattg accaccaact actaccgtgt cattgtccag
     4321 acaccttaca aggctgagct tgcagacatt ttaccagaaa ccttcttcat gcaggctgag
     4381 aacaagctca agaccttctc atctgatgtt atccccttgt tccaaaagga aaatgaattg
     4441 accgatgagt acagcaaact gattgctgga gcagagattg atttccaagg tcagacctac
     4501 aacctggcac aaatgggacc attcggtcaa tcaactgacc gcgaggtccg caaggctgct
     4561 tctgctgcca caactgcctt ctttgaaagc aaggaagctg actttgaccg tgtttacgat
     4621 gaattagtca aggtccgcac ggaaatcgcc cacaaactcg gcttcaagga ctatgtagaa
     4681 tacggctacc tcaagatgaa ccgtttcgac tacaatcgcg acatggtcaa ggtgtaccgt
     4741 gaggaaatcc tcaagcatat cgtaccgatt gtgcaaaatc tgcgtcaacg ccaagccaaa
     4801 cgcttgcaag taccaagcct caaacactac gacctcaacc ttgagttctt ggacggaaac
     4861 gcagttcctc aaggtgaccc tgactttatc gtcagccaag ccaaagacat gtaccgcgaa
     4921 ttgtccgcag aaacaggcga gttcttcgac ttcatgattg agcatgaact cttggatttg
     4981 gttgcaaaac caggcaaaaa cagcggtggc tactgtacct atatccctga cttcaagagc
     5041 ccattcatct tctccaactt caacggaacc agcggagata ttgatgtttt gacccacgaa
     5101 gcaggtcacg ccttccaagt ctatcgttcg cgttggattc aaagtccaga agttgtctgg
     5161 ccaacctatg aaacctgtga aatccactct atgtctatgg aatttatgac ctggccatgg
     5221 atggaccgtt tcttcaagga acaggtggat aagtacaagt ttacccactt ggcaagtgcc
     5281 cttctcttct tgccttacgg tgtcttggtg gatcacttcc agcacgaagt ctatgaacat
     5341 ccagagatga caccagctga acgcaaggcg acttggaaaa aactccaaga cctctacttg
     5401 ccagaccgtg attattctga gtcagaagcc ctcaaccgcg gcatcttctg gtatcgtcaa
     5461 ggtcatatct ttgctagtcc attctactac atcgactata ccttggctca agtttgtgcc
     5521 cttcaattct ggaaacgtac acaggtagat cacgatgaaa atgcttggga agactatatc
     5581 cgcatctgtg atttgggcgg caccaagtcc ttcttgcaag tggttgaagc cgcaaacctc
     5641 caatcaccgt tcaaagaagg tgcccttgaa agcacagcca aggctgctgc cgattggtta
     5701 aatgcagtta aggatagcga cttataaaac acaaaaatct gaatgaatca aatgactcat
     5761 tcagattttt tgattatatg atacttgtcc ctaacacatt aaatcttttt cgcagcaatc
     5821 tcagacctct cactattatc ccttaattct attcaagtac tcctgatagg tctctgtctc
     5881 catcaaggcc tttgcatttt ccactcgagc cttcgttggg ggcttggtcc cctctagtgg
     5941 atagggtctg cccaactcac gccacttaaa ttcaccaaga ttgtgataag gtaacacctc
     6001 aaaacgttcg acatttttta atgttttaac aaacttacca agttcaatca agtcctcatc
     6061 tcggtcagtc aaattcggca ccaggacatg acgaatccaa acaggcttac caatgtctga
     6121 tagatattga gcacattcta aaatagtctt gttactatga cctgtcacaa tgcggtgttg
     6181 ctcaggattc atttccttaa tatcaaggag caccaaatct gttacttcca taagccgact
     6241 atatttttcc aagtaacgct ctgtcttacg gaaagtcaac gcacaggtat ccaaagtagt
     6301 gtgaatccct ttttcttttg caagggtaaa cagagcaatt aaaaaatcaa tctggatggt
     6361 tgcttcacca cctgaaacgg taataccccc ttcttttccc caaaacatac gaaaacgcag
     6421 agcttcattc aagacatctt ctgccgttct ctcagtcgct gctggattga ccagatccca
     6481 agtatctggg ttatggcaat actggcaacg catgtgacag ccctgcataa aaactacaaa
     6541 acgtacccct gggccatcaa ccgaaccaaa actctctgtt gaatgaacca aacctgtcac
     6601 tttacgataa tcaatttctg tcatcatctc atcctcatca ttttataaga ctagtatatc
     6661 acaaaaatga aaacgcttct atcatttact ttctttcttt cataaccatc atcttccgca
     6721 agaaaaaagc taaaagacta ggttgcccta gtccttatcg gtttcttctt tctccagtgg
     6781 tgtaatcaag agttttaatt ttgttacgcg accatttttt accttatcgt taataagaac
     6841 taggtggtga tctttactat ctacttcaaa ggaaactttc tcgtcttggc tcggaatggt
     6901 accgactcct gtcagataat aaccagcaat cgtatcaacg ttatcacttt ccaactccat
     6961 ctcaaaatgc tcattgaagt cattcaaggt catatttcct tggacgatat aggtgttgtc
     7021 agcaatttct cgaacaaaaa tttctgtctt atcggtctca tcatcgattt ccccaacaat
     7081 ttcttccagc aaatcttcca aggtaacgag acctgcaact ccaccatact catctaacaa
     7141 gatggccatt tgattttggg tatttctcaa tgatgtcaac aaatcatcca cgaaaatcgt
     7201 ttctggaacg aagagaggct cctgcataat gcggcggatg ttgagattgt caaagccatt
     7261 actgaaagct tctgacaaga ttttcttggt atgaatcaga ccaatgatat tgtccttatc
     7321 gccatcataa acagggatac gtgaaaaatt ctgcttgagg atagctgcca tgatggttgc
     7381 tgtatcatcc tcaatatcca ccatgaaagc atccgtacgg ggaaccatta cttcacgtgc
     7441 catcagctca tctaaagaga acacaccttg aagcatttcg atttcttcgg catctaaggt
     7501 tttctcactc tttgtcaaaa tatattcaat ttcatcccgt gtcatttgct catccgcatc
     7561 atcaaaattc ataggagtaa tacggctgat aagattcgtt gcagctgata ataaccacac
     7621 gaacggacta acaatttttc caaggaaaat aatcactggt gcagtgacta ctgccagatt
     7681 ttccttcata ttcatggcaa tccgcttagg gtacaattcg ccaagaacga ttgaaacgaa
     7741 ggtcaacata gctagtgcaa gccagtatcc tgcggtttgc gctgttgttg aattccccat
     7801 ccatttggca aatacagctc ccaaatcatt agccaagctg gcacctgaaa ggatggagat
     7861 gaaggtaata ccgacctgaa tggttgatag aaaattgtta ggattctcta aaacttgaag
     7921 caagcgaata tatttcctct caccgtctgc agccttttgt tctactcgag aacgattgag
     7981 ggatacaagg gccatttctg aggctgaaaa gaaggcattg aacagagtca ataagaataa
     8041 aattaacagt tgtaaataga tggtctgact accagggtct tccatgatgt tctcctataa
     8101 taaaatttat aacatttcca ttataccaca aattctaaaa tttaacatat ttcttgctat
     8161 aattagtccc tcatgtctgt ttatgttaca ataatcaaaa ggaataggag agcaactatg
     8221 attatttcga tgaagaatgt ccactataaa cgacaaggta aaactatgtt agaagacatc
     8281 aactgggaat ttaaaaaagg cgagcgttgg gctattttag gactcaacgg ggctggaaag
     8341 tcaactctac ttcgcatttt aatggctgaa ttttggaaga cctctggtga cctgactgtt
     8401 cttggagtgg agtttggtaa gggagatatt cccagcctac gcaccaagat tggggtagtt
     8461 ggctcctttt tggcagagcg ttttccaatc gatttgacgg ctgagcagat tgtcttgaca
     8521 ggaaaatata aatcctccat cctctatcgt gaatacggtc aagctgaatt ggatgaagcc
     8581 atagacatgc tcaaaaccat taaggctgag cacttgatcg gtcgggccta tgctagtttg
     8641 tcacaaggag aacgccaact cctgctgatt gcccgaagtt tgatggaaga gccggctatt
     8701 ttgattttag acgaagcaac tgtcggtttg gacctcctag ctcgcgagcg cctgctccac
     8761 cacattgact acctctgtca actcccaacg gctcctgcca ttatctacgt cacccatcac
     8821 gccgaggaaa tcactgataa tttcacccat gtcctcctgc tcaaagatgg catggtcttg
     8881 gcacagggac ccaaagaaga tatcctgaca cctgaactcc tcagcgattt ttatggaaat
     8941 caggtggaat tgattgactt gggtgaggga agattgttca ttaagccgat attataaaaa
     9001 acaaatccag ctctagttcg agctggattt taatcgttcc accatgacca aaaatggtgg
     9061 ggtattaact tggttgagcg gtttgtagag catggctgta aagacggttt ggtcaagctg
     9121 gctgataaag tctaaaactg catccttctc aagagctcca ccctcgtgac catagtaaat
     9181 catgatagcc aagcgacctc caaccaccaa tctattcagg actttctcaa tggcttgaag
     9241 ggtggttgca ggcagggtaa tgactgactt gtccgccgaa ggtagatagc ccagattgaa
     9301 aatcgctgcc ttgcattcat ccacatactg gtctaaattt tcgtgtcctg tcaaaaccaa
     9361 ttgggcattg gttaagccag ctttttctag tttttcagcc gttgtggtca gggcttgttc
     9421 ctgaatatca aaggccacaa cttttcctgc tcgttgggct aaaaatagcg tgtcatggcc
     9481 atttcccata gtcgcatcga ccgctaggtc ctggtcagtt aaaatctcat ctaaaaaggc
     9541 atgggccatg tgtaaaggtc taagcatact ttctcctaat tactgtactt tctactattt
     9601 tgtaaaattt atcacaccta gtatagcata ctttccatct tcaaaaaatt ttttaaaatc
     9661 tactcatatt cctccatcca tttacgaata aataggtatg aagacaatta tcctattttt
     9721 ccttggagct tctatcggct ccttcttggg attggtcatc gaccgtttcc ctgaacagtc
     9781 cattatcgcc ccctctagtc actgcaatgc ctgcaaacga cggctcaagg catgggactt
     9841 aattccagtc ctatcccagc tttcgacaaa atccaaatgc cgttactgca aggcgaagat
     9901 accttattgg tatctgggac tagaattctt agctggtcta gttgtcctgc tctgccattt
     9961 tcaagtccta aacctaaccg aaaccattct catcttggca ggactagttt tgaccattta
    10021 cgacatcaaa catcaggaat atccttttgc tgtctggctc atttttactt ttattgctct
    10081 gatactctcc cagctcaact ggctcttctg tggcttttta ctcttggcct atctgactga
    10141 aaaatggcaa atcaatattg gttctggtga ctttctctat ctggcaagtt tggccttaat
    10201 atgtggattt acagaactcc tctggattat ccagattagt tccctcctag ggcttcttgt
    10261 cttcgccatt ttcaaaccca agtctattcc ctacgtacca ctcctttttc tttcaagtat
    10321 tcctatcatt ctgtgcatct aaatcgagtt tttctcgatt tttttgttat aatagaaggc
    10381 atattagagt tcaactccat caaaataatt ggagtgcctt cttgatcgga aggcaaaagg
    10441 agaaacgtta tgacactatt taaggatgac agtttaaccc tgcataccga cctttatcaa
    10501 atcaacatga tgcaggtcta ttttgaccaa aacatccaca ataaacacgc tgtattcgaa
    10561 gtctatttcc gttcacaacc ttttaaaaat ggctacgctg tatttgccgg tttggaacgc
    10621 gttgtaaact acctcaacaa tctcagcttt agccagacag acattgacta tctgacagaa
    10681 ctaggttatc cgcaggattt ccttgattac ttgtcccaat tggaaatgac tctcactgtc
    10741 cgttcggcta aggagggcga cctagtctac gctaacgaac ctattcttca aatcgaagga
    10801 ccattggcac aatgccaact aatcgaaact gccctcttaa acatcgtcaa ctaccaaacc
    10861 ctgattgcca caaaagctcg ccgtatcaag gctgtcattg aagatgagcc cttgatggaa
    10921 tttggcactc gccgtgccca agaaatggat gctgctatct gggggactcg agcagccttt
    10981 attggtggag catctgcgac ttccaatgtt cgagctggca aaatcttcgg catccctgtc
    11041 gctggtaccc atgcccacgc cttggttcaa acatacggag atgattacaa ggctttcaaa
    11101 gcctacgctg aaacccatca taactgtgtc ttcctcgttg atacctatga tacgcttcgt
    11161 attggtgttc cagcagccat caaggttgcc aaagaaatgg gagataagat taacttcaaa
    11221 ggggttcgga ttgattcagg cgatatggcc tatatttcca agaaagttcg tcagcaatta
    11281 gatgatgcag gttttacaga tgcgaagatt tacgcatcta atgacctgga tgaaaatacc
    11341 atcctcaacc tcaaaatgca aaaggcaaaa attgatgtct ggggagttgg taccaaactc
    11401 atcaccgcct acgaccaacc agctctgggc gctgtctaca agattgtatc catcgaagat
    11461 gaagatggaa atatgcgtga caccatcaag ctgtcttcta atgcggaaaa agtctccact
    11521 cctggtaaga aacaggtttg gcgcatcacc tccaaagaaa aaggaaaatc agaaggggac
    11581 tacatcacct ttgcggacac tgacgtcaca cagatggata atatctatat gttccatcca
    11641 acttacacct atatcaataa aaccatcgag aactttgatg cccgtcctct cctagttcct
    11701 attttcgaaa aaggaaaaca ggtctatgaa cttccaagcc tagcggaaat tcaaacctat
    11761 gccaatcaag aatttgataa actctgggat gaatacaaac gcgtgctcaa cccacagctc
    11821 tatccagtcg acttggcaca agatgtttgg gataataaga tgaacctcat caatcgtatt
    11881 cgcaaacaaa ctcagaccaa atccatctaa gaaaggtatg ttatgaccct acaggaaaca
    11941 atcatcaaag aattaggcgt caagccaagc attgacccca aagaagaaat ccgtcgctcc
    12001 atcgactttc tcaaagacta tctgaaaaaa cacccatttt tgaaaaccta cgtcttgggg
    12061 atttctggtg gacaagattc gaccttggct ggtcgtttgg cccagctgac tatggaagaa
    12121 atgcgggcgg aaacaggtga cgattcttat caatttatcg ctatccgcct gccttacggt
    12181 gtgcaagctg atgagtctga cgcccaagca gccctagcct ttattcaacc agatgtcagc
    12241 ttaaccatca acatcaagga atcaacagat gccatggtgg ctgcagtcaa tgcaaatggg
    12301 cttgctatgt ctgattttaa taagggaaat gctaaagccc gcatgcgcat gattgcccaa
    12361 tacgctatcg ctggagaacg caagggggct gttattggaa ccgatcatgc cgctgaaaat
    12421 atcactggtt tctttaccaa gcacggtgat ggaggtgcag atatcctgcc cctcttccgt
    12481 cttaacaagc gtcaaggtaa gcaacttcta gctgctttgg gagcagatga aaaactctac
    12541 ctcaaagttc ctactgcaga cttggaagaa gacaaaccag gccttgctga cgaagtcgca
    12601 cttggtgtta cctataacca aatcgacgac tatctcgaag gtaaaaccat cgaccctcaa
    12661 tcccaaacca ttatcgaagg atggtggaac aaaacagccc ataaacgcca cctgccaatt
    12721 actatttttg atgatttttg gaaataatac tcctcgaaaa tcaaaatcag acgttattga
    12781 cttgatttga tgactgaaaa gctcctgtgg aggttttcag cctgttccct tgaaatataa
    12841 aaggaacaga gttctaacat caacttgaag gcgcaaacaa tgttcgctat atttccaacc
    12901 ttcaactatc tcccagatag ttgaagctag gctacttttg attttcatcg aataataaaa
    12961 aatggagccc tgacagttga accgtcaggg gttttgtttt ttattataac ttcaaaccat
    13021 aatgaaaaaa gcccacgcag gaaaaaatat cctgcgtggg cgtcaatgga cacggtgcca
    13081 cctcactatg gactcgacta gaaaagtcca taactttttc tcctctaaca aggaggcgca
    13141 cgataagggg tgcggaccga actctcattg tttcgaattc atcgaaccaa actcacttta
    13201 ctaaaccaga caatccataa aatggatacg aatgcttgtt tggcatcagc ctatctcata
    13261 aacctctatc atctattcac accaaccata gactctctaa agacaaagtg tttattacat
    13321 tttctgatta cttgtaatta tacgttacaa aatcaaaatg gtcaagtgat ttttagaaat
    13381 tttctaaaca atttgaaaat tcagtttcca ttgcctgaat ccattaaaaa ctaacaaaaa
    13441 gccactctgc ttaagtgact ttctaaaaaa ctgtattcac gagcgaagca ctcatatcaa
    13501 agatagcttt agctagtcaa ggtcattttt aagggaatac tgactgtatt tcaaaaaaat
    13561 aacaatgtgt agcataaaca atagccttag atggacattc tgaacctgtg acggtaggtt
    13621 ctaagactcc tgtttggaaa ggattatccc tctcattatc aatgaatagg taaaataggc
    13681 tagtattccc cccattgtat tggtccataa atcatcgatt tcaaagacgc gttgggcatc
    13741 aatcagcaaa tctagtagta attgtgtgca ttcaataaaa agactgatac aaaaactata
    13801 acgaatcacc gctcgaaggc tccgccattc ttccctaaga aacaaaagaa gaaaaatcag
    13861 agggaaaagt agaaaaatat tagtgatgtt ttgcaagaaa atccacccta ggtccgccaa
    13921 actatctacc ttgtccccgt tgacgatgct gttgaaagga gttggtaaaa gatagagacg
    13981 gccaatttga ataattcccg gggtcgagaa atccttatac tgtgggtacc aagtctgagg
    14041 tagaaaacaa agtaaaacaa tagccagagc ataggctcca gctaaggtct tacaaatctg
    14101 tcttcctagc atggtcaagt ttccatctgc ttggaagaat tttctcatgc tcgaatacct
    14161 gcctttgctt ttgcggctgc aatacgagca cgagcttttt cacggtcttt cttgagcgta
    14221 ttggaacgca attgaccaca ggcagcatca atatctgtac catgttcctg acgaacgaca
    14281 cagttaacac catttttctt caaaacatca aagaaagcaa gagtacgttc cttggttgaa
    14341 cgactgtact ggtcatgttc actaactggg ttataaggaa tcaagttgat ataagacaat
    14401 ttacgaatgt tcttggtcaa atcagctagt tcctgcgcct gttccactcc atcgttgacc
    14461 tcattgagca taatatactc aaaagtcaca cggcggttgg tcactttgat atagtcttcg
    14521 attgcttcaa aaagaacttc tatagggaat ttgcggttaa tgcgcataat gctcgaacga
    14581 aggtcattat ttggcgcatg tagagatact gccaagttaa cttggacacc ttcacatgca
    14641 aactcacgaa ttttcggtgc taaacctgac gtagaaacag tgatgtgacg ggcaccaatt
    14701 gccaagccct tgtcgtcatt aaccactcgc aagaaggtca taacattatc gtagttatca
    14761 agcggctcac caatccccat cacaacgata tggctaacac gctcattctg attgcgctca
    14821 tccaagtact tttgtaccaa cataatctga gccacaatct caccgctagt caagtcacgt
    14881 tgcttaggaa tcaatccaga tgcacagaat gtacagccga tattacagcc aacttgtgtc
    14941 gttacacaga ctgaaaggcc atagtgctgg tgcatgagaa ctgtttcaat caacatgcca
    15001 tctggcagtt caaaaaggta tttgatagta ccgtccttag actcctgtac aatccgttgt
    15061 ttgagcggat taactacaaa atgttcttcc aacttttcaa tcaaagattt tggcaagttg
    15121 gtcatttccg caaaagattg gacacgagaa cggtaaagcc attcccaaat ttgagtggca
    15181 cggaacttct tctctccgtt ttctaaaatc caatcaacca gattggcttg actaaatgca
    15241 taaattgatg gtttcatatt tctccctatt tctggcggat aacaaagtta cgcttcactt
    15301 cattcatctc acgcttactc tgcttacgct catgtttttg agaacgctcc gtttgactcg
    15361 ccttaacacc agcattcttc atagtaaaat gacgctgttc cgactgttta ttttgctgct
    15421 tccctttttt ctgacggtca ttgcgattac ttttgttttc ttttggctca ataagctccg
    15481 tccgttgctg atttctgttc cgattgcgag aacgactccg cttccgacgc ggtctatcct
    15541 cctcctcagc aggcaagtct tgtggattcg gattggctaa gacgaaataa gcacaaccaa
    15601 aattacaata ctccgtcaaa tagtcgtcca agcggctgat ttttaagtct gatttaacat
    15661 ttttatcgtc tgtatagaat ccccttaatc tcagctgctc attgccccaa tctcccacga
    15721 tataatcaaa tttgagcatg agttgtgaaa aacgttgacc aaaaatcgtc tggtcaaaag
    15781 cattcttgta atcttccaaa aggtccaatt caatattttc agatacaacc ttatctccga
    15841 cacgagcaaa actcggacca gggtatttat tatagttata catttcaggt gaaatttctt
    15901 ttttcatttg tcctcctatc ttataaaatc ttcatacgta aaaatcattt gattaataat
    15961 ctatctggtc agaatctaaa ttctcacact taaccttatc attataacac gatttatctg
    16021 gaaattcttc tactttacca tttaggagaa atttctgaca attataatat tattctctag
    16081 caaaaaagga cgatttactc gcccttcgtt ttcttcaaat aatcaatagc ctcttgaaca
    16141 gttttcacag gaactacctc aatatctaga cctgctttct cggctgcttc cttagcttct
    16201 tcatagttcg ttttagcctt tgggtttttc ttcaaaactt ctacatcaac tggattgttt
    16261 ggtacaaaaa aaatacttgc acctgactta gctgccgaaa taaccttctt atcagcccca
    16321 ccaatgtcac ctacttttcc atcctgctcg atagtccccg taccagcaat aattcgacca
    16381 tcacgtaagt caggctctgc gagttgagta tagatggcaa gtgtaaacat cagaccagca
    16441 cttggaccac caatatctcc cgtttggaaa tcaattggaa ccgaactttg aacctctgta
    16501 tggtctacga gagtgatgcc tattccgttt ttgccattag ataatttgat aatcttaccg
    16561 tccgcagatt tttcctgacc agcgctaata taaccaactg ttacatcact tccaacctcc
    16621 aagccactca catatttaat caaatcagga gaagactcaa atgtttttcc attgatactc
    16681 acaacagtgt cggcaatatt aagaactttt ttaaaggttg aatcatccgt caaggcaagc
    16741 acatagacac caaagaaatc aagattgact tcttttcctg ccaaggtcaa tccttgatac
    16801 ttcgccatat tttgcgaagt ttccatgtaa aaccgtgcta tacggaaata ctcctcattg
    16861 tcggcccctc ctgtcatctc ttcagaggaa cgaactgtcg tatagggatc aaactgagca
    16921 gcgaatagtt gtaaagctgt agcttgttgg actgatacat aggtgaagtt gtaagagcca
    16981 tcctcttggt ctatttgatt gttcaccgtt agtacctgac gaatatcggc agctccacct
    17041 ggactttcca gataataagg cagacgaaca aaaacggcaa accaaatcaa aagagttcct
    17101 aaaacaatag atgcaattaa ggttaacttc ctatttttct tcattctttc taatctcctc
    17161 actaacaatt tctggaacat aaggacctat gtcctgtttg aaatacagca attctcgaac
    17221 ctggctggat gatacgaact taagctctgg cttggcgatt aaataaatag tttccaaatc
    17281 tggcgccaac tgacgattgt aaaaatcaaa acttgactcg tattccaaat cggtcgcatt
    17341 acgcaatcct cggaccaaat gtgttactcc atagcgctta gctacatcga ctaccaattc
    17401 attttcagac agaacgacct cgatattctc cattcctaca aaaagcttct ccaaaatggc
    17461 ttttctctcc aaacctgtca agagtcctgc ctttttagga ttggtaaaaa ctcccacata
    17521 taatttatca aatagtccac tcgctcgttc aattaagtcc aagtgtccat tggtaatggg
    17581 gtcaaatgag cccgtaaaca atccaatctt atctgacata tactgttacc ttactaattc
    17641 cgtagagttt ctctttccat atccccagct ctgctatttc ctccggaaga gagaccgcct
    17701 tatccgtttc gcagactacc ataacatcat ctgctagtaa gtcacgccga caaagttctg
    17761 ttatcacatc ttcaatttcc tgctctgcat aaggagggtc caagaatacc aggtcgaaag
    17821 gacctcccac actgttcaaa gcctgtctag cttccattgc tagaagctga aatttatctg
    17881 cttccttagt cattgcaata ttttcacgga taatggcttg tgctcgtcga tctcgctcaa
    17941 ccagaactgc tgactccatg ccacgagata tagcctcgat agataaacca ccactgccgg
    18001 cgtacaagtc aagaactcta ccaccctcaa aatagggacc aatcatattg aacatggctc
    18061 cacggacctt atccgatgtc ggtctggttg tttttccatc taacgttttc agtggtcttc
    18121 caccatagct tcccgataca attctcataa ggtatattat agcaaaaaat gaagctcgtt
    18181 gctgaaacca agtgcacttc ctgctttcct ttttgcacca actttttcat cctcctatca
    18241 aatacactct caaccgctat agcaggaaat cattctcaca ttattcaata aaatgataaa
    18301 aataaaaagc aaggaaattc tgttttacgc gaaattcctc actcttatcg tatgtattta
    18361 aactagatcg ttacaagaaa aaattgatgt tgaaatacaa atagctattt tttccagtat
    18421 gctaatacac cccgtagcta aaaagcctac ggattatccg gcgaactctc gtcagctgtt
    18481 ggaactgttt ccactgactc aaccaggcta gttgttgaat ccgtcgtttc cgccggggtt
    18541 tcagaaactg ttggagtttc taccacaggt gctccttcac tagtcggagg gactgaagca
    18601 cttgtactag ttgacgccac gctgcttgta tactggcttg ttgaactcac actttgattt
    18661 ccatatatat tttgattagg cactacatag gattcttgtg aggtctcact agcttcagca
    18721 aggtccgttg actgactagt ccctgtttca gatacttttt tctcatcagc tactttttgg
    18781 gctgcttccg ccctgaccaa ctccgctttt agcttagcct gtgtttgagc atctgtctgc
    18841 tgtcccacta gctcttttac ttggtcaatc cgtttctgta atgctgcttt tttagtcgca
    18901 tccgtaacct tgtttactgc agattgtgcc tctgcaagtt tctcttcagt atgtgttcct
    18961 tctaatacaa tgacagcatt ctcagcatcc tgaaataatg tatcaaccgt ttttttctga
    19021 ttgggcactt gctgtactgt ctttgtatca cttgtttcgc tttgagcatt tttataccag
    19081 ctagcgccta agctaatcaa taaaataagt cccataaaag aaataatgcc aatttctgcc
    19141 aatgacaact tttcaaattt cttttccata ttttttccct tatccgtctc attgcataag
    19201 aaaatactct agcctactga caatgctact tagttgtttt taccttacca ttccatccgt
    19261 ttagaccata gcttaaaata tagatttcgt taaagccctg tttcttcaga tgaagagctg
    19321 caggcgttac caactgacca cgatcattct catagattaa gacaggtctg tccttacgca
    19381 aagcagctgt agactggcgc aattgctggt aaggaatatt tctcgcacct aagatatgct
    19441 tacgattaaa ctcactcggg tctcgcaggt caatcaactg acctccgtgt atcttttctg
    19501 caaattctgc attatcaatc acagtcgctg cacgacgcaa tctccagtaa ttaaaaccca
    19561 tccaggctcc caatactgcc aaaaatacta aaaataccca aaatgtttcc atcactcatt
    19621 ctcccttgat ttctgatact ctaattccaa acgatgttca cgcctcaaaa caagctctgc
    19681 ttccatatat tccaaccgat ctaagacacc tgcctgatag attctattta attctatctg
    19741 catcatttca atatcgtaga gacggttgcc catatagaca attataccaa accgtttgag
    19801 taattgttgc acatcataaa gtcttttcat aaaaaaattg tagcagaatt ttaggtgttt
    19861 ttcaat
//
LOCUS       DASGCC010000025        19634 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.025, whole genome shotgun sequence.
ACCESSION   DASGCC010000025 DASGCC010000000
VERSION     DASGCC010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19634
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.025"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            38..382
                     /locus_tag="U1404_000620"
     CDS             38..382
                     /locus_tag="U1404_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347598.1"
                     /translation="MKQANSKLAALTLITTLAVTSVIGTTVHAEEKVTADQTVAGKHK
                     PITDEQLQKAIGDRNPNNIKIQAKFENTNFKNQGITFIGKAEIPSKSSENSSWFWNLW
                     TRFTTFVKGIFS"
     gene            854..979
                     /gene="dltX"
                     /locus_tag="U1404_000621"
     CDS             854..979
                     /gene="dltX"
                     /locus_tag="U1404_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HEM5347599.1"
                     /translation="MQHPVVRFICRTLFYFFILLLLLYLYSYLDIGQGGFIYNEF"
     gene            996..2531
                     /gene="dltA"
                     /locus_tag="U1404_000622"
     CDS             996..2531
                     /gene="dltA"
                     /locus_tag="U1404_000622"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HEM5347600.1"
                     /translation="MISSMLERVEHFATENPDYPVYHYLGQLYSYGDLKADSDSLAAH
                     IDSLDLPANSPVLVFGGQEYQMLAIFVALTKAGHPYIPVDSHSALDRIEAILEIAEPS
                     LVFAVADFPLETSLPVLGLSEVEAIFEKKSTYQLMHPVSGDDTYYIIFTSGTTGKPKG
                     VQISHDNLLSFTNWMIRDKEFALPERPQMLAQPSYSFDLSVMYWAPTLALGGTLFALP
                     KELTLDFKTLFAAIQTLPFKIWTSTPSFVDMALLSREFDGEHLPDLTHFYFDGEELTV
                     KTAQKLRERFPKAVIVNAYGPTEATVALSAVAITDEMLVNYKRLPIGYAKPDSPTFIL
                     DEDGQVVPNGQQGEIVVSGPAVSKGYLNNPERTEAAFFQFDGLQAYHTGDLGVMTDEG
                     LLLYGGRMDFQIKYNGYRIELEEVAQHLNKSTYIEAAVAVPRYNADHKVQNLLAYVVP
                     KAGIMEQFDRELELTKVIKQELKERMMDYMMPSKFIYRDSLPLTANGKIDIKGLIAEV
                     NAQ"
     gene            2528..3769
                     /gene="dltB"
                     /locus_tag="U1404_000623"
     CDS             2528..3769
                     /gene="dltB"
                     /locus_tag="U1404_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HEM5347601.1"
                     /translation="MMEFFKQLPQLEPYGNPLYFFYLVLALVPIFIGIFFKKRFPLYE
                     TGVSLAFIVLMFTGTKTMQLLSLLAYIIWQTMLIFFYKHYRQRANQSWVFYLIVCLAV
                     FPLTWVKLAPTFSQHGAIFGFLGISYLTFRSVGMVIEMRDGLLTEFSLGSFLRFLLFM
                     PTISSGPIDRYRRFTEDYKQIPERTELLNMLDQTMHYIMMGFLYKFILAYFIGHTLLE
                     PLKAVALDQGGWFNLPTIGVMYLYGFELFFDFAGYSMFAIGISNLMGIRCPINFDQPF
                     KSRDLKEFWNRWHISLSFWFRDFVFMRLVKTLLKHKVFKNRNTVSNVAYLLNMLLMGL
                     WHGVTWYYIAYGLFHALGLIINDAWIRKKKSINLARKKAGQEPLPDNRWTSFAGMFVT
                     FHTVMFSFLIFSGFLDKLWFK"
     gene            3812..4051
                     /gene="dltC"
                     /locus_tag="U1404_000624"
     CDS             3812..4051
                     /gene="dltC"
                     /locus_tag="U1404_000624"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HEM5347602.1"
                     /translation="MDVKETILNIIEELFMEDVSEMMDEDLFDAGVLDSMGTVELIVE
                     LESRFNITVPVSEFGREDWNTANKIISGVVELMHA"
     gene            4044..5309
                     /gene="dltD"
                     /locus_tag="U1404_000625"
     CDS             4044..5309
                     /gene="dltD"
                     /locus_tag="U1404_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HEM5347603.1"
                     /translation="MRKQLWQIFGPVICATFLVILTLLFFPSSSRSNFKEEKQDAVAL
                     SYISFKSKYKKNRALGDKNHRFVPFFGSSEWSRFDSMHPSVLADAYQREYTPYLLGQR
                     GAASLTQYFGMQQIGAHLKNSQAIYVVSPQWFSPKGASSKAFEQYFSSDQATHFLQTS
                     AGDDYDRYAAKRFLELKSDCSLTGMFQKVASGKELSKWDREQLTWQAYLLEKQDALFS
                     RFADSGSNLGLVETEAMKLPETFSYDRLSKVANEDGSRSTQSNDFQIDDRFYRNRLQS
                     KIKKLKQSQTKISYLQSPEYNDFQLVLNEFAKHQTDVLFVIPPVNERWMNYTGLNKDM
                     YRATVAKIKYQLTSQGFNHIADLSEQGGIDYFMQDTIHIGWQGWLELDKYIHPFLAEQ
                     QAPVHYQLKKEFLTSEWATYKGDLNLFLK"
     gene            complement(5398..6513)
                     /locus_tag="U1404_000626"
     CDS             complement(5398..6513)
                     /locus_tag="U1404_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEM5347604.1"
                     /translation="MSEIIAKRVSNYELFYDLVFVLATSSLTGLLHENPIGFKEVTTF
                     ITANLIIITLWMNETIYLNKYGERDFLDIFTIIPSMYLIGNMSLNFSNDFAQTALPFN
                     TFLTLSYVIILLQYYLRGRRIDFNEDIKATLQMLATNIVVFAGVTLLVVFKLWTNDER
                     MLIVYIIPFLISFFFQKRMSHDPINFPHMVERCQLITIITFGETVIVILKNYPILELP
                     LEGILLFFAMASLFIFYISQTYLTIDHHRKADATVLLYAHLVIVLGLNFFTVAMELFP
                     SHHNDLALPMLIVGNLLFYSGILSTSFYNQQVHQVGRRGLFIYALILLIGNVALLLDG
                     HSNILLFVILNLLSHAMIAYHVIRFRKANHSLLGEGM"
     gene            complement(6973..7935)
                     /locus_tag="U1404_000627"
     CDS             complement(6973..7935)
                     /locus_tag="U1404_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEM5347605.1"
                     /translation="MGLLQDGKWVDQWYDTKSTGGKFVRTVTQFRNWITPDGQAGPTG
                     RGGFKAESGRYHLYISLACPWASRTLIMRKLKGLEDHISLSIVHPLMLENGWTFADGP
                     GVIKDSLFNSNYLYQVYLKTDPNYTGRVTVPVLWDKETNTIVSNESAEIMRMFNSAFN
                     DITGNYDDYYPANLQAEIDAMNDFIYPNINNGVYKAGFSTSQAVYEKEVKNLFAALDK
                     LEEHLADKNYLVGNQLTEADIRFFTTLVRFDPVYFGHFKCNIKALVDYPNLWDYTKRI
                     YNHSGIAETVDFDHIKQHYYGSHKTINPTGIVPVGPDLDWTLEN"
     gene            8074..8790
                     /locus_tag="U1404_000628"
     CDS             8074..8790
                     /locus_tag="U1404_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5347606.1"
                     /translation="MRLDKCLEKAKVGSRKQVKKLFKAQQIKINGHAAQSLSQIVDPE
                     LQTIQVSGKKVALEGSAYYLLHKPAGVVSAVTDQEHQTVIDLISPQDSREGLYPVGRL
                     DRDTEGLVLITNNGPLGYRMLHPSHHVDKVYYVEVNGCLAEDASKFFASGVTFLDGTR
                     CQPADLTVLEASLDHSRATIKLAEGKFHQVKKMFLAYGVKVTYLKRISFGGFELGDLE
                     RGAYRQLTPNEMEHLFTYFD"
     gene            8804..9283
                     /locus_tag="U1404_000629"
     CDS             8804..9283
                     /locus_tag="U1404_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEM5347607.1"
                     /translation="MSIYDFTVQKQDGTDQSMAEYQGQVLLIVNTAPGCGLAPQYKEL
                     QELYDSYRGQGFVVLDFPCNQFLNQAPGSAEDINQTCSLNYGTTFPRFAKIAVNGSEA
                     SPLYRYLKKEKSTLLGGRIEWNFTKFLVDRQGRVVKRYLPTTSPLKLKEDIELYLEK"
     gene            complement(9302..10303)
                     /locus_tag="U1404_000630"
     CDS             complement(9302..10303)
                     /locus_tag="U1404_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM5347608.1"
                     /translation="MIRHHNYLKIFTFLLILLFVIFLLSLSIGYSNSSFSDLIDIMSG
                     RASSSTLLIIGRIRLPRIIASIIGGASLALAGLLLQTLTRNPLADSGILGINAGAGLV
                     VALFVGLSSKISPVLLSLMPLFAMMGGGLTIFLVYWIARKKLYGIHPARLIITGVGIS
                     SMLSGIMVSIISQLDDFKMEYIVQWLSGRVNGGDWKTIAIYTPLLLLVWMATFSRSRS
                     LNIMNLNDQTAMALGLHLQRERRITLVLATALASLSVILVGNITFVGLIAGHIVRKWL
                     GNDHRVIIPATMIIGSFILLLADTIGRVLLVGTGIPTGIIVSLIGAPYFLWLLKQEG"
     gene            complement(10300..11325)
                     /locus_tag="U1404_000631"
     CDS             complement(10300..11325)
                     /locus_tag="U1404_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM5347609.1"
                     /translation="MNKLVSSRYPKTKPKNIWLVFFIICLSFIAGVYLSLRFGAISYS
                     HQQLMETLTHPLTDSSAQDVIIDLRLPRMVAAILVGAAMAQAGAMMQGITRNPIADPG
                     LLGINAGAGLALIVAYALFGGLHYSQILLICLLGSCLAAGLVFGLAYQVQKGYNQLRL
                     ILSGAMVASLFSAIGQAITIYFDLSTAVIGWQAGGLVQVNWKMLAIIAPLIIIGLILA
                     QLFSHQLTILSLNETVAKNLGQRTLLMTLVLLGIVLLLSASAVALVGSLSFIGLIIPH
                     FIRIFTGKNYKLLLPLTAFAGASFLIWVDLVCRSINPPVETPISAVISIIGLPCFLWL
                     IRKEKHF"
     gene            complement(11339..12268)
                     /locus_tag="U1404_000632"
     CDS             complement(11339..12268)
                     /locus_tag="U1404_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5347610.1"
                     /translation="MKKFLAIFSLFVGLVFLTACSTSSSSTDVELSSMPKIEGITYHG
                     DIPKNPKKVVNFAYSYTGYLLQLGIDVSSYSLDLEKNSPVFGDKLKDVPQLTTADTEA
                     IATQKPDVILVFSGDDNLETLKEIAPVIEITYGKSDYLKMLTDIGQVFGKEKEAQAWL
                     DQWDKKVATAKEELKGLIDTSSTFTVMDFFDKNIFLYGNNFGRGGELIYRALGFAAPA
                     KVQEDIINKEGWFGVSQEALPEYVGDYVLVNVNDKTKEAAASLKESDIWKNLPAVKNG
                     HVIEIDYNLFYFSDPMSLDLQIDAFVSEIQKLQ"
     gene            complement(12281..13066)
                     /locus_tag="U1404_000633"
     CDS             complement(12281..13066)
                     /locus_tag="U1404_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019774490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347611.1"
                     /translation="MSSIQAENIQVSYDNRIIIDELSTSIPKGSITTIIGANGCGKST
                     LLKALTRIIPVQEGAIYLDGQAISQLPTKEVAKKLALLPQVLEATEGISVYELVSYGR
                     FPHQNGLGHLTDQDREKINWALEVTQTAPYARLPVDDLSGGQRQRVWIAMALAQDTDT
                     IFLDEPTTYLDLNHQLEVLELLKELNQSRQKTIVMVLHDVNLSARFSDYMIAMKEGDI
                     RYHGSVSNMMTTEILRDIFSIEPQLMQVAGQDYPILLTYDLKK"
     gene            complement(13218..14663)
                     /locus_tag="U1404_000634"
     CDS             complement(13218..14663)
                     /locus_tag="U1404_000634"
                     /EC_number="6.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019792455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-
                     lysine ligase"
                     /protein_id="HEM5347612.1"
                     /translation="MITIERVLEILKADANFRHIKQNGQTDSTWTDVQFDALSYDSRT
                     VSPTTLFFAKGLAFKKEFLEKAIEVGLAFYVSEIDYEVGIPAIIVHDIKQAMSLIAME
                     FHGHPQKQLKLVAFTGTKGKTTAAYFAFNILKINHKPAMLSTMNTTLDGKTFFKSTLT
                     TPESLDLFAMMAEAVKNGMSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIE
                     HPTFEDYFYHKRLLMDNSRAVIVNAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSAG
                     FDFTATGKLAGHYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQTNVPGRMEV
                     LTQQNGAKVFVDYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLN
                     DYPQIEVILTADDPNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTSSPKDAV
                     IIAGKGADAYQIVNGEKAAYDGDLEVAKQYL"
     gene            14810..15556
                     /locus_tag="U1404_000635"
     CDS             14810..15556
                     /locus_tag="U1404_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEM5347613.1"
                     /translation="MFYSYLRTLLTFLLWAINGNIHYHDREKILPQEENYILIAPHKT
                     FWDPVLLGYAAAPKQFIFMAKKELFKDRGFGWWISKCGAFPIDRDNPGMAAIKYPVNM
                     LKKSDRSLVMFPSGSRHSSELKGGVAVIAKSAKVKLMPATYVGPMTIKGLLAGERIDV
                     AFGNPIDVSDIKRMDDAGTAEVTSRIEAEFKRLDDHAASFQTKKKPNILTYIYRIPVL
                     LLVALILGLTYAFSYIASFFWQPSTQLDKK"
     gene            15623..16285
                     /locus_tag="U1404_000636"
     CDS             15623..16285
                     /locus_tag="U1404_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5347614.1"
                     /translation="MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTG
                     LTDFPQTAQTSSSSDLVEETSTEASEEPSQLVVDVKGAVVKPGLYTLEADARVNDAVE
                     AAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSSEEKSTSQVN
                     LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVT
                     VE"
     gene            16269..18506
                     /locus_tag="U1404_000637"
     CDS             16269..18506
                     /locus_tag="U1404_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEM5347615.1"
                     /translation="MSRLSKLPCQPVHLAVLAVAAYFAVHSFSLLTMGLLSLLLLVFG
                     FRQGKAVFIKTLPLLALCGLFFGYQKVQWERADQLAPEQVTTMQVIPDTIEVNGDSLS
                     FRGRADGQTYQVFYKLTSQEEQTYFQKLTGLVQLEVEAEISLPAGQRNFKGFDYQAYL
                     KTQGIYRTVKITAIKKIVPVQSWNVFDWLSNWRRQALVYVKTNFPAPMSHYMTGLLFG
                     ELDSEFDQMSDLYSSLGIIHLFALSGMQVGFVIDKFRWILLRLGLTKETVDKLQIPFS
                     LVYASLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLILPRFLLTAGGVLTFT
                     YAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFAFSFVFDV
                     LLLPGLSVIFLLSPIVKITWVNGFFVFMEKIIVWVADLGLRPWILGKPSELVLLLLLV
                     SLFLLYDFHRRKKWLLGLSLVLALLFFITKHPLENEVTVVDIGQGDSIFLRDMRGRTV
                     LIDVGGRVDFAAKEAWQERSRQANAERTLIPYLHSRGVDRIDSLVLTHTDTDHVGDVL
                     EVAKQVQIGRIYVSPGSLTVPDFVATLKEINVPVHVVEVGERLPIFDSYLEVLYPDGT
                     GDGGNNDSIVLYGRLLKTNFLFTGDLEQGELDLIESYPNLPVDVLKAGHHGSKGSSYP
                     EFLDHIEAKIALVSAGENNRYKHPHQETLERFDSRNIQVYRTDQQGAIRFRGWREWRI
                     ETVRR"
     gene            18508..18651
                     /locus_tag="U1404_000638"
     CDS             18508..18651
                     /locus_tag="U1404_000638"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347616.1"
                     /translation="MINPMHLWFYSFKVYVLAALSGYILHYVTTPASVNDFKEVAALL
                     ERC"
     gene            18830..19486
                     /locus_tag="U1404_000639"
     CDS             18830..19486
                     /locus_tag="U1404_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM5347617.1"
                     /translation="MSVKDFMTRKVVYISPDTTIAHAADIMREQDLHRLPVIENDKLV
                     GLVTEGTIAEASPSKATSLSIYEMNYLLNKTKVKDVMIKNVITVSGYASLEDAAYLMY
                     KNKVGILPVVDNGQLYGVITDRDIFAAFLHVSGYGEEGVRARFLVENKAGELEKIIRL
                     VADKDYNIVSTVQLATKSGKVVIEVQIDGKVDVEEVRTLFEGAGIQVDSLVPTVAKNI
                     "
BASE COUNT         5627 a         3751 c         4436 g         5820 t
ORIGIN      
        1 attaaaaaaa ataatacttt gtaaaaggag acatttcatg aaacaagcta attcaaaact
       61 agcagcttta acactcatta caactcttgc agttacctct gttattggga caacggtgca
      121 tgctgaggag aaagtaactg ctgatcagac tgtagcagga aaacacaaac cgattacgga
      181 tgagcagctt caaaaagcga ttggagatag aaatccaaat aatattaaga tacaagctaa
      241 atttgaaaat accaatttca aaaatcaagg aataactttt attggaaaag ctgaaattcc
      301 atctaaatct tctgaaaact cttcatggtt ttggaatctt tggactcgtt ttacaacttt
      361 tgtcaaaggt atttttagct aagatttcta tttttcgttg acttcatatg gatagagaac
      421 agtggttcat gtgagccttt agtcaaatga aaagcgtata aaatattgga gagatctagg
      481 catctaaact agagattgtg caagaaatta tgtaatagac ctcacatttt ttgcgaatga
      541 gatgttgaca cgaattccat atttcttgag tctcggttgt aatttttctt agataaatta
      601 aagagtgaaa agtttaggat gtaattgttc taaacttttt atattgcatc gataaaaaac
      661 acagtctttg tgtaacaggt atattcttgt attttttagt gaaaaaagaa ataaattgac
      721 aaaattatgg taaaatatag gttgatttaa aattaatcat ctaatgaatg gaatgagttc
      781 gaagtaagtc aagattgact agacattgta tttaaagcaa ttcgcaggaa taagagatgg
      841 aaggagatag aacatgcaac atccagttgt acgatttatc tgtagaaccc tgttctattt
      901 ttttatattg ttactacttt tgtatctgta tagttattta gacattggac agggaggatt
      961 tatctataat gagttttaaa gaggagagta taaaaatgat tagcagtatg ttagagcggg
     1021 tagagcattt tgcgacagaa aatcctgact accctgttta ccattatcta ggacagttgt
     1081 atagttatgg ggatttaaag gcagattcag attctttagc agcccatatt gatagtttgg
     1141 atttaccagc aaactctcct gtccttgttt ttggcggaca ggagtaccag atgttggcaa
     1201 tctttgttgc cttaaccaag gctggccatc cgtatatccc tgtagatagt cattctgctt
     1261 tggatcggat tgaagctatt ctggaaatag cagagccgag tttggtgttt gcggtagcag
     1321 actttccgct agagacaagt ttgccagtgc ttggtttgtc tgaagttgaa gccatttttg
     1381 agaagaagtc gacttatcag ttgatgcatc ctgtaagtgg agatgatacc tactatatta
     1441 tcttcacttc tgggacaacg ggtaaaccaa aaggggtgca aatttcgcat gacaatttgc
     1501 tcagcttcac taactggatg ataagggata aggagtttgc gctaccagag cgaccgcaaa
     1561 tgttggctca accttcctat tcgtttgact tgtcggttat gtattgggct ccgacgcttg
     1621 cccttggtgg gaccttattt gccctaccga aagagttgac tttggatttt aagaccttat
     1681 ttgcagctat tcaaactttg ccatttaaga tttggacttc gacaccatca tttgtagata
     1741 tggctttgct atctcgtgag tttgatgggg aacatttacc agatttgacg catttctatt
     1801 ttgacggaga ggagttaact gtaaaaacag ctcagaagct ccgcgaacgt tttccaaaag
     1861 ctgtgattgt taacgcttat ggaccgaccg aagctacagt cgccttatca gcagttgcca
     1921 tcactgatga gatgctggtg aattataaac gtttgccgat tggctatgcc aaaccagact
     1981 cgccaacttt tattttggat gaggatggtc aagtagtacc gaatggtcaa cagggagaaa
     2041 ttgttgtatc aggtcctgct gtctctaaag gatatttgaa taatcctgag agaaccgagg
     2101 cggcattttt ccagtttgac ggcttacagg cctatcatac tggggatttg ggtgtaatga
     2161 cagatgaagg tctattactc tatggtgggc gtatggattt ccaaattaaa tataatggtt
     2221 atcgtatcga gttggaagaa gttgcccaac acttaaataa atcaacctat attgaggctg
     2281 cggtagctgt tccacgttat aatgctgacc ataaagtgca aaatctgtta gcttatgttg
     2341 tccctaaagc agggattatg gagcagttcg atcgagagtt ggagttaacc aaggtcatca
     2401 agcaggagtt aaaagaacgg atgatggatt atatgatgcc ttcgaagttt atttatcgag
     2461 acagtcttcc tttgactgca aatgggaaga ttgatattaa gggattgatc gctgaggtga
     2521 atgctcaatg atggagtttt tcaaacagct acctcagtta gagccttatg gaaatccatt
     2581 gtactttttc tatctagtct tggcgctagt accaattttt ataggaatct tttttaaaaa
     2641 acgtttcccc ttgtatgaaa caggtgttag tttagccttc attgtcttga tgtttacagg
     2701 tacaaagaca atgcaattgc tgtctttatt ggcctatatt atttggcaga caatgttgat
     2761 ttttttctac aagcattatc gtcaacgggc aaatcaaagc tgggtcttct atttaatcgt
     2821 gtgtttagct gtttttccgt tgacttgggt aaagttggca ccgactttta gtcagcatgg
     2881 ggcaattttc ggttttttag gtatttctta tttaacgttt cggtcggtcg gaatggtgat
     2941 tgaaatgcgg gacggtttac taacggaatt tagtttggga agttttttgc gatttttgct
     3001 atttatgcca actatttcga gtggtcctat tgatcgttat agacggttta cggaagatta
     3061 caaacaaatt cctgagcgaa ctgagttatt aaatatgctc gatcagacta tgcattatat
     3121 tatgatgggc ttcttatata agtttattct agcctatttt atcgggcata ctttactgga
     3181 gcctttaaag gcagtagcct tggatcaagg tggatggttt aacttaccta ctattggagt
     3241 tatgtatctt tatggttttg aattattctt tgactttgca ggctattcca tgtttgccat
     3301 aggtatttcc aatcttatgg gtattcgctg cccaattaac tttgatcaac cgttcaaatc
     3361 gcgtgatctt aaggaatttt ggaatcgatg gcatatcagc ttatcttttt ggttccgtga
     3421 tttcgtcttc atgcgtctgg ttaagacttt gttgaaacat aaggttttca aaaatcgaaa
     3481 tacggtatct aatgttgcct atctgttaaa tatgctcttg atgggcttgt ggcatggtgt
     3541 aacatggtat tatattgcat atggtctctt tcatgctttg gggttgatca tcaatgatgc
     3601 ttggattcgt aagaagaaat caattaattt agctcgaaaa aaagctgggc aagaaccatt
     3661 gccggataat cgttggacga gtttcgctgg tatgtttgtg accttccata cggtcatgtt
     3721 ctctttcttg atattttcag gatttttaga taaattgtgg ttcaagtaga caataggtaa
     3781 cgattgtata aatcgtagaa aggaatataa aatggatgta aaagaaacaa tattgaatat
     3841 tatcgaagaa ttatttatgg aagatgtatc tgaaatgatg gatgaagacc tatttgatgc
     3901 gggtgttttg gatagtatgg gaactgtaga acttattgtg gagttagaaa gtcgttttaa
     3961 tattacagtt cctgtttcag agtttggtcg tgaagattgg aatacagcta acaaaatcat
     4021 ttctggtgtt gtggagttga tgcatgcgta agcaattgtg gcagattttt gggcctgtga
     4081 tttgtgcaac gtttttagtt attctcacgt tgttgttttt cccgagttct tctcggtcaa
     4141 atttcaaaga agaaaaacaa gatgcagtag cattgtctta tattagtttt aagagtaaat
     4201 ataagaaaaa tagggctctg ggagacaaaa atcatcgttt tgttcctttc tttgggtcaa
     4261 gtgaatggtc acgttttgat agtatgcatc cgtcagtgtt ggcggatgca tatcagagag
     4321 agtatacccc ctatttgtta ggacaacgtg gtgcagcttc gctgacacaa tattttggca
     4381 tgcaacagat tggggcacat ttaaaaaata gtcaggctat ctatgttgtt tctcctcaat
     4441 ggttttcacc caaaggggca tcatctaagg catttgaaca atattttagt agtgatcaag
     4501 ctactcattt tctgcaaaca agtgctgggg atgactatga tagatatgca gcaaagcgtt
     4561 tcttagagct taaatcagac tgtagtttga caggaatgtt tcaaaaagta gctagtggta
     4621 aggaattgtc gaaatgggat agagagcagt tgacctggca agcctattta ttagaaaagc
     4681 aagatgcctt atttagtcgc tttgctgatt ctggtagtaa tttaggattg gtagaaacgg
     4741 aagcgatgaa acttccagag actttttcct atgaccgctt gagtaaagtg gctaatgagg
     4801 acgggagtcg ttctactcaa tcaaatgatt tccaaattga tgataggttt tatagaaatc
     4861 gtcttcagtc aaaaatcaaa aaacttaaac aatcccagac aaaaatatct tatctgcaat
     4921 caccggagta caatgatttt cagctggttt tgaatgaatt tgctaaacat cagactgatg
     4981 tgctatttgt aattcccccg gttaatgaac gttggatgaa ctacactggt ctcaataaag
     5041 atatgtatcg ggcaacagta gcaaagatta agtaccagtt gaccagtcaa ggtttcaatc
     5101 atattgctga tttgtcggag caggggggga tagattattt tatgcaagat acgattcaca
     5161 tcggttggca aggctggctg gagcttgata agtatattca cccattcttg gcagaacaac
     5221 aagcacctgt tcattatcag ctaaaaaaag aattcctaac ttccgaatgg gctacatata
     5281 agggagattt aaacttattt ttgaaatagt tagatacagt tatgataaaa agcaagaagg
     5341 ctttgaatta ggaagtctcc ttgctttttt gttcttttac tgtaataaac tgaatgatta
     5401 cataccttct cccaacaaac tgtggttggc tttgcggaag cgaataacat gataggcaat
     5461 catagcgtgt gagagcaggt ttaagataac aaatagtagg atatttgaat gaccgtccag
     5521 caataaggca acatttccaa ttagtaaaat gagagcatag atgaacagcc ctctcctgcc
     5581 aacttgatgg acttgttgat tatagaagga ggtcgaaagg ataccactat agaagagaag
     5641 gtttcctaca atcagcatgg gcaaggccaa atcattatga tgactaggga aaagctccat
     5701 tgccactgtg aagaaattca agccaagaac aattaccaag tgagcgtata gcagaacagt
     5761 cgcatctgcc ttgcggtgat ggtcgatagt gagataggtc tgagaaatat agaagatgaa
     5821 cagagacgcc attgcgaaga agaggaggat tccttccaaa ggaagttcta gaatcggata
     5881 atttttcaaa atcacaatga ccgtctcacc aaaggtaata atagtaatca attggcaccg
     5941 ttccaccatg tgtgggaagt tgatggggtc atgactcatt ctcttttgga agaagaagga
     6001 aatcaagaag ggaataatat agacaatcag catccgttca tcattggtcc atagcttgaa
     6061 gacgaccaac aaggttacac cggcaaagac aacaatatta gtcgccagca tctgcaaggt
     6121 tgccttgatg tcctcattaa agtcaatccg tcttcctctt aggtaatatt gtaggagaat
     6181 aatgacataa gacaaggtta aaaaggtgtt aaatggcaga gctgtttgtg caaaatcgtt
     6241 gctaaaatta agtgacatat ttccaatcag atacatggat ggaataatgg tgaaaatatc
     6301 caggaaatcc cgttcgccat atttattgag atagatggtt tcattcatcc acaaggttat
     6361 aataatcaag tttgcagtga taaatgttgt aacttccttg aaaccgatgg ggttctcgtg
     6421 tagcaagcca gtcagtgaag aagtagctaa tacaaagacc aaatcataaa ataattcata
     6481 atttgacaca cgttttgcga taatttcaga catgtcaatc tcctttttaa aaaatctgaa
     6541 atattatatc acagaaattg tgagggagcc aaccagttag tcttggagct gattttctga
     6601 aaatcgtgga aaatgtctgt aggagctatt taattgttgt ttcattagtg gatgacaact
     6661 tgtttataat ggcacaattt attcatttca tgctataata tctaagtcga aatcactaaa
     6721 cagcgcaagt tgggaggtga aactttatgc gtatactctt tgaacttgtc ctgctaccct
     6781 tgttagtatc tatattggca aacgtgattt gggaatggct aatccgatta gcggacaaat
     6841 gcgacaaata caaacaatag cctgagtgcc ttgagcaagc acaaaaaaca cccatggcgg
     6901 caaccgtggg tgttttcttt atgcgcttat ctctttgaac ttttaagcac aatgattata
     6961 acatatgtgt ctttagtttt caagtgtcca gtccaagtct ggtccgactg ggacaatacc
     7021 tgttgggtta atggttttat ggctaccgta gtagtgctgt ttgatatggt caaagtcaac
     7081 cgtctccgca ataccagagt ggttgtaaat ccgcttggta taatcccaca agtttggata
     7141 gtcaaccaaa gccttgatat tgcatttgaa atgcccaaag tatacagggt caaaacgtac
     7201 caaggtggta aagaatcgaa tatcagcctc tgtcagctga ttgccaacca gatagttctt
     7261 atcagccaaa tgctcttcca atttatctaa ggcggcaaaa aggttcttga cctctttttc
     7321 atagactgcc tgactggttg aaaaacctgc cttgtagact ccgttgttga tgtttggata
     7381 gataaaatca ttcatggcat caatctcggc ttgcaggttt gctggataat agtcatcgta
     7441 atttccagta atatcattaa aagcagagtt aaacatgcgc atgatttcag ccgattcatt
     7501 gctgacgatg gtatttgttt ctttgtccca aaggacagga acggtcacac ggccagtgta
     7561 atttggatca gtcttcaaat atacctgata gagataattg ctgttaaaga gggaatcctt
     7621 gataacaccg ggtccgtccg cgaaggtcca accattttcc aacatgagcg gatggacgat
     7681 tgacagggaa atgtggtctt ccagaccctt caattttcgc atgattaagg tccgactcgc
     7741 ccaaggacag gccagagaaa tatagaggtg gtagcgacca gactcagcct tgaaaccgcc
     7801 tcttcctgtt gggcctgcct gtccgtctgg cgtaatccag ttgcgaaatt gtgtgacagt
     7861 acggacaaat ttaccgcctg ttgacttggt gtcataccat tgatcgaccc atttgccatc
     7921 ttgtaaaagt cccatgaatt ttctccctta ctgaaaaaat gggaaatcca ataggatgat
     7981 tggatttcct ttgtaaaaaa atatatcact aactagtatt gtaaaccttt ttcaaaaaga
     8041 gtcaagctat atgatttgtg atacaatagt cccatgagat tggacaaatg tttagagaaa
     8101 gccaaagttg gctcgcgtaa gcaagttaaa aaacttttca aagcccagca aatcaagatt
     8161 aacggacacg cagctcaaag cctaagccag attgttgacc cagagttaca aactatccaa
     8221 gtttcgggta aaaaagttgc cttagaaggc tccgcctatt atttgctcca taaaccagca
     8281 ggagttgttt ctgccgtgac agaccaggag catcagacag tcatcgactt gatttctccg
     8341 caagacagta gggaaggtct ctacccagtc ggtcgcctgg acagggatac cgaaggccta
     8401 gtcctcatta ccaacaatgg tccgctcggt tatcgcatgc tccatcccag ccaccatgtg
     8461 gacaaggtct actatgtgga ggtaaatgga tgcttggctg aggatgcttc aaaatttttt
     8521 gcctcaggtg ttactttctt ggatggaaca cggtgtcagc ctgcagattt gactgtcttg
     8581 gaggcttctt tggaccatag cagagcgacc atcaagctgg cagaaggtaa gtttcatcag
     8641 gtcaaaaaga tgtttttagc ctatggtgtc aaggtcactt atctcaagcg gatttccttt
     8701 ggtggttttg agttggggga tttggaacga ggtgcataca gacaactcac accaaatgaa
     8761 atggaacatt tattcactta ttttgactag aggaggatat ataatgagca tttatgattt
     8821 tacagtacaa aaacaagatg gaacagatca gtccatggct gagtatcaag gacaagtttt
     8881 acttatagtc aatacagcgc caggttgtgg attggcacca caatacaagg aactacagga
     8941 gctatatgat agctatcgag gccaaggttt tgtagtgttg gatttccctt gcaatcaatt
     9001 tttaaatcag gctcccggtt ctgctgaaga catcaatcag acctgtagct tgaattatgg
     9061 tacaactttt cctcgttttg ctaaaattgc tgtgaatgga tctgaagcta gtccgctata
     9121 tcgctatctt aagaaagaaa aatcaacctt attaggaggt cgaattgagt ggaattttac
     9181 caagtttttg gtggatagac aagggcgtgt ggtcaaacga tatttaccaa caactagtcc
     9241 attaaaactt aaagaggata ttgaacttta cctagaaaaa taacaagaag gctggagtca
     9301 tctagccttc ttgttttagt aaccacagaa aatagggagc gccgataagg gagactatga
     9361 tgccggttgg gatgcctgtt ccgacaagta gtactcgtcc tatggtatcc gctagaagta
     9421 gaatgaagct tcctattatc atagtagctg gaatgatgac acgatggtca tttcctaacc
     9481 atttgcgcac aatgtgacca gcaatgagac caacgaaggt tatattacca actaaaatga
     9541 cactaagaga ggctagggcg gtagccaata ccaaggtaat ccgcctttca cgctgtaagt
     9601 ggagtcccaa agccatggct gtctggtcgt ttagattcat aatattgagt gagcgacttc
     9661 gactaaacgt tgccatccac accaatagaa gaagaggagt atagattgcg atagttttcc
     9721 aatctccacc atttactcga ccgctgagcc actggacaat gtattccatc ttaaagtcat
     9781 ctaattggct gatgatgctg accatgatac cagacagcat gctcgaaatt ccaactcccg
     9841 tgataattaa gcgtgcagga tggatgccgt acagcttctt acgtgcaatc cagtaaacta
     9901 gaaaaatggt taatccaccg cccatcatag caaatagagg catgagactc aataagacag
     9961 ggctgatttt tgaagagaga ccgacaaata gtgccacaac aagaccagct cctgcgttga
    10021 ttcctaatat tccagaatct gccagaggat tgcgggtcaa agtttgtagc aacaaacccg
    10081 ccaaagccag agaagcccct ccgataatgg aggcgattat tctaggtaag cgaattcgtc
    10141 caatgataag tagagtcgat gaactggcac gcccactcat gatgtcaatg agatctgaaa
    10201 aggatgaatt gctatagccg atagataagg aaagtaggaa aatgacaaat aaaaggatta
    10261 gcaggaatgt gaatattttt agatagttgt gatgtcttat caaaagtgtt tctcctttct
    10321 aatcaaccat aggaagcaag ggagaccaat gatactgatg actgcgctaa tgggagtttc
    10381 aacaggtgga ttgatagaac ggcaaaccaa atctacccag atgaggaaac tagcccctgc
    10441 aaaggcagtt aatggcaaga gtagcttgta atttttccct gtaaatatgc ggataaagtg
    10501 aggaataatg agcccgataa aagaaagcga gcccacaaga gctaccgcag aagctgagag
    10561 tagaaggaca attcccaaca aaaccaaggt catcagtaag gttcgttgac ctagattttt
    10621 agcaacggtt tcgttaagac tcaggatggt cagctgatgc gaaaagagtt gagcaaggat
    10681 gaggccgatg atgataagag gagcgatgat ggccagcatc ttccagttta cctgtaccaa
    10741 tccccctgct tgccagccaa ttactgcagt tgataaatca aagtagatag taatagcctg
    10801 accaatagca gaaaatagac ttgctaccat ggcgccagat aaaattaaac gtagttgatt
    10861 gtagcctttt tgcacctgat aagctagtcc aaagactaga ccggctgcca gacaggagcc
    10921 cagtaaacat attaataaaa tttgactgta gtgcaaacca ccgaatagag cataggcaac
    10981 aatgagagca agtcctgctc cagcattgat tcctaataag ccaggatcgg caatcggatt
    11041 gcgtgtaatt ccttgcatca ttgccccagc ttgggccatt gcagctccca ccaagatggc
    11101 ggctaccatt ctaggcaagc gcaaatcgat gataacatcc tgagcggaag aatctgtcag
    11161 tggatgcgtt agggtttcca tcagttgttg gtggctataa gaaatagctc caaagcgtaa
    11221 actaagatag actccagcta tgaaagaaag acagatgatg aaaaaaacaa gccaaatatt
    11281 ctttggcttt gttttgggat aacgagaact tactagtttg ttcatatatc cagtcctttt
    11341 actgaagttt ttgaatttct gagacaaagg cgtcaatttg taaatctaaa gacatcggat
    11401 cggagaagta gaagaggtta tagtctatct cgatgacgtg accattcttt acagcaggta
    11461 gatttttcca aatatcactt tctttgagag aggcagctgc ttcttttgtt ttatcattga
    11521 cgttaacaag cacatagtcg ccaacatatt ctggaagagc ttcttgagat accccaaacc
    11581 agccttcttt attgatgatg tcttcttgaa cctttgcagg agcggcaaaa ccgagagcgc
    11641 gatagattaa ttctccacca cgaccaaagt tattaccata aaggaagatg ttcttatcga
    11701 agaagtccat gacggtaaat gttgaacttg tatcaatcaa tcctttcaat tcctctttcg
    11761 cagtagcaac tttcttatcc cattgatcta accaggcttg tgcttccttt tcttttccaa
    11821 aaacctgacc aatatctgtc agcattttca agtagtcact ctttccataa gtgatttcaa
    11881 taactggagc aatttctttc agtgtttcta agttatcatc accagaaaat actagaatga
    11941 catctggctt ttgtgtggca atcgcttctg tatctgccgt tgtcaattgt ggaacatcct
    12001 ttagtttgtc tccaaagacg ggactatttt tctctaaatc tagactatag ctagatacat
    12061 caattcctaa ttgtaagaga tagcctgtgt aagagtaagc aaagttgaca acttttttag
    12121 gattttttgg aatgtcaccg tggtaagtaa tgccttcaat ctttggcatg ctagacaatt
    12181 ctacgtctgt tgaagaggaa gaggtagaac aagctgttaa gaaaaccagc ccaacaaata
    12241 aactaaaaat agctaaaaac tttttcattt tttctcctta ttattttttt aaatcgtaag
    12301 ttagcaaaat agggtaatct tgaccagcaa cctgcatcaa ttgaggttca atgctaaaaa
    12361 tgtccctcag tatctcagtt gtcatcatat tggacacaga cccatggtag cgaatatctc
    12421 cctctttcat ggcaatcata taatctgaaa atcgagctga taaattgaca tcgtgaagga
    12481 ccatcacaat ggttttctgt cggctttgat tcagttcttt taaaagttct aagacttcca
    12541 attgatgatt gagatcaaga taggttgttg gttcatctaa gaaaatggta tccgtatctt
    12601 gggcaagtgc catcgcaatc caaacacgtt gcctctgacc acctgataaa tcatcaactg
    12661 gtaacctagc gtagggagcg gtctgggtga cttccaaggc ccagttgatt ttctctctat
    12721 cctgatcagt gagatgcccc agcccatttt gatgcggaaa gcgaccatag gagaccagtt
    12781 cataaacaga aatcccttct gtcgcttcta agacctgagg gagcagggcc aatttttttg
    12841 caacttcttt ggttggcagt tgtgaaatgg cttgtccatc taaatagata gccccttctt
    12901 gaacaggaat aatccttgtc aacgccttaa gcaaggtcga ttttccacag ccattggcac
    12961 caatgattgt cgttatactt ccttttggaa tacttgttga taattcatca ataataatcc
    13021 gattgtcgta agagacttgg atattttccg cttgaatcga agacacaaac tcctcctttc
    13081 cagaatatga ttcattaata atttgttccg accagtatta tatcaaaaaa atttaccaaa
    13141 acaaagagtt ttctgaaaat tttaatttaa tgagaatcgt tataaaaaag tccttgtctg
    13201 tgaacaagga ccgtatgtta caaatattgt tttgctactt ccaaatcacc gtcataggcg
    13261 gccttttcgc cgtttacaat ctggtaggcg tcagccccct tgcctgcgat gatgacggca
    13321 tctttcggag agcttgtctg actcatggct gtgcgaatag cttcttcccg gtccaagata
    13381 aagttgcttg gacgggtcat gtgggcacgg atttgttcag caatagcagc tgggtcttca
    13441 cggttggggt catcagctgt cagaatcacc tcaatctgcg gatagtcatt gagcagaaga
    13501 ccgaagtctt tgcggcgact ttctcccttg ttaccaggag ctcccaaaat caaaaatacc
    13561 ttgccagtct ggtgctctaa gacgacatca atcagcttct tgacactatc gccgttatgg
    13621 gcgtagtcca cgaagacctt ggcaccattt tgctgggtca ggacttccat acgaccaggg
    13681 acattggttt gggcaatccc tgtgtgaata tcttccagac ttgctcccaa acggagacag
    13741 gccagtccag ctgcgatggc attttcttgg ttgaaaccac caatcagctg gatgtcgtaa
    13801 tggccagcca atttgccagt cgctgtgaaa tcaaaacctg ctgactgact aatctggttt
    13861 tcagaagtcg gcccataaaa gtcatggtct ttggagctga cttgctcttt cacgacttca
    13921 aaatggtcca ttcctgcatt gacaataacc gctctgctat tgtccatcaa aagacgctta
    13981 tggtagaagt agtcctcaaa ggtcggatgc tcaatggggc cgatgtggtc ggggctgatg
    14041 ttgaggaaga caccgacgtc aaaggtcagc ccgtaaaccc gcttgaccaa gtaagcctgg
    14101 ctggacacct ccataatcaa gtggctcatg ccgttcttga ccgcctccgc catcatggca
    14161 aagaggtcta ggctttcagg cgtggtcagg gtggacttga agaaggtttt tccgtccagc
    14221 gtggtgttca tggtcgaaag catggcaggc ttgtggttga ttttaaggat gttaaaagca
    14281 aaataagccg ccgttgtctt acccttggta ccggtgaaag ctacgagttt gagctgtttc
    14341 tggggatgac catgaaattc catggcaatc aggctcatag cctgcttgat gtcgtggacg
    14401 atgatagcag gaatgccgac ctcatagtcg atttcagaca cgtaaaaagc cagcccaacc
    14461 tcgatagcct tttccagaaa ttccttctta aaggccaaac ccttggcaaa aaagagggtc
    14521 gttgggctaa cagtccggct gtcatagctg agagcgtcaa actggacatc cgtccatgtg
    14581 ctgtcagtct ggccattctg tttgatatgg cggaagttag catccgcctt caatatttct
    14641 aatacacgtt caattgtaat catgcttcta ttgtaaacct atcgaggata tttgacaagt
    14701 ctgggctatg taaatagtgg gtattttgac cgtaaatttg aatgaatatg acatttcgcc
    14761 ctggagtaaa tttgtgctat aataggaggg attgaaaaag gagaagttta tgttttattc
    14821 ttatctacga acactattaa cattcttgtt gtgggccatc aatggcaata ttcactatca
    14881 tgatagagag aagattttgc cacaggagga aaattatatt cttatcgctc cgcacaaaac
    14941 cttctgggat ccagtcttgc ttggctacgc agctgctcca aagcagttca tctttatggc
    15001 taaaaaagaa ctcttcaagg accgcggttt tggttggtgg atttcaaaat gtggagcctt
    15061 tccaattgac cgtgacaatc ctggcatggc agccatcaag tatccagtta acatgttgaa
    15121 aaaaagtgac cgttcgctgg tcatgtttcc ttctggaagt cgtcattcat ctgagctaaa
    15181 aggtggtgtg gcggtcattg ccaagtcagc caaggtcaaa ctcatgccag ctacctatgt
    15241 gggtcccatg actatcaagg ggctcttagc tggtgagcga atcgatgtgg cttttggaaa
    15301 tcctatcgat gtttcggaca tcaagcgtat ggatgatgca ggtacagcag aagtaactag
    15361 ccgaattgag gctgagttca aacgcttaga tgaccatgcg gcatctttcc aaaccaagaa
    15421 aaaaccaaat atcttgactt atatctatcg tatcccagtt cttttgctgg ttgctcttat
    15481 cttgggattg acctatgcct ttagttatat tgccagcttc ttctggcaac caagtactca
    15541 gttggataaa aaataagtaa atgaaactcg cagcttgcgg gttttttgta ttttttacga
    15601 actatatagg tggaggtaat ttatggatac gattaaaact tatatagaaa tgcttaaaga
    15661 atacaagtgg caaattgctc tgcccgcagt ggctggcttg ctaatggcga cgttcttaat
    15721 attcagccaa ccagccaagt ctgatcagac aggcctgaca gattttccgc agaccgcaca
    15781 aacttctagc agctctgact tggtcgagga aaccagtaca gaagcaagtg aagagcccag
    15841 ccagctggtt gttgatgtca aaggagcggt agtaaaacca ggactctaca ctttagaagc
    15901 tgatgcgcgt gttaatgatg cagttgaggc ggctggtggc ttgaccagtc aggcagaccc
    15961 caagtctatc aatctggctc agaagctcag cgacgaagcg gtggtctatg tggccagcaa
    16021 ggacgaaaac atctcggtgg tggctagcac gactgctagc tctgctatgt cctcagaaga
    16081 aaaaagcaca agtcaggtca atctgaatac ggcgaccgag gctgacttgc agaccatttc
    16141 tggtattggt gccaagcgag cgacggacat tatcgcctat cgtgaggcca acggtggctt
    16201 caagtcggtg gatgacctca acaatgtgtc gggcatcggc gacaagacta tggaaagcat
    16261 ccggccttat gtcacggttg agtaagctcc cctgccagcc cgttcacctg gcagtcttgg
    16321 cggtggcagc ttactttgca gtccactctt tttccctctt gacaatgggc ctgctgagtt
    16381 tgttgttgct ggtctttgga tttcggcaag gtaaggcagt tttcatcaaa acgctgccgc
    16441 ttttagccct atgtggtctg tttttcggat accaaaaggt ccaatgggag cgggcagacc
    16501 agttagcccc agagcaagtg acgactatgc aggtcattcc agatacgatt gaagtcaacg
    16561 gggatagcct gtccttccgc ggtcgggctg acggacaaac ctatcaggtt ttctataaat
    16621 taaccagtca ggaggaacag acctattttc aaaagctgac aggtttggtc cagcttgaag
    16681 tggaagcaga gatcagcctg ccagcaggtc agcggaattt caagggcttt gactatcagg
    16741 cctatctgaa aacacagggt atttatcgga cggtcaagat tacggcaatc aagaagattg
    16801 tcccagtcca gtcttggaat gtctttgact ggttgtcaaa ctggcggagg caggccttgg
    16861 tctatgtcaa aaccaatttt ccggctccca tgagccacta catgacaggg cttttgtttg
    16921 gggagctgga tagtgagttt gaccagatga gtgacctcta ttccagtttg ggtatcattc
    16981 atctctttgc cctgtctggt atgcaggtgg gctttgtcat cgacaagttt cgctggattt
    17041 tactgcgttt gggcttgacc aaagaaacgg ttgataaatt acaaattccc ttttcccttg
    17101 tctatgcgag cttgacaggt ttttccgtat cggtggtgcg gtctttggtt caaaaaattt
    17161 tgggtaatct gggcttgcgg aagttggata actttgcggt gacagttttt gtctgtctgt
    17221 tgatactgcc ccgatttctg ctgacagctg gtggtgtcct gacctttacc tatgcttttt
    17281 tgctgacggt ttttgatttt gaggacttgg ggcaggtcaa aaaggctgcg gtggaaagtc
    17341 tcagtatttc acttgggatt ttgccagtgc tcatgaccta tttctatgcc tttcagcccc
    17401 tgtctatcct cttgaccttt gccttttctt ttgtctttga tgtcctactc ttgccaggct
    17461 tgtcagtcat ttttctcctg tcgccaatcg tcaagattac ttgggtcaac ggattttttg
    17521 tctttatgga aaaaatcatt gtctgggtgg cggatttggg attgcgacct tggatactgg
    17581 gcaagccgtc tgagctggtc cttttgctct tgctggtcag cctcttctta ctctacgatt
    17641 tccacaggag aaagaaatgg cttctaggac tgagcttggt cctcgctctg ctatttttca
    17701 taaccaaaca cccgctggaa aacgaggtga cggtggtgga catcgggcag ggggacagca
    17761 tctttttgcg ggatatgcgg gggcggacgg tcctgattga tgtgggcgga cgagttgatt
    17821 ttgcggccaa ggaagcgtgg caggagcggt ctcggcaggc aaatgcagag cggactttga
    17881 ttccctatct gcatagtcgg ggtgtggata ggattgatag tttagtcctg acccacaccg
    17941 acacagacca tgtgggggat gtgctggaag tggcgaagca ggtccagatt ggtcggattt
    18001 acgtgtcgcc gggaagcctg acggtgcctg actttgtagc caccttgaaa gaaattaatg
    18061 tccctgttca tgttgttgag gtgggcgaac gcttaccaat ttttgactct tacctggaag
    18121 tcctttatcc agatgggaca ggagacggtg gcaataatga ctccattgtc ctttatggtc
    18181 gcttgctgaa aactaatttt ctctttacag gggacttgga gcagggggag ttggacttga
    18241 tagaatctta tcctaacctg cctgtcgatg tcctcaaagc cggtcaccac ggctccaaag
    18301 gttcttccta tcctgaattt ttggaccata tcgaagccaa gattgccttg gtatctgctg
    18361 gagaaaacaa ccgctacaag catcctcacc aagaaacctt ggaacgattt gatagtcgca
    18421 atatccaagt ctatcgtaca gaccagcaag gagccattcg cttccgaggt tggagggagt
    18481 ggaggattga aacggtgagg aggtaaaatg ataaatccta tgcacttatg gttctatagt
    18541 ttcaaagttt atgtgctcgc tgccttatct ggctatattc tgcactatgt tactacgcca
    18601 gcttctgtta acgacttcaa agaggttgct gccttattgg aaagatgcta acaatctgtg
    18661 attgtagcag attgggctat ctcagtcagc agtcttgctc attccattgt atttcaaata
    18721 gtctatattt tgaatttaag aattgatttt catttctttt cattaaatat tgaaatcgtt
    18781 ttcggatttg tgatataata aagtatgatt taccaaagga ggaagtccta tgtctgttaa
    18841 agattttatg acccgtaaag ttgtttatat ttcaccagat acaaccattg cacacgctgc
    18901 agatattatg cgtgaacagg atttgcaccg tctacctgtt attgaaaatg ataagttggt
    18961 tggtttggtc actgagggaa caatcgcaga agctagtcca tcgaaggcaa ctagcctatc
    19021 tatttacgag atgaactacc ttttgaataa gactaaggtc aaggatgtga tgattaagaa
    19081 tgttatcaca gtctcaggtt atgctagtct tgaagatgct gcttatctca tgtataaaaa
    19141 caaagtgggg attcttccag ttgttgacaa cggccaacta tatggggtca ttactgatcg
    19201 tgatattttt gcagcttttc ttcatgtctc aggttatgga gaagaaggag tacgcgctcg
    19261 gttccttgtt gaaaataagg caggggagtt agaaaaaatt attcgattgg tggcagataa
    19321 ggattataat attgtatcta ctgtgcaact tgctaccaag tctggaaaag ttgtcatcga
    19381 agtgcagatt gacggaaaag ttgatgttga agaagttcga actcttttcg aaggtgcagg
    19441 tatccaagtg gatagcttgg ttccgactgt tgctaaaaat atttaaaaac cgagatttct
    19501 cggttttttt ctttagctat cattctagta ttttagggga atgtgatata ataaagtata
    19561 tcacgtatga ggaggctcta tggggcacaa atataaaaag tataagaaat atggtaaaaa
    19621 taattcagga cttg
//
LOCUS       DASGCC010000026        19409 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.026, whole genome shotgun sequence.
ACCESSION   DASGCC010000026 DASGCC010000000
VERSION     DASGCC010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19409
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.026"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            35..2728
                     /locus_tag="U1404_000640"
     CDS             35..2728
                     /locus_tag="U1404_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellobiose phosphorylase"
                     /protein_id="HEM5347618.1"
                     /translation="MNKVEFIDQNGSFTLKQAQKNHTLYFPLASEKGLKSSITPLLGG
                     DSKISQNSFILEPVSIENLHNNRSTRNVWTCIDGKETISLTGQSSDYDRDIAKEKQHD
                     QVTAGFMWHQLERTDEIANISTSITNFIPVSANIEVMHIRLKNLSNHPRRFSTYVAVP
                     IFGRSADNLRDHRHVTSLLHRIHTTKNGVVVNPTMTFDERGHHPNHLHYYVAGYTGEG
                     HTPVAFYPTVEEFIGESGNFTHPEAVFQHYPGYSDYKIDGREAMGAFRFEEVTLQSGQ
                     ETSYIVLLRITEEDTNIEEALADYSTDTQIQQHLEQTKQYWNNKVNVRFETGQADFDQ
                     WMKWICFQPYLRKIFGCSFLPHHDYGRGGRGWRDLWQDCLSLLLLEPTQVRRMIVNNF
                     KGVRIDGTNATIIGSGEGEFIADRNGITRVWMDHAFWPLLTTKLYIDQTGDTSILTEK
                     VSYFKDRQVKRGTAIDKEWKEENGSQLLTIDGNIYLGSILEHLLIEQLATFYDVGEHN
                     FYRLRDADWNDALDMASERGESVAFTCAYVGSMMDLAHLIRVYASQLEDQTIQLPEEF
                     ETLLSQDLEVYDDYSKKQAVLQKFSEACKHKLSGKTIRVTFAELAVNLIEKANWLREQ
                     IQKTEWLSEDENGWFNSYYDNNGHQVETCHTNHPKMMLTGQVFSIMSYVANDQQIQSI
                     IRSADRHLYAPECGGYRLNTNFNEIKMDMGRMFGFAYGEKENGAVFSHMTTMYANALY
                     RRGYAKAGWKALKSLANTALDYGTSRIYPGIPEYFRADGKGLYHYLTGAASWYLYTML
                     TEVFGFQGNLGNLILYPKLVAEQFNQQNLAQVTTTFAGKTFILTYHNPLRKEYGDYVI
                     SQAYINGIDLPISDDAYATLSKEKIEKLDSNSIHQITITLS"
     gene            2748..5159
                     /locus_tag="U1404_000641"
     CDS             2748..5159
                     /locus_tag="U1404_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetylchitobiose phosphorylase"
                     /protein_id="HEM5347619.1"
                     /translation="MQYGYFDDKKKEYIITNPATPAPWVNYLGSPEYGAIISNNAGGY
                     SFATSGANGRILRYIFNHMDQPGRYIYIRDNDSKDYWSASWQPVGKDLLDYSIQCHHG
                     LGYTTMNAKYSSIATSTTYYVPKDQTYEVWAITLTNHSNQTRNLTVSGYAEFTNHGNY
                     EQDQVNLQYSLFISRTKFATNKIVQQLHGNLDSLKDEDQVDEKNVTERFFGLAGAQIS
                     SYCGDKQEFLGSYNGYHNPQGILSGHLGNILNTSENACGALSSQVILKPGQSKTIAFI
                     LGEKTQEEADRILHRFTNTEKEIKDDLLALKELWNSRLANLQVKTPSSEFNSMLNIWN
                     AYNCYMTFIWSRAASYIYCGLRNGYGYRDTVQDIQGIIHLHPEMAVDKIRFMLSAQVN
                     NGAGLPLVKFTHNAGHEDTPDDPSYVQETGHPAYRADDALWLFPTIYKYITETGNIDF
                     LDEVIPYANHGKATVYQHLQAAIDFSINHLGPHGLPAGLHADWNDCLRLGANGESSFV
                     ALQFYYALSIIKEFAVEKNDTAYLKQIEQLQEEYYSKIQHLCWDRDRFIRGFTENGEK
                     IGTPEANEANLWLNPQSWSVISGLANPDQAKLAMNQVFNRLNTQFGAILMDPPYHKEA
                     FDGALAVIYNQGTKENAGIFSQSQGWLILAEALLGNGNRAFNYYLENSPAAQNTIAEI
                     RKLEPYCFGQFTEGKDSPHFGRSHVHWLTGTASTMMVASVEGILGIRPTLDGIRLSPA
                     IPKEWPEVQITKQFRGKTLHITISNPHKKEAGCSSLILNGVEIDGNYIDQSLLKEENS
                     ILLTL"
     gene            complement(5264..5524)
                     /locus_tag="U1404_000642"
     CDS             complement(5264..5524)
                     /locus_tag="U1404_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM5347620.1"
                     /translation="MSIELYKVRQGKIVSGVLAGIAHKLGWESWITRAIFIAGLLLGK
                     SFLLLIALYIAAAYFLPYKEDRDAERYGTGPRKIKEAEKIHK"
     gene            complement(5514..6275)
                     /locus_tag="U1404_000643"
     CDS             complement(5514..6275)
                     /locus_tag="U1404_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347621.1"
                     /translation="MTQKREERLIELYEKGVLTKEEARACFKEMNQEPDFLFVEEKVK
                     LNFTLPSFKVFASSKLKQSYSFEGIESLFLKLSEGRLTLAKSKNNQISVEICYNQDAP
                     EDKLPRLYVEKKGLYFHSSLACRLTINLPQEWMSVLDLELGQADARLDYLPFEDISIR
                     SSRDKKQQDIRLTTCGGYPQHLYVQLAQAPLTLQTGKGQGIRGQIESQSGHVLVNRKK
                     KNSPYQFEKSGNDLLFLKVQTGQGGFYVKGIKDVN"
     gene            complement(6345..6779)
                     /locus_tag="U1404_000644"
     CDS             complement(6345..6779)
                     /locus_tag="U1404_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HEM5347622.1"
                     /translation="MDLNKYVQEVSLRDFGKEFRHVAIWNRRLRSTGGRFFPRDGHLD
                     FNPKHLEEQGLEVFRKIVRHELCHYHLYFEKKGYRHGDRDFKELLAAVDGLHYAPKLE
                     QAAKPSLLYTCQSCGQVYQRKRRIDLKKYRCGKCRGKLTLKE"
     gene            complement(6766..8922)
                     /locus_tag="U1404_000645"
     CDS             complement(6766..8922)
                     /locus_tag="U1404_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEM5347623.1"
                     /translation="MEEKYLKIAQELGVSLKQIDTVLSLTAEGNTIPFIARYRKDVTG
                     NLDEVVIKSIIDRDKALTALADRKATVLAKIEEQGKLTDQLRQAIEEAEKLADVEELY
                     LPYKEKRRTKATVAREAGLFPLARLILQNVADLEEQAASFICEGFDTAQACLAGAVDI
                     LVEAISEDNKLRAWVYHEVQTNSSLTSELKDQEADEKEVFQIYYDFSEKVAKMQGYKT
                     LAINRGEKLGVLKVSFEHNVDKMVRFFELRFPQSNSYIKDVIQQAIKKKILPAMERRI
                     RTELTEEAEEGAIQLFSKNLRNLLLVSPLKGKIVLGFDPAFRTGAKLAVVDQTGKLLT
                     TQVIYPVEPAGQRQIAQAKKDLADLIGQYQVEIIAIGNGTASRESEAFVADLLKDFPD
                     VSYVIVNESGASVYSASELARYEFPDLPVEKRSAISIARRLQDPLAELVKIDPKSIGV
                     GQYQHDVNQKSLSESLDFVVDTVVNQVGVNVNTASPALLAHIAGLNKTISENIVKYRE
                     ENGALTSRQQLKKVPRLGDKAFEQAAGFLRIPNATNFLDNTGVHPESYKAVENLLELL
                     AIDHLDEAAQEKLKQVAIADTAEKIGVGQETLKDIIADLLKPGRDLRDDFEAPVLRQD
                     VLDVKDLVVGQELQGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQALPH
                     PSEVLAVGEIVTVWVVEVDIKRNRIGLSLLKPNGSE"
     gene            complement(9004..9846)
                     /locus_tag="U1404_000646"
     CDS             complement(9004..9846)
                     /locus_tag="U1404_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5347624.1"
                     /translation="MTRYTFSNGVTVPKIGFGTWQIPDGEVAYGAVSYALEAGYRHID
                     TAQIYGNEASVGRAIADSGLAREDIFLTTKVWNDKIGYEDTLASVEESMQKLQVDYLD
                     LLLIHWPNPKAIRDSIGWKERNAQVWKALEELYRAGKVKVIGVSNFMEHHLEALLETA
                     EIIPMANQIMLAPGTPQSELVAYCKAKGILLEAYSPFGTGSLFQSQEAADLAKEAGCS
                     VAQLALAWSLDKGFLPLPKSTSPENIKANLEIDGLAISPTAVAKLDKLEGVKGRLDPD
                     QAEF"
     gene            complement(9962..10477)
                     /locus_tag="U1404_000647"
     CDS             complement(9962..10477)
                     /locus_tag="U1404_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HEM5347625.1"
                     /translation="MNTSKWTARDMAEIALVAAIYVALTLTPPLNAISFGAVQFRLSE
                     MLNFLAFYNRKYIIAVTIGCMISNLIGFGVIDLFVGGFSTLIFVTLGVILFEKYKKDY
                     LFGGLFNKAFFYFSFFFAATMFTIALELKVLYDLPFFLTWLTTAAGELLSLLVGAVVI
                     DKLSKKINFEK"
     regulatory      complement(10475..10577)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01054"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class II; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF01054"
     gene            10606..11043
                     /locus_tag="U1404_000648"
     CDS             10606..11043
                     /locus_tag="U1404_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM5347626.1"
                     /translation="MKKLFYQLINNEVILYLIAGVAATLVYMVTRMGLFLVIPSILLV
                     TLLANAVAILFAFWTNDRFVFKQAREGWPQRLVKFVSARIATLVMDMALAYLLVQAYP
                     QLIGQFVNHDLTLVNAISTLFSQVLVIVLNYVLSKLFVFKDKK"
     gene            complement(11203..12132)
                     /locus_tag="U1404_000649"
     CDS             complement(11203..12132)
                     /locus_tag="U1404_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEM5347627.1"
                     /translation="MKKTKIVEGLKTFCSTFFSFYRSADSDVTSVAVAYYLLISIFPI
                     LLTLANLLPYYPFDVDMILSVVAEFVPDKLYPSVSSFITSVLTKPSSSWLGISILTTL
                     WTLSRSMTILQKAFNKAYGINEHRDFIIGHLIGIFLGIGLQVIILLSITLLTFGQAVF
                     SYINKLVPIEDAWLKGLLSQTQLVGLMALFAALVMLYFFLPNVRIKKVRYVFPGTLFV
                     LLTMTSIGKLFSIYVDNYANKLLDFRIVTAVVFLVFMLWFIFMAQVLIIGAMINATVQ
                     SMQVEEFHARDGDIVSILNRLKARFTAIDKEWE"
     gene            complement(12180..13040)
                     /locus_tag="U1404_000650"
     CDS             complement(12180..13040)
                     /locus_tag="U1404_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl aminopeptidase"
                     /protein_id="HEM5347628.1"
                     /translation="MITIKSQREIDAMNRAGDVLAGIHIGLREIIKPGVDMWEVEEYV
                     RKTCKEKNVLPLQIGVDGELMDYPYATCCGLNDEVAHAFPRHYKLKEGDLLKVDMVLS
                     EPLDKAVVDVSKLNFNDVKAMKKITQTYRGGCADSCWAYAIGQVSEEVQNLMDVTKEC
                     LYRGIEQAVVGNRIGDIGAAIQEYAEGLGYGVVRDLVGHGVGPTFHEEPMVPHYGTKG
                     RGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVI
                     LTSQGEEGTY"
     gene            complement(13037..13609)
                     /locus_tag="U1404_000651"
     CDS             complement(13037..13609)
                     /locus_tag="U1404_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347629.1"
                     /translation="MTLWTRLAKFAYFETDRLYLRPFSFEDGESFYEIVANPENLPFI
                     FPALEDRNIAFSTMVEKFMRSPLGNWALVDKYSERMIGALCFEKVDERQLSAELSYFL
                     KKDYWRRGLMTEAVRTLVYLAFYEFGLRELVIVTHEENVASQMVAKKAGLVQVAQYRG
                     SDRYSHKTRNYLKFSLKRAEFSLEMYEENE"
     gene            complement(13704..14963)
                     /locus_tag="U1404_000652"
     CDS             complement(13704..14963)
                     /locus_tag="U1404_000652"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM5347630.1"
                     /translation="MRKIVINGGKTLKGSVTVSGAKNSVVALIPAIILADGIVTLDGV
                     PAISDVDSLVDIMETMGATVKRDGETLEIDPRGVKDMPMPFGKINSLRASYYFYGSLL
                     GRFGQAVVGLPGGCDLGPRPIDLHLKAFAAMGAETTYEGDYMRLATNGQRIQGAHIFM
                     DVVSVGATINTILAAVKAEGRTVIENAAREPEIIDVATLLNNMGARIRGAGTDIITIE
                     GVDSLKGTRHQVIPDRIEAGTYIALAAAVGEGIRIDNVLYEHLESYIAKLEEMGVRMT
                     ISEDSIFVEKQEKLKAVSVKTSPYPGFATDLQQPITPLLLKAEGTGTIVDTIYEKRVG
                     HVQELANLGAKISTRNNHIAFEGPNQLTGTSVKATDLRAGAAMVIAGLMAQGRTEITN
                     IEFILRGYSNIIDKLTELGADIQLIED"
     gene            complement(15111..15725)
                     /locus_tag="U1404_000653"
     CDS             complement(15111..15725)
                     /locus_tag="U1404_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5347631.1"
                     /translation="MKALIVFAHPRKESFTHALVDRVAEALLENGAEVVIRDLYEIGF
                     DPVLRGEDTIHIEDGKFIRQATVFPADVQVEMDLIAESDLLVYIFPSWWNGMPAIMKG
                     YVDRVFQHGFAYSFESDEPRKLFSTKKAIFFTPTGQPQNADGSLTPIDQAMKSLTSEW
                     LFNSNGAQVIDHIFYGRVPYLTREELELYLVDAREQIQRIFHKL"
     gene            complement(15756..16946)
                     /locus_tag="U1404_000654"
     CDS             complement(15756..16946)
                     /locus_tag="U1404_000654"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEM5347632.1"
                     /translation="MSERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAE
                     TAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSP
                     DIARGVNEALETRQDASQDPLDLIGAGDQGLMFGFAVDETPELMPLPISLSHKLVRRL
                     AELRKSGEIAYLRPDAKSQVTVEYDEDNQPVRVDTVVISTQHDPEVSQEQIRQDVIER
                     VIKEIIPAHYLDDQTNYFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFS
                     GKDATKVDRSASYAARYIAKNIVAAGLAKKAEVQLAYAIGVAHPVSVRIDTFGTSTVA
                     ESKLEAAVRQIFDLRPAGIIQMLDLNRPIYRQTAAYGHMGRTDIDLPWEKLDKVEALK
                     TAVL"
     gene            complement(17669..18136)
                     /locus_tag="U1404_000655"
     CDS             complement(17669..18136)
                     /locus_tag="U1404_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine/deoxycytidylate deaminase family
                     protein"
                     /protein_id="HEM5347633.1"
                     /translation="MSTNRLAWDEYFAAQALLIANRATCKRAKVGAVLVKDNKVIATG
                     YNGSVSGTEHCLDQECLMIDGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNC
                     SKQLLQVGCKRVVYINEYRMDDYAQYLYKEKGCELVHLPLEVVKQAIADTEFI"
     gene            complement(18193..19107)
                     /locus_tag="U1404_000656"
     CDS             complement(18193..19107)
                     /locus_tag="U1404_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4238 domain-containing protein"
                     /protein_id="HEM5347634.1"
                     /translation="MEKHRVRQHIVPQAYLKKFAQKNVNNSGANISVYQKANNRQFNC
                     AVKNVAFEKNYYDVTNKENTKYWEEHFATHIEPLYGNELTNIISSIMLSNSNENVLNP
                     SQKFSLAMMIVFQIIRVPKFLKGRFQNGEVIFDETIRELIQLMPMEFISKNIEVLEDL
                     KRERKNLIKDITIELIAQHDMLDRLAKYIENRTWLFYVNNSEVPFVTSDNPALMYNFT
                     TNSINREDVGIGRRDTIIYYPLTSRVLLELLPQNDNCKHFDNFIMEIGNEKLKFIKSL
                     NTLQLLGSHSQVFMHPRYSFNESTFYHF"
BASE COUNT         5961 a         4360 c         3530 g         5558 t
ORIGIN      
        1 ctatcttaac gacctatatt cagaaaggat tcttatgaac aaagtagaat ttattgatca
       61 aaatggtagc tttacattga aacaggctca aaaaaatcac acactctatt ttcctcttgc
      121 atccgaaaaa ggattaaaaa gttccatcac accattatta ggtggagatt caaaaattag
      181 ccaaaatagc tttattttag aaccggttag tattgaaaat ctccataata accgctccac
      241 ccgtaatgta tggacctgca ttgatggaaa agaaacgatt tccttaactg gacaatcttc
      301 cgattacgat agagacattg ctaaagaaaa gcaacacgac caagtgacgg ctggatttat
      361 gtggcatcaa ttagaacgta cggatgagat tgctaacata tcaactagta ttacaaattt
      421 cataccagtt tcagccaata ttgaagtcat gcatattcga ttgaaaaatc tttccaatca
      481 tccgagacga ttctctactt atgtggccgt tcctattttt ggaaggagtg ctgacaatct
      541 gcgtgatcac cgccatgtaa cttcattatt gcatcgtatt cacacaacta aaaatggggt
      601 tgttgtcaat ccgaccatga cctttgacga acggggacat cacccaaatc atttgcacta
      661 ttatgtagct ggttatacag gtgaagggca caccccagta gcattttacc caactgtaga
      721 ggaatttatt ggagaaagtg gtaactttac tcatcccgaa gctgtttttc aacactatcc
      781 tggttattct gattataaaa tagatggaag agaagcaatg ggagcctttc gctttgaaga
      841 ggttactctc caatctgggc aagaaacttc ctatattgtt ttgttaagaa ttacagaaga
      901 agatacaaat attgaagagg ctttagctga ttactcaact gatacacaaa ttcaacaaca
      961 tttagaacaa actaagcagt attggaacaa caaagtgaat gtgcgatttg aaacaggcca
     1021 agctgacttt gatcaatgga tgaaatggat ttgtttccaa ccatacttga gaaaaatttt
     1081 tggatgttca ttcctcccgc accatgacta tggaagagga ggccgaggtt ggagagacct
     1141 ctggcaagat tgtctctcac tgttactatt agaacctaca caagttcgac gtatgatagt
     1201 caataacttc aaaggtgttc ggatagatgg aacaaatgcg acgataattg gctcgggaga
     1261 aggagaattt attgcggacc gaaatggtat tacccgtgtt tggatggatc atgctttttg
     1321 gccactgctt actacaaaac tctatattga ccaaacagga gatacatcta ttctgactga
     1381 aaaagtttcc tatttcaaag acagacaagt aaaacgtggc acagccattg acaaagaatg
     1441 gaaggaagaa aatggttcac agttgcttac tatagatgga aatatttact tagggagcat
     1501 tctggaacat ttactgattg aacaattggc tacgttttat gatgtcggtg aacacaattt
     1561 ttatcgatta cgtgatgcag attggaatga tgctttggat atggctagcg aaagagggga
     1621 aagtgtagca tttacctgtg cctacgttgg cagtatgatg gatttagctc atcttattcg
     1681 agtttatgca agccagctag aggatcaaac aatacaatta ccagaagagt ttgaaacact
     1741 gctttctcaa gacctggaag tttatgatga ttattcaaaa aaacaagctg tactacaaaa
     1801 attctctgaa gcttgcaaac acaaattaag cgggaaaacc atccgtgtta catttgccga
     1861 actcgcagtt aatctgattg agaaagcaaa ttggttgcga gaacaaattc aaaaaaccga
     1921 atggttaagt gaagatgaga atggatggtt taacagttat tatgataata atggccatca
     1981 agtagagact tgccacacca atcatccaaa aatgatgttg actggacagg tcttctctat
     2041 catgagctac gtagcaaatg accaacagat tcagtctatc attcgtagcg cagatcgcca
     2101 tttgtatgct cctgaatgcg gtggttacag actgaacaca aactttaatg aaataaaaat
     2161 ggatatgggc cggatgtttg gttttgcata tggagaaaaa gaaaacggag ctgttttttc
     2221 tcatatgacg actatgtatg ctaacgcttt atatcgtcgt ggctatgcga aagctggatg
     2281 gaaagcatta aaatctttag caaatactgc attggattat ggcactagcc gaatctatcc
     2341 aggaattcca gaatatttcc gagcagatgg aaaaggcctc tatcactacc tgactggagc
     2401 tgcaagctgg tatttgtata ctatgctaac agaggtgttt ggttttcaag gaaatcttgg
     2461 gaatctcatt ctctatccaa aacttgttgc tgaacaattt aatcaacaga acctagccca
     2521 agtaacaaca acttttgctg gcaaaacctt tatcctcacc tatcataatc cattaagaaa
     2581 agaatatggt gactatgtta tcagtcaggc ctatatcaat ggaatagacc ttccaatttc
     2641 agatgatgcc tacgccactt tatcaaaaga aaagattgag aaattggatt ccaacagcat
     2701 ccatcaaatc accattacac tctcttgaat actcgaaagg aaatattatg caatacggat
     2761 actttgatga taagaaaaaa gaatatatta ttaccaaccc tgctactcca gccccttggg
     2821 tcaattatct aggttctcca gaatatggtg caatcatttc aaacaatgct ggtggctata
     2881 gttttgcaac gtctggtgca aatgggcgga ttctgcgata tatatttaat catatggacc
     2941 aaccaggacg ttatatctac ataagagaca atgatagcaa agactattgg tctgcatcct
     3001 ggcagcctgt tggaaaagat ttgctagatt actcgattca atgtcaccat ggattaggct
     3061 atacaactat gaatgcaaaa tacagtagca ttgcaacgag taccacctat tatgttccta
     3121 aagatcaaac ctacgaagta tgggccataa ccttaaccaa tcattcaaac caaacaagaa
     3181 atctcactgt tagtggatat gctgaattta caaatcatgg gaattacgaa caggatcaag
     3241 taaatctaca atactctctt tttattagtc gaacaaaatt tgcgaccaat aaaatagttc
     3301 aacaactcca tggaaacctt gattccttga aagatgaaga tcaagttgat gaaaaaaatg
     3361 tcactgaaag attctttgga ttagctggcg ctcaaatatc atcttactgc ggcgataaac
     3421 aagaattctt aggatcctat aatggctatc acaatccaca aggaatcctt tcgggacatc
     3481 taggaaacat tcttaatacc agcgaaaatg cctgcggtgc cttatctagt caagtgattt
     3541 taaaaccagg ccaatctaaa acaatagctt tcatccttgg agaaaaaacg caagaggaag
     3601 cagatcgaat actccatcga ttcactaaca ctgaaaagga aatcaaagat gatctcctcg
     3661 cattaaaaga actttggaat agtcgattag caaatttaca agttaaaaca cctagctcag
     3721 aattcaattc aatgcttaac atttggaatg cctataactg ttacatgacc tttatctggt
     3781 cacgcgcagc ttcctatatc tactgtggat tgcgtaatgg ctacggctat cgagatactg
     3841 ttcaagatat acaaggtata atccacctac accctgaaat ggccgttgat aaaataaggt
     3901 ttatgctgtc cgcccaagta aacaatggag ctggccttcc acttgtaaaa tttacccata
     3961 atgctggaca cgaagatact ccagatgacc cttcatatgt tcaagaaacg ggacaccctg
     4021 cataccgagc cgatgatgct ctttggctct tcccgaccat ttataaatac ataactgaaa
     4081 cagggaatat tgactttctg gatgaagtta ttccatacgc aaatcatgga aaagcgacag
     4141 tataccaaca tcttcaagca gctattgatt tttcaataaa tcatctgggt ccacatggat
     4201 taccagctgg actacacgct gactggaacg attgcttgcg acttggagca aatggcgaat
     4261 cttcatttgt tgcgctacaa ttctattatg ccctttctat catcaaagaa tttgcggttg
     4321 aaaagaatga tacagcttat ttaaagcaaa tagaacaact tcaagaggaa tactattcga
     4381 aaattcaaca tctatgctgg gatagagaca gatttatccg tggcttcact gagaatgggg
     4441 aaaaaatagg gactcctgaa gcaaatgaag ctaatctttg gttaaatcct cagagttggt
     4501 cagttattag tggtttagcg aacccagatc aagcgaaact agctatgaat caagttttta
     4561 atcgcttaaa tacacaattt ggtgctattt tgatggatcc tccatatcat aaggaagcct
     4621 ttgatggagc acttgcagtc atctataatc aagggacaaa agaaaatgct ggcatctttt
     4681 cccaatcaca aggttggctc atcctagcgg aagccttatt gggaaacggc aatcgagctt
     4741 tcaactatta tttagaaaac tctccagccg ctcaaaatac tatagctgag attcgtaaac
     4801 tagaacctta ctgttttggt caatttacag aaggcaaaga cagtcctcac tttggtagat
     4861 cacacgttca ctggctaaca ggtactgctt caaccatgat ggttgcgagt gtagagggaa
     4921 ttctaggaat tcgaccaaca cttgacggta ttcgcttatc acctgccatt ccaaaagaat
     4981 ggcctgaggt acaaattact aaacagtttc gaggaaagac gctacatatt acaatctcta
     5041 atcctcataa aaaagaagct ggctgtagct ctctaatctt aaatggagta gaaattgatg
     5101 gaaactacat tgaccaatca ctactgaaag aggaaaattc aattttacta accctctaat
     5161 tcaaacttcc tccctcccca ctctttaaga gaatggggag ttttattatc cagatagcaa
     5221 aaagaaaaag accatcaaac gataatcttt tacaaataca atgttactta tgtatttttt
     5281 cagcttcttt tatcttacgt ggacctgttc catagcgttc cgcgtcccta tcttccttat
     5341 aaggtaaaaa ataagctgct gcaatataga gagcaatcag aaggaggaag gatttgccta
     5401 agaggagacc tgcaataaat atcgcgcgtg ttatccagga ttcccagccc aatttatgcg
     5461 ctatgccggc aagaacccca gatactatct tcccctgcct tactttatac aattcaattg
     5521 acatctttta ttcctttcac gtaaaagccc ccttgacctg tttgtacctt caagaaaagt
     5581 aaatcattgc cagatttttc aaactgatag ggactatttt tctttttccg gttaaccaag
     5641 acatgacctg attgcgactc aatctgcccc cgaattccct ggcctttgcc agtttgtaaa
     5701 gtcaagggag cctgagctag ttgcacatac aagtgttggg gataaccacc gcaagtcgtc
     5761 aagcgaatat cctgttgttt tttatccctt gaactgcgga tagaaatatc ttcaaatggt
     5821 aagtaatcca agcgagcatc tgcctgacca agttccaaat ccagcaccga catccattcc
     5881 tgaggcaagt tgattgtcaa acgacaggcc aagctactgt gaaaataaag cccctttttt
     5941 tcaacataaa gacgaggaag cttatcttct ggtgcatctt gattgtagca aatctccaca
     6001 ctaatctgat tgtttttaga cttagccaaa gttagacgtc cctcagataa ttttaaaaag
     6061 agtgattcaa tcccttcaaa actataagat tgtttcaatt tggaggaagc aaagacctta
     6121 aaacttggca aggtaaaatt caattttact ttttcttcca caaaaagaaa gtctggttct
     6181 tgattcattt ccttaaaaca ggcacgcgcc tcttccttgg tcaagacacc tttttcatat
     6241 aactcaatta agcgttcttc tctcttttgc gtcatagact cacctcaatt ctactctagt
     6301 atatcacatt tctccacaaa aaaatcagcc cgaagactga ttctctattc tttcaaagta
     6361 agtttgcccc tacacttccc acatcggtat ttttttaggt caatgcggcg cttgcgctgg
     6421 tagacttgtc cacaggactg acaggtatac agcaagcttg gcttggcagc ttgttccagt
     6481 ttgggagcat agtgcaggcc gtccaccgca gccaacaatt ccttgaaatc cctgtctccg
     6541 tgccgatagc ctttcttctc aaagtagaga tggtagtggc agagctcgtg gcggacaatc
     6601 ttccgaaaga cttctaaacc ttgctcctcc aaatgcttgg gattgaaatc caaatggcca
     6661 tcccttggaa aaaagcgacc acctgttgag cgtaatcgcc tgttccagat tgctacatgc
     6721 cgaaattcct taccgaagtc tcgcaaggag acttcttgca catacttatt cagatccatt
     6781 tggtttcaaa aggctaagac cgatacgatt tcgtttgata tccacttcaa ccacccagac
     6841 ggttacaatt tccccaactg cgagaacttc gcttggatgt ggcaaggctt gttggcgtcc
     6901 atttttatct cgtttgcgtt tgaccatgcg tgaaatgtgg accagaccat cctcgtggac
     6961 accgatgtcc acaaaggctc caaagtccac aatattgcgg accgtacctt gcaattcctg
     7021 tccgactacc aggtccttga catccaagac atcttgacga aggactggtg cttcaaagtc
     7081 atcccgtaaa tcacgacctg gcttgagcaa gtctgcgatg atgtccttca aggtttcctg
     7141 accgacaccg attttttctg ccgtatctgc gatagccacc tgctttaatt tttcctgcgc
     7201 agcctcatct aagtggtcaa tagctagaag ttctaacagg ttttccacag ccttgtaaga
     7261 ctcggggtgc acgccagtat tgtccaaaaa attagtcgca ttaggaattc gcaagaaacc
     7321 agctgcctgc tcaaaggcct tgtcacccag acgaggcacc tttttgagtt gctgacgaga
     7381 ggtcagagca ccattttcct cgcggtactt gacgatgttc tccgaaatgg tcttgttaag
     7441 accagcaatg tgagccaaaa gggcaggact ggccgtattg acattgacac cgacctggtt
     7501 gaccaccgta tcgaccacaa aatccagact ttcagacaga gacttctggt tgacatcgtg
     7561 ctggtactgg ccgacaccga tagacttggg atcaattttg accagctcag ccagagggtc
     7621 ttgcagacgg cgggcgatgg aaatggcaga gcgtttttcc acagggaggt ctgggaactc
     7681 gtatcgcgcc agttcagaag ctgagtaaac agatgctccg ctttcattga cgatgacgta
     7741 agaaacatct gggaaatcct tgagtaaatc agcgacgaaa gcctccgatt cacggctggc
     7801 cgttccattt ccgatagcaa tgatttccac ttggtattgc ccaatcaggt ctgccaagtc
     7861 tttttttgcc tgagcaattt gtcgctgacc agccggctcc acaggataga tgacttgtgt
     7921 agtcaagagt tttccagtct ggtctacaac cgccaactta gcccctgttc gaaaggcagg
     7981 gtcaaaacca aggacaatct tgccttttag aggagataca aggagcagat ttcgtaggtt
     8041 tttagagaag agctggatag ctccttcttc tgcttcttct gtcaattctg tccgaatacg
     8101 acgctccatg gcaggtagaa ttttcttctt aatagcctgc tggatcacat ccttgatgta
     8161 gctattagac tgtggaaaac gtagctcaaa gaaacgaacc attttatcca cattgtgttc
     8221 aaaagaaacc ttgagaacgc ctaatttctc accgcggtta atagccaagg tcttgtagcc
     8281 ttgcatcttc gccactttct cagagaaatc ataataaatc tgaaagactt ctttttcatc
     8341 tgcttcttga tcttttagct ctgaagtaag gcttgaattg gtctgtactt catggtagac
     8401 ccaggcccga agcttattgt cttctgagat agcttccacc aaaatatcca cagccccagc
     8461 caaacaagcc tgagcagtat caaaaccttc acagatgaaa ctagcagcct gttcttccaa
     8521 gtcagccaca ttctgcaaaa ttagacgagc cagcgggaac agtccagcct cacgcgccac
     8581 cgttgccttg gtccgacgtt tttccttata aggcagatag agctcttcca catctgccaa
     8641 cttttccgct tcctcgatag cctgacggag ctggtctgtc aattttcctt gttcttcaat
     8701 cttggcaagg acagtagcct tacggtcagc gagagcagtc aaggccttat cccgatcaat
     8761 gatagacttg atgaccacct cgtccaagtt ccccgtcaca tccttccgat aacgagcgat
     8821 aaaaggaatg gtgttgcctt cagccgtcaa agagagaacc gtatcaatct gttttaaact
     8881 aacgcccaat tcctgagcaa ttttcaaata tttttcttcc atagctacta ttatagcatg
     8941 aaagcggtac aaatggctca atagaaaaag cacgtagata aactacatgc tctcaatagc
     9001 taattaaaat tcagcctgat ccgggtcaag tcgacctttt actccttcta gtttatccaa
     9061 ctttgcaact gctgtcggac taatagccaa gccatcaatt tccaaattcg ccttaatatt
     9121 ttctggacta gttgatttcg ggagagggag aaagccttta tctaaagacc aagctagtgc
     9181 cagctgagca acactacaac cagcttcttt agccaaatca gctgcttctt ggctttggaa
     9241 aaggcttcct gtaccaaatg ggctataggc ctccaagaga atccctttgg ctttgcagta
     9301 agcaactaat tctgactgag gagttcctgg agctaacata atctgattag ccatcgggat
     9361 aatctcagcc gtttccagca aagcttctag atgatgttcc ataaagttag aaactccaat
     9421 tactttcact tttccagcac gatagagctc ttctaatgcc ttccaaactt gggcattgcg
     9481 ttccttccag ccaatgctgt cgcgaatagc ctttggattt ggccaatgga tcagtaacaa
     9541 atccagataa tccacctgaa gtttttgcat ggattcttct actgaagcaa gggtatcttc
     9601 atagccaatc ttgtcattcc aaaccttagt tgttaaaaaa atgtcctcac gagctagacc
     9661 actatcagct atagctcgac caacactagc ttcattgcca taaatttgag cagtatcaat
     9721 atggcgataa ccagcttcca atgcataaga aaccgcaccg tacgccactt caccatcggg
     9781 tatctgccaa gtaccaaaac caattttagg aacagttaca ccatttgaaa acgtatatct
     9841 tgtcataaaa gacctcctat ttcttctatc cccagtataa actaaattgt caatcaatac
     9901 aaaataatgc gacctaaaaa taaaagacac ccgaaagtgt ctgctcacat ttattgtata
     9961 cttacttttc aaaatttatt ttcttggata gtttatcgat aacaacagct ccaactaata
    10021 gagaaagcaa ttctcctgct gctgttgtca accaagttag aaagaatggt agatcatata
    10081 agacttttaa ttctaaagca atggtaaaca tagttgccgc aaaaaagaat gagaaataaa
    10141 agaaagcctt gttaaataat ccaccgaata gatagtcctt cttgtatttt tcaaacagaa
    10201 taactcccaa cgtaacgaaa attaatgtcg agaatccacc cacaaagagg tcaatcacac
    10261 caaaaccaat caagttggaa atcatgcagc caatggtcac agcgataata tacttacgat
    10321 tataaaaagc caagaaattg agcatttcag acaaacgaaa ctgaacagcc ccgaaggaaa
    10381 tagcattcaa tggcggtgtc aaggtaagag cgacataaat cgccgcaaca agagcaattt
    10441 ctgccatatc tctggcagtc catttagatg tattcataaa attctccttt agcaaaaaag
    10501 cttaaaatat gcttgggtaa agtgagcaag tcccaagggt cattgaattt gtcaacaacg
    10561 ttgattagta tagcatattt ttgctaaaaa tgatagacta gtcctatgaa aaaactattt
    10621 tatcaactca tcaataacga agttattctc tatttgattg caggtgtggc agcaaccctt
    10681 gtctatatgg tcactcgaat ggggctattt ttagtcattc cttccattct attggttact
    10741 cttttagcca atgcagtagc tatcctcttt gccttttgga ccaacgaccg tttcgttttc
    10801 aaacaagcca gagagggttg gcctcagcga ttggtcaagt ttgtatctgc ccgcatcgcg
    10861 accttggtca tggatatggc tctagcctat ttattagtac aagcctaccc acaattgatt
    10921 gggcagtttg tcaaccatga tttgacactt gtcaacgcca tttccactct cttctctcaa
    10981 gtcttggtca ttgtcctaaa ctacgtttta agtaaattat ttgtatttaa agataagaaa
    11041 taaggttggg caaaaagacc aacctcgctt ctcagagttc gtgtcaacat ctcagcgcag
    11101 tggttgattg gcagatttgt tcgcgtttca cactccaaat ctggcctaat caactgtgcg
    11161 ggggtgagaa gacgaactca tttttgaaaa tagagttctt tctcactccc attctttatc
    11221 tatcgctgta aatcttgcct ttagcctatt caagattgaa acaatatccc catctctggc
    11281 atgaaactct tctacctgca tactttgaac cgtagcatta atcattgcac caatgatgag
    11341 tacctgagcc ataaaaatga accaaagcat aaaaacaaga aagacgacag ctgttactat
    11401 tctaaaatcc agcaacttat tagcataatt atcaacataa atcgaaaata actttccaat
    11461 agaagtcatc gtcaacagaa caaacaacgt tcctggaaaa acatatcgaa ctttttttat
    11521 ccgaacattt ggcaaaaaga aataaagcat aaccaaggcg gcaaacagag ccattaaacc
    11581 tactaactgt gtttgactaa gaagtccctt cagccaggcg tcttcaatag gaaccagctt
    11641 attaatataa gaaaaaactg cctgcccgaa agtcaaaagc gtaatactta agaggataat
    11701 tacctgcaga ccaattccta aaaatatgcc aatcaagtgc ccaataataa aatcacggtg
    11761 ttcattgata ccataagcct tattaaaggc cttctgcaaa atagtcatac tacgtgacag
    11821 ggtccaaaga gttgtcagaa ttgaaatccc taaccacgat gacgacggct ttgttaatac
    11881 agaagtgata aaagatgaaa ccgaaggata gagcttgtct ggcacaaatt cagctacaac
    11941 cgataaaatc atatccacat caaatggata atatggcagt aaattcgcaa gagttagaag
    12001 aatagggaaa atagaaatta ataaatagta agctactgca acgcttgtta catcgctatc
    12061 agcagaacga taaaaagaaa agaaggttga gcagaatgtt ttcaaacctt cgactatttt
    12121 ggttttcttc attctctcct ccttcctcat tcatctatta ttcacgacca caccgagaat
    12181 taataggtcc cttcttcacc ttgactggtc aaaataaccg gtccatcttt ggtgatgaca
    12241 aattggtgtt cgtattgaca agacaagcca ccatcaagtg tcttatgagc ccaaccagtc
    12301 ttcatatccg tatcaatttc ccaagtccct gtattaatca ttggctcaat agtcaaaacc
    12361 atgccctcac gcaagcgaag accacgacct ttagttccat aatgaggaac catcggctct
    12421 tcgtggaagg ttggtccaac gccgtgaccc accaagtcac gaacaacacc gtagcccaaa
    12481 ccttctgcat attcttgaat ggctgcaccg atatcgccga tacgattgcc aacaactgct
    12541 tgctcgatac cgcggtacaa acattcctta gtcacgtcca tcaagttttg aacttcctca
    12601 gagacctgac caatcgcata agcccagcag gaatccgcac aaccaccacg ataggtctgg
    12661 gtgattttct tcatagcctt gacatcatta aagttgagct tagaaacatc aactaccgct
    12721 ttatccaaag gctcgctcaa aaccatatcg accttcagta aatcaccttc tttaagtttg
    12781 taatgacgcg gaaaggcatg agcgacctcg tcattcaatc cacaacaagt cgcataagga
    12841 taatccatca attctccatc aacaccaatt tggagtggca aaacattctt ttccttacac
    12901 gttttacgga catattcctc tacttcccac atgtccacac ctggcttgat aatctctcgc
    12961 aaaccaatat gaataccagc cagaacatct ccagcacggt tcattgcatc aatttctcgt
    13021 tgtgatttaa tggtaatcat tcattctcct catacatttc taaactaaat tcagccctct
    13081 tcaagctaaa ttttagataa tttcttgttt tatggctata gcggtcactt ccacgatact
    13141 gcgcaacctg taccaaacca gcttttttcg ccaccatctg actggccaca ttttcctcat
    13201 gagtgacaat aaccagctcc ctcagaccaa actcataaaa agctagatag actaaagtcc
    13261 tcactgcttc cgtcattaag cctcttctcc agtagtcttt ttttaggaaa tagctgagct
    13321 ccgcagaaag ttgacgttca tctacctttt caaagcaaag cgcaccaatc atcctctccg
    13381 aatacttatc aactaaggcc cagtttccca atggtgaacg cataaatttt tcaaccattg
    13441 tcgaaaaagc aatatttctg tcctccaaag ctggaaagat aaaaggaaga ttttcgggat
    13501 ttgctacaat ttcatagaaa ctttctccat cttcaaaaga aaatggtcgt aaatacaaac
    13561 ggtccgtttc aaagtaagca aacttcgcta gtcttgtcca aagtgtcata gtgtacccaa
    13621 ggggctgaga attactccca gccccagatt tttttgtttt taaatcgttt acgttttgag
    13681 aaagtagttc tcaattagac tctctaatcc tcaatcaact gaatatctgc acccaattct
    13741 gtcagtttat caataatatt tgagtaacca cgtagaataa actcaatatt tgtaatttct
    13801 gtacgccctt gagccattaa accagcaata accattgcgg ctcccgcacg caaatcggta
    13861 gctttaacag atgtaccagt cagttgattt ggaccttcaa aggcaatatg gttgttacga
    13921 gtagagattt ttgctccaag attagcaagc tcctgcacat gaccaacacg tttttcataa
    13981 atcgtatcaa caatcgtacc agtcccttct gccttaagca ataaaggtgt aatgggttgc
    14041 tgcaagtctg tcgcaaaacc tggataaggt gaagttttca cacttaccgc cttcaatttc
    14101 tcttgctttt caacaaaaat actatcttca gaaatggtca tgcgaacacc catttcttcc
    14161 aacttagcga tgtaactctc taagtgttca taaaggacat tatcgatacg aataccttca
    14221 ccaacagcag cagcaagggc aatataagtc cctgcttcaa tacggtctgg aatcacttga
    14281 tgacgtgttc cttttagact gtctacgcct tcaatggtga taatatctgt acccgcacca
    14341 cggatacgtg cccccatatt attaagcaac gttgccacat caataatttc aggctcacgc
    14401 gccgcatttt caataactgt acggccttct gctttgacag ctgctaagat agtattaatt
    14461 gtcgcaccga cgctgacaac atccatgaag atatgggccc cttgaatacg ctgaccatta
    14521 gttgccaagc gcatatagtc accttcataa gttgtctcag ctcccattgc cgcgaatgct
    14581 ttcaagtgca aatcaatcgg acgcggtccc aaatcacaac cacctggcaa gccaacaaca
    14641 gcttgaccaa agcgaccaag gagggaaccg taaaaatagt aggatgcacg caagctatta
    14701 attttgccaa atggcatagg catgtctttt acaccacgag ggtcaatctc caaggtttca
    14761 ccatcacgct tgaccgtcgc gcccattgtt tccataatat caactaagct atctacatcc
    14821 gagattgcag gtactccgtc cagagtaaca atcccgtctg caagaataat ggccggaata
    14881 agagcaacaa ctgagttttt tgcaccacta acggtaaccg accctttcag tgtttttcca
    14941 ccattaatta caatttttct catactaaca ttcactttct taatttgcct aaaaaggcat
    15001 acgtttcatt ctatcataaa gtcttggaaa aagctagtta tatagcatgc aaaaggaccg
    15061 agccaatgag ctcagttctt catatttaca tactattagt gaatctctct tcataattta
    15121 tgaaaaattc tctgaatttg ctcccttgca tccacgagat acaactccag ctcttctctc
    15181 gttaaataag gtactcgccc atagaagata tggtcaatga cttgagcacc gttgctattg
    15241 aagagccatt ctgaggtcaa gcttttcatc gcttgatcaa tcggtgtcag acttccatct
    15301 gcattttgtg gctgccctgt tggcgtaaag aaaatagctt tcttagtgga aaataattta
    15361 cgtggttcat cagattcaaa actgtaagca aagccatgtt gaaatacacg gtcgacgtac
    15421 cctttcataa tagcaggcat tccattccac caactcggaa atatgtagac tagtaagtcg
    15481 ctttcggcaa tcaaatccat ttcaacttga acatctgctg gaaaaaccgt tgcctgacgt
    15541 ataaatttgc catcttcaat atgaatggta tcttctccac gtaacacggg atcgaatcct
    15601 atttcgtata aatctcggat gacaacttct gctccatttt ccagcagagc ttccgccact
    15661 ctatcaacca aagcatgtgt aaagctttct tttctagggt gtgcaaagac aattaacgct
    15721 ttcataaact tctcactaaa tggacaacta tttcattaca aaaccgcagt tttcaacgcc
    15781 tctaccttgt ctaatttttc ccaaggtagg tcaatgtcgg tccggcccat gtggccatag
    15841 gccgcagttt gtctgtaaat cgggcgattg aggtccagca tctggataat acctgctggc
    15901 cgcaggtcaa aaatctgacg gacagctgct tctagtttgc tttccgctac tgtgctcgta
    15961 ccaaaggtat cgatgcgaac tgaaactggg tgagcaacac cgatagcgta agccaattga
    16021 acttccgcct ttttagccaa accagctgcg acgatatttt ttgcgatgta gcgtgccgca
    16081 taagatgcag aacggtccac tttggtcgca tccttaccag agaaggcacc gccgccatga
    16141 cgagaataac caccataggt atcaacgata atcttacggc ctgtcaaacc agagtcccct
    16201 tgaggtccgc caatgacaaa gcgaccagtt gggttgataa agtagttggt ttggtcatcc
    16261 agataatgag ctggaatgat ttccttgatc acacgttcaa tgacatcctg acgaatttgc
    16321 tcctggctaa cttctggatc atgctgggtc gaaataacga ctgtatccac acgaacaggt
    16381 tgattgtctt catcgtattc aactgttacc tgtgacttag catctggacg gagataagca
    16441 atttcaccag attttctcaa ctcggccaaa cgacgcacca atttgtgact aagtgaaatt
    16501 ggcaacggca taagttcagg cgtttcatct actgcaaaac caaacatgag cccctggtca
    16561 cctgcaccaa tcaaatccaa tggatcttga ctagcatctt gacgagtttc taaagcttca
    16621 ttgacgcctc gggcaatatc tggcgattgc tctacaagtg acggatgaac cccaaccgac
    16681 tcagctgaaa aaccatactc accttttgta tagccaatct ccgcaatggt atcccgtacc
    16741 acacggttaa tatccacata ggcagtagtt gaaatctctc caaacacatg aacactacct
    16801 gtataaacag ccgtctctgc cgctacgtgc gcatctggat cctctgctaa aatagcgtcc
    16861 aaaatggcat ctgaaatctg gtctgcaatc ttatccggat gaccctccga aacagattca
    16921 gacgtaaaca acttacgttc tgacataaaa atgtccccct taaaatagaa tatatgctag
    16981 aaacctagcg ggttactaag gttacaaaga actagtcgaa gactagttct ttgcgaaaga
    17041 cacctgtctt aagcaaaggg aaatttccag atactcaacg agaaagacaa taccagactg
    17101 tatgaaatca gccttatttg aagaaaatgg tgactgaagt gtagtaaagt ttttacgctt
    17161 actattcaat gttaccagct tctttaattg tgtttcaagt atttctgcaa atattaacta
    17221 gtctataaac taccttttcg ggacttaata acgtttctag tatagcatag attgaccgac
    17281 tatcctagca ttttcttaaa aataaagagg aggctgggca aaaagcccag gaccactact
    17341 cagagttcgt gtcaacatct cagcgcagtg gttgattggg tttaacagtc tagtggactg
    17401 ttaaaggttg gagataagat ttgcgaagca aatctcagca gttcgtgttt tacactccaa
    17461 atctgaccat tacgactgat gcgaacagag ttcgcttcat ttccaacctc caacagtcac
    17521 tactctgact gttggagcta tgcgggggtg ggagtgaaac agtctgagga tagactgttt
    17581 cagctcaaca acttaaaacg aaaaattgtt gacgaactct tctatgaatg gtcgagttct
    17641 ttctcactcc cactcttcta caaaatcatt agataaattc ggtatctgca attgcctgtt
    17701 taaccacctc tagaggcaaa tgaaccaact cacagccctt ttctttatac aagtactgag
    17761 catagtcatc catgcggtat tcattgatat aaacaacccg cttacaacca acctgtaaca
    17821 attgcttgga gcagttgaga catgggaaat gggtcacata ggcagtaaaa ccttttggaa
    17881 ttccccgctc cgctccttgt aaaatggcat tgacttccgc atgcaaggtt ctagcgcaat
    17941 gaccatcaat cataaggcat tcctgatcca aacaatgttc ggttcctgaa acagaaccat
    18001 tgtagcctgt tgcgataacc ttattgtcct taaccaaaac cgcaccgacc ttggctctct
    18061 tacaggtcgc ccgattggca atcaaaagtg cctgagccgc aaaatactca tcccaagcta
    18121 aacgatttgt tgacatgatt tctcctttat atatttttat aaatcactgc tcaccaccaa
    18181 ctatttgtgc ttttaaaaat gataaaaagt tgattcattg aatgaatacc ttggatgcat
    18241 aaacacttga ctatgtgaac caagtaactg taaggtattc aatgatttaa taaactttaa
    18301 tttttcattt ccaatttcca ttatgaaatt gtcgaaatgt ttacaattgt cattctgagg
    18361 caatagctca agcaaaaccc tacttgtcaa aggataataa ataattgtat ccctccttcc
    18421 aatcccaaca tcttctcggt taattgaatt ggtagtaaag ttatacatta gcgcaggatt
    18481 atcgctagtc acaaatggaa cttcggaatt attgacgtaa aataaccatg ttctattctc
    18541 aatatatttt gctaatctat ccaacatatc atgctgagca atcaactcta tcgtaatatc
    18601 ttttattaaa ttcttacgct ctctttttaa atcctctaat acctctatat ttttagaaat
    18661 aaactccata ggcattagtt gtatcaactc cctaattgtt tcatcaaaaa tcacttctcc
    18721 gttttgaaat cttcctttca aaaattttgg tactctgatt atttgaaata caatcatcat
    18781 tgctaaagaa aacttctgac ttggatttaa cacgttctcg ttcgaattag aaagcataat
    18841 gctagaaatt atatttgtta gctcattgcc gtataagggc tcaatgtgtg ttgcaaaatg
    18901 ctcttcccaa tattttgtat tttctttatt ggttacgtca tagtaatttt tttcgaaagc
    18961 aacatttttg accgcacaat taaactgtct attatttgct ttttgataga cagatatatt
    19021 tgctccgcta ttgttgacat tcttttgtgc aaattttttt aaatatgctt gaggaactat
    19081 gtgttgtcta actctatgct tttccatcca cttaatcttc cttaaaaagt tttataatga
    19141 aattctgttt tttacttgat tagcccattc caactaaatt ccgtctttta ccagtggata
    19201 aatcaaaaga ttctgttcag cgaatgaata tttcagccta ttattttaga aaaaatgtga
    19261 gaccgtcttc ataacaaatc atatattaat catagtcacg tttgtatctt tcatctattc
    19321 tcttttcaaa ccgatacccc ttgatttcta gcaaatcaag ccgtgattga atctttttta
    19381 taacagtgtc ttcataatct tcaatttca
//
LOCUS       DASGCC010000027        19013 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.027, whole genome shotgun sequence.
ACCESSION   DASGCC010000027 DASGCC010000000
VERSION     DASGCC010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19013
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.027"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            167..2656
                     /locus_tag="U1404_000657"
     CDS             167..2656
                     /locus_tag="U1404_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase/3'-nucleotidase"
                     /protein_id="HEM5347635.1"
                     /translation="MKFRFSKCALTLSLALLASTNNALVSAEETSTDTPVLKTETEIS
                     SSVATSQAEATTGEVATPTTTETTAGEAVTPTTETTDQSVTPVTEEAAPVVETSNTPV
                     NDTTASPVTATRAAATETTTPVEGQSVDVRILATTDLHTNLVNYDYYQDKPVETLGLA
                     KTAVLIEEAKKENPNVVLVDNGDTIQGTPLGNYKSIVDPIEEGEQHPMYAALETLGFD
                     VGTLGNHEFNYGLAYLEKVIRTANMPLVNANVLDPTTKDFLYTPYTIVKKTFTDTEGK
                     KVTLNVGVTGIVPPQILNWDKAYLEGKVIVRDAVEAVRDIIPTMRENGADIVLVLSHS
                     GIGDDQYEVGEENVGYQIASLSGVDAVITGHSHAEFPGTAEKPSFYAKYSGVDDTNGK
                     INGTPVTMAGKYGDHLGVIDLNLVFKDGKWTTTSSKAAIRKIDTKSSVADGRIIDLAK
                     EAHNETINYVRQQVGETTAPINSFFALVQDDPSVQIVNNAQIWYAKQQLAGTSEANLP
                     ILSAAAPFKAGTRGDASAYTDIPAGPIAIKNVADLYLYDNVVAILKVNGAQLKEWLEM
                     SAGQFNQVDPSSTEPQNLVNTDFRTYNFDVIDGVTYQYDITQPNKYDRNGKVVNETAS
                     RVRNLQYNGQDVTADQEFIVVTNNYRANGTFPGVREASVNYLLNLENRQAIINYIIAE
                     KVINPTADNNWTFTDSIKGLDLRFLTADRAKELVANQEGLVYLQASAENEGFGEFKFV
                     YTEPKVATPDEQQSDQGNTGQDIVLESGQRITLPAVNPPAPAPQHKLASPHSQASTKT
                     LPATGEATSMLSLLGLTLIGFVGAWTKKKEH"
     gene            complement(2777..3334)
                     /locus_tag="U1404_000658"
     CDS             complement(2777..3334)
                     /locus_tag="U1404_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347636.1"
                     /translation="MKRLSTPIFAALGFFLIVFVALNQFGRVPGTSYQIISELVLYNQ
                     ATEQTYEFENHEVRKAFIRQLSSTSSRGFQASDSRTSLETTYHETIMSENLISSIYGG
                     EEGRIMEFSRPRKSTLGNLVFASESVSYLVFARKYGNIRLETTILCQEFRVEQRLANQ
                     SNWVDLGTYTVKSPKETRYVPIYWE"
     gene            complement(3575..4290)
                     /locus_tag="U1404_000659"
                     /pseudo
     CDS             complement(3575..4290)
                     /locus_tag="U1404_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
     gene            complement(4300..5562)
                     /locus_tag="U1404_000660"
     CDS             complement(4300..5562)
                     /locus_tag="U1404_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347637.1"
                     /translation="MSELEQKEHRELIVSDDCFALIQKMSELDSSAYQRYEITNPNIL
                     AHVEKIVQPALKHHLKKAGQPNIPKGLFKVDLPIGDLHKIKGETDKYRAFVKGAEGKF
                     KAHAILTPAQVEIAKGAKAAAAVSGAMQVAAMVVGQYYMAEINGQLDSMKETLNDVKD
                     FQVREFKGTVRALIVNISQLSKFSADYVENAELARLKLMECANFRAEVTKLLEQVNLA
                     IEESITKGKGLSFEKYEQLIDKLSTNLFYQQTLLRLLAELSKLDLVFSQGVASEDSSY
                     YVYEYYLNNCNSLGEKIANWHKDKIKFFQIDTKRNRRTQEGPMKVVADIAKELDKNAH
                     VAAGVGFLGGLVGAAAGFGIGKAAGELNKAIRYIDVRKRTVKLISEQETVSYQSSKRL
                     SVNNYGENVKLLVEDGKVYYLLPDDSES"
     gene            complement(5576..6322)
                     /locus_tag="U1404_000661"
     CDS             complement(5576..6322)
                     /locus_tag="U1404_000661"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEM5347638.1"
                     /translation="MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDD
                     GIKRLARVVDSQNQSVEIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAA
                     LWAFPADWSVVKWDGKKLGKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLA
                     GFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAV
                     KTGLGPRILRAETAPLYALSAISYATELLR"
     gene            complement(6324..7277)
                     /locus_tag="U1404_000662"
     CDS             complement(6324..7277)
                     /locus_tag="U1404_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001099287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEM5347639.1"
                     /translation="MNSWQELTIHVHRDAEEAVSNLMIETGSQGVAISDSADYVGQED
                     RFGELYPEVEQSDMIVITAYYPDTVDIEEVKADLATRLADLTGFGLETGQVSLESQEL
                     AEEDWADNWKKYYEPARISHDLTIVPSWTDYEATAGEKIIRLDPGMAFGTGTHPTTKM
                     SLFALSQVLRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNA
                     NTSNIHVAAGDLLRGVDIKAEVIVANILADILIHLTEDAYRLVKDEGYLIMSGIIADK
                     WDMVRASAEAAGFFLETHMIQGEWNCCVFKKTADRSGVIGG"
     gene            complement(7873..8226)
                     /locus_tag="U1404_000663"
     CDS             complement(7873..8226)
                     /locus_tag="U1404_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM5347640.1"
                     /translation="MVHEMLLAPKPFEMMKSGQKTIELRLYDEKRKHIQIGDRIRFYC
                     TENQTQTIEVQVLDLHIFDNFAQLYKELDLLSCGYTQSSIRGAKPEDMEDYYSREQLE
                     QYGAVGIELRVIDSI"
     gene            complement(8228..8698)
                     /locus_tag="U1404_000664"
     CDS             complement(8228..8698)
                     /locus_tag="U1404_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3013 family protein"
                     /protein_id="HEM5347641.1"
                     /translation="MAKHGFLDVLEAALDKHFTYDYELNWDKKNHAVELAFILEAQNV
                     AGIETVDDEGNASSEDIFLEEYVLFYNQDKSRFDEEDYLVALPFDAKKGFSAEFLTYF
                     AGFLKDTADQGLDDLMDFLVDPEAQDFAISWDGEAFEKGRADLLEGEFYPYPRY"
     gene            8772..10058
                     /locus_tag="U1404_000665"
     CDS             8772..10058
                     /locus_tag="U1404_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEM5347642.1"
                     /translation="MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMIL
                     YGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRLQEIAEEAKFSGGLVLMLDEIHR
                     LNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
                     LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDL
                     DAVENSLQKSYISMDKNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLAR
                     RLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVIDLALSPKSNSAYL
                     AMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKL
                     LAADYFTANDTGKYERALGMTQEKIKNLKKNRRQNP"
     gene            10160..10353
                     /gene="ssrS"
                     /locus_tag="U1404_000666"
     ncRNA           10160..10353
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="U1404_000666"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            10362..10434
                     /locus_tag="U1404_000667"
     tRNA            10362..10434
                     /locus_tag="U1404_000667"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10395..10397,aa:Lys,seq:ctt)
     gene            complement(10539..11096)
                     /gene="nrdG"
                     /locus_tag="U1404_000668"
     CDS             complement(10539..11096)
                     /gene="nrdG"
                     /locus_tag="U1404_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HEM5347643.1"
                     /translation="MNNPKPQEWKSEELSQGRIMDYKAFNFVDGEGVRCSLYVSGCLF
                     HCEGCYNVATWSFKAGIPYTKELEDRILADLGQPYVQGLTLLGGEPFLNTGTVLPLVK
                     RIRKELPEKDIWSWTGYTWEEMMLETPDKLELLSYLDILVDGRYDRTKRNLMLQFRGS
                     SNQRIIDVQKSLQEKRVVLWDKLKK"
     gene            complement(11283..11777)
                     /locus_tag="U1404_000669"
     CDS             complement(11283..11777)
                     /locus_tag="U1404_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347644.1"
                     /translation="MELRRPTIADKETILEMLAEFEAAGSAMDGGFISKDVDFEEWIF
                     RNKDYEAGLNLPDGFVPSIQYVSFDQTGRALGFLSLRLRLNDFLLNKGGHIGYSIRPT
                     ERGKGYAKDQLRLGLQEAATKNISKVLVTCSTDNQASRRTIVACGGVLEDVRDGVERY
                     WIED"
     gene            complement(11779..12884)
                     /locus_tag="U1404_000670"
                     /pseudo
     CDS             complement(11779..12884)
                     /locus_tag="U1404_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939128.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphatase"
     gene            complement(13113..15284)
                     /gene="nrdD"
                     /locus_tag="U1404_000671"
     CDS             complement(13113..15284)
                     /gene="nrdD"
                     /locus_tag="U1404_000671"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEM5347645.1"
                     /translation="MNVQENVLPSIELLVLKRDGRTVSFDQDKIFSALRRANQELEHP
                     VSEAGLKIVLEAVLAEIGRRFEKDVQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRD
                     FRRHQATDINFEIHKLLSKDQSVVNENANKDADVFNTQRDLTAGIVGKSIGLKLLPAH
                     VANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLAQGFKIGNADVESPKSIQTATAQ
                     ISQIIANVASSQYGGCSADRIDEVLAPYAELNYQKHLKDAKDWVLPDKQEEYARAKTQ
                     KDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFEREIQKAILNIRIKGLGREG
                     RTAIFPKLIFTVKRGLNLEPDSPNYDIKQLAIECATKRMYPDMLSYDKIVELTGSFKV
                     PMGCRSFLQGWKDENGQDVTSGRMNLGVVTVNLPRIAMESAGDKDKFWEIFVERMAIA
                     KDALVYRVERVKEATPANAPILYQYGAFGKRLAKTDAVDEVFKNRRATVSLGYIGLYE
                     VATVFYGGEWETNPEAKDFTVDIIKKMKALVEDWSDEYGYHFSVYSTPSESLTDRFCR
                     MDTEKFGIVKDITDKEYYTNSFHYDVRKNPTPFEKLDFEKIYPAVGASGGFIHYCEYP
                     VLQQNPKALEAVWDYAYDRVGYLGTNTPIDHCYACDFEGDFEPTERGFKCPNCGNSDP
                     KSVDVVKRTCGYLGNPQARPMVKGRHKEISARVKHMNGSSL"
     gene            complement(15590..16333)
                     /locus_tag="U1404_000672"
     CDS             complement(15590..16333)
                     /locus_tag="U1404_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5347646.1"
                     /translation="MIKIRNLVKEFSGQKVLDGIDMDIEKGQVIALVGPSGAGKSTIL
                     RSLNYLEQADAGSIEIDGFTVDFTNISKEEILTLRRKLAMVFQQFNLFERKTALDNVK
                     EGLKIVKRMDDASATALAKEELRKVGLSERENHYPRHLSGGQKQRVALARALAMQPDI
                     LLLDEPTSALDPELVGEVERSIADAAKTGQTMILVSHDMNFIYQVADKVLFLENGRIL
                     EQGTPEELFHHPKEERTREFFASYSNPQF"
     gene            complement(16333..17136)
                     /locus_tag="U1404_000673"
     CDS             complement(16333..17136)
                     /locus_tag="U1404_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5347647.1"
                     /translation="MIGVLGITGPAWYQGFLEWLPDGKLFSIRAVFDALPSIIERLPI
                     TIGLTLAGAFFGLILGLVFAIVKINRVRFLYPVQAVFVSFLRGTPILVQLMLTYYGIP
                     LVLRGLNQEYGLDWNINAIPAAVFAITAFAFNEAAYMSESIRAAIQAVSPGEIEAARS
                     LGMTSGQVYRRIIIPNAAVIATPSLINTLIGLTKGTSLAFSAGIVEVYAQAQIQGGAD
                     YRYFERYISVSLVYWALSVLIESFGRFLENKMAIQAPESVDISGVGGDR"
     gene            complement(17322..18173)
                     /locus_tag="U1404_000674"
     CDS             complement(17322..18173)
                     /locus_tag="U1404_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5347648.1"
                     /translation="MKLRTILSLAGITALATVALAACSSTSNSSNTSSSEADKKETIV
                     MGTVGTTKPFSYRDENGELTGFDIELARAIFDGSDQYELTFETTDGSGQFPGLDSGRF
                     DLLGNNTSYTKERGEKYLYSYPTASTPSVLAVPKDTDIQSYDDIGGHSTQVVTGTTTA
                     AQLEEYNTQHTDKPVDINYTGENITQILTNINDGKYDFKIFDAPTVNAIIADQNLTNL
                     KTIELEAAEKPFIYYVFSSDNTALQSFVNDRIKALNEDGTIAKLTEQFFGKDYAPTAE
                     ELAVPNE"
     gene            complement(18206..18892)
                     /locus_tag="U1404_000675"
     CDS             complement(18206..18892)
                     /locus_tag="U1404_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5347649.1"
                     /translation="MGKPIIGITSNEKPVAEGIPIMNLSLSRNFADGIKRAGGLPFYI
                     PLSGETDVVDYVSAIDKLLLTGGQHVLPQFYGQEKLIESDDYFKERDEFELKLVHEAL
                     RQEKPILGICRGMQLFNVARGGTLKQAVEGHRSLPFDLIHQVECKEATPLASIFGQRV
                     AVNSIHSQAIENLGQGLEAIVHSVDDGIIEAVRSMDETRFLGVQWHPELLIDQSGGNQ
                     KLFDYFVQTL"
BASE COUNT         5432 a         4654 c         3625 g         5302 t
ORIGIN      
        1 cgataaacaa agaaaaccag acaaacaatt ttttagtcat tgttcgtttt ttgttgcttt
       61 tatgaaaatt tttctttatt tttcttttgt gttttcgtag aaaccgttga tgttttcgtt
      121 ttcaatatgt ataatattct tgagattata tcaaatggag gttctcatga aatttcgttt
      181 tagtaagtgt gccctaaccc tcagcctagc tttactggct agcaccaaca acgcccttgt
      241 ctctgctgaa gaaaccagca cagatacccc tgttttgaag actgaaacag aaatcagtag
      301 ctctgtagca accagccaag ccgaagcaac gactggtgag gttgccacac cgacaactac
      361 cgaaactaca gccggtgagg ctgtcacgcc aactacagaa accactgacc agtctgttac
      421 accagtaaca gaagaagctg ctcctgttgt agaaaccagc aatactccag ttaacgacac
      481 aacagctagc cctgttacag caacacgcgc agcggctact gagactacaa ctcctgtcga
      541 aggccagtct gttgatgttc gtatcctcgc aacaactgac ctccatacga acttggtcaa
      601 ctatgactat taccaggata aacctgtaga aacactgggt ctagccaaaa cagctgttct
      661 tatcgaagag gcaaaaaaag aaaatccaaa tgtcgtattg gtagataatg gagacaccat
      721 tcaaggtact cctcttggaa attacaagtc tatcgttgat cctattgaag aaggtgaaca
      781 acatcctatg tacgccgcct tagagactct gggatttgat gtcggcacac ttggcaacca
      841 cgaatttaac tacggccttg cctacctcga aaaagtaatt cgtacagcca acatgcctct
      901 agtcaatgct aatgtcctcg atccgactac aaaagacttt ctctacaccc cttataccat
      961 tgtgaaaaag acattcacag acaccgaggg taaaaaggtt acactaaatg tcggtgttac
     1021 agggattgtt ccccctcaaa ttcttaactg ggacaaagct tatctagaag gaaaagtgat
     1081 tgttcgtgat gcagttgaag ccgttcgcga tattatccca accatgcgag aaaatggcgc
     1141 agacatcgtt ctggtccttt cccactcagg tatcggggat gaccaatatg aagtcggcga
     1201 ggaaaatgtc ggttaccaaa tcgccagctt gtcaggagtt gatgcggtta tcacaggtca
     1261 ctcccacgca gaattcccag gaactgccga aaaaccaagc ttctatgcta aatactctgg
     1321 cgtggatgat acaaatggta aaatcaacgg tactcctgtc accatggcgg gtaaatacgg
     1381 tgatcacctc ggcgtcatcg acctcaatct ggtctttaaa gatggcaaat ggacaactac
     1441 ttctagcaaa gcggctattc gtaaaatcga tacaaaatca tctgtagcag atggtcgcat
     1501 catcgacctt gctaaagaag cccataacga aaccatcaac tatgtgcgcc aacaagtcgg
     1561 tgagacaact gctccaatca acagcttctt tgcccttgtt caagatgatc cttctgtaca
     1621 gattgttaac aatgcacaga tttggtatgc aaaacaacag ttggcgggta cttcagaagc
     1681 taatctacca atcctatctg cggctgcacc atttaaggct ggtactcgag gcgatgcttc
     1741 agcctataca gacattcctg ctggcccaat cgccatcaag aacgtagcag acctttacct
     1801 ctacgacaac gttgtagcca tcttaaaagt caacggtgcc caactcaaag aatggttgga
     1861 aatgtccgca gggcaattca accaagttga cccaagctca acagagccac aaaacctagt
     1921 caacacagat ttccgcactt acaattttga cgttattgac ggagtaactt atcagtacga
     1981 tattacgcaa ccaaataaat acgatcgtaa cggtaaggta gtcaacgaaa ctgccagcag
     2041 agttcggaat ctgcaataca atgggcaaga tgtgacagct gatcaagaat tcatcgtggt
     2101 gaccaacaac taccgtgcaa acggtacttt ccctggggtc cgcgaagctt ctgtcaatta
     2161 cttgctcaat ctggaaaacc gccaagccat catcaattat attatcgctg agaaagttat
     2221 caaccctaca gcagacaata actggacctt tacagatagc atcaagggac tcgacctccg
     2281 cttcttgaca gcagatcgtg caaaagaatt ggtagctaat caagaagggc tggtttacct
     2341 ccaagcctca gctgaaaacg aaggatttgg cgaattcaaa tttgtctaca ctgagccaaa
     2401 agtagcgact ccagatgaac agcagtcaga tcaaggtaac acaggtcaag atattgtact
     2461 cgaatctggt caacgaatta ctcttccagc ggtaaatcca cctgctcctg ctccacaaca
     2521 taaattggct agtccacatt cacaagcgag caccaagaca ctccccgcaa caggagaagc
     2581 tacttctatg cttagtctgc tcggtctcac tttgattggt tttgtcggcg catggactaa
     2641 gaaaaaagaa cattaaaata atcaagagat tgttttttca agctcttttt taccctcata
     2701 cactctctag ataaattaat caaagcatat aaaaatagct cgaagacgta ctcgagctat
     2761 ttttatcttt atatcgctac tcccaataaa tcggtacata gcgggtttct ttgggacttt
     2821 ttactgtata ggttcccaaa tctacccagt ttgattggtt cgccaaccgc tgttctactc
     2881 taaactcctg acaaaggatc gttgtttcta agcgaatgtt tccatacttc cttgcaaaaa
     2941 caaggtaaga aacgctttct gaagcaaaga cgagattccc caaagtcgat tttctaggac
     3001 gactaaactc cataattcta ccttcttctc caccataaat cgaagaaatc agattttcgc
     3061 tcataatggt ttcatgatag gttgtttcga gagaagtacg actatcagac gcttgaaaac
     3121 ctcgactaga cgtactcgat agttgacgaa taaaagcctt tctcacttca tgattttcaa
     3181 actcataggt ctgctctgtt gcttgattat acaaaaccaa ttccgagata atctgatagc
     3241 tagtccctgg aactctaccg aattgattaa gagcaacaaa gactatcaag aaaaatccaa
     3301 gagcagcaaa aataggggta ctcaatcttt tcatgggcaa tctccatcac atatctcctc
     3361 aatcttcgct aattgcaacg accattgagc tatgaacgaa tccatcacga tcctgtttat
     3421 tcgaatcgtt cagagcgata cattcactat ttgctaacgt gtgttcgaga ctattttctc
     3481 tctttagatg ataaatcatt cactttatta caataatagt atatcaatat gatttttaaa
     3541 aaacaactaa tcaggtatga aaatgtaaac cagatcatgt aaaatatgac caaataactg
     3601 caatcacgat ggctggcaac atattggcca cacgaatctt tttgtcccag atgatattga
     3661 caccgacaca gaagatgagg gcggagccga taaaggagag attggcaagg gcctgatccg
     3721 tcatcaaagg ttcaatcagg cgggccaaaa gagtcacaga gccttgaaag agaaaaacgg
     3781 gtactgctga aaagcctgct cccttgtcca aactcgaggt cataatcaaa atgataataa
     3841 agtccagaat actcttaacg gccaacaagc gataatcacc cgtcaatcca tcttggatgg
     3901 ctcctagtat ggccatagca ccgatacaga cggtcaaaga agctgtcagg aagcatctaa
     3961 gaattgacca tcttggctgt ttcctgacct ttctcggagc cagataccca agcgctcaaa
     4021 ccaaccttcg atatgcagta cttccccaat caaggtcccc agggctagac taagaaccaa
     4081 aagcatgcta ttttgacttt tgagttgacc atcaacgact gtcagcagtc cttctaaact
     4141 acctgaaatt cctagaaata aaacagctag cccgctcgcc accgttagtc ctgactgatg
     4201 ccgttctttc agtaaatggc caaaccaaga tcctagcaaa cctgctaggg caatggccac
     4261 cgtattgata atggttccta atgcgaacat gatcctcctt tatgattcac tatcatctgg
     4321 caatagataa taaacttttc catcttcaac caacaatttc acattctccc cataattgtt
     4381 aacagacaat cgcttactag attgatagga aacagtttct tgttctgaaa ttagcttaac
     4441 tgtccgtttt cgaacatcaa tgtaacgaat ggccttattt agctctccag ccgctttacc
     4501 aattccaaaa cctgctgctg caccgacaag gcctccaaga aagcctactc cagcagcaac
     4561 atgggcattc ttatccaact cttttgcaat atctgcaact actttcatag gaccctcttg
     4621 ggtacgtcta ttgcgcttag tgtcaatttg gaaaaatttt atcttatctt tgtgccaatt
     4681 ggctatcttt tcacctagac tattacaatt gtttagatag tactcataca catagtaact
     4741 actatcctct gacgccactc cttgcgagaa gactagatct agcttactaa gttccgctaa
     4801 taatctcaac aaggtttgtt gatagaataa attagtactt aacttatcaa ttaactgttc
     4861 atacttttca aaagataatc cttttccctt agtgatactc tcttcaatag ctagattgac
     4921 ctgttctagt aacttggtta cttcagcacg gaagttagca cactccatca actttagtct
     4981 tgcaagttca gcattttcga catagtctgc tgaaaatttt gatagttgag aaatattaac
     5041 tatcaaagcg cgaacagtcc ctttaaattc ccttacttga aaatccttaa catcgttcaa
     5101 cgtttctttc attgaatcaa gctgaccatt gatttcagcc atataatact gaccaactac
     5161 catagcagcg acctgcatag ctcctgaaac agcagctgca gcttttgctc cttttgcaat
     5221 ttcaacttga gcaggagtta gtattgcatg agccttaaat tttccttccg cacctttaac
     5281 aaaagcacga tacttatccg tttccccttt gattttgtgc aaatcgccta tcggcaaatc
     5341 cactttaaac aatcccttag gaatattagg ctgtccggct ttcttaagat gatgtttaag
     5401 tgctggttga actatctttt caacatgagc caaaatattc ggattcgtaa tttcatatct
     5461 ctgatatgct gatgaatcca actcactcat tttctgaatg agagcaaagc aatcatccga
     5521 aacaatcaat tctcggtgtt ccttttgttc taattcactc atctcccgat tctccttacc
     5581 tcaacaattc cgtcgcgtaa ctaatagcag aaagggcgta gaggggagcc gtttctgctc
     5641 gcaagatacg aggaccaaga cctgtcttga ccgctcctgc tccttcaaat gcggctactt
     5701 cctcaggcga cacgccacct tctggaccga cgatgacaag gactgattgg ccgatttcta
     5761 agccagacaa gattttcacc aggttggctt gttcgccctc ttttgcggcc tcttcgtagg
     5821 ctaagataat ctggtcaaag cctgctagtt gagctaggaa atccactttt ttctcaaata
     5881 aacgaacagc tggaatgcga ttgcgtttgc tctgctcggc tgcgccttgg gcaatttttt
     5941 ctaacttttc tgcttttttg cctaattttt taccgtccca tttgaccacg gaccagtccg
     6001 ctggaaaggc ccagagggct gccatgccta actccgttgc cttttgggcg acaaattcga
     6061 gcttatctcc cttgggaaag cccatggcta tagtgacgga aacaggtaat tcgacattgt
     6121 ctgacagttc ttcgatgatt tcaacagatt ggttctggct atctaccacg cgcgccaagc
     6181 gtttaatccc gtcgtcaaag actaggacaa tctgttcatc tgcctgcaag cgcatgacag
     6241 aaaacatatg cttggcggtg tccttatcgc ttatctggaa cacgccctgc ggtgctctgc
     6301 cattgataaa atactgctgc atcctagcct ccaatcacac ctgagcggtc agccgtcttc
     6361 ttaaagacac agcaattcca ctcgccctga atcatatggg tctcaaggaa gaaaccagcc
     6421 gcctccgcag atgctcgcac catgtcccac ttatccgcga tgatgccgct cataatcagg
     6481 tagccttcgt ccttgaccag acggtaggca tcctcggtca gatggatgag aatgtccgcc
     6541 aagatgttgg caacgataac ttctgcttta atatctacgc cacgaagcaa atcgcccgct
     6601 gcaacatgaa tattgctagt attagcgttg aggtcaatat tttcctgagc cacacgcacc
     6661 gcaacttcat ccaagtcata ggcataaatc tccttggcac ctaggaggga gctagcaata
     6721 gaaaggacac ctgaacctgt gccgacatca atgactgtct cgccaccacg caagacctga
     6781 gaaagagcaa agaggctcat cttggtcgtc gggtgggttc ctgtaccgaa agccatgcct
     6841 ggatccaagc ggataatctt ctccccagct gtcgcctcat agtcggtcca agacggtaca
     6901 atggtcaaat cgtggctaat gcgggctggc tcatagtatt tcttccagtt gtccgcccag
     6961 tcttcctctg ccaattcctg actttctagg ctgacctgac ctgtttccaa gccaaagcct
     7021 gtcaaatccg ccaagcgagt cgccaagtct gccttaactt cctcaatatc tacagtatca
     7081 ggataatagg ccgtaatcac aatcatatcc gactgttcca cctcgggata gagttcacca
     7141 aaacggtcct cctgccccac atagtcagcc gagtcgctaa tagccacccc ctgactgccc
     7201 gtttcaatca tgagatttga aactgcttct tctgcatcac gatgcacgtg aatcgttaat
     7261 tcttgccatg agttcatgtt tgttgttcct tttcttttct atgcgtcaat cactgtatta
     7321 ttgtaccgat ttctagccta ttttacaagt taatgttacg cgatggagcc ctaataatac
     7381 tttttcgaaa attttctaat cgcactgcga ataaacatgt gtaggaaagt ttgagacggt
     7441 ggttccaagt ttctgaacgg aggtgatgcc catgaaagtg gacagcaaat ctgctagaaa
     7501 ggctagctca tgccagatgg taagtaaact tactcatctg gcaacgacaa atcctataag
     7561 atttgtctag ggcacgcact agctcgagtt ttgaaaaata tcgtttcaaa actctcacgt
     7621 cggagaactc tggatttata tttatcaagt ctacttgttg aaatgctgag cttgataatc
     7681 gtcatcattt tagctattcg agataaaaaa taaccgtcag caaactttga cacagttctg
     7741 acggttattt aatctaacga actgaaccat cgttatggtc ctgtcagggc gttgagctgg
     7801 aactcaacgc cttttctatt tttataatag caaaagtttc gcctgcagtc aagcaagaaa
     7861 gaaaacggaa tgtcaaatag aatctattac cctcaattct ataccaactg caccgtactg
     7921 ttctaattgt tctcgtgaat agtaatcttc catatcttcg ggtttcgcgc ctctgatact
     7981 gctttgcgta tacccacaag acaataaatc cagttctttg tataactgag caaaattatc
     8041 aaatatgtga agatctaata cttgcacctc gatcgtttgt gtctgatttt ctgtacaata
     8101 aaaacggatg cgatctccaa tttgtatatg cttgcgcttc tcgtcataaa gtcgtagctc
     8161 aatggtcttc tgaccagact tcatcatttc aaaaggtttt ggagccagta acatttcatg
     8221 aaccaactca atacctcgga tatgggtaaa attctccctc caacaagtct gctctgcctt
     8281 tttcaaaagc ctctccgtcc caagaaatcg caaaatcttg ggcttctggg tccaccaaaa
     8341 aatccatgag gtcatctaaa ccttggtcgg cggtatcttt gagaaagcct gcgaagtagg
     8401 tcagaaactc cgctgaaaag cccttcttgg cgtcaaatgg cagagcgacc aggtagtctt
     8461 cctcgtcaaa gcgagacttg tcctggttgt agaaaaggac atactcctct aggaaaatat
     8521 cctcagaaga cgcattacct tcgtcgtcca ccgtttcaat cccagccaca ttttgcgctt
     8581 ccaagataaa agccaactca actgcgtggt ttttcttgtc ccagttgagc tcgtaatcgt
     8641 aggtaaaatg tttgtccagt gccgcttcca gcacatctaa aaatccatgt tttgccatgt
     8701 cagtcctctt tcgattttgt gttataataa gtgtaccata atcagctaac aaaagaaacg
     8761 aaaggaagcc tatgccagcc aatctcgccc ttcgtatgcg gcccaaatcc attgatgaag
     8821 tcatcggtca ggaacacctg gtcggtcctg gaaagattat ccgtcgcatg attgatgcca
     8881 atatgctgtc gtccatgatt ctctacggtc cgccagggat tggtaagacc tcgattgcgt
     8941 ccgccattgc tggtacgacc aagtatgcct ttcgaacctt taatgccacg acagacaacc
     9001 aaaaacgcct gcaggaaatc gctgaagaag ctaaattttc tggtggcctg gtcctcatgc
     9061 tcgatgaaat ccaccgcctc aacaagacta aacaggactt cctgcttcct cttttggaaa
     9121 acggcaatat catcatgatt ggagcaacga cggaaaatcc cttcttctca attttgcctg
     9181 ccattcgcag tcgggtgcag atttttgaat tacaaccttt gaaaaccagt cacatccgac
     9241 aggccttgga actggctctg acagacagcg aacgtggttt tgattttccc gtcaccattg
     9301 aacctgaggc cctggatttt ctggcaaatg cgacaaacgg tgaccttcgt gccgcttaca
     9361 attctctaga actggctgtg ctttcgacca aggaaagtga cgacggtagc cgccacattg
     9421 atctggacgc cgtggaaaat agcctgcaaa agtcctacat cagcatggac aagaacggcg
     9481 atgcccacta cgatatcctc tccgccctac aaaaatccat tcgaggtagc gatgtcaatg
     9541 ccagcctcca ctacgccgct cgtttgattg aggccgaaga tctgcctagt ctggcccgtc
     9601 gcttgacggt cattgcctac gaagacatcg gcttggccaa tccagaggct cagattcata
     9661 cggtgacggc ccttgaagcc gcccagaaaa ttggctttcc agaggcacgc attttgattg
     9721 ccaatgtggt gattgatttg gctctttctc ccaagtccaa ttctgcctat ctggctatgg
     9781 atgcagctct ggctgatttg cggaaaaacg gccatctgcc cattccaaat catcttcggg
     9841 atggccacta tgctggcagc aaggagctgg gaaatgctat tggctaccag tatccgcatg
     9901 cctatcctga aaaatgggtg gaccagcaat acctgcccga taagttacta gctgcggact
     9961 acttcaccgc caacgacact ggaaaatacg agcgtgcctt gggcatgaca caagaaaaga
    10021 taaaaaattt gaaaaaaaat agacgccaaa atccttgata gaactggttt ttgggtacac
    10081 acgctttgac accgcttaca tttttgccat ttttctcttg atttttcaaa aaaaagtggt
    10141 attattaaat cataaataag aactgctgtg gtatacgaat tcatacctat gtgttgaccg
    10201 actatttttg tattactagg gagacaaaga tcctctaaca gtatgcaagc tggcacaccc
    10261 agaagcaact aagttagaaa cgcgtcaccc acctgctttt agcgtgcggg atcaatacaa
    10321 tccatggata accggtacca atacagcatt tttatttttt accttcctta gctcagctgg
    10381 cagagcagcg gactcttaat ccgtgggtcg taggttcgat ccctacaggg aggattggtt
    10441 gatatgagga aagtcttgat ttatcaaggc tttttctcgt tttttgagtg aatttggtca
    10501 aaatttggtc aaaaagaatc ctttcacatt gtgaagggct atttttttaa cttatcccac
    10561 aggacaacac gtttttcctg taatgatttc tgtacatcga tgatgcgttg gttggaagag
    10621 cctcgaaatt gcagcataag attgcgcttg gtacggtcat aacggccgtc aactagaata
    10681 tctaaatagg atagtaactc taacttatcc ggagtttcta acatcatttc ttcccatgtg
    10741 tagcctgtcc aagaccaaat gtccttttct ggcagttctt tccgaattcg ctttacgagt
    10801 gggaggaccg tgcctgtgtt cagaaaaggc tcgccaccca agagagttaa gccctgcaca
    10861 tagggctggc ccaagtctgc taaaatgcgg tcttcaagct ccttggtata gggaatccct
    10921 gctttaaaag accaggttgc aacattgtag cagccctcac agtgaaacag acagccacta
    10981 acatatagag agcaacggac tccttctcca tccacaaagt taaaggcttt gtagtccatt
    11041 attcgccctt ggctaagttc ctcgctcttc cattcttgtg gtttaggatt attcatttca
    11101 aatacctgag cataagcaaa tgaaatctga tcgtttggat gaattccgtt ttaccagtac
    11161 acagactgtt tttatccata aatggtactt ccaatgcttt agctcggatt gatcccagca
    11221 agcttagtgc ggaaccaatc tcaattcctt tcctgttttg attcagcagt ttgtcactcc
    11281 cattaatcct caatccagta tctttctact ccgtctcgaa catcttccaa aacgccacca
    11341 caagccacaa tcgtgcgacg gctggcttga ttgtctgtcg agcaagtcac aaggaccttg
    11401 gaaatatttt tggttgcggc ttcctgtaaa ccaagtcgca gctggtcctt ggcatagccc
    11461 tttcctcgct cggtcggacg aatggaatat ccgatatgac cgcctttatt gagcaggaaa
    11521 tcattgagcc gtaggcgtag actgagaaaa ccaagggctc gaccagtctg gtcaaatgac
    11581 acatattgaa tggaaggaac aaaaccgtct ggcagattga gacctgcctc atagtctttg
    11641 tttctaaaaa tccattcttc aaagtccaca tctttggaga taaagcctcc gtccatagct
    11701 gagcctgccg cttcaaactc tgccagcatt tccaaaatcg tttccttatc cgctatagtc
    11761 ggtcttctta gttccattct agcctccata ttgtctcttg aaaaattcac tgatgatgtc
    11821 tatatccagt cccaagtcct gcacaatttc tgccttgtgg aaatcatcat agttgtcctt
    11881 accgctccaa acaaaagaat tggtcacaat ctgatagtcc ttatctgact cgactgctct
    11941 gctaaagcct gacaaataac aggggccaga gttgataacc cttgacgaat gctgtctcgc
    12001 tctccgtcta gtgcctgagg taaaatcgct atcggtttgg aaaaagctgc gtcacgttcc
    12061 gatttcatct ggtcgataat agccttgacc gccctgtctt cttgggtcag tttctccacc
    12121 tcaatcaagt cataagcctg aacctcgtgc cgtccatctg caaaacaccg cagggataga
    12181 tgaccgacaa agcgaccata ctgaccagct tggcagatac taactccgcc aatctgacta
    12241 ggttgtttta gaatggtatg ggtatgtccg cccaaaatca cgttaagctc agggaaatcc
    12301 ttggccaaat gcacatcctc atcgtatccc agatgactga gcaagaccag atgagccgat
    12361 ggattctgac tcacaatctg atccaccaat cgccgcagag cttgtttatg gtcttcaaaa
    12421 atcacattct ccgacggtga cgcaacctcc tgggtttcca aggtagtcaa accgaggaca
    12481 tagaggtttt tcccattcat atcaaattca aggacatcct caagcggcac caactcatct
    12541 gccacctcca catcctgata gcggagattg gaggacacaa ttggaaactg ggcatagtca
    12601 tccaagcgac taatcaactc atctccgtgg tcaaactcat gattgcccaa ggtcatagcc
    12661 tgacaaccaa tttgattcat tagctcgatt tccttgactc ctcggtacat attgaaaaag
    12721 atattacccg aaaagagatc gccgctgtca aagacaaagg tcggaactcc ctctttttca
    12781 ttcctagccc gaatgttcgc aatcagttgc gccttctttg gaaaattctc catgtaggaa
    12841 tgcatatcat tggtatggag aatgctaata tctgtatagt ccatactatt ttttcttatt
    12901 ttttgcttgt ttgagcaatt cctgcacacg cgctttttta tcctgcttca cattagaatt
    12961 cttctcgtga tagcgtgtca ccagggcctt ccccttatcg tctaattgat attttcccat
    13021 tgttttctcc tcttttttta tctcttattt gtttataata aacttccaca gctaactgga
    13081 actgtggaag ctctacatag tctgtttatt acttataagc tcgacccatt catgtgtttc
    13141 acacgcgccg aaatttcctt gtgacggcct tttaccatcg gacgggcctg tggattgcct
    13201 agataaccac aagttcgttt aacaacatcc accgacttag gatcgctatt cccgcaattt
    13261 ggacacttga agccacgctc cgtcggctca aaatcacctt caaaatcgca agcgtaacaa
    13321 tggtcaattg gagtattggt tcccaagtaa ccaacacggt cataagcata gtcccaaaca
    13381 gcttccaagg cctttggatt ttgttgcagc acagggtatt cacagtaatg gataaatcca
    13441 ccactggcac ctacagcagg ataaattttc tcaaagtcca gtttttcaaa cggtgttgga
    13501 tttttgcgta catcataatg gaaactgtta gtgtaatatt ctttatccgt aatgtcctta
    13561 acgatgccaa atttctctgt atccatacgg cagaagcggt ctgtcaggct ttcagatggt
    13621 gtcgaataaa ctgagaaatg ataaccatat tcatccgacc aatcttcaac caaggctttc
    13681 attttcttga taatatccac cgtgaaatct tttgcctctg ggttggtctc ccattcgcca
    13741 ccgtaaaata ctgttgcgac ttcatacaaa ccaatgtacc ccaaagatac ggttgctcga
    13801 cgatttttaa agacttcatc tactgcgtct gtcttagcca agcgtttgcc gaatgcccca
    13861 tactgataca aaattggtgc attggcaggt gtcgcctcct tgacccgctc cacgcggtaa
    13921 accaaggcat ccttagcaat ggccatacgt tctacaaaga tttcccagaa cttatcctta
    13981 tctccagcag actccatggc aatccgtggc aaattgacgg ttacgacacc caagttcatc
    14041 cgaccagatg tcacatcctg cccattttca tccttccaac cttgaaggaa agaacggcag
    14101 cccattggca ccttgaaaga acctgtcaac tcaacaatct tgtcataaga aagcatatct
    14161 ggatacatac gcttggtcgc acattcaatc gccaattgct tgatgtcata gtttggagaa
    14221 tctggctcca agttcaatcc acgcttaacg gtgaaaatca acttaggaaa gatagctgtc
    14281 cgaccttctc gccctagacc cttgatacga atgttcaaaa tcgctttttg aatttctcgc
    14341 tcaaaccatg atgtccctaa cccaaaaccg agtgaggtaa agggtgtttg tccattggaa
    14401 gtaaagaggg tgttgatttc atactccaaa gactgcatag catcatagat gtctttttgc
    14461 gtttttgcac gcgcatattc ttcttgcttg tctggcaata cccaatcctt ggcgtctttc
    14521 aaatgctttt ggtaattgag ttccgcataa ggcgccaaaa cttcatcgat acggtcagct
    14581 gagcaaccac catattgact agaagccaca ttggcaatga tttgtgaaat ctgagccgta
    14641 gctgtttgga tagacttcgg actttctaca tcggcatttc ctatcttgaa gccttgtgcc
    14701 aacattcctt tgaaatcaat caaacaacag ttggtcattg gtgtataagg gctgtaatcc
    14761 aaatcatgat aatggatgtc acccttttga tgagcattgg ctacatgagc tggtaataat
    14821 ttaagaccga ttgacttgcc gacaatcccc gctgtcaggt cccgttgagt attgaacaca
    14881 tccgcgtcct tattggcatt ttcattgacc acagactggt ccttgctcaa cagcttatga
    14941 atctcaaaat taatatcggt agcctgatga cggcgaaaat cacggcgtgt tcggtattga
    15001 atataaagct ccgccaaatc atataaatga gcctttaaca attcctgttc aacgaccgtt
    15061 tgaatttcgt aaatttgaac atctttttca aatcggcgac caatttcagc caaaacagct
    15121 tctaatacaa tttttaaacc tgcctctgaa acaggatgtt ctaattcttg gtttgcccgc
    15181 cgaagagcag aaaaaatctt atcctggtca aaggatactg tccgtccatc acgttttaaa
    15241 actaataatt ctatactcgg taagacattt tcttgcacat tcatctgaca aacctccaaa
    15301 attcttcact tctattagtg tagcacttca caaaacaaaa atcaatatct tgtgtaaaaa
    15361 aatattaaac aacctatcca tgcactatat ataggtcttg aaaattctat caattggaaa
    15421 acaactgtgc caaatttcac cactcgacaa ggatgaatta ctagattgaa atatgacaac
    15481 agattgggca aaggtctaac ttctctatca gaaaacctaa aaaacagccc tctaacaggg
    15541 ctggctctat gtattgaaaa taggctaggg cgggtcacca catgcctatt taaaattgag
    15601 gatttgaata agaggcgaaa aattctctag tccgttcttc tttaggatga tggaaaagct
    15661 cctcaggtgt cccctgctcc aggatacggc cgttttctag aaataatacc ttatccgcca
    15721 cttggtaaat gaaattcatg tcatgactaa ctaaaatcat cgtttgtcct gtcttagccg
    15781 catcggcaat ggaacgttct acttctccaa ccaactctgg atcaagcgcc gaagtcggct
    15841 catctagtag caaaatgtct ggttgcatgg caagagcgcg tgcaagagcc acacgttgct
    15901 tttgaccacc tgacagatgt cttggataat ggttctcacg ttctgacaga ccgacctttc
    15961 tcaattcttc tttggcaagg gcggttgcag atgcgtcatc catccgcttg acaattttaa
    16021 gcccttcctt gacgttatca agagctgtct ttcgttcaaa cagattaaac tgctgaaaga
    16081 ccatagccag tttgcggcgt aaggtcaata tctcctcttt tgaaatattg gtaaaatcaa
    16141 ctgtaaaacc atcaatttcg atactccccg catctgcctg ctccagatag ttcagactac
    16201 gcaaaatagt tgattttcct gctccagatg gtccaacaag ggcaataacc tgcccttttt
    16261 caatgtccat atcgattcca tctagtactt tttgtcctga aaattccttg actaaattgc
    16321 gaattttaat cattagcgat cacctccaac tccagaaata tctactgatt caggggcctg
    16381 aatagccatt ttattttcaa ggaaacggcc gaaagactca atcagaacag agagcgccca
    16441 gtagaccaaa gagacagaaa tgtaccgctc aaagtagcga tagtctgccc cgccttgaat
    16501 ctgtgcctgt gcatagacct caacgatacc cgcactgaag gctagggaag ttcctttagt
    16561 cagaccaatc aaggtgttaa tcaacgacgg agttgcaatc acagccgcat taggaatgat
    16621 gatccgacga taaacctggc cagaagtcat acctaaggaa cgagccgcct caatctcccc
    16681 tggactaaca gcctgaatcg cagcacgaat agactcactc atataggctg cctcattaaa
    16741 tgcaaaggct gtaatcgcaa agacagctgc aggaatagca ttgatattcc aatcaagacc
    16801 atattcctga ttgagccctc taagaaccaa tggaattccg tagtaggtca acatcagctg
    16861 caccaagata ggagtgcctc gcaaaaaact aacaaaaact gcctgaacgg gatataagaa
    16921 tcgcacacga ttaatcttta caatcgcaaa aaccaagccc aatatcaaac caaaaaaagc
    16981 acctgcgagc gtcaagccaa tcgtaatcgg taaacgttca ataatggagg gtagggcatc
    17041 aaaaacagcc ctaatactaa atagcttacc atccggtaac cactctaaaa aaccttgata
    17101 ccatgccggt cctgttattc ctaatacacc aatcatactc ttctccaaac atttaaaaat
    17161 gacagatttt ctgccgtata ctctatttta tcatgtaacc acccacatca accttatata
    17221 tattttatgg ctgtgataag taatcttaat gattataaaa agacaatgaa aaagaaacag
    17281 cccacttgga ctgctccctc ctgtcacaat actatcgact cctattcatt aggaacagct
    17341 agttcctccg ccgttggagc atagtctttt ccgaagaatt gctctgtcaa tttcgcaatg
    17401 gtcccatctt cgttcaaagc cttgatacgg tcgttgacaa agctttgtag agccgtattg
    17461 tccgaagaaa atacatagta aataaacggt ttttctgctg cttcaagctc gattgtttta
    17521 agatttgtca aattttgatc tgcaataata gcattaaccg taggggcatc aaaaatttta
    17581 aaatcatact tgccatcatt tatattggtc aaaatctgtg tgatattttc accagtatag
    17641 ttgatgtcga ctggtttatc cgtatgctga gtattgtatt cctctagctg agcagctgtt
    17701 gttgtccctg taactacctg tgtagaatga ccaccaatat catcataaga ctgaatatcc
    17761 gtatcttttg gcacagctaa aacggatggt gtagaggccg ttggataaga atagaggtat
    17821 ttttcaccac gctcttttgt ataggaagta ttattcccta acaaatcaaa gcgtcctgaa
    17881 tccaagccag ggaattgacc gctaccatct gttgtttcaa aggtcaattc atactggtca
    17941 gaaccatcaa agatagctcg agccaattca atatcaaacc ctgtcaattc tccattctca
    18001 tctcgataag aaaaaggctt ggtagtccca acagttccca ttacgatggt ttctttttta
    18061 tccgcttctg aagaactagt gtttgatgag tttgaggtag acgagcaagc tgccaaagca
    18121 actgtcgcaa gagctgtaat accagccagt gatagaatag ttcttaattt catagtaatt
    18181 ctccttttgt ataagcaagt cagacctaca aggtctgcac aaaataatca aatagcttct
    18241 gattgccgcc actttgatca atcagaagtt ccggatgcca ctggacaccc agaaaacgtg
    18301 tctcatccat tgatcggaca gcctcaataa taccatcatc cacagaatgc acaatcgctt
    18361 ctagcccctg acccagattc tctatcgcct ggctgtgaat agaattgaca gctactctct
    18421 gaccaaaaat actagccaga ggcgttgcct ctttacattc tacctggtga atcagatcaa
    18481 aaggcaagga ccgatgcccc tctaccgctt gtttgagagt tcctccacgt gcaacattga
    18541 aaagctgcat ccccctgcaa atccccaaaa tcggtttttc ctgtctcaag gcttcgtgga
    18601 ccaatttcag ttcaaattcg tcacgttcct tgaaatagtc atcgctttcg atgagttttt
    18661 cttgaccgta aaactgaggt aatacatgtt gaccacccgt cagtaataac ttatcaatcg
    18721 ccgacacata gtcgacaaca tccgtttcac cagacaaggg gatataaaaa ggaagacccc
    18781 ccgctcgctt gattccatct gcaaagttac gagacaacga taaattcata atcggaatcc
    18841 cctctgcgac aggcttttca ttactggtga tgccaataat cggtttcccc atcctgccct
    18901 cctttcgtaa tgtatagaca ctatcttatc atgctctctc tttttcgtat attttaaatt
    18961 atttatagcc agccataaaa aatatttatg gatcaaaaaa agagcctatt ctg
//
LOCUS       DASGCC010000028        18858 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.028, whole genome shotgun sequence.
ACCESSION   DASGCC010000028 DASGCC010000000
VERSION     DASGCC010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18858
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.028"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(11..628)
                     /locus_tag="U1404_000676"
     CDS             complement(11..628)
                     /locus_tag="U1404_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEM5347650.1"
                     /translation="MKIIKLFFSIKVYLWLVLSFLLLLCGVWGYGYISGEKSNQQEVS
                     IHTAIESVEQVNELVFLNTAVQKIVTAKNYTVLFGQEMPFSEKSALLIIKYKAKFGIK
                     SPVSIEHLSENRYKITLPAFKVIGLELDAEEPYTLYDKSGEILSFATEEIDTAQLITD
                     EFQSAEQETFLADYQDDIKESAKTYYQNLFSAISPEIQLEFVFKE"
     gene            complement(800..3253)
                     /gene="parC"
                     /locus_tag="U1404_000677"
     CDS             complement(800..3253)
                     /gene="parC"
                     /locus_tag="U1404_000677"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEM5347651.1"
                     /translation="MSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRI
                     LYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH
                     GNNGSMDGDPPAAMRYTEARLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFP
                     NLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI
                     IQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVR
                     VNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDN
                     FTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRLHIVEGLIRVISILDEVIALI
                     RASENKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLA
                     AIIGDERTMFNLMKKELRVVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTK
                     AGYIKRTSPRSFNASTLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELT
                     DIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGTYFAVTQYGQIKRVERKEFTPW
                     RTYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEVPIIGAKAAGV
                     KAVNLKDGDVVVAAFISNTSSVYLLTQRGSFKRMATEEIPVTSRAKRGLQVLRELKAK
                     PHRVFAAGPVLTDQGDFDLFSTANEDETTSQILHVQSKTGKLYEVDVTQLSLSERTSN
                     GSFISDTISDEEVFRAWID"
     gene            complement(3454..3906)
                     /locus_tag="U1404_000678"
     CDS             complement(3454..3906)
                     /locus_tag="U1404_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347652.1"
                     /translation="MIKFLRKKLTIEQLKKVPYASQYTEVLRSIWRADVPKYGISSTL
                     QGELLRQLEKLRWEAQANGNVNWCEEHSNYCRFIKETLYKGKVLSSQQKQELVLIMDY
                     LKSCGEYAQAYQENLIDDEELEIEKLAYVDDNLYDRVGDMIAFFYQRT"
     gene            complement(3909..4403)
                     /locus_tag="U1404_000679"
     CDS             complement(3909..4403)
                     /locus_tag="U1404_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HEM5347653.1"
                     /translation="MPKLTDRFQKRLSEWARKRKPFKNKQELEEKFDQALKIWQSSKT
                     RQHAENLLSEQGKLEHFLHSTERKLSRMPFGGDKFAAIPGLISMVRSYIRRDYSKLPK
                     GTILAIIGALIYFFSPIDALPDFILGAGLLDDAFVLNACLKLIKTDVDDFRSWQASQW
                     KVDE"
     gene            complement(4436..5038)
                     /locus_tag="U1404_000680"
     CDS             complement(4436..5038)
                     /locus_tag="U1404_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002395946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM5347654.1"
                     /translation="MVLENKLGIENSAELARLEEQISKKKAAQLFETGQLFQIEVGTF
                     AGLAHIHQTLFEEIYDFSGKIRDVNIAKDNFQFAPRIFLEQSLAYIDKLPHETFDEIV
                     EKYADMNIAHPFREGNGRSMRIWLDCMLRDSLGKVVDWNSIDKDEYFNAMVRSHVSTG
                     ELKYLLLQALTEDLGQATYFKGIDHSYYYEGYNLYRTEDL"
     gene            complement(5062..7011)
                     /gene="parE"
                     /locus_tag="U1404_000681"
     CDS             complement(5062..7011)
                     /gene="parE"
                     /locus_tag="U1404_000681"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEM5347655.1"
                     /translation="MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHM
                     VWEIVDNAVDEALSGFGDRIDVTINKDGSLSVSDRGRGMPVGMHATGKPTVEVIFTVL
                     HAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLE
                     KIGTAPKSKTGTKVTFMPDDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE
                     QEEYHYENGVQDFVSYLNEDKETLTPVLYFEGEDAGFQVQVAMQYNDGYSDNILSFVN
                     NVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPE
                     EHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAA
                     RKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQ
                     AILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDVNYDKIIIMTDAD
                     TDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKTEKIAYAWSDGELED
                     LRKDFGKGFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSVLMGD
                     KVEPRRKWIEDNVKFTLEEATAFTK"
     gene            7154..7798
                     /gene="plsY"
                     /locus_tag="U1404_000682"
     CDS             7154..7798
                     /gene="plsY"
                     /locus_tag="U1404_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEM5347656.1"
                     /translation="MLVNLILLFIAYLLGSIPSGLWIGQTFFNINIREHGSGNTGTTN
                     TFRILGPKAGTIVFVIDFLKGTLAALLPLIFHAQGISPIVFGLMAVLGHTFPIFAQFK
                     GGKAVATSAGMLPGVAPAFCLYLVIIFVTSLYLTSMVSFSSVLAAALAILGALLFPAI
                     GIILPSYDWLFTVIIVFLGSFVIIRHKENIQRILKKEENLVPFGLNLTKQKKRA"
     gene            complement(7808..11461)
                     /gene="addA"
                     /locus_tag="U1404_000683"
     CDS             complement(7808..11461)
                     /gene="addA"
                     /locus_tag="U1404_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HEM5347657.1"
                     /translation="MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVL
                     VSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERIEKNLNETIAET
                     MDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
                     KEVFDQLFADYLEQDENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWL
                     KEQAVQADLYSQERIELILEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANV
                     EEVLDLLTGLDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFKEEYNAG
                     KSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEF
                     GDIGHFAIRILEENVDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGD
                     IKQSIYRFRQADPMIFQEKFELYQADSQAGKLILLKENFRSQIEVLEATNAIFTRLMD
                     RQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETPLTAGEI
                     EVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSL
                     EVMIMLDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQ
                     TNGQHPELMSGELKKKIKDFLSILENWRAFAKMHSIYDLIWKIFNEKFYYDYVGALPN
                     GSKRQANLYALGLRANQFEKTGYKGLSRFIVMIDRALANDKDLADVQEFLPQNAVQLM
                     TIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQV
                     RVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAEKKLYLVGKGNADKLAKKYDGKK
                     ADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTEEKIGKLTLKSKL
                     EDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSLRTPSQIKKLYEPILEQEG
                     MEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAV
                     HAEQAIKDKINVQMILDFFDTDLGREILANTDKLHREAPFASLQTDSVSQENFVLRGI
                     IDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCHLILL
                     GGERIEVVEVKVN"
     gene            complement(11461..14727)
                     /gene="rexB"
                     /locus_tag="U1404_000684"
     CDS             complement(11461..14727)
                     /gene="rexB"
                     /locus_tag="U1404_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEM5347658.1"
                     /translation="MKLVYTDIRNPLTQYLTDTSAEFAKEAKRVFYIAPNSLSFEMER
                     KVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQPLDDVGLAMIFFRVLSQFEDGDL
                     KVYGRLQRDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
                     ESFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILI
                     GVYASKKAVQVIYAEGNVYQANVDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEA
                     YYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHIHQGARYKDILLLLGDV
                     DSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSG
                     LYASISQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVVKEKRLVYDLAVLE
                     PLRAKIMEPLNQLFKAGPQSGATLLEKFMAFLEAIEFPKNMEKMSRNLSEVEQEKEEQ
                     VWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVKSYDLIE
                     PHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHA
                     AMMSLLNAATEQLVISTPQIYNEGEDSLSPYVKILKEMGLSSEERGRIKSLSPQDIGH
                     YKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKKLESQGIEIPTITGDITSKQL
                     AADTLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLH
                     RIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSAT
                     ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKS
                     SDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQDPIIKLKDTKNLE
                     QLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDI
                     LAGRFAINPYTKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD
                     "
     gene            complement(15018..18823)
                     /locus_tag="U1404_000685"
                     /pseudo
     CDS             complement(15018..18823)
                     /locus_tag="U1404_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775059.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
BASE COUNT         5023 a         4358 c         3718 g         5759 t
ORIGIN      
        1 aaccagactc ttactcttta aaaacaaatt ctagttgaat ttcaggtgag atagcactaa
       61 ataaattttg atagtaggtt ttagctgact cttttatgtc atcttgataa tctgctaaaa
      121 acgtttcttg ttctgctgac tgaaattcat ctgtgatgag ctgggcagta tcgatttctt
      181 ctgtcgcaaa actcagtatc tcaccactct tatcatataa ggtataaggt tcttctgcat
      241 ctaattccaa tccaatgact ttaaaggctg gaagggtaat tttgtaccga ttttcagaaa
      301 gatgttcaat ggatacagga cttttgatgc caaattttgc cttgtactta atgattaaga
      361 gggctgattt ttctgagaag ggcatttctt gaccaaataa gaccgtgtag tttttagcgg
      421 tcacaatttt ctggacagct gtatttagaa ataccaattc attgacttgc tcgacagatt
      481 caatagccgt atggatactc acttcttgct gattactctt ttcgccagaa atgtagccgt
      541 atccccatac accacacaat aacagaagaa aggacagaac aagccataga tagactttta
      601 tactgaaaaa taatttgata attttcatag catttacctc ctctacagta tagcaaaaag
      661 actgctttac aggcctcgat tagtaccaac cagtcagctg gtgaagccag tcctcaaagg
      721 taggaaagac tttcatggca aggactatca gtactaagat agtgaacaaa ataaggaatt
      781 tctttttcat tctaaatacc taatcaatcc aggctctgaa gacttcttca tcggaaatgg
      841 tatccgaaat gaagctgccg ttgctagtgc gttcagacag gctaagctgg gtcacatcaa
      901 cctcatagag tttgcctgtt ttggactgca cgtgaaggat ttgacttgtc gtttcatctt
      961 catttgctgt gctaaagagg tcaaaatccc cctggtccgt caagactgga cccgccgcaa
     1021 agacacggtg aggcttggcc ttgagttcgc gaagcacctg caaaccacgc ttggcacggc
     1081 tggtcacagg gatttcctcc gtcgccatcc gcttaaagct accacgctgg gtcagaagat
     1141 agacagagct tgtgttgctg ataaaggccg caaccaccac atctccatcc ttgaggttga
     1201 ccgccttgac accagccgcc ttggcaccga tgattggcac ttcttcgatg ttaaatcgca
     1261 gagcatagcc cttttctgtc atgagcatga tgtcatccaa gactacaggc gatacagtaa
     1321 tgaccacatc ctctgcatct ttgagtttag catacttggt tgacttggac ttgtaagtcc
     1381 gccaaggagt aaactccttc cgctccacac gcttgatttg accgtattgg gtcaccgcga
     1441 aataagttcc ctcttcaaaa ttctccacca attcagcgaa gataatttct tcactggtat
     1501 caaagttcat gagagtctgg ctcaggtgtt caccaatatc cttccaacga atatctgtca
     1561 actcatggac aggtcggtag atgacatttc caagattggt aaagagcaat aggtgctggg
     1621 ttgtcttggc attctgcaag aaaatcagct ggtcgtcgtc ccgcttgccc atttcttcca
     1681 acgttgaggc attgaaagaa cgcggacttg tccgtttgat ataacctgcc ttggtcacgc
     1741 tgacaaaagt ttcttcttcg acaatcaagc tggcggtgtc aatctcaatc gtttctgcct
     1801 gatcttgtaa ctcactcaaa cgaggattgc caaattgttt cttgaccaca cgaagttctt
     1861 tcttcataag attaaacatg gtccgctcat cgccgataat ggctgccaag gtctgaatct
     1921 gctcgcgtag ggctgcttct tcgttttcca aggtaacaat gtcggtattg gtcaagcggt
     1981 agagttgcaa ggtcacgatt gcttctgcct gttcctcact aaaatcatag ctgactttca
     2041 agttttcctt agcgtcagcc ttgttttcag aagcacggat aagagcaata acctcgtcca
     2101 agatggaaat gacacgaatc aaaccttcta cgatatggag gcgtttttct gccttttcct
     2161 tgtcaaactt agaccgagca atgataatct cacgacggtg ggcgatatag ctagacaaaa
     2221 tcttctgcaa gccaacctga cgcggtgtga aattatcaat agccaccatg ttgaagttgt
     2281 aattgatttg caagtcggtg tatttgtaga ggtagttgag aatggtctgc tcatcgctgt
     2341 cttttttcag ctcaatggca atccgaagac cagtacggtc tgactcatca cgcacctcgg
     2401 caataccagg caccttgttg ttgacacgga catcatcaat cttcttgacc aaaacagcct
     2461 tgttgacctc gtaaggaatc tcagtaatga caatctgttt cttgccagcc ttaagttgtt
     2521 caatttcaca acggctacga acaacgacac ggcccttacc agtttcatag gctttcttga
     2581 tttcgtcagc cccttggata atggcacctg ttgggaagtc tggtccaggc aagaactcca
     2641 tcaacttttc taacttagct gttggatgat caatcatata gacaacggca tcgatgacct
     2701 ccgctagatt atgcggcggg atgtcagtcg cgtaccctgc tgaaattcct gtcgctccat
     2761 taaccaagag attagggaag gcagctggta gcacagtggg ttctttttcc gtatcgtcaa
     2821 agttccaggc aaatggcaca gtctttttct cgatgtcggc cagcagataa ccagccattt
     2881 cagacaggcg agcctcggtg taacgcatgg ctgctggcgg atcgccgtcc atggaaccgt
     2941 tgtttccgtg catctccacc aaaatctcgc ggttcttcca gtcctgactc atgcggacca
     3001 tggcatcata aatagaggaa tcaccgtgcg ggtggaaatt ccccatgata tttccgactg
     3061 acttggcgga cttgcggtaa cccttgtcaa aagtgttgcc gtccttattc atggaataaa
     3121 gaatccgacg ttgcacgggc ttgagaccgt cacgaatgtc cggcagggcc cgctcctgaa
     3181 taatgtattt ggaatagcga ccaaaacgct ctcccatgat gtcctcaagg gacatgtttt
     3241 gaatgtttga cataaattaa gatacaaagg gacgattcag tcccgtgttc agttagacag
     3301 actagctgaa cattcctttc tttgtttctt ggtggaaagt taaattttct ttctttttta
     3361 cttttttgat aatcacctta agtagtggga acggaagaga ccttatatag caatttctgt
     3421 tgctatatcc ttaactaaac attagttctt tacctaagtt ctctgataaa agaaagcaat
     3481 catatcccct actctatcat aaagattatc atcaacatat gctaatttct caatttctaa
     3541 ttcctcatca tcaatcaaat tttcttgata agcttgagca tattcaccac acgattttag
     3601 ataatccatt attaaaacta actcttgctt ctgttgagaa gaaaggactt ttcctttata
     3661 gagagtctcc tttatgaatc gacagtagtt tgagtgctct tcacaccaat tgacattgcc
     3721 atttgcttga gcttcccagc gaagtttttc taattgtcga agtaattcac cttgtaaagt
     3781 agaagaaatc ccgtatttag gcacatctgc tcgccaaatt gaacgtagaa cctctgtata
     3841 ctgagaagca taaggaactt tcttaagttg ctcgatagtt agcttttttc ttaaaaactt
     3901 tatcatagct actcatccac tttccactgg cttgcttgcc agcttctaaa gtcatcgaca
     3961 tctgttttga ttaatttcaa acaggcatta aggacaaagg catcatcaag tagacctgct
     4021 ccaaggatga aatctggtaa ggcatcaata gggctgaaaa aataaatcaa agcacctata
     4081 attgcgagga ttgtcccttt gggtaacttg ctgtaatctc tacggatata gcttcgcacc
     4141 atggaaatca agcctggaat ggccgcaaac ttatctccac caaaaggcat acgagacagt
     4201 ttccgttccg tgctatgtaa aaaatgttct aattttcctt gctcagatag caagttttct
     4261 gcatgttgcc gagttttgga agattgccaa atcttcaatg cttggtcaaa tttctcttcc
     4321 aactcctgtt tgtttttaaa tggcttgcgc tttcgagccc attcagacaa ccgtttttga
     4381 aaacggtcag ttaattttgg cataaaacac ctcacatagt ttgcttgtgc tagagttaca
     4441 aatcctctgt gcgatagaga ttgtatcctt catagtaata agaatggtcg atgcctttga
     4501 aataagtagc ctgaccaaga tcttccgtta aggcttgcaa taacagatat ttaagctctc
     4561 ctgttgacac atggcttcta accattgcat tgaaatattc atctttatca atgctattcc
     4621 agtcaacaac cttacccaaa ctatcccgta gcatacaatc caaccagata cgcatactgc
     4681 gtccatttcc ttctcggaat ggatgtgcaa tgttcatatc tgcatatttt tcaacgattt
     4741 cgtcaaaggt ttcatgaggt agcttgtcga tataggccaa agactgctcc agaaagattc
     4801 gtggagcaaa ttgaaaatta tccttggcaa tattaacgtc gcgaatctta cctgaaaagt
     4861 cgtaaatctc ttcaaacaag gtctgatgaa tgtgtgccaa acctgcaaag gttccaactt
     4921 ctatctggaa taactgacca gtttcgaaca gttgagctgc ttttttcttg ctgatttgtt
     4981 cttcaagacg agctaattca gccgaatttt caatccccaa tttattttct aaaaccatat
     5041 ggcacctcaa cttccctgag attatttagt aaaagctgtc gcttcctcca aggtaaactt
     5101 cacattgtcc tcaatccact tgcggcgtgg ctcgaccttg tcgcccatga ggacagatac
     5161 acggcgttca gcacgggcca ggtcttcaat ggtgacacgg atgagggtac gggtttcagg
     5221 gttcatggtt gtttcccaga gttgatcggc attcatctca ccaagaccct tgtagcgttg
     5281 gaggataaag cccttgccaa aatccttgcg gagatcttct aattctccgt cagaccaagc
     5341 ataagcaatc ttttctgtct tgcccttgcc ttttgacatc ttataaagtg gcggaagggc
     5401 gatataaacc cgtcctgctt ctactaacgg tcgcatatag cgatagaaga aagtcagcaa
     5461 gagagtctga atgtgggcac catccgtatc cgcatcggtc atgattataa tcttgtcata
     5521 gttgacatct tccagcgtaa agtctgaacc aacacctgca ccaatggtgt aaatcatggt
     5581 attgatttct tcgtttttga ggatgtccgc catttttgcc ttggcggtat tgataacctt
     5641 accacgcaaa ggtagaatgg cttgaaactt gcggtcacgg ccttgtttgg cagaacctcc
     5701 ggccgaatct ccctcgacca gatagagttc atttttggct ggatttttgg actgggctgg
     5761 agtgagtttc cctgacaaaa ggcccttatc cttcttgttt ttcttaccgt ttcgggattc
     5821 gtcacgggcc ttacgagcgg cctcgcgggc gtcacgcgcc ttaatggctt tacgaactag
     5881 atttgaagct aattccccat tttccaaaag gaagaatgtt aacttgtccg atacaatgcc
     5941 gtccaccacc ggacgagcaa gtgggcttcc caacttgtcc ttggtctgcc cttcaaactg
     6001 caaatgctct tctggcacaa ggatagaaag gaccgcagac aaaccttcac ggtagtcaga
     6061 gccttccaag ttcttgtcct tttccttgag caagttggtc ttgcgggcgt agtcgttcat
     6121 agccttggta atggctagtt tgagacctgt ttcgtgggta ccgccgtcct tggtccgaac
     6181 gttgttaaca aaggacagga tgttgtctga ataaccgtcg ttgtactgca tggccacttg
     6241 aacttggaat cctgcatctt ctccttcaaa atagaggact ggtgtcagag tttccttgtc
     6301 ttcgttgagg taggaaacaa agtcctgaac gccattttcg tagtggtact cctcctgctc
     6361 acctgttcgc tcatctgtca gagtcatggt gacttgtttg agcaagaagg ctgattcttt
     6421 caggcgttcg gcaatggtat tgaacttgaa gtccgtcgtt gaaaagatgg tatcgtcagg
     6481 cataaaggta acttttgtac ctgtttttga ttttggagcg gtgccaatct tctctagggt
     6541 cgtgactggc tttccgccct gctcaaaccg ttgcttgtaa acagctccgt cacgggtaat
     6601 ctcaacttcc aaccagctag acagggcatt gaccaccgaa gaaccaaccc cgtggagacc
     6661 acctgaagtc ttgtagccac cttgaccgaa cttacctcct gcgtggagaa cggtgaagat
     6721 aacttcgact gttggtttgc ctgttgcgtg cataccaaca ggcatcccac gtccacggtc
     6781 ggaaacagac aggctaccat ccttgttaat agtcacgtca atccgatcac cgaaaccaga
     6841 caaggcttca tcgacagcgt tatcgacaat ctcccagacc atgtggtgaa gaccattccc
     6901 gtctgttgag ccaatgtaca ttccagggcg tttgcgaacg gcatctaggc cttccaatac
     6961 ctgaatggca tcatcattgt aattatttat atcaatctct ttcttagcca aaattgacct
     7021 ccatacttat catcctttct atattacaag ttttttagca tttttgcaaa atatttctgt
     7081 tacctatcgg ctgagacaac tcacaaaata agattttgga ctaaattaga tgaaaatatg
     7141 ctataatgaa aacatgttag tcaatcttat tttactattt attgcatatt tgttgggatc
     7201 tatcccgtca ggactttgga taggtcaaac ttttttcaat atcaacattc gtgaacatgg
     7261 ttcgggaaat actggaacaa ccaacacatt ccgtatttta ggtccaaaag ctggtacgat
     7321 tgtatttgta attgattttc tcaagggaac gttggcagcc ttgcttccgc tgatctttca
     7381 tgcccaagga atttctccga ttgtatttgg gttaatggct gtactggggc acactttccc
     7441 tatctttgcc caattcaaag gtggaaaggc ggttgcaaca tctgctggta tgcttccggg
     7501 cgtcgcacct gctttctgtc tctatctagt catcattttt gtgacttctc tttacctcac
     7561 ttcgatggtt tccttctcta gcgtcttagc agcagcttta gcaatcttag gagctctgct
     7621 atttccagca ataggaatca tcctgccaag ctacgactgg ctctttacag tgattatcgt
     7681 ctttcttggc agttttgtca tcatccgtca caaggaaaat atccagcgga ttttgaaaaa
     7741 agaagagaac cttgtcccat tcggactcaa tctaaccaaa cagaaaaagc gagcttagta
     7801 ctcgctttta gtttaccttg acttcgacca cttctattct ctccccacca agcaaaatca
     7861 aatggcagtc tacacgatct atcttgtagg cttttttcaa tgcctcggca tagagttgca
     7921 tttgagcttg gtaacgttgg ctgagttggc ttggttggtc atatttgtct gtcttgtaat
     7981 caaagaggac aatatgatca tcatatagta ggtagccatc tataatccca cgaaggacaa
     8041 agttttcctg agatacagaa tctgtctgca aacttgcaaa tggtgcttct cggtggagtt
     8101 tgtccgtatt ggctagaatt tctcttccta agtctgtatc aaagaaatcc aaaatcatct
     8161 gaacattgat tttatcttta atcgcttgct cagcatgaac agcttctagg gcttctctta
     8221 ccgtatcttc tgtcaccaac caagacagat ccaagcgttg catgagttca tgcactgctg
     8281 aaccgacttg ggctccagtg attttaggtt tcttggagaa atctggcaag ttgaaggtcc
     8341 gttttggctg gtatttttcc ataacttcca tgccttcttg ttccaaaata ggctcataga
     8401 gtttcttgat ttgacttgga gtccgtaaac ttggcaattc aatggcaacc ttatagcgtt
     8461 cgttcaactc ttgaacagaa gacaactggt ccaaggcctg agcaatgtct tctgattgac
     8521 gaatatcttt aaggctggca tcttctagct tactcttcaa tgtaagtttt ccaatcttct
     8581 cctctgtcaa atcctcatcc gtcacaaaga ctttcttgaa gtgcaagtct tctcctgaga
     8641 aggcctcatc aatggctaga atccagtctt ggaaggtcgc cacgctttca cgagttgatt
     8701 gggctagtac gccatctgcc tttttgccat cgtatttttt agctaactta tcagcattgc
     8761 cctttccaac cagatacagc ttcttctcgg cacgcgttag tgcaacataa agcaaccgca
     8821 tttgttctga aagattggca atttttagct cttggagatt atcttgataa ggaagggtgt
     8881 tcattaagac tcgcacctga ggtaatgggc tattcacctt atctttcata tccgctaaat
     8941 attggatacc tagaccattt ttccggctga tgatgactga ctggtaatgg tcttccaagt
     9001 tgaatcgttt atcgatgttc atgaggaaga catatttgaa ctctagacct tttgacttat
     9061 gaatggtcat cagctgaaca gcattttgcg gtagaaactc ttgtacatct gccaagtcct
     9121 tgtcatttgc taaggcacgg tcaatcatga cgatgaaacg agacaagccc ttgtagcctg
     9181 ttttttcaaa ctggttggca cgcaaaccta gggcatatag atttgcctga cgcttgctgc
     9241 catttggaag agcaccgaca tagtcatagt agaatttttc attgaaaatc ttccaaatca
     9301 ggtcataaat agaatgcatt ttggcaaaag cacgccagtt ttccaaaata gataagaaat
     9361 ccttgatttt cttcttcaac tctcctgaca taagttcagg atgttgccca tttgtttgct
     9421 gggctatttc cattttctgg taaaagaaac ctgtcccagc ctgcaaggaa atccgtgtca
     9481 gctcatcctc atcgaatcgg aacataggcg atttgagaag agcaaccaag gcatagtcat
     9541 tgagtggatt attgataacc cgcaaggtat ccagcataat catgacttct aaagattgca
     9601 gataggaggc tgctccgcca tctgccacaa ttggaatccc atgtttttca aaaatggata
     9661 taatgaggtc attgtgcgtc cgtttttgca ccaagagagt gatgtccttg aagtctgctc
     9721 cttcttcatt gtgaagacga ataatctctt ttgcaacaac ctcgatttca ccagcagtca
     9781 gaggtgtttc ttcctcagca tccgttgaag agtttgcgct atcctgctgg tcgtaaatca
     9841 agtattccat ctcatgcttg ggctgggcaa ttttttgacc aggactacca gccactagac
     9901 tgtgggtttc atcatacttg atttccccta cttgacggtc catcaggcgc gtgaaaatag
     9961 catttgtcgc ctccaagacc tcaatctgac tacggaaatt ttccttaagc aaaatcaatt
    10021 ttccagcctg agaatctgcc tggtaaagtt caaatttctc ttggaaaatc atcggatccg
    10081 cctgacggaa tcgatagatg gactgcttaa tatcgcccac cataaagcgg ttgtgaccgt
    10141 tagacagcag gtccagcatt cgctcttggc tatggttgtt atcctggtac tcgtccacca
    10201 tgacttcgtg gtatttttct tggaaaaact ggcgaatgtc cacattttct tctaaaatac
    10261 gaatagcgaa atgcccaata tcgccaaatt caaaagctgc ttccttgatt ttgacatcca
    10321 gataagcctg cgaaaaatcc aagacaaagt cacgtaataa tatcagcatt ggcaaagctt
    10381 gaatctgata gtctttcagc agggttaatt cataaacttc ctgccccaaa tctcgtagtc
    10441 cagagataat ctggctcttg ccagcattgt attcttcttt aaaggctatc aaatgctcat
    10501 cttttggtcg attggcattg gtcagaccct tgcctctgga ctggtcgttg ataagaagga
    10561 ctttttcaac ccgctccatc aagtccttct ggtccagact atctaaacct gtcagcaaat
    10621 ctaaaacttc ttccacattt gcaaaatact tggcggaacc aaagtcattt ctgccccatt
    10681 ccacatggta gcggaagaaa tctgcagctt gatagagctt gtctaacact ttttccttaa
    10741 agccttgctc taagatcagc tctatacgct cttgactgta caaatcagct tgaacagcct
    10801 gctctttcag ccatttagtt ggactgcttg tcgattggct aaaatcatgc acctgataaa
    10861 caacctgacg gaaaccacca ttatccttcc ggttgcctga aaaattgcgt accaattttc
    10921 ggaatgcacc attttcatcc tgttcaagat aatctgcaaa gagctggtca aaaacctctt
    10981 ttttcagact cgctttttct gtctcatcct gtaaaatccg aaactgtgga gaaatgccaa
    11041 ggctataacc gtaagtcgtt accaatttct gcgtaaagga gtccattgtc ccaatatccg
    11101 ccttggtcaa atccgccaac tgggctgaca aatgccgacg caagtccata tccatcgtct
    11161 ccgcaatggt ttcattgaga tttttctcga tccgctcctt caactcacca gccgctttga
    11221 ctgtaaaggt cgagataaag agctgatcaa tccctacgcc acgcttcaac ttatccaaaa
    11281 tccgttgaac catgacgaag gtctttcctg acccagccga tgcagagacc agaacattct
    11341 gaccgtgcgt gtagatggct tcaatctgct caggtgtgcg tttttgttgc ttatcagaat
    11401 tggcttccgc cagctgcaca gccttgattt cttctgcgct taaaaattgt tcaaaagcca
    11461 ttagtcctga cctcctttca ttcgttccat ccaatcttga cgcttggcct ccttgaccaa
    11521 ccgccgtgcc atgcccatgt gccgatccgc ctcaaaacca gtgattgcct tcagctgctc
    11581 acctgccacc gaacgcccat ctttggtata agggttaata gcaaagcgac cagccagaat
    11641 gtccatggca gcttgtttgt agagttcttg gttgtggttc aataaaaccg caaactcatc
    11701 ttccgtgtag agttggttac gagtctgata aaaatgattg agccccagac tttcctcctt
    11761 caagaaaagc cccttataaa ccaagctagt attggcagct ccttctagct gttctaaatt
    11821 cttcgtgtct tttaatttga taatcggatc ctgcaaatgc aaatacatag ctccaaaaac
    11881 aggtttatcc ttggtttcat ccagctcttg taaggctgcc aagtaggtta ccaactgagg
    11941 ttttagacca ttgtaaaaat ccccaactga aaaagattgg tcgctggact tgtaatccac
    12001 aacaccaaca gcctgattga tttgtaaggt atccaagcgg tcaatggtac catttacatg
    12061 cacactcttg ccattttgaa ggtcaaaaac tagcgcctta tcctgacgga aactcttttc
    12121 ctgaccatca atttcaacca aatcattatc ccgcaaaata gtcgcactgg aacgagcaat
    12181 cttatccagc acctcctccg tataacgagc atccgcatct tggttataaa acatagcaaa
    12241 ttctgcctcg tcacgcgtac gcaggatggc cttatccact ttttgatcaa aatctagctc
    12301 agattggtcc atgaccactc gttcaaaaat ccgatgcaag aagagcccgt gttgaaaggc
    12361 cgtcggatgg atggattcct gttcccgcaa gcgaagaaca ttacggacaa agtaaagata
    12421 ttggttattg tagaaattgg tcaagctgga tgcagaaaga ttgagcggct tatcctctgg
    12481 atataaagca gccaaggtat cagctgcaag ctgtttagaa gtaatatcac cagtaatggt
    12541 cggaatttca atgccttgcg actccaattt cttcttcaaa tggcgaacca agactgtcca
    12601 gaaggccctc tgcccttccc attcttcatt atcaagagat ggtctttctg actcaatcaa
    12661 acgggataag agactcttgt agtgaccgat gtcttgcgga ctaagacttt taatccgacc
    12721 acgttcttct gacgaaagcc ccatttcttt tagaattttt acataaggag aaagactatc
    12781 ttcgccttca ttataaatct gaggagtgga aataactaac tgttccgtcg cagcatttag
    12841 cagagacatc atggcagcat ggttcttctt aatattctct cggctgacca aatcgaaacg
    12901 tgaagaactt gccgaaacaa gattgacttt ttccatctct tcttccgtca acagactggt
    12961 attcttggca acttttggaa aattggactg gcccattccg atagcataaa catactttgc
    13021 agtgtgtggc tcaatcaaat cataggattt gacattgacc acatcaaccg ttgcaggaac
    13081 ggtgcgatag tgactggcct gcatgccagc ctgtaaaata gccagaaaat catccatttt
    13141 caatttttct tttccgaaaa tctgatgaaa attctcaaga agatgggtaa aacttttcca
    13201 gacctgctct tctttttctt gctctacttc actcaaattt cgagacattt tttccatatt
    13261 tttaggaaac tcaattgcct ccaaaaatgc cataaatttc tcaagcaagg tagctccaga
    13321 ttgtggtcca gccttaaaca gctgattcaa aggctccata atcttagcac gtagaggttc
    13381 taagacagcc aaatcataga caagcctttt ctccttaacg acttcagcgt catagtccgc
    13441 tctgccattg accgaaaaag ccctcgaaaa agcagcctgc cccttcatat ccgcaaagag
    13501 gatgtaggac tcaaacaagt ccagctcctt ttgggaaatg ctggcgtaca aaccagattt
    13561 gaggagattg agcaggtctt ccgcacggaa acgatagcga cgcaagcgct ccaaggactc
    13621 cacaaagtgg actaggggat gatggctcat ctcctctgcc ttaccaaaat agtagggaat
    13681 atcatatttg tcaaaaattt tgccaatctg caacttgtag ctatccacat cacccaagag
    13741 caacaagatg tctttatagc gagctccttg gtgtatgtgt tggcgaattg ccgttgctac
    13801 ctgctccacc tcttcttttt ggttaacgac ttcccatagc tggatttttt cttgatctgc
    13861 tggagtcaag tctatcatgg tcccgctgta gtcataatag gcttccatat tctttgaaaa
    13921 tttaccaata ctgtccaaga ctggctcttg accaatataa gtagccttag tctggaactg
    13981 cgctgatagc tgacgtaaaa agtcaacgtt ggcttgatag acattgcctt ccgcatagat
    14041 gacttgcaca gctttcttgc tggcatatac accaattagg atttccgaca cccgttcatt
    14101 taaagcactt actaaagctt cttcttctgc cgaaaaacga gaaaatccgt ctaccaccag
    14161 cacaatgttc ttcaactgct catccaactg accagtttct accaagccag tcaactgtgc
    14221 taacttagac tgatgctcaa agctttcttt ggacaaaatg tctgttacag ccagaaaaat
    14281 ctttaccaaa tcagcctgct tatctggtga gtccatggct tccaagtcca aaatagacat
    14341 atttgcccgt tgcaattctt tgtataaagc aactagctgg ttaatgaaac caaaatctct
    14401 ctgcaaacga ccatagactt tcaagtcgcc atcttcaaat tgcgatagaa cacgaaagaa
    14461 aatcattgcc agaccaacat catccagcgg ttgacctgct tctttcctat caatcatcaa
    14521 atagcgggcc aattgcccaa aacgggtcac gataatatca aaagttgcct gttctggcag
    14581 gtattccaag accttgcgtt ccatctcaaa ggatagagag tttggagcaa tataaaaaac
    14641 tcgcttagct tccttagcaa attctgccga ggtatccgtt aaatactgcg tcagaggatt
    14701 gcgaatatct gtatagacta atttcatatc aaattctcat gctttcgttg aatatactat
    14761 atctagtata tcaaaataag acaaaaaaat gggagcgaga aagaactcga ccgaataaaa
    14821 aaagagctcg tctcccaccc ccacacagct ccaacagtca gagtagtgac tgttggaggt
    14881 tggaaatgga gcgaactcta agatgtaact ctggactttt tgcacagcct cattttttcg
    14941 gaaaggcaat cctgcatgtt acgtacaatt cttatacttt ctatatgggg gaataaagtc
    15001 tgtataaaga attttgacta atcttcgtta cgacgacgtt ttcttgcaaa cgcaagtgtt
    15061 gcgacaagca ttgctgtacc aagcgcacct gccacagatg aagcctcacc agtatttggc
    15121 aattgagctt tacctgaagc ggttttacct gcttgaggtt ttgcaggagt ttccttctca
    15181 ggtgttgttg gtttattaga aagtttgcga taaatatgtg tcgtgttacc ttcttcatca
    15241 actacagtac gcacatactc gtaacctgaa atttgacgtt ttggtgttgt cccatcctct
    15301 tgtggagcaa tagggttacc ttcttcatca acgtggttag tcacaacttt cttagcaggt
    15361 gttttcttgt agatgtgagt tgtgttgcca tcttcgtcag taacagtttt acctgtaaat
    15421 tcgtaacctg ggattgattt gtttggtttt gttccctctt cttgcggcgc aacagggtta
    15481 ccctcttcat caacgtggtt agttacaact ttcttagcag gtgtttcgac tttacggtaa
    15541 acgtaagtca caactgtttc accttctaca actttaccat tttctgtacc gtcaacacga
    15601 accaattcat actcttcacc tttgaaagta attgtcttag gtttgttgtc tgtagtgtcg
    15661 tatggcgtac cttctggaga agttggtgta tctgttacag gatccttgat aactgtgcca
    15721 tcttctgtta catagttaac aacaactgta ccattcttaa cttctggtgt tttcttgtag
    15781 atgtgagttg tgttgccatc ttcgtcagta acagttttac ctgtgaactc ataacctggg
    15841 attgatttgt ttggttttgt tccctcttct tgcggcgcaa cagggttacc ctcttcatca
    15901 acgtggttag ttacgacttt tttaactgga acataaggaa ttggtgtatc aacacctgga
    15961 ttttctggtg ttggtggtac ataaccctta cctggatcat ttggatcaat tggtttcaac
    16021 ggcgtgttat ccttaggatc aaccggtgta tatcctggaa cgtaaggaat atttggaacc
    16081 tcgccatttg ttcctggtgt cgttggatcg attggctcgt ctggctctgt tgggtcaaat
    16141 gggtaaggta cttttggacg gtttgtttct ggtacatttg gaatctctgg aatccagttt
    16201 gcaactttct gataaacata agttactgtg attgttcctt cgataacttt accattttcc
    16261 tcaccatctg tcttagatgg aacaaggaca tagcgtgatc catcttttgt gatgatttcg
    16321 tttggtttct tgtcagttgt agtataagca tctccaaccg gtgcatcaga cacatccgtt
    16381 tctggatctt taatcacatt accttctgta tctttgtaat ttacaactac agaacctgtc
    16441 actgctttat agacataggt aacttctttg ttaacaccag cctcaatctt gcctgttgtt
    16501 gggtcaatac ctttcgcagt attattacca acttcaatca agttatttcc cttgccaact
    16561 ttaccaaccg gataatcacc agcaggaaca agtttgtatt ccttgccttc aaaagtgatg
    16621 gaagctaatt tctgatccaa gtcggtatca taattgtaac caggtttcgc atctttttca
    16681 tctgaaacag gagctttgat tactttacca ttgatgtcaa cgaagttaac attaacgcta
    16741 ccagcttttc gtaaacatac ttaacagttg tcgtacctgc aactactgta ccggttgtct
    16801 tagctgaatc agacttaact tctttgtaga agtagactgt cccatcagca gcaaccaagc
    16861 tggctggtct acggtccaca tctgtattat actctgtgcc aagagctgac ttaggagtat
    16921 ctacaactga atttacaatt tgttttccgt cagtatcgta gtactcaaca atgacatcac
    16981 cgaatttagg atttactttg tagacatggg ttgtctctac agctgtagcc actgaagcgt
    17041 ttcggagata ttgttgggta ccaaatggaa caaaaccatt attatcaaac ttatccgctg
    17101 tacctctcca ttggttttcg gtaattccca attcttttgc agttgtccaa acctgagtac
    17161 caatatagat acgtccatac tttcctccgg tatactctgg tttagttggg tcagtttcat
    17221 ctgtgcctga ccactgtgca acgacacgat atttactacc ttgagcattg gtagcacttt
    17281 ccttgaagac catgaaacca ttatcaactg tgtaaggaga taaaatagtt gcgttgatat
    17341 tgtaatcata tacttttcga tcaatagtat aaactgttgg agatgtcttt agcagcggta
    17401 tgaatcccgt cgtatcagtc ccagtccaat ctacggtacc cgtataagtt ggatccaata
    17461 agtacaatgt cataacggat tgattatctt caacaacctc acgaatagct ttataatatt
    17521 tattaccatt tttgtcagca ccgacaccag ctagcataag tgtgccttta ggataagcac
    17581 cttgaatagc attttgcgtt gttttcacat agtcataacc agtaaaagta cgtactttag
    17641 atgaagtaac cgtctgacct gcaatagttt gaagactgta agtcgccaaa actgtgccat
    17701 cttcagtaac atagcgagtc gtattaactt gatatgcagg cactacaact gtagaatata
    17761 ctgcatctct atcatcataa aatttcaacg aacctggaat atcagcggta gctgttgaag
    17821 tatcataagt caaagtaatg ttgctattct tcgcattaat cgtcttcgga taactaaaag
    17881 tcacactatt cccagcctca agtttatggc tttctaagac ttctccatct ttagtactca
    17941 ctagctccgc tagtacagtt gatgtagctg gatccgagtc cagggaataa cgtatgtaag
    18001 cgccgacagc agttccacca acaattgaac cattctggtt ccgattgtag gaatttaaat
    18061 catatgattc aaaagtatac caaccagatt cttttgtagc ctcaacttta tctcgaagtg
    18121 tatgaggagc aattgctgca ccatttggtt cagacattga aggtgttgct gttgtcgttc
    18181 tatctagaag ggtaccttcg ccatcaccaa ctttcaatgt tgatgcagtt gtatcaggtg
    18241 ctactgtatc aagtgctgct gttaagagac catctacagt gtatttttgc aattcattcc
    18301 ctagcgcctc gttggctgct ttaaccgctg cgacttgcgc ttcaacttgc tcaacagttg
    18361 cttctgagtc agccaaaagt gccttagctg ctgcaagttt tgtttgagca tcctctatag
    18421 cttttgcaag agttgcatct tcagttttag ccaactcttt ttgaccaaga ccagccaaaa
    18481 gtggtgattc tgatgttacc tgttcaagaa cagctttcgc tttttcaact tctgttgaag
    18541 tcgtagctac tgcactcgta ttttcagctg gtactagcgt agcttcagca tttgttttat
    18601 ctacttcttc tgcaacagct tctgttgaag caggcgctac actactggca atagttggtt
    18661 ctgatgaagt aacagcttcc tcagctttaa caacctgtgt accggcacct aaaactaacg
    18721 acacaccaag caaaacactt gctgcaccaa aatgatactt acgaatcgaa aattgttgtt
    18781 tcgtgccgta ccagtcaaat gattttttat ttgctttacg cataaaaaat cccccatata
    18841 aatattaatt taattaca
//
LOCUS       DASGCC010000029        18689 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.029, whole genome shotgun sequence.
ACCESSION   DASGCC010000029 DASGCC010000000
VERSION     DASGCC010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18689
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.029"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            339..1568
                     /locus_tag="U1404_000686"
     CDS             339..1568
                     /locus_tag="U1404_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM5347659.1"
                     /translation="MRKLMKNRGTIDSRVDYSLILPVFFLLVVGIISLYIAVSQDYPD
                     NVVQMVGQQIAWIGIGTVAAFLVMFFSTKFLWQITPYLYVLGLGLMVLPLFFYSPDLV
                     ASTGAKNWVTIGGMTLFQPSEFMKIAYIIMLSRVIVTFHKYYPNRKIREDFMLIGYMT
                     LFTIPVLILLALQKDLGTSLVFVAIFSGMLLLSGVSWKILLPTALTGIVLVGGFMLIF
                     ISPGGTTFLHNLGMDTYKINRIAAWLDPFKNAQSTTYQQAQSLIAIGSGGLKGLGFNK
                     TNLLIPVRESDMIFTVIGEDFGFIGGTVLIGLYLLLIYRMLRVTLKSNNRYYTYISTG
                     YIMMLLFHVFENVGAATGLLPLTGIPLPFISQGGSSMVSNLIGVGLVLSMGYQSRLAD
                     EKETNRSRRYRKITIKR"
     gene            1582..2121
                     /locus_tag="U1404_000687"
     CDS             1582..2121
                     /locus_tag="U1404_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEM5347660.1"
                     /translation="MTRVAVVLADGFEEIEALAPVDVFRRAHFDCQIVGLDSHEVEGS
                     HGIRVQTDQVFDGDLSSFDLIVLPGGMPGSVHLRDSESLITELQRAVASGKSVAAICA
                     APIVLDKAGLLDSRHYTCFPGKEKDIPSGILLEEDVVVDGPIITSRGAGTSLDFAYKL
                     VDLFGGDGESLAQTMVYHS"
     gene            2303..4255
                     /gene="gyrB"
                     /locus_tag="U1404_000688"
     CDS             2303..4255
                     /gene="gyrB"
                     /locus_tag="U1404_000688"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEM5347661.1"
                     /translation="MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEG
                     LHHLVWEIVDNSIDEALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVET
                     VFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVV
                     ADLEVVGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKR
                     EGVEQTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHEN
                     VVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVI
                     SVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRIVEKGILASKA
                     RIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATKTELFIVEGDSAGGSAKSGRDRE
                     FQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTD
                     ADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGVNQEQE
                     LQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIF
                     DMLMGDKVEPRREFIEENAVYSTLDV"
     gene            4344..6068
                     /gene="ezrA"
                     /locus_tag="U1404_000689"
     CDS             4344..6068
                     /gene="ezrA"
                     /locus_tag="U1404_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HEM5347662.1"
                     /translation="MPTGTIILIVSIVIILIIAYVACLIVRKRNDNLLVALEERKEEL
                     FNLPVNEEVEAVKALHLIGQSQVSFREWNQKWVDLSLNSFADIENHIFEAEGYNNAFR
                     FVSAKNAIDSIESQIDLIEEDIASIRHGLMELKEQEEKNSGRVKHALNLFDSLQEAVR
                     ENPDSYGETLPELEKQLKNIEVEFSEFVMLNSSGDPIEASEILDKTEEHMIALNQIMD
                     RIPSLIERVTKDFPEQLEDLESGYRKLVEQNYLFTEANIESQFQNIRVSIRENTALIV
                     SFDLDAAEAENEGIQAKIDHLYKVFNREIEANKEAVKISKNLPKFLEHVVQNTQLLDE
                     ESQRLNATYLLADSKLSRINQLKARLESIEIVVTESVEDIENPQVAYSILEERLDHSL
                     ASLKEIEEEQLVLADYLKSQELSENTARKKATLYINKLHTLKRYMEKRNLPGIPAEFL
                     TNFFRTSDHVEALIAELDYKRINIEVVNRLLENATYDMNQLEELAYLIVQNATLTEQL
                     LQYSNRYRSFDESVQKAFNRSLSIFEKDFDYQAAFEEISFALETVEPGVTERFVRSYE
                     KTREAIRY"
     gene            6120..6755
                     /gene="serB"
                     /locus_tag="U1404_000690"
     CDS             6120..6755
                     /gene="serB"
                     /locus_tag="U1404_000690"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEM5347663.1"
                     /translation="MTTGLLVMDVDSTLILEEGIDLLGEEAGLGAQVAAITERAMRGE
                     LDFEEALRERVALLKGLPVSVFDRIIKKIHFTPGAAELVSELKMRGYKVAVVSGGFHE
                     TVDRLAAQLELDYVRANRLEVVDGVLTGQVLGEIVTKDTKKACLEEWAAENGLSLSQT
                     IAMGDGANDLPMIQRAGIGVAFCAKPIVQEQAPYQINEKNLYKLIEILDSK"
     gene            complement(6786..7436)
                     /locus_tag="U1404_000691"
     CDS             complement(6786..7436)
                     /locus_tag="U1404_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347664.1"
                     /translation="MYQTILFDLDGTLTDSGQGILNSVAYALEKMGIEEPDTANLNRF
                     IGPPLYESFSRFYQLNPEDTQSAVDTFRVYFKEKGMFENQLYPGIIPLLEELRTAGKT
                     LVIATSKPEIFAKQILEHFGIAHYFDIIAGASLDSSRISKADVIGYAINQLEAFPKHA
                     VMIGDREHDIEGARMHQLPAIGVLYGYGNKQEFEKAGATMIVETVQDLKRVLLTTE"
     gene            7544..8671
                     /locus_tag="U1404_000692"
     CDS             7544..8671
                     /locus_tag="U1404_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM5347665.1"
                     /translation="MHILIAPDSFKESLSATKVAEAIKKGFSKVYPQAGYDLIPLGDG
                     GEGTVESLMQALSLDGTQTWVTGPFGDKIKVSYAVKDDLAVFEMAEIVGLASIPHERR
                     SPLFIKTQGVGELIVELVQNGVKRIFIGVGGSASHDGGIGMAAGLGVKFYNREGKEVE
                     AIGAHIGEIVSFSTEDMLVDLSQVRIDLVTDVENPLCGPAGATFVFAGQKGLAPAEFE
                     LVDKKMESFYKLVNPMLLDLAGAGAGGGMAAGLVQFAGARIQKGIDFVLDQLDFAHRV
                     TKADLVVVGEGRMDAQSLSGKTPIGVARRTPTGIPIIAICGSLKDDLPEFPFENICAA
                     FPIIASVESLEDTLQKAEKNLVRTAEQVARILQLGGQQRWN"
     gene            8662..8889
                     /locus_tag="U1404_000693"
     CDS             8662..8889
                     /locus_tag="U1404_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347666.1"
                     /translation="MELVKDVAIILFIFICLAKLVSVMRLSEKERGMEMNVIKANGAM
                     FFFNEKNERGRLLGILCLTCIIFSLIFILLY"
     gene            complement(8899..9351)
                     /locus_tag="U1404_000694"
     CDS             complement(8899..9351)
                     /locus_tag="U1404_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HEM5347667.1"
                     /translation="MNDLNTTILQKASGETRLNPDEQRLYMGTYRERVVLIVSFDDLS
                     SEVVGNKFDTICQKLANRYSPLFLKLSPALSDKQQISLLKIAQNFGITTAIIDEKIGQ
                     SPYALVFHTNHAVDNEEVSLESIFPNLISKPEEKKEDAKPSFWKKLFG"
     gene            9501..10808
                     /gene="eno"
                     /locus_tag="U1404_000695"
     CDS             9501..10808
                     /gene="eno"
                     /locus_tag="U1404_000695"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEM5347668.1"
                     /translation="MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTG
                     EHEAVELRDGDKSRYLGLGTQKAVDNVNNVIADAIIGFDVRDQQAIDRAMIALDGTPN
                     KGKLGANAILGVSIAVARAAADYLEVPLYTYLGGFNTKVLPTPMMNIINGGSHSDAPI
                     AFQEFMILPVGAPSFKEGLRWGAEVFHALKKILKARGLVTAVGDEGGFAPKFEGTEDG
                     VETIIEAIEAAGYEAGENGIMIGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQI
                     DYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKRVQLVGDDFFVTNTDYLARGIK
                     EGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAG
                     QIKTGSLSRTDRIAKYNQLLRIEDQLGEVAVYKGLNSFYNLKK"
     gene            11118..11339
                     /locus_tag="U1404_000696"
     CDS             11118..11339
                     /locus_tag="U1404_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation repressor RelB"
                     /protein_id="HEM5347669.1"
                     /translation="MSTVTIRLNQEEEVFFKSYAQLTGQSLSSLFKKALERDIEDEYD
                     LKIYHQAYDEYKADPETISHADFKKELGL"
     gene            11341..11601
                     /locus_tag="U1404_000697"
     CDS             11341..11601
                     /locus_tag="U1404_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002998538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5347670.1"
                     /translation="MYHLEYSKKAQKQIKKLDRQIQRLLFAWIDKHLEGTDNPRANGK
                     GLTGNHANEWRYRIGDYRLICDIQDDKLVILALEFGHRKDVY"
     gene            11768..12409
                     /locus_tag="U1404_000698"
     CDS             11768..12409
                     /locus_tag="U1404_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347671.1"
                     /translation="MIEWIFFDLGSTLLDEEAAYGYYIDKCVKKLESLDIEVSSDSYK
                     KKMVEYAHKSLDPIRATWHYFAPTEPRPLWTNEGVSLYPETIDALEKLSQNYRLGIIA
                     NQSSSIRELLKEWGIESYFQLIILSEEVGLSKPNTAIFTLALQKTNIPADRVVYVGDR
                     YDNDILPAKSLGMWTVRILTGFGKHASENEKLKSDWVIPSLQEITNIFEQTKN"
     gene            complement(12442..12627)
                     /locus_tag="U1404_000699"
     CDS             complement(12442..12627)
                     /locus_tag="U1404_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347672.1"
                     /translation="MNPVDLFNQVKELIANKDFDGAKQFIEENKDQFGEYLEQAKGLL
                     SGSEGVNGLLDKVKGLF"
     gene            complement(12691..13695)
                     /locus_tag="U1404_000700"
     CDS             complement(12691..13695)
                     /locus_tag="U1404_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEM5347673.1"
                     /translation="MAIYFGTYTKRESKGIYKANFDSETGQLSNLELVTEEPNPTYLA
                     FDKAGHLYSVGAENGLGGIAAFNAEYTLLNHVVSEGAPLCYVAVDEARDLVYGSNFHK
                     GQLLVYKRLADGSLELADVAQHEGSGPHENQASAHVHFSDLTPDKFLVTCDLGCDQVV
                     TYKVSDQGKVEKIATYQAAPGSGPRHIVFHPVAKIAYLICELNSTIEVLIYDGWGQFE
                     HLQTVSTLPEDHTGFNGTAAIRITKDGKFIYGSNRGNDSIAVYKTLADASLELVEIVP
                     TNGKTPRDFTLSPDEKHLIVVHQDSDNATVFERDAENGCLTELSHDFYVPEAVCVTFL
                     "
     gene            13831..14997
                     /locus_tag="U1404_000701"
     CDS             13831..14997
                     /locus_tag="U1404_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000435446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM5347674.1"
                     /translation="MEDKHQKFSLTWFFRLFLNSQAVTFLLVTLLTFLTIFIFSKISF
                     LFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKHKISRTVGISILFVLISLLIIWG
                     LAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV
                     AYAQKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWR
                     EPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP
                     YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITIL
                     FVLLTAGQMYGVLGVLLGIPIYASIKVLVKAAFEWYKAHSSLYEDEENEVVNEQ"
     gene            14987..16216
                     /locus_tag="U1404_000702"
     CDS             14987..16216
                     /locus_tag="U1404_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM5347675.1"
                     /translation="MNNSEKMLVCLDQQDLDKADKYFKRALVQDDSETLLSLAAYLEG
                     IGFFPQARQIYEQVKEEFPEVLINLAQIAFEDGLVEEAFRYLEEISEDSSIYVEALLV
                     KADLYQAEGLSDVACEKLLEASYLSDEPIILFGLAELDMELELFNEAISYYAQLDNRE
                     IYELMGVSTYQRIGIAYASLGKFEAAIEFLEKAVELEYDDQTVFELAALLFEREEYQK
                     ANLYFKQLDTINPDFEGYEYAYAQSLHAEHKIDDALVMTQKGLAKNDFDANLLLQASQ
                     YAYELHDEAGAEDYLLRAKEVADDSNELALRLSNLYLEQERFEEVVALFDEEVDNVLA
                     RWNKAKAYQALERDDEAIALYDELAGELAENPEFLADYVAVLRQLGRLDEAKEQASRY
                     IQLVPDDLAMQEFLNEE"
     gene            16220..16936
                     /gene="budA"
                     /locus_tag="U1404_000703"
     CDS             16220..16936
                     /gene="budA"
                     /locus_tag="U1404_000703"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HEM5347676.1"
                     /translation="MQVNRLFQYNTLGALMAGLYGGSLTVGELLEHGDLGLGTLDSID
                     GELIVLDGKAYQAKGAGEKPEVVEVPADMKVPYAAVIFHEAEVIFKQRFEMTSDELHQ
                     RIESYYDGENLFRSIKIKGTFSHMHVRMIPKSAFDVRFAEVASRQPEYTAENISGTIV
                     GIWTPEIFHGVSVAGYHLHFISDDLTFGGHVMDYVISEGMVEVGPVDQLDQRFPVQDR
                     QYLFAKFNAKEVREDIDKAE"
     gene            complement(16962..18620)
                     /locus_tag="U1404_000704"
     CDS             complement(16962..18620)
                     /locus_tag="U1404_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_147463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEM5347677.1"
                     /translation="MSFDGFFLHHMTAELKANLEGGRIQKINQPFEQEIILNIRSNRQ
                     SHKLLLSAHSVFGRVQLTQSDFTNPKVPNTFTMILRKYLQGAIIEEIRQLDNDRILEF
                     SVSNKDEIGDHTQATLIVEIMGKHSNIILVDKSEQKIIEAIKHVGFSQNSYRTILPGS
                     TYIRPPETHSLNPYTVSDEKLFEILSTQELSPKNLQQVFQGLGRDTASELASHLQTDR
                     LKNFRAFFDQATQPSLTAKSYAALPFANSPENQPHFESLSSLLDFYYQDKAERDRVAQ
                     QANELIKRVASELEKNRKKLVKQEQELADTETAELVRQKGELLTTYLHQVPNDQASVT
                     LDNYYTGQELEIELDVALTPSQNAQRYFKKYQKLKEAVKHLTNLIEETKATIVYLESV
                     DTMLGQASLAEIDEIREELIETGYLKRRHREKIHKRQKPERYLATDGKTIILVGKNNL
                     QNDELTFKMAKKGELWFHTKDIPGSHVVITDNLDPSDEVKTDAAELAAYFSKARHSNL
                     VQVDMIEAKKLHKPTGGKPGFVTYRGQKTLRVTPTEDKIKSMKI"
BASE COUNT         5396 a         3334 c         4290 g         5669 t
ORIGIN      
        1 gtgcgtgatt gccaaaatga ttgccattgg tttacatact catgaattga gcaaacttat
       61 ggggtgtgtg aaggtaaagc attatatttc agcctgttcg aaggtatgaa gatatacgta
      121 ttttatgatt tgtgcactag taatactctt cgaaaatcaa aattctccgt tgtcaacttg
      181 ccttgatgaa ctccagttct atcttcgact tcgtttccta ggctactttt gattttcgtt
      241 gagtataaat cgtatccccg ctgatgtaac tagattttta gtttcaatga gagatgattt
      301 ctgctataat ggaacgagta agaatttgaa gtgaaagtat gaggaaattg atgaaaaata
      361 ggggaacaat cgatagtcga gtagactact cacttatttt accggtcttt tttttattag
      421 ttgtggggat tatttctctc tacattgcgg ttagtcaaga ttatccggat aatgttgtac
      481 agatggttgg tcaacaaatt gcttggatag gaattggaac agtggcagct tttttggtca
      541 tgttcttttc cactaagttt ctgtggcaaa tcacacctta cttgtacgta cttgggctag
      601 gacttatggt attgcctttg tttttctaca gtccagactt agtagcgtca acgggagcaa
      661 aaaactgggt aacgattggt ggaatgactc tttttcaacc atccgaattt atgaaaatag
      721 cctacatcat tatgttgtca agggtgattg tcacctttca taaatattat ccaaatcgaa
      781 aaattcgtga ggattttatg ttgattggtt atatgacact gtttactatc cccgtcctga
      841 ttttgttggc cttacagaaa gatttaggaa cctccttagt atttgtagca atctttagcg
      901 gaatgcttct attatctgga gtttcttgga aaattctatt accgactgcc ttaacgggga
      961 tcgttttggt tggtggattt atgctgattt ttatttctcc tggtggaaca acatttctcc
     1021 acaatttggg gatggatact tataaaatca atcgtattgc agcctggctt gatcccttta
     1081 aaaatgccca atcaacgacc taccagcaag ctcaaagttt gatagctatc ggaagtggtg
     1141 gcctaaaagg actaggtttc aataaaacaa atcttcttat acctgttcga gaaagtgata
     1201 tgatttttac ggtgattgga gaggactttg gttttattgg tgggacggta ttgattggac
     1261 tatacttgtt gctcatttat cgaatgctgc gggtaacgtt gaagtcaaac aatcgatact
     1321 acacctacat atcaactggc tatatcatga tgctgttgtt ccatgtgttt gaaaatgttg
     1381 gcgctgcaac gggtttgttg cctttaacag gtattccttt gccgtttatc tcccaaggtg
     1441 gctcgtccat ggtttcaaat ttgattggtg ttggtctagt gctgtcaatg gggtatcagt
     1501 cacgactagc tgatgagaag gaaacaaatc gatcacgtcg ctatagaaaa attacgataa
     1561 aacgttagaa agttggttta tatgacaaga gttgcagttg ttttagccga tggttttgaa
     1621 gaaatcgaag cattggcccc tgtagatgta ttccgtcgag ctcattttga ctgtcagatt
     1681 gttggtttag atagtcatga agtggaggga tcgcacggta ttcgtgttca aactgaccaa
     1741 gtctttgatg gagacctgtc ttcctttgat ctgattgttt taccaggagg aatgccaggt
     1801 tctgttcacc ttagagattc agagtcacta attacggaat tgcaaagagc ggttgcatca
     1861 ggaaaatcag tagcagcaat ctgtgcggct ccaattgttc tggataaggc cggtttgtta
     1921 gatagtcgtc actatacatg tttcccaggg aaagaaaaag acattccgtc aggtattctt
     1981 ctggaagagg atgtggtcgt tgatggtcca attatcacta gccgaggtgc tggaacaagt
     2041 ttggattttg cctataaatt ggttgattta tttggtggag atggggaaag cctagctcaa
     2101 acaatggttt atcatagtta aagtaatgaa gaagatggag ctaatgtttc ctcttctttt
     2161 ttctatcaaa atattagaaa atatggtata ataaagggta ttcgttagaa tgatttttgc
     2221 tctaaaaata tgtttcgctt ttatccagat ggattggctt ttctattttt aaggagcaac
     2281 aaatagaaaa taaggaaaag aaatgacaga agaaatcaaa gatttacaag agaaggctca
     2341 agaatatgat gccagtcaga ttcaagtctt ggaaggtctt gaagctgttc gaatgcgtcc
     2401 agggatgtat atcggctcaa catctaaaga aggtctccac cacttggttt gggaaattgt
     2461 cgacaactca atcgatgagg cgctggctgg ttttgcggat aaaattgaag tttatattga
     2521 gccagataac tccatcacgg ttattgataa tggacgtggt attccggtag atattcagga
     2581 aaaaactggt cgtccagcgg tagaaactgt ctttacagtg ctccatgcag gtggtaaatt
     2641 tggcggaggc ggttataagg tctcaggtgg attgcacggc gtaggttcat cagtcgtaaa
     2701 cgccctatct actcagctag atgtccatgt ctacaaaaat ggtcaggtat atttccaaga
     2761 gtataaacga ggtgaagtcg ttgcagattt ggaggttgtt ggagaaacag accgttctgg
     2821 tacaacggta cattttacac ctgatccaga aatttttact gagacgactg agttcgactt
     2881 tgcaaaatta aataagcgga tccaagaatt ggccttccta aatcgtggtt taaatctctc
     2941 tattacggac aaacgtgagg gagtagagca aacaaaggaa tatcactatg aaggtggtat
     3001 tgcttcctac gttgagtatc ttaatgagaa caaggatgtc atttttgaga cccctatcta
     3061 tacagaaggt gaaatggatg atattaccgt tgaggttgcc atgcaatata cgacgagtta
     3121 tcatgaaaac gtagttagtt ttgccaacaa tattcacaca catgaaggtg gtacccatga
     3181 gcaaggattc cgtacagctc tgacacgtgt tatcaacgac tacgccaaga aaaataaaat
     3241 tctcaaagaa aatgaggata atttgactgg tgaagatgtg cgtgaaggct tgacagcggt
     3301 catttctgtt aagcacccag gtcctcaatt tgagggacaa actaagacaa aacttgggaa
     3361 tagtgaagtg gtcaaaatta ccaaccgcct tttctctgat gcctttgcag aatttctttt
     3421 ggaaaatcca cagattgcta gacggattgt tgaaaaaggg attttggcaa gcaaggcgcg
     3481 tattgctgct aagcgtgcgc gtgaggtaac tcgtaagaaa tcgggtcttg aaatctcaaa
     3541 cctcccaggt aagttagcag actgttcctc aaatgatgca acgaaaacag agcttttcat
     3601 cgttgagggg gactcagccg gtggttcagc taaatccggt cgcgaccgtg aatttcaggc
     3661 tattttaccg attcgtggta agattttgaa cgtagaaaaa gccagcatgg acaagatttt
     3721 ggccaacgaa gaaatccgta gtctatttac agctatggga actggctttg gtgcggattt
     3781 cgacgttagc aaggcacgtt atcaaaaatt agtcattatg acagatgccg atgtcgatgg
     3841 tgcccatatt cggacactcc ttctgacatt attttaccgc tacatgcgtc ctgttgtaga
     3901 agcgggatac gtatatatcg ctcaaccacc tatttacggt atcaaggttg gaagtgagat
     3961 aaaagaatat attcaacctg gggttaatca agagcaagaa ttgcaagatg ccttagaaag
     4021 acatagtacg ggacggtcca agccaacgat ccaacgttac aaaggtttgg gagaaatgga
     4081 tgatcatcag ttgtgggaaa ctacgatgaa tcctgaaaat cgtctcatgg cacgcgtttc
     4141 agttgatgat gcggcagaag ccgataagat ttttgacatg ttaatggggg ataaggttga
     4201 acctcgtcga gagtttatcg aggaaaatgc tgtttattca acattggatg tctaaaaact
     4261 aaaaaaacaa gtgcatatac tagagattta tggtataatt aagcgatatt ttctagtaat
     4321 tactatgagc taaggagatt tacatgccta caggaacaat catcttaatc gtttcgattg
     4381 ttattatttt aatcattgcc tatgtagctt gcctgattgt tcgtaaacga aatgacaacc
     4441 ttttggttgc attggaagaa cgtaaggaag agctatttaa ccttccagtt aatgaagaag
     4501 tcgaagctgt caaagcactt catttgattg gtcaaagtca ggtgtcattc cgtgaatgga
     4561 atcaaaaatg ggttgatttg tcgctcaatt catttgccga cattgaaaat catatctttg
     4621 aggcagaagg ctataacaat gcctttcgct ttgtgagtgc aaagaacgct atcgacagta
     4681 tcgaaagcca aattgattta attgaagaag acatcgcctc tatccgtcat ggtttgatgg
     4741 agttgaagga gcaagaagag aaaaactctg gtcgcgtaaa acatgcgtta aacttgttcg
     4801 atagtttaca ggaagctgtt cgtgaaaatc cagatagcta cggtgagaca ctaccagaac
     4861 ttgagaaaca attgaaaaat attgaagttg agttttctga atttgtgatg ctcaattcct
     4921 ctggtgaccc gattgaagct tctgaaatcc ttgataagac tgaagagcat atgattgccc
     4981 tcaatcaaat catggatcgc attccaagtt tgattgaacg agttacaaaa gatttcccag
     5041 agcaattgga agatttggag tcgggttatc gtaaactggt tgagcagaat tatttgttca
     5101 cagaagctaa catcgagtca cagttccaaa atattcgcgt ttcaattcgt gaaaatactg
     5161 ctttgattgt ttcctttgat ttggatgccg cagaagctga aaatgaggga attcaagcaa
     5221 aaattgatca tttgtataaa gtcttcaatc gtgagatcga agcgaataag gaagctgtta
     5281 agattagtaa aaacttgcca aaattcttgg agcatgttgt ccaaaataca cagctcttgg
     5341 atgaggaaag ccaacgccta aatgcaactt acttgctggc agatagcaaa ctttcacgga
     5401 tcaatcagct taaagctcgt ttggaatcga ttgaaattgt tgttacagaa agtgtggaag
     5461 acattgaaaa tccacaagtt gcatattcta ttttggaaga gcgtttggac cattcattgg
     5521 caagcttgaa agaaatcgaa gaggagcagc ttgttttagc tgactatctt aaatcacaag
     5581 aattgtcaga gaacacagcg cgtaagaaag ctacacttta tatcaacaaa ttgcataccc
     5641 ttaagcgtta tatggaaaaa cgcaaccttc caggaattcc agctgaattt ttaacaaact
     5701 tctttagaac gagcgatcat gtggaagcct tgattgccga gttagactat aaacgaatca
     5761 atatcgaagt tgttaatcgt ttgttggaaa atgcaacgta tgatatgaat caattggaag
     5821 agttggcgta tttgattgtg caaaatgcga ctttaacaga gcagttgcta caatactcta
     5881 accgttatcg ttcattcgat gaaagtgtgc aaaaagcatt taaccgttca ttatcaattt
     5941 ttgaaaagga ttttgattac caagcagcat ttgaagaaat ttcatttgct ctggaaacag
     6001 ttgaacctgg tgtaacagag cgttttgtac gttcatacga aaaaactcgc gaagccattc
     6061 gctactagat aaaaagccat ttggcttttt atttttatac tttgaaagga atattggaga
     6121 tgacaactgg attattagtt atggatgttg attcaacatt aattttggaa gaaggaatag
     6181 atttacttgg agaagaggcc ggtttaggag cgcaagttgc agcaattacc gaacgtgcta
     6241 tgcgtgggga attggatttt gaagaagcct tacgtgaacg tgtggcgttg ttaaagggac
     6301 tgcctgtttc tgtgtttgat cgaattatca aaaaaatcca ctttacgcct ggagcagcag
     6361 aattggtctc agaattaaaa atgcgaggct ataaggtagc agtagtttca ggcgggtttc
     6421 atgaaacagt cgatcgacta gctgcacagt tagagttaga ctatgttcgg gctaatcgat
     6481 tagaagtagt ggatggagta ttgacgggac aagtattggg tgaaattgta acgaaagata
     6541 ctaaaaaagc atgtttagaa gaatgggcgg cagaaaatgg gctgagtcta tctcaaacga
     6601 ttgccatggg ggatggagca aatgatctac caatgattca acgagcagga attggagtag
     6661 ctttctgtgc taaaccgatt gtccaagaac aggcgcccta ccaaataaat gaaaaaaatc
     6721 tctataaact aatagagatt ttagatagta aataacgaga agtcagctga gtgctgactt
     6781 ttcttctatt ctgttgtcag taaaaccctt ttcaaatctt ggacggtttc gactatcatg
     6841 gtagccccag ccttttcaaa ttcctgcttg ttcccatagc cgtaaagaac accgatggcg
     6901 ggaagttggt gcatgcgtgc tccttcaatg tcatgttccc tatctccaat catcacagca
     6961 tgttttggaa atgcttctaa ttgatttata gcatagccga tgacgtccgc cttactgatg
     7021 cgactactat ccagactagc accggcaatg atatcaaagt agtgagcgat accaaaatgt
     7081 tctagaatct gtttggcaaa tatttctggc tttgaggtag caattactag tgtttttcca
     7141 gcagttctca attcttcaag cagagggatg attccaggat agagttgatt ttcaaacatt
     7201 cctttttctt taaaatagac acggaaagta tcaactgcac tttgtgtatc ttcagggttg
     7261 agttggtaga atcgtgaaaa agattcatag agtggcgggc cgatgaatcg gtttaaattg
     7321 gctgtatctg gttcttcgat tcccattttt tctagtgcgt aggcgacgga gtttaagatt
     7381 ccttgtccag aatcagtaag tgttccatct aagtcaaata atatagtttg atacatactt
     7441 atctcctttc tttcagtata acacagacga tgaaaaacag aaaagattta ttgaaagctg
     7501 aataggagcg tgatatacta ataatataaa ggaggctagt accatgcata ttctcattgc
     7561 tccggattca tttaaagagt ctctttcagc tacaaaggtt gctgaagcga ttaaaaaagg
     7621 attttctaag gtttacccac aagcagggta tgacttaatt cccctaggag atggtggcga
     7681 agggacagtt gagagtctaa tgcaggcctt atccttggat gggacccaga cttgggtgac
     7741 aggtccattt ggagataaaa ttaaggtttc ctatgcggtt aaagatgatc ttgcggtttt
     7801 tgaaatggct gagattgtag ggctggcaag catcccgcat gaaagaagga gtcctctctt
     7861 tattaagaca caaggggttg gggagctgat tgtggagctc gttcaaaatg gtgtcaaacg
     7921 catatttata ggagtaggtg gctctgccag tcatgatggt ggtatcggaa tggcggcagg
     7981 tttaggagtg aaattttata atcgagaggg aaaagaagta gaggcaattg gagctcatat
     8041 cggggagatt gtcagctttt ccacagagga tatgttggta gatctatctc aggtcaggat
     8101 tgatttggta acggatgtgg agaatccgct ttgcggacca gcgggtgcca catttgtttt
     8161 tgcaggtcag aaaggtcttg cccctgctga atttgaacta gtagacaaga aaatggagtc
     8221 cttttataaa ttagttaatc caatgctact cgatttggca ggagcgggtg ctggaggagg
     8281 tatggcagca ggtttagtcc aatttgctgg tgctcgcatt caaaaaggca tcgactttgt
     8341 cttggatcag ttggactttg ctcatcgcgt caccaaagcg gatctggttg tggtcggaga
     8401 agggcggatg gatgcccaaa gcttatcagg gaagactccg ataggagtag ctagacggac
     8461 gccgacgggg attcccatca ttgcaatttg tggtagcctc aaagacgatc ttcccgagtt
     8521 tccttttgaa aatatctgtg ccgcttttcc gataattgca agcgttgaaa gtttggagga
     8581 cacgcttcaa aaagcagaaa aaaacctggt ccgcacggca gagcaggtgg caagaattct
     8641 tcagttagga ggtcaacaaa gatggaatta gtgaaagatg tggctattat cttatttatt
     8701 tttatttgtc ttgcaaagct agtatccgtt atgagacttt ccgaaaaaga aagaggaatg
     8761 gaaatgaatg taataaaggc aaatggagca atgttctttt tcaatgaaaa aaatgaaaga
     8821 ggcagattgc taggaatcct ttgtctaacc tgtattattt ttagtttaat atttatactg
     8881 ctttattgat aaataagtct aaccaaataa ttttttccag aaggaaggtt ttgcatcttc
     8941 ctttttttct tctggttttg agataagatt tggaaatatg gattctaagc taacttcttc
     9001 attatccaca gcgtgatttg tgtgaaagac aagtgcgtag ggagactgtc ctattttttc
     9061 atcgatgata gcggtagtaa taccgaagtt ctgagcaatt tttagtagtg aaatttgttg
     9121 cttgtcagac agggctggcg agagtttgag gaatagagga gagtatctgt ttgctagttt
     9181 ttgacaaatc gtatcgaact tatttccgac gacttcacta ctcaaatcgt caaaggaaac
     9241 gatcaggaca acccgttcgc gataggttcc catgtataga cgttgttcat ctggattcaa
     9301 tcgtgtttcg ccagaggctt tctgtagtat ggtagtattt aaatcgttca tggtttcagt
     9361 ataacatact cagttaactt tgaaaaggaa ggcgtttaca ttatttcttt cagtaaaata
     9421 acctgttttt tcttgaaaaa tcccttcttt tagggtatga tagctatgta acaattttaa
     9481 actcaaagga gagtaatata atgtcaatta ttactgatgt ttacgctcgc gaagtccttg
     9541 actcacgcgg taaccctaca cttgaagttg aagtttatac tgaatcaggt gctttcggac
     9601 gtggtatggt tccttcagga gcttctactg gtgagcacga agcagttgag cttcgcgacg
     9661 gtgacaaatc tcgttacctt ggtcttggta ctcaaaaagc tgttgacaac gtgaacaacg
     9721 tgattgctga cgctatcatc ggttttgacg ttcgtgatca acaagctatc gaccgcgcta
     9781 tgatcgctct tgacggtact cctaacaaag gtaaattggg tgcaaacgca atcctcggtg
     9841 tttctatcgc tgttgcgcgt gctgctgctg actaccttga agtgccactt tacacttacc
     9901 ttggtggatt caacactaaa gtattgccaa ctccaatgat gaacatcatc aacggtggtt
     9961 ctcactcaga cgctccaatc gctttccaag aattcatgat cttgccagtt ggcgctcctt
    10021 cattcaaaga aggtcttcgt tggggtgctg aagtattcca cgctttgaag aaaatcttga
    10081 aagctcgtgg tttggtaaca gctgttggtg acgaaggtgg tttcgctcct aagttcgaag
    10141 gaactgaaga cggtgttgaa acaatcatcg aagctatcga agctgctggt tacgaagctg
    10201 gcgaaaacgg catcatgatc ggtttcgact gtgcgtcatc tgaattctac gataaagagc
    10261 gtaaagttta cgactacact aaattcgaag gtgaaggcgc tgctgttcgt acttctgcag
    10321 aacaaatcga ctaccttgaa gaattggtta acaaataccc aatcatcact atcgaagatg
    10381 gtatggatga aaacgactgg gatggctgga aagctcttac tgagcgtctt ggcaaacgcg
    10441 ttcaattggt tggtgacgac ttcttcgtaa caaacactga ctaccttgca cgtggtatca
    10501 aagaaggtgc tgctaactca atccttatca aagttaacca aatcggtact cttactgaaa
    10561 catttgaagc tatcgaaatg gctaaagaag ctggctacac tgccgttgta tcacaccgtt
    10621 caggtgaaac tgaagattca acaatcgctg acatcgcagt tgcaactaac gcaggccaaa
    10681 tcaagactgg ttcattgtca cgtacagacc gtatcgctaa atacaaccaa ttgcttcgta
    10741 tcgaagatca acttggtgaa gttgcagtct acaaaggctt gaactcattc tacaacttga
    10801 aaaaataaaa cagtctggga gactgtttta tccctgagct agcatagcga gggttatagt
    10861 aagaacaagt ctggaaattt ccagacttgt ttttcgtagt acagtgtact aatttatccc
    10921 cgagctagta tagtgaggga tatagtaaga acaagtctga aaatattcgg acttgttctt
    10981 tgactttata tgatttaagg gctgtaaagc cttgatataa ggcactttgg ggcatcatcc
    11041 caaggtactt ttttgataga ttgacagata ctttaaaaat gtgttacaat gtaacacaaa
    11101 gaagcgaggt gaatatcatg agtacagtga caatcagatt aaatcaagaa gaagaagtat
    11161 tctttaaaag ctatgcacaa ttaacaggtc aaagtctttc tagccttttt aagaaagctt
    11221 tggagcgtga tattgaagat gagtatgatt taaaaatcta tcatcaagct tatgatgagt
    11281 acaaagcaga tccagaaaca attagtcatg ctgattttaa gaaagagcta ggattatagc
    11341 atgtatcatt tagagtattc taaaaaggct caaaagcaaa ttaagaaatt agataggcaa
    11401 attcagaggt tgttgtttgc ttggattgat aaacacttag aagggactga taatccacgc
    11461 gccaatggta aaggtttgac aggcaatcat gctaacgagt ggcgttatcg tatcggagat
    11521 taccgactga tttgcgatat tcaagatgat aagttggtta ttttagcact tgagtttgga
    11581 catcgtaaag atgtctattg atgcgtgaaa atctatgaca agataggtcc taactatttt
    11641 taagaatgaa tagaaaacta gactgaaatt cctagggaat tttctttgcc ttgatattga
    11701 taaaatgata ttctaaaaag gcagatcaac ttaagtattc tcattttgag aagagatgga
    11761 gagtgggatg atagagtgga tattttttga tttgggttcg acgcttttag atgaagaggc
    11821 tgcttatggt tattatatag acaagtgtgt gaagaagtta gagtctctgg atatagaggt
    11881 ttcatcagat tcttataaaa agaaaatggt ggagtatgct cataagtcgc tagatccaat
    11941 tcgtgcgacc tggcactatt ttgcaccgac cgagccacgt cctttatgga caaatgaggg
    12001 tgtgagcctg tatcctgaaa caatagatgc tctagagaag ttatcacaaa actatcgatt
    12061 ggggattatt gccaatcagt ctagtagtat tagagaactg cttaaagagt ggggaattga
    12121 gtcttatttt caactcatca tcctctctga agaggttggt ttatctaaac caaatacagc
    12181 tattttcaca cttgccttgc aaaaaacaaa catccctgca gatagagttg tctatgtcgg
    12241 ggataggtat gataatgata ttctgcctgc taaatctttg ggaatgtgga ctgtacggat
    12301 actgacaggt tttgggaagc atgccagtga aaatgaaaaa ttgaagagcg attgggtaat
    12361 tccttcattg caagagataa caaatatttt tgaacaaaca aaaaactaga ctgaatattc
    12421 tcagcctagt ttttacatgt attagaacaa gcctttaact ttatctaaaa gaccgttaac
    12481 accttcagaa cctgataaca agccttttgc ctgttccaag tattcaccga attggtcctt
    12541 gttttcttcg ataaattgtt ttgcaccatc aaagtctttg tttgcaatca attcttttac
    12601 ttggttaaaa agatctactg gattcatgtt gaaatcacct cctatgagac tattaaacca
    12661 aaactgtacg gatttcacaa ttgaaacgac ttataaaaat gtaacgcaaa ctgcttcagg
    12721 aacatagaaa tcgtgtgaaa gctcagtcaa acagccattt tcggcatctc tttcgaatac
    12781 agttgcattg tcagaatctt gatggacaac aatcaaatgc ttttcatcag gactaagcgt
    12841 gaaatcgcga ggagtttttc catttgttgg gacgatttca actaattcta agctggcatc
    12901 agcaagtgtt ttgtagactg cgatagagtc gtttccgcgg ttggatccat aaataaattt
    12961 accatccttt gtgatgcgaa tagcggcagt accgttgaaa ccagtatggt cttctgggag
    13021 agtagagaca gtttgtaggt gttcaaattg tccccagccg tcatagataa gcacctcaat
    13081 agttgaattg agttcacaga tgagataggc gatttttgcg acaggatgga agacaatgtg
    13141 acgtggacca cttcctggcg cagcctgata ggttgctatt ttctctactt ttccttggtc
    13201 agatacctta taggttacca cttgatcaca tcctaaatca caggttacta aaaatttatc
    13261 gggcgtcaaa tcagaaaagt gaacgtgggc ggaagcttgg ttttcgtgcg gcccagatcc
    13321 ttcgtgttga gcgacatcag ctaattctag cgaaccatcc gccaaacgtt tataaacaag
    13381 tagttgccct ttgtggaaat tggaaccata aactaaatct cttgcttcat ctacagcgac
    13441 atagcaaagt ggtgcgccct ctgatacaac atggttgagt agagtatact cagcattaaa
    13501 ggcagcgata cctcctagac cattttcagc gccgacggag tatagatgtc cggccttatc
    13561 aaaggcaagg taggtagggt taggttcttc agtgaccaat tctagattgc taagttgtcc
    13621 tgtttcagag tcaaaatttg ctttataaat tccttttgat tcacgttttg tataggtacc
    13681 gaaatagata gccataggat tctccttttt ggaaatgatt gataaaatta taccatgttt
    13741 ttctgagaaa gtcgtataaa ttctgtagtt gatttttaca aaaatccttt ctccatgtta
    13801 caatagaaaa aaagactagg agtgtattag atggaggata agcatcaaaa atttagtctg
    13861 acttggtttt tccgcttgtt tttaaatagc caagcggtga catttttatt ggtaaccttg
    13921 ctgacttttt tgaccatatt tatttttagt aaaattagtt ttttattcag accaatagga
    13981 agctttttag aaattgtatt gttaccgatg attttaacag gtcttttgta ttacctatta
    14041 aatccgatgg ttgactggat ggaaaagcat aaaatttctc gtacagttgg tatttccatt
    14101 ctctttgttt taatcagtct tctcattatc tggggactgg cggtggcaat tccgagtatt
    14161 caagagcaag tgacatcttt tgcgcaaaat cttccttcaa atatccagaa aatcgaagga
    14221 caggtaactg ggctcctaca ggatcagcgc tttgaacaat ttagaccaac agctctggag
    14281 atgttaaata aggtcaatga tcagattgtt gcctatgctc agaagttttc ttcaagcgct
    14341 gtgaactggg caagtaattt gatttcaacc gcttcacaga ttattgttgc tattttgatt
    14401 atgcccttta ttctctttta tctgttacgg gatggtcagt atttgaataa acacattacc
    14461 caatatctac caaccaagtg gagagaaccg attggaacag tactatcaga tgtgaatggg
    14521 caattatcaa actatgttcg tggtcaggtg accgttgcga ttattgttgc cctgatgttc
    14581 tcagtgatgt tctcaatcat tggtcttagc tatccaataa ctttgggggt gatggctggt
    14641 ttcctcaatc taattccgta tttgggttct ttcttggcca tgattccagc tgttatttta
    14701 ggattgattg ctggtccaat catgctgata aaggttttgg tagtctttat gattgagcag
    14761 actatagaag gtcgttttgt gacaccattg attatcggaa gctccctaag tattcatccg
    14821 attaccattt tatttgtatt attgacagct ggtcagatgt acggtgtcct aggagttctt
    14881 ctgggaattc caatatatgc ctctattaag gttttagtga aagcggcatt tgaatggtac
    14941 aaggcacaca gtagtttgta tgaagatgaa gaaaatgagg ttgtgaatga acaatagtga
    15001 aaaaatgttg gtttgtttgg accaacagga tttagacaag gcagataagt atttcaagcg
    15061 cgccttggtg caagatgata gcgaaacgct tttgtccttg gcagcctact tagaaggcat
    15121 tggttttttc ccacaggcta gacaaatcta tgaacaggtc aaagaagaat ttcccgaagt
    15181 actgatcaat cttgcccaaa tagcatttga agatggcttg gttgaagaag ctttcagata
    15241 tttggaggaa atttcggaag acagttctat ctatgtggaa gccttgttgg tcaaggcgga
    15301 cctgtatcag gcagaaggct tgtcggatgt ggcgtgtgaa aaattgttag aagcaagtta
    15361 cttatcagat gaacccatca tcctctttgg cttagcagaa ttggatatgg aactggagct
    15421 ttttaatgag gctatttcct actatgccca gctggataat cgtgaaatct acgaattaat
    15481 gggagtttct acctatcagc gaattggtat tgcctatgca agtttgggga aatttgaagc
    15541 ggcgattgaa tttttggaaa aagctgttga gttggaatac gatgatcaga cggtctttga
    15601 attggctgct ctgctatttg aacgagaaga ataccaaaag gccaatctct atttcaagca
    15661 gttggatacc atcaatcctg attttgaggg ctatgaatat gcctatgctc agtctcttca
    15721 tgccgagcat aagattgatg atgccttggt tatgactcaa aaaggcctgg ctaaaaatga
    15781 ctttgatgcc aatctcttgc ttcaggcttc acagtatgcc tatgaattgc acgacgaggc
    15841 gggggcagaa gattatcttc tacgggcaaa agaagtggca gatgatagta acgaactagc
    15901 tctgcgcttg tccaatttgt atcttgagca ggaacgattt gaagaggttg tggctttatt
    15961 tgatgaagag gtagataacg ttctagctcg ctggaataag gccaaagcct atcaagctct
    16021 agaaagagat gatgaagcta ttgcgcttta cgatgaattg gctggagaat tggctgagaa
    16081 tcctgaattt ttggctgatt acgtagcggt tttacgtcaa cttggtcgtt tggatgaggc
    16141 aaaagagcaa gctagtcgtt atatccaatt ggtaccagac gatttagcca tgcaagaatt
    16201 tttgaatgaa gagtaggtta tgcaagtaaa tcgattattt caatacaata ccttaggtgc
    16261 cttaatggct ggactgtatg gcggctcctt gacagttggc gaattgttgg aacatggtga
    16321 tttgggtttg ggaaccctgg attccattga tggcgagctg attgtcttgg atggaaaggc
    16381 ttatcaggcc aagggtgcag gggagaaacc agaagtggtt gaagttccag ctgatatgaa
    16441 agttccctat gcggcggtta ttttccatga agcagaagtc attttcaaac aacgctttga
    16501 aatgactagc gatgaattgc accagcggat tgagtcatac tatgacgggg aaaatctttt
    16561 tcgctccatc aaaatcaaag ggacgttttc gcatatgcac gtgcgcatga ttccaaaatc
    16621 ggcttttgat gttcgttttg cggaggtggc aagtcgccag cctgagtata ccgctgagaa
    16681 tatttcaggt accattgttg gtatttggac accagaaatt tttcacgggg tcagtgtggc
    16741 tggctatcat ttgcatttta tttcggatga tttgacattt ggcgggcatg tcatggacta
    16801 tgtgatttca gaaggaatgg ttgaagtggg accagtcgat caactagacc aacgttttcc
    16861 tgttcaagac cgccagtatc tttttgctaa gttcaacgct aaggaagtta gagaagatat
    16921 tgataaggcg gagtaggttt caatacagaa aaatccatga attagatttt catggatttt
    16981 attttatctt cagttggggt gacacggagg gttttctgac ctcggtaggt cacaaagcct
    17041 ggtttgccac ctgttggctt atggagtttt ttggcttcaa tcatatcgac ttggaccaaa
    17101 ttggaatgtc tggccttaga gaagtaggct gctaattcag ctgcgtctgt cttgacctcg
    17161 tcacttgggt ccaagttgtc tgtgatgacc acatgactac ctggaatgtc tttggtatgg
    17221 aaccagagtt cgcctttctt ggccattttg aaggtcaact catcattttg caggttattt
    17281 ttcccgacca gaataatagt cttcccgtcc gtcgccaagt atcgctcagg tttctgacgc
    17341 ttatggattt tctcacggtg gcggcgtttg aggtagcctg tttcaatcaa ttcctcacgg
    17401 atttcatcga tttctgccag actagcctgt cccagcatgg tgtcaacgga ctccagatag
    17461 acaatggttg ccttggtctc ctcaatcaag ttggtcaggt gcttgaccgc ctccttgagt
    17521 ttctggtact ttttgaaata acgttgggca ttctggctag gagtaagagc cacgtccaac
    17581 tcaatctcca gttcctggcc cgtatagtag ttgtctaagg tcacactagc ctggtcattt
    17641 ggtacttgat gcagataggt ggtcaagagc tcgccctttt gtcgcaccaa ctccgccgtc
    17701 tccgtatccg ccaattcctg ctcctgcttg accagtttct tgcgattttt ctccaactca
    17761 ctggctaccc gcttgatcag ctcattggcc tgctgggcca cccgatcccg ctccgccttg
    17821 tcctgatagt agaagtccag cagactgctc aggctctcaa agtgtggctg gttttcaggg
    17881 ctattggcaa atggcagagc agcataggat ttagctgtca ggctaggctg agttgcctgg
    17941 tcaaaaaagg cacggaagtt cttgaggcgg tccgtctgta agtgactggc cagttcagaa
    18001 gctgtatccc gccccaaacc ttgaaagacc tgttggagat tttttggact cagttcctga
    18061 gtcgataaga tttcaaacaa tttctcatca gacaccgtat aaggattgag agaatgtgtc
    18121 tccggtggac gaatataggt ggagcctggc aagatagttc ggtaggagtt ttgcgagaaa
    18181 ccaacgtgct tgatagcctc aataatcttc tgttcagact tatctaccaa gatgatattg
    18241 ctgtgcttgc ccatgatttc cacaatcaag gttgcttggg tatggtcgcc aatctcgtcc
    18301 ttgttggaca ccgaaaattc taagatgcgg tcattgtcca actgacgaat ctcctcgata
    18361 atggctccct gcaagtattt ccgcagaatc atggtaaagg tattgggcac tttgggattg
    18421 gtaaagtccg actgggtcag ctgaacccga ccgaaaaccg aatgggcgga caagagcaat
    18481 ttatggctct gacggttgct acggatattg aggataatct cctgttcaaa gggctggttg
    18541 attttctgaa tccgcccacc ttctaaattg gcctttaact cagccgtcat gtgatgtaaa
    18601 aaaaatccgt caaaagacat ggttttcctc tttctaatag ctataactca gtctagtata
    18661 tcataaatca gtgacttttt aacgaaggg
//
LOCUS       DASGCC010000030        18229 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.030, whole genome shotgun sequence.
ACCESSION   DASGCC010000030 DASGCC010000000
VERSION     DASGCC010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18229
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.030"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(288..1310)
                     /locus_tag="U1404_000705"
     CDS             complement(288..1310)
                     /locus_tag="U1404_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HEM5347678.1"
                     /translation="MVKENAKGVGLCFLLALVGQWLGHLFPLVGGPVFALLIGMSLYP
                     YFSSKNAFQSGLTFTSKKILQYAVICLGFGLNLSAVLAVGRQSLPIIFSTISFALILA
                     FLMWKILPISSHLATLIGVGTSICGGSAIAATAPIIQADDEDVAQAISVIFLFNVLAA
                     LVFPTLATWLGFSTDSGQVFGMFAGTAVNDTSSVTAAASTWDSLYGLGSQTLDTAVTV
                     KLTRTLAIIPITTVLAIWQTRGKGVQADKKSLLAGFPVFILYFILASLITTIAGGFGI
                     GADWFAPLKSLSKVFICMAMVAIGLRTNVFALVKNGRAALLVGLVCWFGVTALTLVWQ
                     AILGIW"
     gene            complement(1320..1643)
                     /locus_tag="U1404_000706"
     CDS             complement(1320..1643)
                     /locus_tag="U1404_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEM5347679.1"
                     /translation="MIKTNILLIILMAALVTWVPRVLPFVLTQNKSLPPKLVKFLSFL
                     PITIIFALTLSSIMDEKVGSLPSFLPVESLAILPTFFVVLKTKNILLAVLVGVVTTAL
                     LRLIF"
     gene            complement(1630..2331)
                     /locus_tag="U1404_000707"
     CDS             complement(1630..2331)
                     /locus_tag="U1404_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEM5347680.1"
                     /translation="MKKYAFREGMRDAIPTVLGYASIGLACGVVSVNSGISTVEMGLM
                     SLLIYAGSAQFVMCAMIFAGAPLLSIAVTVFFVNLRNFLMCLHATTIFQGNRLGSNIL
                     IGSFVTDESYAVLLRKQIEHHTITPEWMYGNNFASYASWVTFTTLGNLIGGLIPNPEQ
                     FGLDFALVAMFVGIFAGQLEAMVRTIPLKKIGLILLAVGLTYIGLSMMVSSYVAVLLA
                     TLLGCFVGVMIDDKN"
     gene            complement(2606..4807)
                     /locus_tag="U1404_000708"
     CDS             complement(2606..4807)
                     /locus_tag="U1404_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM5347681.1"
                     /translation="MGIIFHEKTKEFHLYNEFISYVLTVLPNGHIGSLYYGKRVTETA
                     SYQYVREDEYRALTSFVEDDDRFFSLQYANPEFACYGTTDYFSPTFELVQKDGSSLSH
                     FVYQGHVIYAGRSALKGLPHLYLDEEGQADSLDIYLLDEESQTRLVLSYTIFRDYPAV
                     TRSARFEQLGEQSVCLNRALSMTLCLPDMDYDWLHLDGAWGRERHLQLSPLHQGCQSI
                     YSLKGASSAEHNPFMALKRPTADEQQGEVLGFSLVYSGNFLAQVDVSSFQKTRVSMGI
                     HPERFSWTLDKGEEFQTPEVVMVYSEHGLNGMSQTYHRLFQKHLVRGYWRDRERPVLL
                     NNWEAMSFDFDEETILSLAKEAAGLGVELFVMDDGWFGKRNHDRAGLGDWTVNREKLP
                     SGLTGIIDQVHAMGMKFGLWIEPEMVNKDSDLYRAHPDWIFHHPQHSQSHGRHQYTLD
                     LSREDVYQNIHDQLHRLLAEHDIDYIKWDMNRYMTEVFTCTREAERQGETFHRYILNL
                     YRLYDSLIAAFPTVLFESCSSGGARFDPGMLYYAPQTWVSDDTDAMERLKIQYGTSMV
                     YPLNSTGCHVSASPNQQLGRATPLSTRANVAFFGSFGYELDLFECSQEELEEMKEQIA
                     FYKAHRKLFQQGIFTRLKSPFDGEITAWQVQSLDGQQVIVGYYRRLTTANLSYQRLYL
                     QGLEEEAVYHLDGEVYTGSQLMHTGLSIRHGDHVGDNKDFTSYLMVLQKQQ"
     gene            complement(4817..5647)
                     /locus_tag="U1404_000709"
     CDS             complement(4817..5647)
                     /locus_tag="U1404_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5347682.1"
                     /translation="MKQSAFKSTIWMHAFLILVAMGMLIPFVWMVLTSFKTVTESTQM
                     NPFHFLPSNWMVSNYTEAIRTNNFPILYLNTILMMLYRIFSSVMFSAMAAYAFARLEF
                     PGRNFLFGLVLFQMMVPPQLFVIPQYLMIDQLGMRNTIFALVFPGIVSAFGTFLLRQF
                     FMGLPKELEESAKLDGCNIGQTFFKVMLPLAKSGLIALAIFTALFAFKDLLWPLIINS
                     EADKATLSSALSKIQGAYAVNYPQLMAASVLAIWPMLVLYVVFQKQFIQGIATSGGKL
                     "
     gene            complement(5658..6551)
                     /locus_tag="U1404_000710"
     CDS             complement(5658..6551)
                     /locus_tag="U1404_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5347683.1"
                     /translation="MFRKKGSLNEAIWGWGMVAPTIIGLIVLNIIPIFQTMKMSFHKS
                     GDFGKGDIFVGLANYQRMLGDAQVWQATWNTLKYTILVVPATVALAMLLAVLLNSKIK
                     GKHIYRTIFFLPMVAAPAAVTMVWKWLYNTDFGLINYILRRLGLGAVNWIEDPKIALY
                     SIALIGIWSTVGYSMILILAGLQEIPTDFYEAARIDGASPAKQFFSITLPLVSPTLFF
                     VVVTSVIQSMQVFDVIYMMEDVRSPAYDKTVSLVYLFYNNSFKYSDKGYGSTIVMLLL
                     LIILVITFVQMKVQKKWVHYR"
     gene            complement(6620..7894)
                     /locus_tag="U1404_000711"
     CDS             complement(6620..7894)
                     /locus_tag="U1404_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM5347684.1"
                     /translation="MKKIGRYVTLLAAAGLLAACSTSTESSKTTEGSSSGKTEISYAI
                     WDSGQEPGLRKIADEFEKKNPDIKINIQVSDWDSYWTMLEAGATGGSLPDTFWMHSNE
                     IYRYGSNEMLLPLDEYLAKSEDAKLANFPDGLNEIYNINGKQYAIPKDFDTIGLWYNK
                     KLFDEAGIPYPDDTWDWNKLKEVAKKLTKPDGSQYGFGAGLSNQEGYYNFIYQNGGKV
                     ITDDLKSGYADPKTIEALDYYFSFVKEKISPAITVDKERAEAFQNGQVAMSVFGSWNL
                     SGFTANDYIRENADVAVLPKGPDGTRATIFNGLGHAIAATTKHPDAAWKWVEYLSSKE
                     AQEMQATLGVAISAYKGAADTWVDSNKNFTIKNYVDMVDYAQIRPYSQTTIKWEDKAY
                     ELLKPAYLGEKATEEAAKETADMMNAELATEK"
     gene            8109..8945
                     /locus_tag="U1404_000712"
     CDS             8109..8945
                     /locus_tag="U1404_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5347685.1"
                     /translation="MKIQPEFYVFNNRSYVDFYPIQFGMEACKPLHSFGPTMKQHYLF
                     HYIISGSGTFYDTSDQREYHLTAGQGFLISPDAICSYEADEKDPWTYIWLEFDGLKTE
                     HFLRQAGLSKEQPIFSQREMPTSSPVYHEMKQILALHHQKSALVLGHLYLFISCLIDC
                     SLTKTSSKHDENKEFYIREAINFVERNYEKAISVDDLAQVCNLNRHYFSRLFKEQMNI
                     SPQQFIIQYRLSEACELLKNTTKTLQEIAEEIGYSNQFNFSTAFKRHYQISPNRWRKI
                     HK"
     gene            complement(8982..9989)
                     /gene="tsaD"
                     /locus_tag="U1404_000713"
     CDS             complement(8982..9989)
                     /gene="tsaD"
                     /locus_tag="U1404_000713"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEM5347686.1"
                     /translation="MKDRLILAIETSCDETSVAVLRNDAELLSNVIASQIASHQRFGG
                     VVPEVASRHHVEVITACIEEALLEAEVTAEDLTAVAVTYGPGLVGALLVGISAAKAFA
                     WANGLPLIPVNHMAGHLMAARAVKELEFPLLALLVSGGHTELVYVSEAGDYKIVGETR
                     DDAVGEAYDKVGRVMGLPYPAGRVIDELAHEGQDIYDFPRAMIKEDNLEFSFSGLKSA
                     FINLYHNAQQKGETLSNADLSASFQACVMDILMAKTKKALEQYPVKTLVVAGGVAANQ
                     GLRERLAAEITDVEVIIPPLRLCGDNAGMIALAAVSEYNKENLAGWDLNAKPSLAFEN
                     L"
     gene            complement(9979..10419)
                     /gene="rimI"
                     /locus_tag="U1404_000714"
     CDS             complement(9979..10419)
                     /gene="rimI"
                     /locus_tag="U1404_000714"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEM5347687.1"
                     /translation="MIEIKYYDGQENLSEAVLAVMESVYEQSPWTLEQIVTSLASQDE
                     DYYLAYEGQELVGFLAVQTVLDEMEILQIAVKADFQRLGIASQLMAAVMDWEGDIFLE
                     VRESNSAAQALYTRQHFTKIGKRKDYYRHPVEDAVLMKRERDER"
     gene            complement(10416..11099)
                     /gene="tsaB"
                     /locus_tag="U1404_000715"
     CDS             complement(10416..11099)
                     /gene="tsaB"
                     /locus_tag="U1404_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEM5347688.1"
                     /translation="MKILALDSSNQALSVALVEDGRLQAETLLAVKKNHSISLMPVVD
                     FLVAQVGWTPKDLDRIVVAEGPGSYTGLRVAVATAKTLAYTLKIDLVGLSSLQSLVPP
                     SLTGLVVPLIDARRNCVYAGLYENGRAVEADKYWSFEDLLSSLSGKEDITFVGEVANF
                     IEQIEQALPTAQYQASLPSAYQLAVIGQDLPAVDVTSFEPNYLKRVEAEENWLKDNQA
                     GSESYIKRV"
     gene            11546..11776
                     /locus_tag="U1404_000716"
     CDS             11546..11776
                     /locus_tag="U1404_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000639444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HEM5347689.1"
                     /translation="MIYKVFYQESKISPRREQTRALYLDIDAASELEGRIIARELVET
                     NRPEYNIEFIDLLSDNHLEYEKEHADFKITEF"
     gene            11780..13459
                     /locus_tag="U1404_000717"
     CDS             11780..13459
                     /locus_tag="U1404_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM5347690.1"
                     /translation="MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKF
                     PEDDLLGIDYVIPDYSYIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLA
                     LALIRGKLEEHGLLRDATLHEINHNTELTFKHLKVSFFRTTHSIPEPLGIVVDTPQGK
                     IVCTGDFKFDFTPVGEPADLHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIM
                     KLIEGIHGRIIFASFASNIFRLQQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKV
                     PKDTFIEPNEIKEYPASEIMILCTGSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSS
                     PIPGNTTGVNKLINILIEAGVDVIHGKINNIHTSGHGGQQEQKLMLRLIKPKYFMPVH
                     GEYRMQKIHASLAVDTGVPKDNIFIMENGDVLALTKDSARLAGQFNAQDIYVDGNRIG
                     EIGAAVLKDRRDLSEDGVVLAVATVDFNSKMILAGPDILSRGFIYMRESGELIRESQR
                     VLFNAIRIAMRNKDANIQTVNGAIVNALRPFLYEKTEREPIIIPMILTPDR"
     gene            complement(13782..15128)
                     /gene="glnA"
                     /locus_tag="U1404_000718"
     CDS             complement(13782..15128)
                     /gene="glnA"
                     /locus_tag="U1404_000718"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009731741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEM5347691.1"
                     /translation="MVVTTADIKRDIKEKNVTFLRLMFTDIMGVMKNVEIPATEEQVE
                     KVLSNKVMFDGSSIEGFVRINESDMYLYPDLNTWTIFPWGDENGRVAGLICDIYTTEG
                     EPFAGDPRGNLKKSLRRMEKEGFSSFNLGPEPEFFLFKMDEQGNPTLEVNDKGGYFDL
                     APTDLADNTRREIVNVLTEMGFEVEASHHEVAVGQHEIDFKYADVLKACDNIQIFKLV
                     VKTIARKHGLYATFMAKPKFGIAGSGMHCNMSLFDKDGNNAFFDPEDPRGMQLSETAY
                     HFLGGLIKHAYNYTAITNPTVNSYKRLVPGFEAPVYIAWAGKNRSPLVRVPASRGMGT
                     RLELRSVDPTANPYLAMAVLLEVGLDGIEHKIEAPAPVESNIYAMSDEERREAGITDL
                     PSTLHNALKALRKDDVVRSALGDHIYTNFLEAKKIEWASYATYVSQWEIDNYLDMY"
     gene            complement(15155..15526)
                     /locus_tag="U1404_000719"
     CDS             complement(15155..15526)
                     /locus_tag="U1404_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5347692.1"
                     /translation="MREKEFRRSLAIFPIGSVMKLTDLTARQIRYYEDHGLIKPVRNE
                     GNRRLYSLNDMDLLLEIKDFLDEGLNIAAIKKEYANRKAKEKVQAEQKTLTDEDVRRI
                     LHDEFSRQGRFSSPSSIFRSS"
     gene            complement(15606..16118)
                     /locus_tag="U1404_000720"
     CDS             complement(15606..16118)
                     /locus_tag="U1404_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM5347693.1"
                     /translation="MLKRYKFDTQKFKLGMRTLKSGLAVFLVILLFHLLKWDGIQIAA
                     LSAVFSLREDFGKSVHFGSSRVLSNSIGGFYALLYFILSDLFSHNFWVTLIFIPIFTM
                     LTIMTNVSFNNAPGVISGVATMLIIALSVPAGDSIFYALQRVFETFVGVFVSVIVNYD
                     IDKIKKRFLS"
     gene            complement(16796..17995)
                     /locus_tag="U1404_000721"
     CDS             complement(16796..17995)
                     /locus_tag="U1404_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEM5347694.1"
                     /translation="MAKLTVKDVELKGKKVLVRVDFNVPLKDGVITNDNRITAALPTI
                     KYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQEVAFIAGATRGAELE
                     AAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRAH
                     ASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLE
                     KADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKALLEKANGKLILPVDSKEANA
                     FAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQA
                     GTIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPG
                     LAALTEK"
BASE COUNT         5537 a         4484 c         3372 g         4836 t
ORIGIN      
        1 cgcaagagaa ggctgttttc tcgtcattta gtttctcttt tattacttcg acgaatgagg
       61 aaactttgtt tccttatttc caacttcaaa cactccactg gagtgtttga actcgccttg
      121 cctgattgaa acagtctggg ggactgtttc aagtcaatgc ctagaaataa gaaagcattg
      181 agttatgtct gctgcttttg atgtgaacat cgttcacttt atccccagtc tccaactatc
      241 tcccagatag ttggagcgag tactaaaagt aaactaaaag actatattta ccagatcccc
      301 aaaattgctt gccaaaccag tgtcaacgct gttaccccaa accagcaaac tagtccgact
      361 aggagagccg ctctgccatt tttcaccaag gcaaacacat ttgtccgcaa accaatcgcc
      421 accatagcca tacaaatgaa aactttagag agggacttca gcggagcaaa ccaatctgcc
      481 cctataccaa atccacccgc tatcgttgtg attagactag ctaagataaa atacaagata
      541 aagaccggaa aacctgccaa gagggacttc ttgtctgctt gaactccctt ccctcgggtt
      601 tgccaaattg ctaagaccgt tgtaatcggg ataatagcta aagttcgtgt taacttaacc
      661 gtcactgctg tatctaaggt ctgactacct aaaccataca agctatccca ggtcgaagcc
      721 gctgctgtca cagaggaggt atcattgacc gccgttccag cgaacattcc aaagacctga
      781 cccgaatcag tcgaaaaccc aagccaagtt gccaaagtag gaaagaccaa ggctgccaag
      841 acattaaaga gaaagatgac cgagattgct tgtgccacat cctcatcatc tgcctgaata
      901 atgggagcag tcgccgcaat ggcagagcct ccacagatag aggtacctac gccaatcaag
      961 gttgccagat gagatgaaat gggcaagatt ttccacatca ggaatgccaa aatcaaagca
     1021 aaactaatgg tcgaaaaaat aattggaaga gattgacgcc caactgccaa gaccgctgat
     1081 aagtttaatc caaatcccaa acaaatcaca gcatactgta agattttctt agaagtaaag
     1141 gttaagcctg actgaaatgc atttttactt gaaaaatagg gatacaggct catcccaatt
     1201 agaagggcaa aaacaggccc acctacaagt ggaaataaat gacctaacca ctgacccacc
     1261 aaagccaaaa ggaaacaaag tccgacacct ttggcatttt cttttaccat aaaaacctcc
     1321 taaaatatca aacgtaacaa cgcggttgta acaacgccaa ccaagactgc taaaaggata
     1381 ttttttgttt tcaaaaccac aaaaaatgtc ggaagaatag ctaagctttc cacagggaga
     1441 aaacttggca aggagccaac tttctcatcc ataatactgg agagggtcaa tgcaaaaatg
     1501 atagtgattg gcaaaaagct gaggaatttc accaactttg gagggagaga tttattttgc
     1561 gtcaggacaa aaggcaggac gcgtggcacc caggtcacca gggccgccat tagaataatc
     1621 agtaaaatgt tagtttttat catcaatcat cacccccaca aagcaaccta atagtgtcgc
     1681 caagagcacc gccacatagg acgacaccat catagacaga ccgatatagg tcagaccgac
     1741 tgccagcaga attaagccaa tttttttcag cggaatggtc cgaaccatag cctctaactg
     1801 acctgcaaaa ataccgacaa acatggcaac caaggcaaag tccaatccaa actgctcagg
     1861 atttggaatg agaccaccaa tcagattgcc gagagtcgtg aatgtaaccc aagaggcgta
     1921 gcttgcaaaa ttatttccgt acatccattc tggagtaatg gtatgatgct caatctgctt
     1981 acgcaaaaga actgcatagg attcatccgt cacaaaggat cctatcaaga tattcgaccc
     2041 taaacgattt ccttgaaaaa tagttgtcgc atgcaagcac atcagaaaat ttcgcaggtt
     2101 gacaaagaaa acggttactg caatggataa caaaggcgca cctgcaaaaa tcatagcaca
     2161 cataacaaat tgagcactcc cggcatagat taataggctc atcagcccca tctccacagt
     2221 agaaatgccc gaattaaccg atacgactcc gcaggctaga ccaatactgg catagcccaa
     2281 tacagtggga atggcatcgc gcatcccttc acgaaaagca tatttcttca ttcattatct
     2341 cccttcctct cactaattga ttgaagaatt attctctcat tttctcacat tgcaacccgt
     2401 ttttcaagaa ttcttatatc taatactcaa tgaaaatcaa aagtagccta ggaaacgaag
     2461 ccgaagatag aactggagtt catcaaggca agttgacaac ggataatttt gattttcgaa
     2521 gagtataagt agaggtcttg ccctcattga tgtactttct gcataaaata gacccagccg
     2581 atagctgggc ctagggatag ggatgctact gttgtttctg aaggaccatc aaataagaag
     2641 taaagtcctt attgtctcca acatggtctc catgtcgaat cgacaaacct gtatgcatta
     2701 attggctacc agtataaact tctccatcaa ggtgatagac cgcttcctct tccaatccct
     2761 gcaaatacaa gcgttgatag gagagattag ccgttgttaa ccgacggtaa taacccacga
     2821 tgacttgctg accatccaag gattggacct gccaagccgt tatttctcca tcgaatggac
     2881 ttttcagccg agtaaaaata ccctgttgga aaagcttacg gtgagccttg taaaaggcaa
     2941 tctgctcctt catctcttcc aactcttctt ggctacactc aaacaaatcc aactcatagc
     3001 caaaacttcc aaagaatgca acattggcac gtgtgcttag tggagtagca cgccccaact
     3061 gctgattcgg actagctgac acatgacaac ccgtgctatt tagaggatat accatgctcg
     3121 ttccatattg gattttcaag cgttccatgg cgtccgtatc atcactgacc caggtttgcg
     3181 gtgcatagta gagcattccc gggtcaaatc tagctccacc acttgaacaa gattcaaaca
     3241 gaaccgtcgg aaaagccgct atcaggctat catataaacg gtagagattg agaatatagc
     3301 gatggaaggt ctccccttgc cgctccgcct cccttgtgca ggtaaatacc tctgtcatat
     3361 agcggttcat gtcccacttg atataatcaa tatcatgctc agccaacagc cgatggagtt
     3421 ggtcatgaat attttgataa acatcctccc ttgacaaatc caacgtatat tggtggcgtc
     3481 cgtgagattg actatgctga ggatgatgga aaatccagtc tggatgcgct cggtataaat
     3541 cgctgtcttt attaaccatt tcaggttcaa tccaaagtcc aaatttcatt cccatagcat
     3601 gaacttggtc aataatccct gtcaagccac ttggtaattt ctctcggttg accgtccaat
     3661 ctcccaagcc tgctcggtca tggtttcgct tgccaaacca accatcatcc atgacaaaga
     3721 gttcaacacc aagacctgca gcctctttgg ccaaggaaag aattgtttcc tcatcaaaat
     3781 caaaactcat ggcttcccag ttattcaaga gaacaggtcg ctctctatca cgccaatagc
     3841 cacgtaccag atgtttttgg aagaggcggt gataggtttg gctcatgcca ttcaaaccat
     3901 gctcgctata aaccataaca acctcaggcg tctggaactc ttctccctta tctaatgtcc
     3961 aagaaaaacg ctcaggatgg attcccatac tcactcttgt tttttggaaa gaactcacat
     4021 ccacctgcgc caaaaagttt ccgctataga cgagcgagaa gcctagtacc tctccctgtt
     4081 gctcatccgc agttgggcgt ttcaaagcca taaagggatt gtgctccgca ctactagccc
     4141 ctttgagact gtaaatagac tgacaacctt gatgaagagg cgatagttgc agatgccgct
     4201 cacgccccca agccccatcc aaatgcaacc aatcatagtc catatcaggc agacaaagtg
     4261 tcatactcaa ggcacggttc aaacagacag attgttctcc gagttgttca aaacgagcag
     4321 agcgagtcac cgctggataa tctcgaaaaa tcgtataaga caagaccagg cgggtctgcg
     4381 actcttcatc caacaaataa atatccaaac tatctgcctg tccctcctca tccagataga
     4441 gatgaggaag acccttcaaa gccgatcgcc cagcataaat cacatgacct tgatacacaa
     4501 agtgcgacag gctactaccg tccttctgca ccaactcaaa agtcggagaa aaatagtccg
     4561 ttgtaccata acaagcaaat tcaggattgg catattggag cgaaaagaaa cggtcatcgt
     4621 cttctacaaa ggaagtcaaa gcacgatact catcttcacg cacatactga taggaagctg
     4681 tttctgttac acgctttcca taatacaaac taccaatatg accattaggc aagaccgtca
     4741 acacatagct aataaactca ttgtaaagat ggaattcctt tgtcttttca tgaaagataa
     4801 ttcccattgt agcctcctat aattttccac cagatgtcgc aatcccttgg atgaactgct
     4861 tctggaatac cacatacagt accaacatcg gccaaatagc caaaacactt gcagccatga
     4921 gctgaggata gttaacagcg taagctccct gaatcttaga aagtgcgcta gacagggtag
     4981 ccttgtccgc ttctgagttg ataatcaatg gccacagcaa atccttgaaa gcaaacaaag
     5041 ccgtaaaaat cgctaaggca atcaagccag acttggccaa aggcaacatg accttaaaga
     5101 aggtctgccc gatattacaa ccatccaatt ttgcagattc ctccaattct tttggaagac
     5161 ccatgaaaaa ttgacggagc aagaatgtcc caaaggcact gacaattcct gggaatacca
     5221 gagcaaaaat cgtattgcgc ataccaagtt ggtcaatcat caaatactga ggaatgacga
     5281 ataactgagg tggcaccatc atttgaaaga ggaccagacc aaacaagaaa ttccgcccag
     5341 gaaactccag tcgagcaaag gcataagctg ccatggctga gaacatgacc gagctaaaaa
     5401 tacgatataa catcatcaaa atggtgttca gataaagtat cgggaaatta ttagtccgaa
     5461 tagcctccgt ataattgctc accatccagt tacttggtaa aaagtggaaa ggattcatct
     5521 gagtggattc ggttaccgtt ttaaaagacg tcaacaccat ccaaacaaat gggatcagca
     5581 tgcccattgc cactaaaatc aagaaggcat gcatccagat tgttgattta aaagctgatt
     5641 gtttcacatg aacctcctta acggtaatgc acccattttt tctgtacctt catctgaacg
     5701 aaagtaatga caagaataat taataacaac aacatgacga tggtggagcc atagccctta
     5761 tccgaatatt taaaggaatt attgtaaaac agataaacca gagatactgt cttatcatag
     5821 gcaggactac gaacatcctc catcatatag ataacatcaa agacttgcat ggattgaatg
     5881 acactggtta ccacaacaaa gaacagggtt ggtgaaacca agggcagggt aatggagaaa
     5941 aattgcttgg ccggactagc tccatcaatg cgagctgcct cataaaaatc cgttggaatt
     6001 tcttgcaaac cagctaaaat taaaatcata ctataaccaa ccgtactcca aattccaatc
     6061 aaagcgattg agtatagagc aatctttgga tcttcaatcc agttcacagc acccagtccc
     6121 aaacgacgca agatatagtt aatcaagccg aagtccgtat tgtagagcca tttccaaacc
     6181 atggtcactg cggctggtgc tgccaccata ggcaagaaga aaatggttcg ataaatatgc
     6241 ttacctttaa tcttagaatt aagcaaaact gcaagcaaca tggccaaggc aacggtagct
     6301 ggaacaacta gaatcgtgta cttcaaggta ttccatgtcg cctgccacac ttgcgcatcc
     6361 cctaacattc gttggtaatt tgccaagccg acaaaaatat cgcctttacc gaaatctcca
     6421 ctcttatgaa aactcatctt catggtttgg aaaataggaa taatattgag cacgattaat
     6481 ccaataatgg tcggtgctac cattccccat ccccaaattg cctcatttaa acttcctttt
     6541 tttcggaaca tcttatcccc atccttcttc attttaataa gaaggtccgg ggaagaatca
     6601 acttcccaag acctcctacc tatttttcag ttgctaattc agcattcatc atatcagctg
     6661 tttctttggc agcttcttca gttgcttttt ctccaagata agcaggtttc aatagctcat
     6721 aagccttatc ttcccacttg atggttgttt gtgaatatgg acgaatctgt gcataatcca
     6781 ccatgtcaac ataattcttg atagtaaagt ttttgtttga atctacccaa gtatctgccg
     6841 cgcctttata agccgagatt gccacaccaa gtgttgcctg catttcttgt gcctcttttg
     6901 agctgaggta ttcaacccat ttccaagcag catctggatg cttagtggta gcagcaatgg
     6961 catgacccaa tccattaaag atggttgcac gagttccatc tggacctttt ggcaagacag
     7021 ctacatcagc attttcacga atgtagtcat tagcagtgaa accagataaa ttccaagaac
     7081 cgaagacgct catagccact tgaccgtttt ggaatgcttc ggcccgctct ttatctactg
     7141 taatagccgg tgaaattttt tctttgacaa agctaaagta gtaatccaaa gcctcaatgg
     7201 tcttaggatc agcatagcct gatttcaaat catcagtaat aaccttacca ccattttgat
     7261 agataaagtt gtagtagccc tcttggttac tcaaaccagc accgaaacca tattgactac
     7321 catctggctt ggtcaatttc ttcgctactt ctttcaactt attccaatcc caagtatcat
     7381 ctggatatgg aatacctgct tcgtcaaata attttttatt gtaccaaaga ccgattgtat
     7441 cgaaatcttt tggaatagcg tactgcttac catttatgtt gtagatttca ttcaaaccat
     7501 ctgggaaatt agctagttta gcatcttcac tcttggctaa gtattcatcc aatggcaata
     7561 gcatttcatt ggaaccatag cgataaatct catttgaatg catccagaag gtatcaggca
     7621 atgaaccacc tgtcgcacca gcttctaaca tggtccagta ggaatcccag tccgatactt
     7681 gaatattgat tttaatatct ggattctttt tctcaaactc atccgcaatc tttctcaaac
     7741 caggctcttg accagaatcc caaatagcat aggatatttc tgtctttcct gaactacttc
     7801 cttccgtagt tttgctagac tcagtcgaag tagaacacgc tgccagcagg cctgcagccg
     7861 caagcaaggt aacatagcga ccaattttct tcatgataat actccttttc ttttgtcgaa
     7921 tatgtcgacg aactttgtta tttctactat aactataaca tgtaagcgct ttataatcaa
     7981 ataggaatat ttgacatatt ccatatgatt ttgggatatt ttttaatttt ttcaaataaa
     8041 atgtcacatt tacatataaa tatgctatac tatttgtaag cctttacact tttggtatgg
     8101 agaatacgat gaaaatacaa cctgaatttt acgtctttaa taacagatcc tatgtagatt
     8161 tttaccccat tcaatttggc atggaagcct gtaagccact tcactcattc ggcccaacta
     8221 tgaaacaaca ctacctgttt cactacatca tctctggttc aggtactttt tacgatactt
     8281 ccgaccaacg tgaataccac ctaaccgcag gacagggctt ccttatctcc ccagacgcca
     8341 tctgtagcta cgaagcagac gaaaaggacc cctggaccta tatctggctt gaatttgacg
     8401 gtctgaaaac tgagcatttt ctcagacagg cagggctctc gaaagaacaa cctatctttt
     8461 cacaacgaga aatgcccacc tctagccctg tctaccatga aatgaaacaa attctcgcgc
     8521 tccatcatca aaaaagcgct ctagttctcg gacaccttta cctctttatc tcctgcctca
     8581 ttgactgttc gctaaccaaa acaagtagca aacacgatga aaacaaggaa ttttatatac
     8641 gagaagctat caacttcgta gaacgaaact atgagaaagc tatatccgtc gatgatttgg
     8701 cacaagtatg caacctcaat cgccactact tcagtcggct attcaaggag caaatgaaca
     8761 tctcacctca acaatttatc atccaatacc gactcagcga agcctgcgaa ctcttaaaaa
     8821 acaccactaa gacactacag gaaattgctg aagaaatcgg ctactccaac caattcaatt
     8881 tttcaactgc ttttaaaaga cattaccaaa tttctccaaa tcgctggcga aaaatccaca
     8941 aataaacctc ttacgtatcc ttgacgtaag aggtttttat tctataaatt ctcaaaagcc
     9001 agactaggct tggcattgag gtcccagcca gcaaggtttt ccttattgta ctcactgacc
     9061 gctgctaagg caatcatacc tgcattgtca ccgcagaggc gaagcggggg aatgataacc
     9121 tccacatcgg taatttcagc agccaaccgc tctcgcaagc cctgattagc tgccacaccg
     9181 cccgctacca ccaaggtttt gacagggtat tgctccaagg ccttcttggt cttagccatg
     9241 agaatgtcca taacacaggc ttggaaagag gctgacaagt ccgcattgga caaggtctcc
     9301 cctttctgct gggcattgtg gtagaggttg ataaaggcgg atttcaaacc agagaaagaa
     9361 aactccagat tatcctcttt aatcatagcc cgagggaagt cataaatgtc ttgcccctca
     9421 tgtgccaatt cgtcaatcac ccgaccagct ggatagggca ggcccatgac ccgccccacc
     9481 ttatcatagg cttcgccgac cgcatcatct cgcgtttcac cgacaatctt atagtcgccc
     9541 gcctctgaca catagaccaa ttctgtgtgt ccaccgctga ccaagagggc caagagcgga
     9601 aactccaact ccttgaccgc acgcgccgcc atcaaatgcc ctgccatatg attgacagga
     9661 atgagtggca gaccgttagc ccaagcaaat gccttggcag ccgaaatccc aactagcaag
     9721 gcaccgacca agccaggccc ataggtcaca gccacagccg tcaggtcctc tgccgtcacc
     9781 tctgcctcca acaaggcctc ctcgatacaa gccgtaatca cttccacatg gtgacggctg
     9841 gccacttcag gcaccacccc gccaaaccgc tggtggctgg caatctggct agcaatgaca
     9901 ttggacaaaa gctccgcatc atttcgcaaa acagccaccg aggtctcgtc acaggaggtc
     9961 tcgatcgcca aaatcaatct atctttcatc acgttctctc ttcattagca ccgcgtcctc
    10021 gacaggatgg cggtagtagt cttttcgttt tcctattttg gtaaaatgct ggcgtgtata
    10081 gagggcctga gctgcactat tggactccct cacttcgagg aagatgtccc cctcccagtc
    10141 catcacagca gccatcagtt gactggcgat tcccaacctc tgaaaatcag ccttgacagc
    10201 aatctgcaag atttccatct catccagcac cgtctgaaca gccaaaaatc caactaattc
    10261 ctgaccctca taggccagat aataatcctc atcctgactg gctaggctag tcacaatctg
    10321 ttccaaggtc caaggcgatt gctcatagac cgactccatg actgccaaca cagcttccga
    10381 tagattttcc tgaccgtcgt agtacttaat ctctatcata cacgcttgat ataactttct
    10441 gagccagctt ggttgtcctt gagccagttt tcctctgcct ctacccgctt gagatagttg
    10501 ggctcaaagc tcgtcacatc tactgctggc aagtcttgac cgattactgc caattgatag
    10561 gcagacggta gactggcttg atactgagca gtcggcagag cttgctcgat ttgctcgata
    10621 aagtttgcta cttctccgac aaaggtgatg tcttccttcc cagacaggct agaaagtaag
    10681 tcttcaaaag accagtactt gtctgcctca actgctctgc cattttcata aagacctgca
    10741 tagacgcagt tacggcgggc atcaatgaga ggcaccacca gacccgtcag gctgggagga
    10801 accagagact gaagactgga tagccccacc aagtcaatct tgagggtgta ggccaaggtc
    10861 ttggcggtcg ccaccgccac acgaagaccc gtgtaggaac caggtccctc agccaccacg
    10921 atcctatcca agtctttggg cgtccatccc acctgtgcta ccaaaaaatc gaccacaggc
    10981 atgaggctga tactatgatt tttcttaacg gccagcaggg tttccgcctg caaacgaccg
    11041 tcctccacca aggcaactga taaagcctga ttggagctat ctaaagctag tattttcata
    11101 aatttctctt tctgtacaat gctaccctct attgtaagct atcttgacct ttttttcaaa
    11161 taatgaaaag aatcggttgt gatttctagt aggttaatgg atcgaaccga tttgtcattc
    11221 tagtaagtca catcactatc tggcagttga caggcatttc tcagcacaat tgaacttagt
    11281 cttagtaatc ccaacacact cggaatccta actcatttct ttgatttatc cccttctgaa
    11341 ataccgaatt tctgaaaatc atgacacttt tccattttcc taccaaaccc ttttaccatc
    11401 agcatatttt atgatataat gaagagtaca tttagactga ataaattgac aactcgagaa
    11461 aattgaatag atattaccag acagacccaa ctgtttgagg cttttttcat agttgccagt
    11521 caaaaagaaa ggaactatac tacacatgat ttataaagta ttctatcaag aatcaaaaat
    11581 tagcccacgt cgcgagcaaa cacgtgctct ttatctagac atcgatgctg catcagaatt
    11641 ggaaggtcgt attatcgcgc gtgaattggt ggaaaccaac cgccctgaat acaacatcga
    11701 atttatcgac ctcttatcag acaatcatct tgaatacgag aaagagcacg cagatttcaa
    11761 aattacggag ttttaatcca tgtcatcagt caatctaaaa cctcatgaag ttggcgtttt
    11821 cgccatcggt ggtttgggag aaatcgggaa aaatacctac ggtatcgagt ataaggatga
    11881 aattctcatc gtcgatgccg gtatcaagtt cccagaagat gacctattgg gtatcgacta
    11941 cgttatccca gactactcct acatcgttga aaacctagac cgtgttaaag gtctggttat
    12001 tacccacggg cacgaagacc acatcggagg cattcccttc ttactcaagc aggccaatgt
    12061 cccaatctat gctggacctt tagcccttgc ccttattcga ggcaaattgg aagaacacgg
    12121 actgctccgt gatgcgactt tgcatgaaat caatcataat actgagttga ccttcaaaca
    12181 cctcaaggtc agcttcttcc gcaccaccca ctccattcca gaaccacttg gtatcgtcgt
    12241 tgacaccccg caaggaaaaa tcgtctgcac cggtgacttc aagttcgact tcactccagt
    12301 tggcgagcca gcagaccttc accgcatggc tgccctcggt gaagaaggcg ttctctgcct
    12361 cctctccgac tcgacaaatg ctgaggtccc aacctttacc aactcggaaa aagtggtcgg
    12421 tcagtccatt atgaagctga ttgaaggcat tcacggacgc atcatttttg cttcctttgc
    12481 ctccaacatc ttccgtctcc aacaggcggc tgatgcagcg gttaagaccg gacgcaagat
    12541 cgctgtcttt ggacgttcca tggaaaaagc cattgttaac ggtatcgagc tcggctacat
    12601 caaggttcca aaagacacct ttatcgagcc aaacgagatc aaagagtatc ctgccagcga
    12661 gatcatgatt ctctgtacag ggagccaagg ggagcctatg gcagcactct ctcgcatcgc
    12721 ccacggtacc caccgtcagg tgcaactcca gccaggcgac acggttatct tctcgtccag
    12781 tcctattccg ggaaatacca caggtgtcaa caagctcatc aatatcttaa ttgaagccgg
    12841 tgtcgatgtt attcacggca agatcaacaa catccatacc tctggacacg gtggtcaaca
    12901 agagcaaaaa ctcatgctcc gcctaatcaa gccaaaatac ttcatgcccg tccatggtga
    12961 ataccgcatg caaaaaattc atgccagcct agctgttgat acaggcgttc caaaagataa
    13021 tatcttcatc atggaaaacg gagatgtcct tgctctgaca aaagattctg cacgtctcgc
    13081 aggtcaattc aacgcccaag acatctatgt tgatggaaac cgcatcggtg aaatcggcgc
    13141 agctgttcta aaagaccgtc gcgatctttc agaagatggt gttgtccttg cagtagccac
    13201 tgtcgatttt aattctaaga tgatattagc aggaccagac atcctcagcc gtggcttcat
    13261 ctatatgaga gaatctggcg agctcattcg cgaaagccaa cgcgtccttt tcaacgctat
    13321 ccgcatcgcc atgcgcaata aagatgccaa tatccaaaca gtcaacggcg ccattgttaa
    13381 cgccctacga ccattcctat acgaaaaaac agagcgtgaa ccaatcatta tcccaatgat
    13441 tctgacgcct gaccgataac acactaaaat cccagaggtg agacctctgg gatttatttt
    13501 atattaacaa gataacccag cttgtaaaaa gacagatttc aagctcatgt ccatcccctc
    13561 gccctgctat ttattagctc agactgaaac agtctcttcc caggctattt cactccactg
    13621 gaccattaca cgctttccaa tttctcggct cgtgaacaaa ggacccgtcg gggtcccaat
    13681 tcgctatctg gttttcaagc tcatgaaaaa atggtccaag cgccattact cgctctctga
    13741 ttttcaagct catgaacaaa ggacccgtcg gggtcctttg tttaatacat atccaaatag
    13801 ttgtcaattt cccattgaga aacgtaggtt gcatagcttg cccattcgat tttcttagct
    13861 tccaagaagt tagtatagat atgatcaccc aatgccgaac gaacaacatc atcttttctc
    13921 aaggctttaa gcgcattgtg aagagttgat ggaagatctg taataccagc ttcgcgacgt
    13981 tcttcatctg acattgcata aatatttgat tctactggag caggagcctc aatcttgtgt
    14041 tcgataccat ctaatccaac ttccaaaaga actgccatag ccaaatatgg gttagccgtt
    14101 ggatctacag aacgcaattc taagcgagtt cccattccac gtgatgcagg tacacgaacc
    14161 aatggagaac ggtttttgcc tgcccaagca atataaacag gagcttcaaa accaggtacc
    14221 aaacgtttgt atgagtttac tgtagggttg gtaattgcag tgtagttata agcatgttta
    14281 atcaaaccac cgaggaagtg ataagctgtc tctgacaatt gcatgccacg aggatcttct
    14341 ggatcaaaga aggcattatt accgtcttta tcaaagagtg acatgttaca gtgcatacct
    14401 gaaccagcaa ttccaaattt aggtttagcc ataaatgtag cgtacaagcc atgttttcgt
    14461 gcaatcgtct taacaaccaa cttaaagatt tggatattat cacacgcctt caaaacatcc
    14521 gcatatttaa agtcgatttc atgctgacca accgctactt cgtggtggct cgcttcaact
    14581 tcaaatccca tttcagtcaa aacatttaca atttcacgac gagtattgtc cgcaagatct
    14641 gtaggcgcca agtcaaagta accacccttg tcattcactt caagagttgg attcccctgc
    14701 tcatccattt tgaacaagaa gaattctggt tctggaccaa ggttaaagga tgagaatcct
    14761 tctttttcca tccgacgaag agattttttc aagtttccac gaggatctcc cgcaaacggt
    14821 tcaccttcag tcgtataaat atcacaaatc aagcctgcca cacggccatt ttcatctccc
    14881 caaggaaaaa tagtccatgt gtttaaatct ggataaaggt acatatcaga ttcattaata
    14941 cgtacaaaac cttcaataga cgaaccatca aacataactt tatttgataa aactttttca
    15001 acctgctctt ctgtcgcagg aatctctacg tttttcatca ctcccataat atcagtgaac
    15061 atgagacgta gaaatgtaac atttttctct ttaatatcac gtttaatatc cgctgttgtg
    15121 acaaccatat tttttctcct cttaattaaa cctattacga cgaccgaaag atcgagcttg
    15181 gacttgaaaa tcgcccttgt ctgctaaatt catcatgtag gatacgacgc acatcctcat
    15241 cagttaaagt tttctgttct gcttgaacct tttcctttgc tttacgattg gcgtattctt
    15301 ttttaatcgc tgcaatgttt aggccctcat ccaaaaaatc tttaatttca agtagtaagt
    15361 ccatatcatt tagagaatac aagcggcgat taccttcgtt ccgaactggt tttatcaaac
    15421 cgtgatcttc atagtaacga atctgacgcg ctgttaaatc agtcaatttc attacactac
    15481 caattggaaa aatagctaag gaacgtcgaa actctttttc tctcataatg aactcctttc
    15541 tgcacactat tatagggcag aaaaaacgaa cagtcaagcc ctctgtgtca cattttatga
    15601 cactgttagg aaagaaagcg cttttttatt ttatcgatat cgtaatttac aataacagat
    15661 acaaaaactc caacgaatgt ttcaaaaact ctttggaggg cgtagaaaat agaatctcct
    15721 gcaggaactg agagagcaat gatcaacatt gtagcaaccc cgctaataac acctggagca
    15781 ttattaaacg aaacattcgt cataatagtt agcatcgtaa aaatagggat gaaaattaag
    15841 gtcacccaaa aattatgaga aaatagatca cttagaataa aataaagcaa ggcataaaag
    15901 ccacctatgg aattactaag tacacgggaa gagccaaaat gcacactttt cccaaaatct
    15961 tcacgaagac tgaaaactgc tgagagagcc gcaatctgaa taccatccca ttttaaaaga
    16021 tgaaacaata aaatgactaa aaatacagct agacctgatt ttaaagttct catacccaat
    16081 ttaaacttct gggtatcaaa tttatatctc tttaacatac ttctattcta acatgatttg
    16141 ttaaaaaatg attctaaatg cacataatgt tatgaatcat tcggacattt tagtgtaaaa
    16201 ataataccag atacttcaac gccaccaaaa aaaagaactc ccaactttac aaaaaaataa
    16261 gtatcctata gttgattata atacgagaca agaagccaca agcataagtc gagcttaaaa
    16321 aggtgagttt acgaagtaat actcaatgaa aatcaaaaaa atgattacac aacaaaattt
    16381 ttcctccgag ccgacacttc agagcgtaaa ttgcatttaa aaagagaccg gagctcaagc
    16441 cccagcctca tttcgtcgca attttttact tttcagtaag agctgcaagt cctggaagca
    16501 cttttcacct tgctagactt tctaactcgc ttagcttcgt agaaactcta cgcgatgcac
    16561 aaaatgcaac ggaaatccgt tgcattttag cctttaccta ggctgatttt ctaaactcac
    16621 tacgttcaca gaaaatctag cctttgtact agaaaagagt tggtctccca actcttttca
    16681 tcgttcatct ttcatacgca gtagctgaat ggcagttcac tttgctacgc ttgtgaccaa
    16741 cctattcagc cttgcggggg tgcgtctacg gaatcataga ttcctgactt accgcctatt
    16801 tttcagtcaa agctgcaagt cctggaagca ctttaccttc gaggagttcc attgatgcac
    16861 caccaccagt tgagatccat gagaacttgt ctgcacggcc aaggttgatc gcagctgccg
    16921 ctgagtcacc accaccgatg attgatttca cgcctggttg tttcacgata gcgtccatta
    16981 caccgattgt accagcttgg aagtctgggt tttcaaatac acccataggt ccgttccaaa
    17041 caactgtttt tgcaccagtc aacgcttcgt caaacttagc gattgactta ggaccgatgt
    17101 caagaccaag gaagccttct gaaactgctt caccttcagt gtcgcgaact tcagtgtatc
    17161 cagcaaatgc atttgcttct tttgagtcaa ctggcaagat caatttacca ttcgctttct
    17221 caagaagcgc ctttgccaca tccaatttat cttcttctac aagtgagtta ccaatttcga
    17281 taccttgagc tttgtagaat gtgtaagtca taccaccacc gataagaact ttgtctgctt
    17341 tttcaagaag gttctcgata acaccaatct tatcagatac ttttgaacca ccaaggattg
    17401 ccacaaatgg acgctctgga gtttcaacag cttcttggat gtatgcaatt tcgttttcca
    17461 aaaggaaacc agctactgct ttttctacgt ttgctgagat accaacgttt gatgcgtgtg
    17521 cacggtgtgc agtaccaaat gcatcgttaa cgaagatacc atcaccaagt gaagcccagt
    17581 atttaccaag ttcttcgtcg tttttagatt ctttcttacc atcaacgtct tcgaaacgag
    17641 tgttttcaac aaggagaact tgtccatctt ccaaagcatt gatagccgct tccaattcag
    17701 caccacgagt agcaccagcg atgaaagcaa cttcttgacc caatttagct gccaagtcag
    17761 ctgctacagg agccaatgat ttaccttctt tgtcagcttc ttctttcaca cgaccaaggt
    17821 gagagaaaag aattgcacgt ccaccttgct caagaatata cttgatagtt ggaagagctg
    17881 ctgtaatacg gttatcgtta gtgataacgc catctttcaa aggcacgttg aagtccacac
    17941 gaacaagaac ttttttgcct ttcaattcta catctttaac agtcaatttt gccattagat
    18001 aagaactcct taaattatat ttactttacc attgtatcat attttctgta ttttttcttg
    18061 cataaagata tttttttcac aaatgttatg aaatctaaaa ctatcacctc gtaatcagat
    18121 ttttcaaatt ctaaaatcgc caaatcagaa acaactcatc tcattcatat ttttagcata
    18181 agaaaacagc catattccag caatccgaaa atacaaaaaa aagaggccg
//
LOCUS       DASGCC010000031        17635 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.031, whole genome shotgun sequence.
ACCESSION   DASGCC010000031 DASGCC010000000
VERSION     DASGCC010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17635
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.031"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(21..1352)
                     /locus_tag="U1404_000722"
     CDS             complement(21..1352)
                     /locus_tag="U1404_000722"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015511317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEM5347695.1"
                     /translation="MTKTYHFIGIKGSGMSALALMLHQMGHKVQGSDVEKYYFTQRGL
                     EQAGIQILPFDEKNITADVELIAGNAFRPDNNVEIAYVDAQGYTYKRYHEFLGEFMKG
                     FTSLGVAGAHGKTSTTGLLAHVMRNITDTSFLIGDGTGRGSANAQYFVFESDEYERHF
                     APYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVKKALLVFGEDEQLRRITANA
                     PIYYYGFEENNDFVAYDLKPSTSGSQFKVRHGEEELGEFQIPTFGKHNVMNATAVIAN
                     LYIAGFDLQLVAEHLKTFGGVKRRFTEKIVNDTVIIDDFAHHPTEIIATIDAARQKYP
                     SKELVAIFQPHTFTRTIALLDEFADALNGADAVYLAQIYGSARETDNGQVKVEDLAAK
                     INKKGGLVTVENTSPLLDHDNAVYVFMGAGDIQSYEYSFERLLSNLTNNVQ"
     gene            complement(1354..2016)
                     /locus_tag="U1404_000723"
     CDS             complement(1354..2016)
                     /locus_tag="U1404_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347696.1"
                     /translation="MIRHEKRFPLVADDEVLVGENPIMSLYDESDLISNIRGLYQEKE
                     FSWSTESQRVASAKPVAQTEDELLPPLFEAKPSHYSRKERLQQLTKTKPSPVKTQGQL
                     AREQAREDLKKKRSATYLRDEKPAPAKVVVKPPVVSTTESKAGRLTRLADNLRQTDYI
                     LADMPAVYSLKKEDREQEQVIKKNSYDFLRKSQVYNYPERRQQRDRQVAQELNLTHIE
                     EE"
     gene            complement(2095..5187)
                     /locus_tag="U1404_000724"
     CDS             complement(2095..5187)
                     /locus_tag="U1404_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5347697.1"
                     /translation="MGRMMPGRIRQEGIDLYEAGKLTVLHSENGKMVLDIAGERFTYG
                     DADSDLQCSCQLFQSKGYCQHLAATEYFLKNDASGKDMKQSLKEDSEQHKETVRRTYF
                     GGLFLDEILRPEPELGLKYQLSVEGSLLPYDRQIDWTLKITRLPDTRSYIVRDIGAFL
                     RIVKANGHYQIGKNYYEQVTYENFDEPSQALLDFLWALVPEKVGIDSDILTHFGRHFR
                     LPQAYFEEGLELLNQLEHFNFSYQQQSYSSLKVLPLTGEEGLYHFEVTVHTQMIEMVI
                     HEKTVRPLFHGRYLLVNGTVYSVNRHQEHLIYQISELVPTESGLRKVQVDFPDQNRLA
                     LSLLDLQTIGTVKAPKRFIIHDFKPEFHIQMEANESLSLQLVLDFDGRKVRSEEDLAL
                     LPFASHFQHLERVYQAIRLAGFRGTYHAQRAALSQQELYPFFQQQLPILQKMGQVHLA
                     ERLQALYIEAKPQLEIVRNGSLLDISFDLSGIEQSEIDQAITALLNQEDHYTSPSGKV
                     FVFDEETKKISQTLIYLRARHGKEGQVQVHALAGYQLAQSLSQFNQVSFSKEFEEMAS
                     YLAQPDLFPLPAVEVTTSLRDYQQTGLKWLTMLDTYGFGGILADDMGLGKTLQTIAFL
                     SSRMTKDSKVLILAPSSLIYNWLDECKRFAPSLDVAVVHGNKEQREEIIANGHQVLVT
                     SYPSFRQDVALYKQERFDYLILDEAQVMKNAQSKIAQLLREFEVGNCFALSGTPIENH
                     LTELWSIFQIVLPGLLPGKQDFGKLAAKDIARTIQPFVLRRHKEDVLQELPDLIEVNV
                     LNELTDEQKAIYLAQLQQMRTQIAGADDAQINRSKIEILSGITRLRQICDTPSLFMEE
                     FSGESGKLNSLKELLLQLKEGEHRVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPA
                     NQRQEMTQAFNAGSRDAFLISLKAGGVGLNLTGADTVILVDLWWNPAVEAQAISRAHR
                     MGQTEKVECYRLITRGTIEEKIQELQENKKNLVKTVLDGNESRANLTVEDIREILGIE
                     "
     gene            complement(5327..5635)
                     /locus_tag="U1404_000725"
     CDS             complement(5327..5635)
                     /locus_tag="U1404_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347698.1"
                     /translation="MEFFGELLVEFLTGLADFDEKKHPPFGIRYWLGWLGVLIHVLLL
                     ALLTCVTVFFFKFFLVGKGLINVVVAVVFLLFALFWLWKSGKTILKMWQATIYYLAIH
                     "
     gene            complement(6043..7353)
                     /gene="der"
                     /locus_tag="U1404_000726"
     CDS             complement(6043..7353)
                     /gene="der"
                     /locus_tag="U1404_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEM5347699.1"
                     /translation="MALPTIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYA
                     TGEWLNRKFSLIDTGGIDDVDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEY
                     VSRILYKTNKPVILVVNKVDNPEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAII
                     ENLPVQEAEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFT
                     DPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDK
                     RIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEDDIRDQFQYLSYAPIIFVSALTKQ
                     RLHKLPEMIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKP
                     PTFVVFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK"
     gene            complement(7372..8085)
                     /locus_tag="U1404_000727"
     CDS             complement(7372..8085)
                     /locus_tag="U1404_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM5347700.1"
                     /translation="MNETIDLMLNHTSVRRFTEEPIEAEHLQAIISAGRAASSWKNFQ
                     SYSIIVVQLEEKKQALYDLVPQPAILQAQAILVFVGDHNRASKAAQLHGSDFDAKGTE
                     NLLISSVDASLAGQNALLAAESLGYGGVFIGMIRHKAMAIAELFNLPDYTYPIFCIAL
                     GRPAQNHPVKPRLASETIVFQEEYVEQGVEVIQAYDQVQTAYAGARQTETWSERMVAQ
                     FGQAEQPETKSILEKNKLL"
     gene            complement(8082..8981)
                     /gene="dnaI"
                     /locus_tag="U1404_000728"
     CDS             complement(8082..8981)
                     /gene="dnaI"
                     /locus_tag="U1404_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HEM5347701.1"
                     /translation="MKSVQDRLSQTTNPSPKSYQQLYQEIVSDPEVAAFIKKEGLTQQ
                     EITLSISKFLEYISQRDLFVKQDEAYIAKGYQPVLVMNEGYADVSYLETEELVEYRRL
                     EAIKNRIQLINMPASLKNVTVADIDKSDENRVEVMLAIADFVKRFEEKPKGLYIYGNF
                     GIGKSYLMAYLANLLSKTHLQSTTMLHYPTFVVDIKNAIKDGSVKERIDEIKMAQVLV
                     LDDIGAEQHSPWVRDDVLQVILQYRMQENLPTFFTSNFSFDDLERHFASGKSGDETWQ
                     AKRVMERIRYLARDLHLKGNNRR"
     gene            complement(8981..10132)
                     /locus_tag="U1404_000729"
     CDS             complement(8981..10132)
                     /locus_tag="U1404_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation/membrane attachment
                     protein"
                     /protein_id="HEM5347702.1"
                     /translation="MKPNDLFAYIKISPFTPDIVSLSQCYQPIIGFDALALYYYFYSF
                     ADQGQGRYKWTVILNHMDFGMNRLEKALDVLTAMGLLELYRADELTGLALQAPLTVKS
                     FLAKPLYKNLLARKIGESSMENLLVHQPNQEQNISKTFSQVFTMDGQAPVVFEPKHDF
                     DWSAFKALMAKDKLLFQDEAEDIIALSYIAEQAGWTWLETYRQAKATAIGQTISTKRL
                     QQSRQSLPTENANLTAQEQAIVREAKSKSSLTFLSFIKEQRKAAVTGTERKCLTDLAN
                     LGLLDEVINVLVLYTFNKVDSANLNEKYAMKLGNDFSYKGIVSAEAAVLYLRELKTGQ
                     VVTKSSQPQKTNVPEWSKEEVQQGQTQEGQAKLAALYRELEEMENKGGS"
     gene            complement(10119..10610)
                     /gene="nrdR"
                     /locus_tag="U1404_000730"
     CDS             complement(10119..10610)
                     /gene="nrdR"
                     /locus_tag="U1404_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HEM5347703.1"
                     /translation="MRCPKCQSLKSSVIDSRQAEDGNIIRRRRSCDQCGQRFTTYERI
                     EEKTLVVVKKDGTREQFSREKIFNGIIRSAQKRPVSTDDIDEVVNRIEQKVRAQGDSE
                     IESDVIGNLVMEELVELDEITYVRFASVYRSFKDVGELENLLKQMISKGSKVKPGKKD
                     ETK"
     gene            complement(10682..11812)
                     /locus_tag="U1404_000731"
     CDS             complement(10682..11812)
                     /locus_tag="U1404_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM5347704.1"
                     /translation="MNTSFKEKVILILLSGATLLAVLNWSSIYGAIQQLLGSMNSLFI
                     GAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVVIVLPTLVT
                     TVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLISSLVTPI
                     LSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAVRVVNYI
                     GEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLSFVPYIGPFS
                     ACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG
                     GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQGELLAESE"
     gene            complement(11902..12591)
                     /locus_tag="U1404_000732"
     CDS             complement(11902..12591)
                     /locus_tag="U1404_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEM5347705.1"
                     /translation="MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHE
                     TDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVVVEPTEVSQYGEEVLSYAVSYVV
                     KPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
                     REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIK
                     TVRGVGYAMRD"
     gene            complement(12673..14100)
                     /gene="gndA"
                     /locus_tag="U1404_000733"
     CDS             complement(12673..14100)
                     /gene="gndA"
                     /locus_tag="U1404_000733"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HEM5347706.1"
                     /translation="MTKANFGVVGMAVMGRNLALNVESRGYSVAIYNRSADKTEDVVA
                     SNPGKNLVPSYDVESFVASIEKPRRIMLMVQAGPGTDATIQALLPHLDEGDILIDGGN
                     TFYEDTIRRSKELANSGINFIGTGVSGGEKGALEGPSIMPGGQKEAYELVADVLEEIS
                     AKAPEDGAPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYDLMQHLLGLSVDEMAD
                     IFTEWNKGELDSYLIEITADILKRKDDQGQDGPIVDYILDAAGNKGTGKWTSQSSLDL
                     GVPLSLITESVFARYISTYKDERVAASKVLPKPAPFAYEGDKAELVEKIRQALYFSKI
                     MSYAQGFAQLRVASKENNWNLPFGEIAKIWRAGCIIRARFLQKITDAYGRDEDLANLL
                     LDEYFLDVTAKYQQAVRDVVALAVQAGVPVPTFSAAITYFDSYRAENLPANLIQAQRD
                     YFGAHTYNRKDKEGIFHYDWYSESK"
     gene            complement(14197..14736)
                     /locus_tag="U1404_000734"
     CDS             complement(14197..14736)
                     /locus_tag="U1404_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEM5347707.1"
                     /translation="MFHIYDIQKNLDGISFDKTLDLQEELQARNGEVLGLSPVEVTGN
                     IRFESGFFFLDYQMTYDITLASSRSLQPVVLHEVQNVNELFVANEAVLKEQDLIDEDM
                     VLVVEDDHIVLDESVADNILLAIPIKVLTPEEEAGQELPSGQAWALMTEEDFQQKAQE
                     KKEANSPFAQLQGLFGDED"
     gene            complement(14746..15663)
                     /gene="trxB"
                     /locus_tag="U1404_000735"
     CDS             complement(14746..15663)
                     /gene="trxB"
                     /locus_tag="U1404_000735"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEM5347708.1"
                     /translation="MYDTVVIGAGPAGMTAALYAGRSNLKVALLERGIYGGQMNNTAE
                     IENYPGYDHISGPALAEKMFEPLEKFGVDHIFGTLVRIEEEGQIKKVITEDGVLETKT
                     VVLAMGAKHRLLGIPGEDTYNSRGVSYCAVCDGAFFRGQKLLVVGGGDSAVEEALFLT
                     QFAESVTIVHRRDQLRAQKVIQDRAFANEKINFIWDSVVEEIKGDDLRVQSVVIKNVK
                     TEEVSELDFGGVFIYVGLDPMTDTVADLGITDEAGWVITNEKMETTQSGIYAIGDIRQ
                     NQLRQIATAVGNGAVAGQEVYNYITELAE"
     gene            complement(15677..15901)
                     /locus_tag="U1404_000736"
     CDS             complement(15677..15901)
                     /locus_tag="U1404_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4059 family protein"
                     /protein_id="HEM5347709.1"
                     /translation="MLQNILSFYLQGLLIASLLIITSSLVWFIWRATKGVDKTLQERQ
                     DFLFDLLMINVMTIPIAAFGVVGILLMFKA"
     gene            complement(15919..17262)
                     /locus_tag="U1404_000737"
     CDS             complement(15919..17262)
                     /locus_tag="U1404_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007517532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5347710.1"
                     /translation="MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGE
                     SKTGSGKTHTFLIPIFQKLSEELDQVQAVITAPSRELATQIYQAARQLASHSDIEVRV
                     TNYVGGTDKNRQIDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLD
                     MGFLETVDKIAGSLPKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIE
                     NWLISTKGHDRNAQILEVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDI
                     PPRERKRMMNQVKNLDYQYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTG
                     RNGLSGIAITLYQPSDDADIRELEKLNIKFLPKEMKNGEFVDTYDRDRRANREKSREK
                     LDLEMIGLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKRQTF"
     gene            complement(17342..17605)
                     /locus_tag="U1404_000738"
     CDS             complement(17342..17605)
                     /locus_tag="U1404_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIB"
                     /protein_id="HEM5347711.1"
                     /translation="MIGVKITKKTVEKTIANAVPILGGLISGGLTYFTFQPMGGMLAD
                     TFVKKINGDFDGELELTEAFKASLEEEKELGIIEAEFTEASES"
BASE COUNT         5028 a         4116 c         3360 g         5131 t
ORIGIN      
        1 ataggcctcc gtctttcttt ttattggacg ttatttgtaa gatttgacaa gagtctttcg
       61 aaggaatatt cataggactg aatatcacca gctcccataa atacatatac tgcattgtca
      121 tggtctaaaa gtggtgaagt gttttcaact gtaacaagtc cacctttttt gttgatttta
      181 gccgccaaat cttctacctt aacctgacca ttgtctgttt cacgcgctga tccataaatt
      241 tgagcaaggt aaactgcatc tgctccattc aaagcatctg caaactcatc gagaagcgca
      301 atggtacgag tgaatgtatg tggttggaag atggctacca actccttgct aggatacttc
      361 tgacgtgccg catcaatggt tgcaatgatt tccgttggat ggtgagcaaa gtcatcaatg
      421 ataacagtat cattgacaat tttctccgta aagcgacgtt tgacacctcc aaatgtcttc
      481 aagtgttctg caaccagttg caaatcaaat ccagcaatat agagattggc aataacagct
      541 gttgcattca tcacattatg cttaccaaag gttggaatct ggaattctcc cagttcttct
      601 tcaccatggc gaactttgaa ttgtgaacca cttgtagaag gcttcaagtc ataggcaaca
      661 aaatcgttgt tttcctcaaa accatagtaa taaattggag catttgccgt gatacgacga
      721 agttgctcat cttcaccaaa aacgaggaga gcttttttta cttgcttcgc ataatcattg
      781 aaagcattga aaacatcctc tagactagtg aaataatctg gatggtcaaa atcaatattg
      841 gtaatgatgc tgtattcagg atggtatggg gcaaagtgac gttcgtattc atcggattcg
      901 aacacaaaat actgagcatt tgccgaaccg cgaccagtac catcaccaat caagaaggaa
      961 gtatctgtga tattgcgcat aacatgtgcc aataatcccg ttgtagaggt cttaccatgg
     1021 gcaccagcaa caccgaggct cgtaaaacct ttcataaatt cacctagaaa ttcatggtaa
     1081 cgtttgtagg tatagccctg ggcatcaaca taagcgattt ccacattgtt atctggacga
     1141 aaagcattac cagcaatcaa ttcaacatct gctgtaatat ttttctcatc aaacggtaaa
     1201 atctgaatcc cagcttgttc aagcccgcgt tgtgtaaagt agtatttctc tacatcacta
     1261 ccttgaacct tgtgccccat ttgatgcaac ataagagcaa gtgcgctcat acctgatccc
     1321 ttaattccga taaaatgata ggtttttgtc atgttattcc tcttctatat gtgtcaaatt
     1381 caattcttgt gccacttgtc gatctcgttg ttgtctgcgc tcaggataat tgtaaacctg
     1441 actttttctt aaaaagtcat acgaattttt ctttataacc tgctcctgtt ctctatcttc
     1501 tttcttcaaa gaatagacag ctggcatatc agcgagaata tagtctgtct gacgtaagtt
     1561 gtccgccaaa cgtgtcaacc gacctgcctt agattcagtt gttgaaacga caggaggttt
     1621 caccacaact ttagctggtg ctggtttttc atctcttaag taggttgccg atcgtttttt
     1681 cttcaagtct tctctagcct gttcgcgagc caactgcccc tgtgttttca ctggagaagg
     1741 cttcgtttta gtcagttgct gaaggcgttc ctttcgagaa taatggcttg gcttagcttc
     1801 aaacagagga ggcaggagct catcttccgt ttgtgctact ggttttgccg acgcaactcg
     1861 ctgtgattcg gtagaccagc taaattcctt ttcttgataa agccccctga tattgctaat
     1921 caggtcgctc tcatcatata aactcataat tggattttct ccaactagta cctcatcatc
     1981 tgcgactagt ggaaatcttt tttcatgtct aatcataagt catcctttcg aacccttatt
     2041 ataccatact taggccttat ttcctaattc tacgctgagt caactgattc catatcactc
     2101 aatccctaaa atctcacgaa tatcctcaac cgtcaaattc gctcggcttt cattgccatc
     2161 aaggactgtt ttgacaaggt tctttttatt ttcttgcaat tcttgaatct tctcttcgat
     2221 tgtccctcta gtaatcaggc gatagcattc aaccttttca gtctgcccca tgcggtgagc
     2281 ccggctgata gcctgtgctt ccacggcagg attccaccaa aggtcgacta ggatgactgt
     2341 gtctgcacct gtcaaattca agccaacgcc acctgctttc aaggaaatga gaaaggcatc
     2401 tcgacttcct gcattgaagg cctgtgtcat ttcttggcgt tggttagcag gtgttgaacc
     2461 agtcagagta taggatgtca tcccaatttc taccagctgt tcttctattt tttccagcat
     2521 atttctgaat tgggagaata tcaagaccct gtgttcacct tcttttagct gcaagagtaa
     2581 ttctttcaaa ctattaagtt tgccactctc accactaaac tcttccatga aaaggctggg
     2641 ggtatcgcag atttgacgta agcgagtaat tcctgatagg atttctatct tgctacgatt
     2701 gatttgagca tcatctgcgc cagctatttg agtccgcatt tgttgaagct gggctaggta
     2761 gatggctttt tgttcatctg tcagttcatt aagtacattg acctctatca aatcaggcaa
     2821 ttcctgaaga acgtcttcct tatgacgtct gagaacgaag ggttgaatgg tccgcgcaat
     2881 gtccttggct gctaatttac cgaagtcttg tttgcctggc aataaacctg gtaagacaat
     2941 ttggaaaatg gaccagagtt ccgtcaaatg gttttcaatc ggcgtacctg agagggcaaa
     3001 gcaattccca acctcaaact cacgcagtag ctgtgcaatc ttagattggg cattcttcat
     3061 gacctgcgcc tcatctaaaa tgaggtagtc aaagcgttcc tgtttataga gtgcaacatc
     3121 ctgtctgaag gatggatagg aggtaactaa gacttggtga ccattggcaa tgatctcttc
     3181 acgctgttcc ttgtttccat ggacaacagc cacatctaaa cttggagcaa accgcttaca
     3241 ctcatctaac cagttataaa tcaagctaga cggtgccaat attaaaactt tggaatcttt
     3301 tgtcatccga ctggacagaa aggcgatagt ttgcaaggtc tttccaagcc ccatgtcgtc
     3361 agctaaaatt ccgccaaaac catacgtatc cagcatagtc aaccacttaa gccctgtctg
     3421 ctgataatcc ctaagcgacg ttgttacttc cacagcagga agcgggaaca aatctggttg
     3481 agctagatag cttgccattt cctcaaattc cttggagaaa ctgacttggt tgaattgtga
     3541 caaggattga gccaattggt aaccggcaag agcatggact tgtacctgcc cctccttacc
     3601 atgacgggcc cgcaaataga ttagggtttg actgattttc ttggtttcct catcaaaaac
     3661 aaatacctta ccgctcgggc tagtatagtg gtcctcttga ttcagcaagg ctgtaatcgc
     3721 ctgatcaatt tcagattgtt caatacctga taagtcaaac gaaatatcca aaagtgagcc
     3781 gttacgcaca atttctaatt gaggtttggc ttcaatatat aaagcctgta gcctttctgc
     3841 tagatgaacc tgccccattt tttgtaatat aggcaattgt tgttggaaaa atggatagag
     3901 ctcctgctga ctaagagccg ctctctgggc atgatatgtc cccctaaagc cagctaaacg
     3961 aatagcctga tagaccctct ccaaatgttg gaaatggctg gcaaaaggca ggagagccaa
     4021 atcctcttca ctccttacct tacgtccatc aaaatccaaa accaattgga gggataaact
     4081 ttcatttgcc tccatctgaa tatgaaattc tggcttgaaa tcatgaatga tgaagcgttt
     4141 aggtgcctta acagtcccaa ttgtctgcaa atccagcaag cttaaagcca gacgattttg
     4201 gtcagggaaa tccacctgca cttttctcaa acctgattcg gttggaacaa gttcggaaat
     4261 ttggtaaatc agatgttctt gatggcgatt gacactataa accgtgccat ttactaagag
     4321 atagcgccca tgaaaaagag gtcggactgt tttttcgtga ataaccattt caatcatctg
     4381 cgtgtgaacg gtcacctcaa aatgatagag cccttcctcc cctgtcaacg gaagaacctt
     4441 caaggaggaa taggactgct gttgatagga aaagttaaaa tgttctagct gatttaacag
     4501 ctctaacccc tcctcaaaat aggcttgtgg cagacgaaaa tgtcgtccaa aatgagtaag
     4561 aatatccgaa tctataccaa ctttctctgg taccaaggcc cagagaaaat caaggagagc
     4621 ctgacttggt tcatcaaaat tttcataagt aacttgctca taataatttt tacctatttg
     4681 atagtgaccg ttggctttca caatgcgcaa aaaagctccg atgtcccgca caatgtacga
     4741 acgtgtatct ggcaaacggg taattttcaa ggtccaatct atctgacgat catagggcaa
     4801 taagctccct tcaactgaca actgatactt aagccccagt tcaggttctg gccgcaaaat
     4861 ttcatctaaa aagagaccgc caaaataagt ccgacggacg gtttccttat gttgttcgct
     4921 atcttctttc aaagactgct tcatatcctt gcctgaggca tcatttttta aaaaatactc
     4981 cgtggcagct aggtgttgac agtagccctt actttgaaat aactggcaac tacactgtaa
     5041 atcgctatct gcatcgccgt aagtaaagcg ctcaccagca atatccagca ccatctttcc
     5101 attctcacta tgaagaacag tcagttttcc agcctcgtac aaatcaattc cttcttggcg
     5161 aatccgccct ggcatcatgc gacccattct aactccttta tccttcaacc aatcatcaac
     5221 tcttctgtaa aatatatcta aaatattatc ttttcattat agcatatttt caatttgaat
     5281 tgtttaaata ggtatcaaaa aaacaccagc aggtaaactg gtgcctctaa tgaatagcta
     5341 aataataaat cgttgcttgc cacattttca agattgtttt tccgcttttc caaagccaaa
     5401 atagggcaaa tagcaggaaa acaactgcca ctactacgtt aatcaagcct tttccaacca
     5461 agaaaaactt gaaaaagaag acagtcacac aagtgagcaa ggcaaggagt aagacatgaa
     5521 tcagaactcc caaccagccc agccaatagc gaattccaaa gggagggtgt ttcttttcat
     5581 cgaagtctgc tagaccagtc aaaaactcaa ctagcaactc accaaaaaat tccatactag
     5641 cctacctttc ttacctgtcg ataatatttg gttcgtcgaa tcatcatctt gatagcctta
     5701 aaggaaagta aggttagcat actagccaca aatagacaaa aaaggaatat cacaaccaat
     5761 ggctgtttat actgattata gaccataatt gaaccaccag taaaggcgat aaaataggat
     5821 gccaaagtca caaaattgag ccagatacaa gccactagcc ccagccaata acgaaatccg
     5881 aaaggcttat actgactgtc ttcataaaat acaagaaaaa atgatgaaaa agaaagcaat
     5941 atcaaaaaag aacgccaaat cggaaccgct accataccaa cacctccaag tccattctag
     6001 catatttacg aataggtgca aagaaaaaag aggtttccct ctttacttcc gtttccgtgc
     6061 aatcagatga atcggtgtcc cttcaaatac aaaggccttg cggatttgat tttccaagaa
     6121 acgcatatag gagaagtgca tgagctcttc ttcgttgaca aagaccacaa aggtcggtgg
     6181 tttggtcgca acctgagtcg catagaaaat cttgagacgt ttacccttgt cagttggtgt
     6241 cgggttaatg gcaatggcat ccatgataac atcgttgaga acagccgatg gaatacgggt
     6301 attctggctt tcactgatgg ccttaatcat ctcaggcaac ttgtgcaagc gttgcttggt
     6361 caaggctgat acaaagataa tcggtgcgta agacaagtat tggaactggt cgcggatatc
     6421 atcttcccat ttcttcatgg tgtggttgtc tttttccaac gtgtcccact tgttgaccac
     6481 gataatcatt cccttaccag cttcatgggc aaaacctgcg atgcgcttgt catactcacg
     6541 aataccttct tctgcattga tgaccatgag tataacatcc gagcgttcaa tggcacgcat
     6601 ggcacgcata acagagtatt tctccgtatt ttcatagacc ttaccagact tgcgcatccc
     6661 tgcggtatca atcatggtaa attcctgacc ttctgggtct gtaaagtgcg tatcaatggc
     6721 atcacgagtc gttccagcaa caggcgacgc aatcacgcgc tcttcaccca aaatagcgtt
     6781 aatcaaactt gattttccaa cgtttggacg accaatcaag ctgaacttga taatatctgg
     6841 attttcttct gcttcttgga ctggcagatt ttcaatgata gcgtccaaga catcccctgt
     6901 accgatacca tgcacagatg atactgggta gggatcccca agaccaagcg aatagaaatc
     6961 atagatgtca ttacgcattt cagggttatc gaccttgttg acaaccaaaa tgactggctt
     7021 attggtcttg taaaggatac gcgatacata ctcgtcagca tccgtcacac cttccttgcc
     7081 tgatacgaca aagacgataa cgtccgcttc atccatggca atctcagcct gatgcttgat
     7141 ttgctccatg aaaggtgcat ccacatcatc aataccgcct gtatcaatca aggaaaactt
     7201 acggttgagc cactcaccag tagcataaat acggtcgcgg gtcacacctt ccacgtcttc
     7261 tacgatagaa atacgttccc ccgcaatacg gttaaatagt gttgatttac caacgttggg
     7321 acggccaacg atggcgatag ttggtagagc catagctcct cctcttctag tttacaataa
     7381 tttattcttt tctaagatag actttgtttc tggttgttca gcctgaccaa actgggcaac
     7441 cattcgctca gaccaagttt ctgtctgacg ggcacctgca taggctgtct gaacttggtc
     7501 gtaggcttgg attacttcca cgccttgctc cacatattct tcctgaaaga caatggtttc
     7561 acttgccaaa cgtggtttaa caggatggtt ttgggctggt cgacccaagg caatacagaa
     7621 aattggatag gtataatctg gcaagttgaa cagctctgct attgccatgg ccttatggcg
     7681 aatcataccg ataaagacgc caccgtaacc taggctttca gctgctaaaa gggcattttg
     7741 ccctgctagg ctcgcatcaa ctgaagaaat caggagattc tctgttcctt tggcatcaaa
     7801 gtctgaacca tggagttgag ccgccttgct ggcacgatta tggtcgccca caaaaaccag
     7861 aatggcctga gcctgtaaaa tagctggctg gggcaccaaa tcatagagtg cctgtttttt
     7921 ctcctccaac tgcaccacaa tgatggaata agactggaaa ttcttccagc tagacgcagc
     7981 tcgcccagct gaaataatag cttgcaaatg ttccgcctca ataggctcct ccgtaaaacg
     8041 acggacggaa gtatgattca gcatcaagtc tatggtttca ttcatcggcg gttatttcct
     8101 ttcaaatgca aatcgcgagc cagatagcga atccgctcca taacccgttt ggcctgccag
     8161 gtctcatcac cagacttgcc agaggcgaaa tgacgctcca aatcatcaaa ggagaaattg
     8221 gaggtaaaaa aggtcggcag attttcctgc atgcggtatt gaagaatgac ttgcaggaca
     8281 tcgtcacgta cccaaggact atgttgctcc gctccgatgt catctagcac caagacctga
     8341 gccatcttga tttcatcaat tcgctccttg acagaaccat ctttgatggc attttttata
     8401 tcgacaacaa aggttggata atgaagcata gtggttgatt gaagatgggt cttggacaag
     8461 agattggcta aataagccat caaataactt tttccaatac cgaaattgcc atagatgtag
     8521 agcccttttg gtttttcctc aaatcgtttg acaaaatctg caatagccag catgacttcc
     8581 acacgatttt catcactctt atcaatatcc gccactgtta cattcttcaa actcgcaggc
     8641 atattgatga gctggatacg attcttgatg gcttccaaac gacggtattc gaccaattcc
     8701 tctgtctcaa gataggacac atccgcatag ccctcgttca tgactaaaac cggttgatag
     8761 ccttttgcaa tataggcttc atcctgcttg acaaagaggt cacgctgact gatatattcc
     8821 aaaaacttag aaatggagag ggtgatttcc tgctgggtca gaccttcttt tttgataaaa
     8881 gcagcgactt caggatcact cactatctcc tgatagagtt gctgataaga ttttggactt
     8941 ggattggttg tttgcgacaa cctgtcttga actgatttca tcagctacct cctttgtttt
     9001 ccatttcttc taattcacga taaagagccg ccagcttggc ttgaccttcc tgcgtttgtc
     9061 cttgctggac ttcttcctta ctccactctg gcacattggt tttctgtggc tggctcgact
     9121 tggtaacaac ttgacctgtc ttcaactctc ttaggtaaag aacagctgcc tctgcactga
     9181 caattccctt gtaggaaaaa tcattgccca gcttcatagc gtatttttca tttagattgg
     9241 ctgagtccac cttgttaaag gtatagagga ccaagacatt gatgacttcg tcaagcagac
     9301 ccaaattggc caaatccgtc aagcattttc gttctgttcc tgtcacagct gccttgcgtt
     9361 gctccttgat aaaggacagg aaggttaggc tagattttga tttcgcttca cgaacaatgg
     9421 cttgttcttg ggcagtgagg ttggcgtttt ctgttggcaa tgactgacgt gactgttgca
     9481 agcgtttggt cgagatggtc tgtccaatag ctgttgcttt agcctggcga taggtttcca
     9541 accaggtcca ccccgcctgc tctgctatgt aactaagcgc aataatatcc tcagcttcat
     9601 cctgaaaaag aagcttatct ttagccatta atgccttgaa ggcagaccag tcaaaatcat
     9661 gtttcggttc aaaaacaact ggagcctgcc catccatggt aaagacctga gaaaatgttt
     9721 ttgagatatt ctgttcttga ttgggttggt gaacaagcag attctccatg cttgactccc
     9781 caatcttcct tgccaacaag ttcttataca agggtttcgc tagaaaactt tttacggtca
     9841 gaggggcttg tagcgccaaa cctgttaatt catctgcacg atagagttct aggagcccca
     9901 tggcagtcag aacatccaga gccttctcca aacgattcat cccaaaatcc atgtgattga
     9961 gaatgacagt ccatttgtaa cgtccttgcc cttgatcggc aaaactataa aagtaataat
    10021 aaagcgctaa tgcatcaaaa ccgataatcg gctggtagca ttggctaaga ctgacaatat
    10081 caggtgtaaa cgggctgatt tttatatagg caaataaatc atttggtttc atcttttttt
    10141 cccggtttta ccttacttcc tttggaaatc atctgtttaa gcaaattttc tagctctcca
    10201 acatctttga aagaacgata aaccgatgca aaacgcacat aggtgatttc atccaattcg
    10261 accaattctt ccattaccaa attcccaatg acatcggatt ctatttcact atcaccttgt
    10321 gctcgaacct tctgttcaat ccgattcacc acttcatcaa tatcatcggt tgacacaggg
    10381 cgcttttgag cagaacgaat aatcccattg aaaatctttt cacgtgaaaa ctgctctcta
    10441 gttccgtctt ttttcacaac gactagagtt ttctcttcaa tccgttcata ggtggtaaaa
    10501 cgttgaccac attggtcgca ggaacgacga cgacggatga tattgccatc ttcagcctga
    10561 cgactatcaa tgacacttga tttcaaactc tgacattttg gacaacgcat actctttctc
    10621 ctacataaac tttatcactt cagtatagca taaaaatgac aaaaataaaa gaaagcgaga
    10681 attactcact ttctgccaat aattcacctt gcttcttcaa tcgactggca acccattcac
    10741 gaaccaagcg atagacaacc gcaaaaattg gggtaaagaa gaccatacca agtaggccaa
    10801 acaaattacc accaatcaag gctgctgcta gggtaaagag agtcggaaga ccaactgatt
    10861 gaccaactac gcgcgggtaa atcacattcc cttcaatcaa ctgaataatc tggaaaaggg
    10921 cgatagacca gagtgccaag agcggatttt gtaccgccac aaaaagagca ctaatcaaac
    10981 acgctgaaaa gggaccgata taaggtacaa atgataggac cccagccaaa ataccagcca
    11041 tgctggcata aggaattcct gagagcgaat aactaacaaa gacaagtgtc ccaatgatac
    11101 acgcctcaac aatctgactc atcaagaatc ggtcataagt atcaacaata acttctccaa
    11161 tatagttcac tactctgaca gccttctctg gcaaggtagc ctgcaagaac tttctcgtca
    11221 tcgcctgcaa gtgttccttg ctccctaaaa tcgctagagt gaagaagaaa gccattatca
    11281 acgtcatagt gttcgaaaaa atccccgtca cattggacac caagccagat aaaatcggtg
    11341 tgaccaaact tgaaataagt gttaaattct tcaactgatc caaaaagctg gcaatctggt
    11401 ctccgatttg tcccgacaaa agaccatttg attcaagaaa attagttagg gcatttaccg
    11461 attttggaat agctgtacta ctaaccgaaa ccagttctga aacagtcgtc accaatgtag
    11521 gaagaacaat caccaccagt cctgtcacaa ttaaagcaaa tccaattaat actccaacaa
    11581 ttgccaaaga ccgcttggat ttctttaaaa aagaaatttt ttcaaactga tcttctaatt
    11641 ttttcatggg aacattgagg atgaaggcaa aaatagctcc aataaaaagc gaattcatac
    11701 tacctaataa ttgttgaata gctccataaa tactagacca gttgagaaca gctaacaatg
    11761 tcgctccaga taagagtatc aatatgactt tttctttaaa tgatgtattc ataacttttc
    11821 cattcttact tatttgctat tattttatca cacgcttata gaaaaagaaa gagggaaagc
    11881 ttccctcctc tctactctaa atcaatcgcg catggcatat ccgacaccac gaactgtttt
    11941 tatatatgaa tcttgatgtg gcaaatccag tttaccacgt agatagcgaa tatatacatc
    12001 gacgacattg gtctcagaag ccgcttcata tttccaaaca cgctcaagaa gttgttctcg
    12061 actaacaggc tctgggctat tcattaaggt cgccaacaga tcatactctc ggcgggtcaa
    12121 attaatcaat tcatcacctc gagtcactgt tcgattttga aaatcaacct tcaaatcacg
    12181 ataggccgca tgcatgtgaa cctgtttaca gttattgtca ataaaatcac gaccacgaaa
    12241 aatcgcagag atttgctcca ctaaatcact gatgacaaag ggcttcacta cgtaggaaac
    12301 agcataagag aggacttctt ccccatattg actaacttct gtcggctcaa ctaccacaat
    12361 catgaccgtg gctggtttta tcgctaatag ttctgcagcc aattccttgc tggacatgtc
    12421 tgaaagctga aaactcatca gaatcaagtc aaaatccgtt tcatgtgcca aggacatagc
    12481 ctctttccct gtcgatgcat aatcaacaag atagtctttt ttctgcaatt ccatggaaac
    12541 aaaatgcgag agattgcgtt ctttaccagc aatcaaaatt ttcttagcca ttgtccatcc
    12601 ttttctattc tttcaaatgg tgtaggaatc gtattatgac tagaaagaag ggcgcttcca
    12661 cgcccatctt ttctattttg attcgctata ccagtcgtaa tggaagattc cttctttatc
    12721 tttacggtta taagtgtgag caccaaagta gtcacgttgt gcttgaatca agttcgctgg
    12781 caagttttca gcacggtagc tatcgaagta ggtaatagct gctgagaatg ttggtacagg
    12841 aactcctgct tgaactgcca aggcaacaac atcacgaact gcctgttgat acttagctgt
    12901 tacatcaagg aagtactcat ccaagagcaa gtttgccaag tcttcatcac gtccgtaggc
    12961 atctgtgatt ttttgcaaga agcgagcgcg gatgatacaa cctgcacgcc agatttttgc
    13021 gatttcacca aatggcaagt tccagttgtt ttcttttgat gctacacgca actgtgcaaa
    13081 accttgtgca taagacatga tttttgagaa gtacaatgct tgacggattt tttctaccaa
    13141 ttcagccttg tcgccttcgt atgcaaacgg agctggtttt ggaaggacct tgcttgctgc
    13201 tacacgctca tctttgtagg ttgagatata acgagcaaat acagattctg taatcaatga
    13261 caatggcaca cccaagtcaa gtgatgattg gcttgtccat ttaccagttc ccttgttacc
    13321 agccgcatcc aaaatgtagt caacgattgg tccatcttga ccttgatcgt ctttacgttt
    13381 caaaatatct gctgtgattt caatcaagta gctatccaat tcgcctttgt tccactcagt
    13441 aaagatgtca gccatttcat ccactgacaa accgagcaag tgttgcatga ggtcataaga
    13501 ctccgcaatc aattgcatgt cgccatactc gataccgttg tgtaccattt ttacgtagtg
    13561 accagctcca tctggaccga tataagtcac acatggtgct ccatcttctg gtgcttttgc
    13621 tgaaatttct tccaagacat ctgccaccaa ttcgtaagct tctttttgac caccaggcat
    13681 gatagatgga ccttcaaggg ctcctttttc accaccagat acacctgtac cgatgaagtt
    13741 aatacctgag tttgccaatt cttttgaacg acggatagtg tcttcgtaga aagtattacc
    13801 accatcgatc aagatgtcac cttcatccaa gtgtggcaag agcgcttgaa tggttgcatc
    13861 tgtaccagga ccagcttgaa ccataagcat gatgcgacgt ggtttttcga tagatgccac
    13921 aaagctttcc acatcgtaac ttggtaccaa gtttttacct gggttgcttg caacaacgtc
    13981 ttctgtttta tcagcagagc ggttgtaaat agctactgag tagccacgtg attcaacgtt
    14041 aagtgcaagg ttgcggccca taacggccat ccctacaaca ccaaaatttg ctttagtcat
    14101 ttgtttactc ctctaatttg tatctctttt attatacacc gaaagctgaa aattgacaag
    14161 aattttcaga taatttaact atcttgccaa tctgagttag tcctcatctc caaataaccc
    14221 ttgtaattgg gcaaaaggac tattggcctc ttttttctct tgagcttttt gttgaaaatc
    14281 ttcttcagtc attaaagccc aagcttgacc agatggtagt tcctgtccag cttcttcttc
    14341 aggtgtcaag actttgattg gtatagccag taaaatatta tctgctacac tctcatcaag
    14401 gacaatgtgg tcatcttcta ctaccagtac catatcctca tcaatcaaat cttgttcttt
    14461 aagaactgct tcattggcaa caaagagttc attgacgttt tggacctcat gcaaaacaac
    14521 tggttgcaga gaacgactgg atgccaaggt aatatcataa gtcatctgat agtccaagaa
    14581 aaagaaacct gattcaaaac ggatatttcc agtgacttcg actggcgaca agcctagaac
    14641 ttcaccattt cgagcttgca attcttcctg taaatccaag gttttatcaa aggagatgcc
    14701 atctagattt ttctgaatat cgtaaatatg aaacattgta ttcccctatt cagctagttc
    14761 tgtgatgtag ttatagactt cttgtccagc aactgcacca tttcctactg ccgttgcaat
    14821 ctgacgaagt tgattttgac gaatatcacc gatggcatag atgcctgatt gagtcgtctc
    14881 catcttttca ttagtgatga cccaaccagc ttcgtctgta attcctaggt ccgcaactgt
    14941 atcagtcatc ggatccagac cgacatagat aaagacacca ccgaaatcaa gttcactgac
    15001 ttcttcagtt ttcacatttt tgataaccac gctttgtaca cgtaagtcat cgcccttgat
    15061 ttcttcgact acgctatccc agataaagtt tattttttca ttggcaaagg cgcgatcttg
    15121 gatgactttt tgagcacgaa gttgatcacg gcggtgaaca attgtcacag actccgcaaa
    15181 ttgtgtcaag aagagagctt cttcgaccgc agaatctcca ccaccgacaa ccaagagttt
    15241 ttgtccacgg aagaaggcac cgtcacagac tgcacaatat gagacaccac ggctattgta
    15301 agtatcctca cctggaatac ctaacaaacg gtgttttgcc cccatggcta gaacgactgt
    15361 ctttgtctcc aaaacaccat cctcagtaat cactttctta atttgtcctt cttcctcaat
    15421 acggactagg gtgccaaaaa tatggtccac accgaatttt tccaagggtt caaacatttt
    15481 ttcagccaag gctggacctg aaatatggtc atagcctgga tagttttcaa tttccgcggt
    15541 attgttcatc tgaccaccat aaataccacg ttccaaaaga gctaccttta aattgctacg
    15601 ccctgcataa agagctgcag tcatccccgc aggacccgca ccaattacaa ctgtatcgta
    15661 catatacttt ttccttctac gctttaaaca ttaataagat tcccactact ccaaaggctg
    15721 caatgggaat tgtcatcaca ttaatcatca acaaatcaaa caagaaatct tgtcgttctt
    15781 gcaaggtttt atccacaccc tttgtcgcac gccagataaa ccagaccaga ctagaagtga
    15841 taatcaacaa ggaagctatt agcaatcctt gtaaataaaa acttagaatg ttttgtaaca
    15901 tctttttcct cgattacttt aaaaggtttg acgcttggct ttacgttctg cacgaccctt
    15961 tgcacgcgct tcaactcgct tggtcttgcg acgtttttca tcaacagccc attgaatttt
    16021 cttcttgtag cctggtttga cttttttctt tttcttcttg accaagccaa tcatttccaa
    16081 atctagtttt tcacgagatt tttcacggtt agcacggcgg tcacggtcgt aggtatcgac
    16141 aaattcgcca tttttcattt cttttggcaa gaatttgata ttgagttttt ctagctctcg
    16201 aatatctgca tcatcgcttg gctgataaag ggtaatggca atgcctgata aaccattacg
    16261 acctgtgcgc cccacacggt gaacaaagaa ggaaagatcc tgtggaatgg catcattgat
    16321 gacatgactg acgccctcaa tatcaatccc acgtgctgct aaatccgttg caacaatgta
    16381 ctgatagtcc aagttcttca cctggttcat catccgcttg cgctcacgtg gaggaatatc
    16441 cccatgaatc tttgcgacac gaagaccgtt cgcagtcaaa tagctatgca attcatctgc
    16501 acgtgtcttt gtattgacaa aaatcatggc caagtaaggt tgcatgagct tggttacttc
    16561 caagatttga gcattacggt catgcccctt ggttgaaatc agccagtttt caatggtatc
    16621 tgaaatgacc gtatgggtct tgatttgttc catgactgga ttggacaggt attttttcaa
    16681 aaacggttgg agtttctgcg gaatggtcgc tgaaaagacc ataaattgca agtcttttgg
    16741 caggctgcca gcaatcttat caactgtttc caaaaagccc atgtccaagg tcatatctgc
    16801 ctcatcaacc acaaaggttt tggctttatg gatagcaagg tcacctgatt tgaccaaatc
    16861 atagatacgc cctggtgtcc caacaacaat gtgaggctga ctagcttgaa gcttgtcaat
    16921 ttgacggttc ttatccgtac cgccaacata attggtcaca cgaacttcga tgtccgaatg
    16981 acttgccaac tggcgtgccg cttgataaat ctgagtagct aattcacgag atggggctgt
    17041 aataacagcc tgaacttggt ccaattcctc acttaatttt tggaaaatag ggatcaagaa
    17101 ggtatgggtc ttacccgaac ctgtttttga ttcccctatc aagtctcgcc ctgataaaac
    17161 aacaggaatc aatttctcct gaacttctgt cggctggaca aagttaattt ctttcaaagc
    17221 ctcctgaata taaggcttga gtttcatatc tgtaaatttc atagtttcct ctttagttgt
    17281 atttccctct attatagcac gatttaggtg gacaagcaaa aaggacggat acccgtccta
    17341 atcaactctc gcttgcttca gtaaattctg cctcaataat tccaagttcc ttctcttctt
    17401 ccaaacttgc tttaaaggcc tcagtgagtt ctaattcgcc atcaaaatca ccatttattt
    17461 ttttcacaaa tgtatctgcc aacatccctc ccatgggctg gaaggtaaaa taggtcaaac
    17521 ctcctgaaat cagaccaccc aaaataggaa ctgcattggc aatggtcttt tcaacagtct
    17581 ttttggtaat tttcacacca atcactgcgg ctaccttttt caccaaggga tggga
//
LOCUS       DASGCC010000032        17563 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.032, whole genome shotgun sequence.
ACCESSION   DASGCC010000032 DASGCC010000000
VERSION     DASGCC010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17563
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.032"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            148..1404
                     /locus_tag="U1404_000739"
     CDS             148..1404
                     /locus_tag="U1404_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5347712.1"
                     /translation="MKKKILATIMLSTVVLSNANYVAVISANDVDSQIAAKNQQISEL
                     TAQQAEAQQQVDAIQGQVDAIVSEQAKLTEENTRLEAESQTLAADIERLSADIVSRDG
                     ALKEQARSAQVDGSASSYINTILDSKSIIDAVSRVNAMREIVSANNRMLEQQKADKEA
                     IVEKQKANQEAITTLAANRQKLEDDAQVLQVRQAELEAAKLNLAVQKATAEDEKNSLL
                     VQKAAAEEAARQAAARQAEYQAQQAALAQQQVASVSAPVVSTPVETTVTETFAAPTQT
                     VSQSTPTVSTPTTSTSSGSGSSAAANNARYDASSYPVGECTWGVKSQLSWVGPYWGDA
                     KQWLASARAEGFSTGSTPQVGAIAVWTGGYYGHVAVVTAVQSSTSIQVVESNYMGRRY
                     IGNHRGGYFNPTTTSEGAVYYIYPPY"
     gene            1507..2475
                     /locus_tag="U1404_000740"
     CDS             1507..2475
                     /locus_tag="U1404_000740"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM5347713.1"
                     /translation="MAFTDLKLFALSSNQKLAEQVSKKIGIPLGKSSVRQFSDGEIQV
                     NIEESIRGTHVYILQSTSSPVNDNLMEILIMVDALKRASAESVNVVMPYYGYARQDRK
                     ARAREPITSKLVANMLQTAGVNRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERR
                     GMVGDGYVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGDIKDK
                     TCILIDDMIDTAGTICHAADALADAGATAVYASCTHPVLSGPAMDNISKSAIKKLVVL
                     DTIEIAEDRLIDKIEHISTAELLAEAIIRIHEKRPLSPLFEASRVK"
     gene            2562..3740
                     /locus_tag="U1404_000741"
     CDS             2562..3740
                     /locus_tag="U1404_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5347714.1"
                     /translation="MDLLNRFNKNLNRIEVSMIRQFDQSISDVPGILKLTLGEPDFTT
                     PDHVKEAAKAAIDANQSYYTGMAGLLELRQAAAEFVAEKYNLHYNPENEILSTIGATE
                     ALSASLVAILEAGDTVLLPAPAYPGYEPIVNMVGADIVEIDTTANDFVLTPEMLEEAI
                     IEQGDKLKAVILNYPANPTGVTYSREQIQAFADVLRNYPVFVLSDEVYAELTYTGQPH
                     TSIAEFLPEQTILIQGLSKSHAMTGWRIGLIMSQAPIIAQIIKSHQYLVTAASTAMQY
                     GAVEALKNGKDDALPMRAEYVKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQD
                     SFSFLQDFARKKAVAFIPGAAFGQYGEGYVRISYAASMEKIQTAMACLKEYLEENGTN
                     "
     gene            3727..4509
                     /gene="recO"
                     /locus_tag="U1404_000742"
     CDS             3727..4509
                     /gene="recO"
                     /locus_tag="U1404_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEM5347715.1"
                     /translation="MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSK
                     LVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKNINGDIFKLSYATYILALADAAL
                     QDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
                     PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKL
                     RFFIDQLYEEYVGIHLKSKKFIDDLSSWGQIMKPRTENEETE"
     gene            4506..5513
                     /gene="plsX"
                     /locus_tag="U1404_000743"
     CDS             4506..5513
                     /gene="plsX"
                     /locus_tag="U1404_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEM5347716.1"
                     /translation="MKRIAVDAMGGDHAPQAMVEGVNQALAAFPDIEIQLYGDEAKIK
                     QYLTATERVSIVHTTEKINSDDEPVKAIRRKKDASMVLATKAVKDGQVDAVLSAGNTG
                     ALLAAGVFVVGRIKNIDRPGLMSTLPTMDGKGFDMMDLGANAENTAHHLYQYGILGSF
                     YAEHVRGVKQPRVGLLNNGTEDTKGTPVHQETYKLLAEDKSINFIGNVEARELLNSVA
                     DVVVTDGFTGNAVLKTIEGTAKSIVGQLTGSIKNGGLRAKLGGLLVKPTLKKALGAMD
                     YKTAGGAVLLGLKAPVIKAHGSSDAQSIFYTIKQTRSILEAGIVEKSVAKFSVVEESH
                     D"
     gene            5506..5754
                     /locus_tag="U1404_000744"
     CDS             5506..5754
                     /locus_tag="U1404_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM5347717.1"
                     /translation="MTREQVYQRVVELIQDEKGEDFQVQPESTLADNIAADSVEIMEF
                     VLNLEDEFHVDVPDAAIEHFEVLSDIVDFIYEEAKKRS"
     gene            5872..6579
                     /locus_tag="U1404_000745"
     CDS             5872..6579
                     /locus_tag="U1404_000745"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEM5347718.1"
                     /translation="MKTDLLYSGKAKDIYATADSDQIVAVYKDQATAFNGGKKEQIVG
                     KGRLNNLISSLIFEKLNEAGVPTHFIKRLSDSEQLNKKVEIIPLEVVLRNVTAGSFSK
                     RFGVEEGITLPTPIVEFYYKKDELDDPFINDEHIAFLELASQDQIAYIKEETRRINEF
                     LKDLFAQIGLTLVDFKLEFGVDSSGQILLADEFSPDNCRLWDADGNHLDKDVFRRGLG
                     ELTEVYEVVLAKLQEVK"
     gene            6592..10311
                     /locus_tag="U1404_000746"
     CDS             6592..10311
                     /locus_tag="U1404_000746"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001042262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEM5347719.1"
                     /translation="MAKRIFVEKKADFQIKAEALRKELTHNLQLTSLTSVRLVQVYDV
                     FHLAEDLLEQAIKRIFTEQVTDKVLSDEELGLEGAVYFAIEALPGQFDQRAASSQEAL
                     LLLGSRQEVRVNTGQLYILNGNVSTEELSAIKNYLLNPVDSRFKDLDAPLVAQEFSVS
                     DATIPTLDFFASYGAEEFASYKREAGLAMEVEDLLFIQDYFKSIGRVPTETELKVLDT
                     YWSDHCRHTTFETELKSIDFSASKFHKQLQATYDKYLAMRTELGRTDKPQTLMDMATI
                     FGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGG
                     AATCIGGAIRDPLSGRSYVYQAMRISGAGDITQPLTATRPGKLPQQIISKTAAHGYSS
                     YGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKENVVREKPVAGDVVILLGGKTG
                     RDGIGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGDVTRLIKKSNDFGA
                     GGVCVAIGELADGLEIDLDKVPLKYAGLNGTEIAISESQERMSVVVRPEDVDAFIAAC
                     REENIHVVVVAKVTEKPNLVMTWNGQTIVDLERSFLDTNGVRVVVDAKVVDSSVNLPE
                     MRRTSADTLQEDLKALLSDLNHASQKGLQTIFDSSVGRSTVNHPLGGRHQLTPTESSV
                     QKLPVQHGVTTTASVMAQGYHPYLADWSPYHGAAYAVIEATARLVATGANWSKARFSY
                     QEYFQRMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEDLTVPPTLVAF
                     GVTTADSHKVLSPEFKAAGEHIYYLPGQALSEDIDFALMKSNFEAFEKWQSDYVITAA
                     SAVKYGGVLESLALMSFGNQVGARVELADLETSLTGQLGGFVFTSKEDIPDAVKIGQT
                     TADFTLLVNGVNLAGQDLQVAFEGKLEEVYPTEFEQATELQDVLAVTSSAVTKAKEAV
                     EVPVVYIPVFPGTNSEYDSAKAFEQAGAKVNLVPFVTLDAESIEQSVDTMVDNIDKAH
                     ILFFAGGFSAADEPDGSAKFIVTILRNAKVRSAIDCFIEKGGLIIGICNGFQALVKSG
                     LLPYGNFEEAGESSPTLFYNDANQHVAKMVETRIANVNSPWLAGVQVGDIHAIPVSHG
                     EGKFVVTDEEFATLRDNGQIFSQYVDFTGQPSMDSKYNPNGSSHAIEGITSRNGQIIG
                     KMGHSERYEDGLFQNIPGKKDQGLFVSAVRYFTGK"
     gene            10314..11768
                     /locus_tag="U1404_000747"
     CDS             10314..11768
                     /locus_tag="U1404_000747"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEM5347720.1"
                     /translation="MTYEVKSLNEECGVFGIWGHPQAAQVTYFGLHSLQHRGQEGAGI
                     LANDGGQLRRHRGTGLIAEVFKNPADLESLTGTAAIGHVRYATSGSASINNIQPFLFD
                     FADMQVGLAHNGNLTNAVSLKAELEKNGSIFSSSSDTEILMHLIRRSHNPDFMGKIKE
                     ALNTVKGGFAYLILLEDKLVAALDPNGFRPLSIGKMKNGAWVVASETCAFEVVGADWV
                     RDVEPGEIVVIDDSGIQYDSYTRDTQLAVCSMEYVYFARPDSVIHGVNVHTARKNMGR
                     RLAQEFQHEADIVVGVPNSSLSAAMGFAEESGLPNEMGLIKNQYTQRTFIQPTQELRE
                     QGVRMKLSAVSSVVKGKRVVMIDDSIVRGTTSRRIVQLLRDAGAKEVHVAIGSPELKY
                     PCFYGIDIQTRRELISANHTVDEVCEIIGADSLTYLSLEGMIEAIGIETDAPKGGLCV
                     AYFDGEFPTPLYDYEEEYLRSLEEKTSFYIENVK"
     gene            11824..12846
                     /locus_tag="U1404_000748"
     CDS             11824..12846
                     /locus_tag="U1404_000748"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEM5347721.1"
                     /translation="MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERLGVMGALGGFG
                     GMFDLTKLDVKEPVLVSGTDGVGTKLMLAIQYDKHDTIGQDCVAMCVNDIIAAGAEPL
                     YFLDYIATGKNEPAKLEQVVAGVAEGCVQAGCGLIGGETAEMPGMYGEDDYDLAGFAV
                     GIAEKYQIIDGSKVKEGDILLGLASSGIHSNGYSLVRRVFADVSGDALLPELNGRALK
                     DVLLEPTRIYVQQVLPLVKAGLVNGIAHITGGGFIENVPRMFADNLAAEIEEDKIPVL
                     PIFTALEKYGKIKHEEMFEIFNMGIGLVLAVSPDKVDSVCQLVDEEVYTIGRIIAKED
                     KSVVIK"
     gene            12843..13394
                     /gene="purN"
                     /locus_tag="U1404_000749"
     CDS             12843..13394
                     /gene="purN"
                     /locus_tag="U1404_000749"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000717489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEM5347722.1"
                     /translation="MKRIAVFASGNGSNFQVIAEQFKVAFVFSDRRNAYVLERAEKLG
                     VPTFAFELKEFSDKQTYEEAIIQLLDQHQIDLVVLAGYMKIVGPTLLAQYEGRIINIH
                     PAYLPEFPGAHGIEDAWNAGVAESGVTVHWVDSGVDTGQIIKQVRVPRLADDTLETFE
                     ARIHEAEYQLYPAVLEELGAVKK"
     gene            13404..14951
                     /gene="purH"
                     /locus_tag="U1404_000750"
     CDS             13404..14951
                     /gene="purH"
                     /locus_tag="U1404_000750"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006146083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEM5347723.1"
                     /translation="MTKRALISVSDKNGIVEFAQELTKFGWEIISTGGTKVALDQAGV
                     TTIAIDDVTGFPEMMDGRVKTLHPKIHGGLLARRDLDSHLQAANDHEIGLIDLVVVNL
                     YPFKETILRPDVTYDLAVENIDIGGPSMLRSAAKNHASVTVVVDPADYPTVLGEIAEQ
                     GETSYATRQRLAAKVFRHTAAYDALIADYFTKQVGEDKPEKLTITYDLNQPMRYGENP
                     QQNADFYQNALPTAYSIAAAKQLNGKELSFNNIRDADAAIRIIRDFKDRPTVVALKHM
                     NPCGIGQAETIEQAWDYAYEADPVSIFGGIVVLNREVDAATAEKMHPIFLEIIIAPGY
                     SAEALAILTNKKKNLRILELAFDAQDASEVEKEFTGVVGGLLVQDQDVVVESPVDWQV
                     VTERQPSEQEWAAMEFAWKSSKYVKSNGIIITNDKMTLGVGPGQTNRVASVRIAIEQA
                     KDRLEGAVLASDAFFPFADNVEEIAAAGIKAIIQPGGSVRDQDSIDMANKYGLTMVFT
                     GVRHFRH"
     gene            15016..15846
                     /locus_tag="U1404_000751"
     CDS             15016..15846
                     /locus_tag="U1404_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM5347724.1"
                     /translation="MTLKPFTKWTGGKRKLLTQLHEHLPFEYNRYFEPFVGGGALFFD
                     LAPENAVINDFNEELINTYLQIRDNPEALLDLLHIHQENNSKEYYLDVRSVDRDGRIE
                     TMSDVERAARILYMLRVDFNGLYRVNSKNQFNVPYGRYKNPKIVDSELILSVSRYLND
                     NNILIMQGDFVTAVEEADAGDFVYFDPPYVPITATSSFTSYTHEGFSDQDQRRLRDTF
                     IDLDRRGVNVMLSNSSSPVVEELYAGFNISRVDVSRTNGASNSSRGKIQEIIVRNYGE
                     "
     gene            15836..16651
                     /locus_tag="U1404_000752"
     CDS             15836..16651
                     /locus_tag="U1404_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000794288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM5347725.1"
                     /translation="MANNEYKYGGVLMNKPYYHKNKAILVHADTFEFLNKMKPESMDM
                     IFADPPYFLSNGGISNSGGQVVSVDKGDWDKVDSLEEKHEFNRKWIRLAKNVLKPNGT
                     IWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSCRYFTHSTETILWARKDD
                     KKARHYYNYELMKELNDGKQMKDVWVGGLTKKSEKWAGKHPTQKPEYLLERIILASTQ
                     EGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDYLKIARTRLDKEDDKKNFS"
     gene            16629..17555
                     /locus_tag="U1404_000753"
     CDS             16629..17555
                     /locus_tag="U1404_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II restriction endonuclease"
                     /protein_id="HEM5347726.1"
                     /translation="MTKRTFHSWFETFTDTVADWNYYVDFTKVFNNMNDLYLRTNLNI
                     LNTLVGSKQIREDFIAICDKYPDVLTVIPILLAIRLESKGRGKNRKPIALPIREYGDD
                     AIISYDFDFYSPNYAIEDYADLLENTGIFELLQSHLVKNLQDYVYGVEVGLDSNGRKN
                     RMGKIMEALVERVLQNAGLEEKTDYYKQIRTGEIESLFHIDLSSITNNGKNHKKFDFA
                     IHVNGQLYLTEVNFYSKSGSKPNETTRSYENLAEKLTEISNVHFVWITDGEGWQRSKS
                     NLEEAFERIPRLYNLHDIRNKNIKELLEMEMD"
BASE COUNT         4972 a         3329 c         4372 g         4890 t
ORIGIN      
        1 gtcttatttt tcgtgttaca accattattt gagcgtttat ttggaataac aaacaagaca
       61 tagaaatgta ataattgcgt aatatactta cgcgattttt ttgataaaat gagagagtca
      121 gaaagtatag aggagttatg ttcggatatg aagaaaaaaa tcttggctac aattatgtta
      181 agtacagtcg ttctatctaa tgctaattat gtagctgtga ttagtgcgaa tgatgtagat
      241 agtcagattg cagcaaaaaa tcaacagatt agtgagttga cagcacaaca agctgaagct
      301 caacaacaag ttgatgctat tcaaggacaa gttgatgcaa ttgttagtga acaggcgaaa
      361 ttaacagaag aaaatactcg tttggaagca gaatcgcaga cattggcggc agatattgag
      421 cgtttgtcag ctgatattgt gtcacgtgat ggtgctttaa aggagcaggc gcgtagtgct
      481 caagttgatg gttctgcttc aagttacatt aatacaattt tggattcaaa atcaatcatt
      541 gatgctgttt ctcgtgttaa tgcaatgcgt gagattgttt cagctaataa ccgtatgtta
      601 gaacaacaaa aggctgataa ggaagcaatt gttgaaaaac aaaaggcaaa tcaagaggca
      661 atcactactt tggcagctaa tcgccaaaaa ttggaagatg acgcccaagt attgcaagtg
      721 cgtcaggctg aattggaagc tgctaagtta aatttggctg tgcagaaagc tactgctgaa
      781 gatgagaaaa attcattgtt ggtgcaaaag gcagctgcag aggaagcggc tcgtcaagcg
      841 gcagctcgtc aagcggagta tcaagcacaa caggcagctc tagcacagca acaagtagcc
      901 tcagtatcag caccagtcgt gtcaacgccg gtagaaacta cagtgactga aacgtttgca
      961 gcccctactc agacagtatc acaatctaca ccaacggtaa gcacacctac aacgtctaca
     1021 tcatcaggtt caggtagttc agcggcagca aataatgcgc gttatgacgc ttcatcttac
     1081 ccagttggtg agtgtacttg gggagttaaa tctcaacttt catgggttgg tccttactgg
     1141 ggagatgcta aacagtggtt agcatcagca cgtgctgaag gttttagtac aggttctact
     1201 ccacaagtag gtgcgattgc tgtttggaca ggtggttatt atgggcacgt agctgttgtt
     1261 acggctgttc aatcttcaac aagtatccaa gttgttgaat caaactacat gggtcgtcgt
     1321 tatattggta accatcgtgg tggttatttc aatccaacaa cgacttctga gggagcagtt
     1381 tactacattt accctccata ttaagaaatt ttcaaataga gcgtgtggat ttgcgctcta
     1441 tttttgtttg aaaaatgaag gaaaaagggt taaaatagta aaggtagaaa tatataggag
     1501 gctgtcatgg cgtttactga cttaaaattg ttcgctcttt cgtcaaatca gaagttagct
     1561 gaacaggtgt cgaaaaaaat aggaattcct ctgggaaaat caagtgttcg tcaattttca
     1621 gatggtgaga ttcaggtaaa tattgaggaa tccattcgtg gaactcatgt gtatattctt
     1681 caatccacta gctcaccagt taatgataat ttaatggaaa ttttgattat ggtcgatgct
     1741 cttaaacgtg catctgctga atcagtaaac gtagtaatgc cttattatgg ttatgcacgc
     1801 caagaccgga aggctcgtgc acgggaacca attacatcaa aattggtggc taatatgttg
     1861 cagacagcgg gggtcaatcg tttgttgaca attgatttgc atgctgcgca gattcaggga
     1921 ttcttcgata ttcctgttga tcatttgatg ggtgctccat tgattgcgga ttattttgag
     1981 cgtcgtggta tggtaggtga tggctatgtt gttgtatccc ctgaccatgg tggtgtgaca
     2041 cgtgcccgta agttagcaca gttcttgaag acaccgattg ctattattga taaacgccgt
     2101 agtgttgata agatgaatac atcagaagtg atgaacatta ttggcgatat taaggataaa
     2161 acttgtatct tgattgatga tatgattgat actgcgggta ccatctgtca tgcagcggat
     2221 gctttggcag atgcaggggc aacagctgtt tatgcttcat gtacgcaccc agtattgtca
     2281 gggcctgcta tggataacat tagtaagtca gcaattaaga aattggttgt tcttgataca
     2341 attgaaattg cagaagatcg cttaatcgat aaaatcgaac atatttcaac ggcagaatta
     2401 ttagcggaag cgattattcg tattcatgaa aaacgtcctt tgtcaccttt gtttgaggca
     2461 agtcgtgtta aataggtatg agaagagtca aatgactctt cttttttaca tttattttca
     2521 aaatgtatta taatagtttt atatgttttt gaggtggcag aatggattta ttgaatcgtt
     2581 ttaataagaa tttgaatcgg attgaggttt cgatgattcg tcagtttgat cagtctattt
     2641 cggatgttcc cgggattttg aaactgacct tgggagagcc tgattttaca acgcctgatc
     2701 atgtaaaaga agcagctaag gctgctatcg atgctaacca gagttattat acaggtatgg
     2761 ctggtctttt ggagttgcgc caagctgcag ctgagtttgt ggctgaaaaa tataatttac
     2821 actacaatcc agaaaatgaa atcctctcta caatcggtgc gacagaagct ctgtcagcga
     2881 gtttagttgc tattttggag gctggggata cagttcttct gcctgcccct gcctatcctg
     2941 gttatgagcc gattgtcaat atggtgggag cagacatcgt tgaaatcgat acgacggcaa
     3001 atgattttgt attgacacct gagatgttgg aagaggcgat tattgagcag ggtgataagc
     3061 taaaagctgt cattctcaac tatcctgcca atccaacagg tgtgacctac tcacgtgagc
     3121 agattcaggc ttttgcggat gtcttgcgta actatcctgt ctttgtccta tcagatgagg
     3181 tctatgcgga gttgacttac actggtcagc ctcatacttc gattgcggag tttttgccag
     3241 aacagaccat tttgattcag ggattgtcca agtcccatgc tatgacaggt tggcggattg
     3301 gcttgattat gagtcaggct cccatcatcg ctcaaattat caagagccat cagtatcttg
     3361 tgactgcagc gtcaactgct atgcagtatg gtgcggttga ggccttgaaa aatggtaagg
     3421 atgacgctct tccgatgcgg gcggagtacg tcaagcgtag ggattacatc atcgagaaga
     3481 tgacggactt gggctttaaa attatcaagc ctgatggagc attttacatc tttgcaaaaa
     3541 ttcctgcggg ttacaatcaa gattccttta gcttcttgca agactttgcg agaaagaaag
     3601 cggtggcctt tattccaggc gcagccttcg gtcagtatgg agaaggctat gtgcgaattt
     3661 cctacgcagc aagtatggag aagattcaaa cagccatggc ttgtttgaag gaatatctag
     3721 aagaaaatgg aacgaattga aaccagggga ttagtcctat ataatcggaa ttttcgagaa
     3781 gatgacaagc tggtcaagat ttttacagag aaggctggca agcgaatgtt tttcgtgaaa
     3841 catgcctcta aatccaagct ggtagcttct atccagcctt tgacctatgc ggattttatc
     3901 gttaaaatca atgatgatgg gctgtcttat atcgaagatt ttcatcaggt acagcccttt
     3961 aagaatatta acggtgatat tttcaagctt agctatgcta cctatatctt ggccttggcc
     4021 gatgcggcct tgcaggacaa ggtctatgac ccagctctct ttgctttttt ggtcaagacc
     4081 ttggacttga tggagtcagg tttggactac gaagttctga ccaatatctt tgaaattcag
     4141 ctcttgggtc gatttgggat cagtctgaat tttcacgagt gtgctttttg tcatcgggtt
     4201 ggcttgcctt ttgactattc ctacaagtac agcggtgtct tgtgtccgca acactatcaa
     4261 caagatgagc gacgggctta tctggatcca aatgttccct atctacttga tcaatttcag
     4321 gctatttcct ttgatgagct ggaaaccatt tccatcaagc ctgagatgaa gcgaaaatta
     4381 cggtttttta ttgaccagct gtacgaggaa tatgtgggga ttcacttgaa atccaagaaa
     4441 tttatagatg atttgtcttc ttgggggcag attatgaaac caagaacaga aaatgaggaa
     4501 acagaatgaa acgtattgca gtagatgcta tgggtggaga ccacgcccct caggcaatgg
     4561 tagaaggtgt caatcaagcc ttggctgcct ttccagacat tgaaattcaa ctttatggtg
     4621 atgaggctaa aatcaagcag tatttgacag cgacagagcg tgtcagcatc gtccatacga
     4681 cggagaaaat caattcagat gatgagcctg tcaaggcgat tcgtcgtaag aaagatgctt
     4741 cgatggtcct agcgaccaag gctgtcaagg atggtcaggt agatgcggtc ttgtcagctg
     4801 gaaatacagg tgctcttttg gcggcaggcg tctttgtcgt cggtcgcatc aagaacatcg
     4861 accgtcctgg tcttatgtct accttgccga ctatggacgg taagggattt gatatgatgg
     4921 atttgggggc aaatgctgaa aatacagctc atcacctcta tcagtatggt attcttggct
     4981 cattttacgc ggagcacgtg cgtggtgtca aacaacctcg tgtgggactt ttgaacaacg
     5041 gtacggaaga taccaagggc acgccagttc accaagaaac ctataaactc ttggcggaag
     5101 acaagtcaat caactttatc ggtaatgtgg aggcgcgtga gttgctcaac agtgtggcag
     5161 atgtggtcgt gacggatggt ttcacgggaa acgctgtgct gaaaaccatt gagggaactg
     5221 caaaatccat cgttggtcag ttgactggct caatcaagaa tggcggtctg cgtgctaaat
     5281 tgggaggctt gttggtcaaa ccaaccttga aaaaggcctt gggggctatg gactataaaa
     5341 ctgcaggtgg tgctgtcttg cttggtctga aagcacctgt catcaaggcg cacggatcca
     5401 gcgatgccca gtcgattttc tatacgatta agcagacgcg ttcgattttg gaggctggca
     5461 ttgttgaaaa atcagtggcc aaattttcag tagtggagga gagtcatgac tagagagcag
     5521 gtctatcagc gggttgttga attaattcag gatgaaaagg gagaagattt tcaagttcaa
     5581 cctgaatcta ctttggcaga taatattgca gcagattcag tagaaatcat ggaatttgtt
     5641 cttaatttgg aggatgaatt tcatgtagat gttccagatg ctgctattga gcattttgag
     5701 gtcctatctg atattgttga ttttatttat gaagaagcaa agaaacgttc gtagtttacg
     5761 ggcgtttttc tttgtttttt cctaaaaaac cgtaaatttg ttgtgaatgc gaatattgtg
     5821 tgttagaata aacgaaaaga ctagaatatt ttacgaaagg cgaacattct catgaaaaca
     5881 gaccttctct attcaggaaa agccaaagac atctacgcta cggctgatag cgaccagatt
     5941 gttgcggttt ataaggatca ggcaacggct tttaatggtg gtaagaaaga acagattgtg
     6001 ggcaagggcc ggctcaataa tctgatttca tctttgattt ttgaaaaatt gaatgaagct
     6061 ggtgtcccaa cgcattttat caagcgtttg tcggattcgg agcagttgaa taagaaggtg
     6121 gagattattc ctcttgaggt tgttttgcga aatgtgacag ctgggtcttt ctcaaaacgc
     6181 ttcggtgtgg aagaagggat aaccttacct actcctatcg tggaatttta ctataaaaaa
     6241 gatgagttgg acgatccttt tatcaacgat gaacacattg cctttctaga actggctagt
     6301 caggaccaaa tcgcctatat caaggaagaa acaagacgaa tcaatgaatt cttgaaggac
     6361 ttgtttgctc agattgggct gactttggtg gacttcaagc tagaatttgg ggttgactcg
     6421 tctggtcaga ttttattggc ggatgagttt tcgcctgata attgtcgttt gtgggatgcg
     6481 gatggcaacc atctggacaa ggatgttttc cgtcgggggc tcggggagtt gaccgaggtt
     6541 tacgaggtcg tattggcaaa gttacaagaa gtgaaataag gattggaaaa tatggcaaag
     6601 cggatttttg ttgagaagaa ggcggatttt cagattaagg cggaggctct tcgcaaggag
     6661 ttgacccata atttgcagct gacaagtttg acgagtgtac gtctggtgca ggtttatgat
     6721 gtctttcatt tggcggagga cttgctggag caagctatta agcgtatctt taccgagcag
     6781 gtgacggaca aggttttgtc ggatgaagaa ttaggtctgg aaggtgcggt ttattttgct
     6841 attgaggctt tacctggtca gtttgaccag cgggctgcaa gcagtcaaga ggcccttctc
     6901 ttattgggca gtcgtcagga ggtgcgtgtc aatacaggtc agctctatat cttgaacgga
     6961 aatgtcagca cagaagaatt atctgccatc aagaattatt tgctcaatcc tgtggattcg
     7021 cgtttcaagg atttggatgc tcctttggtg gctcaagagt tttcggtttc ggatgcgacc
     7081 attccgacct tggacttttt tgcaagctat ggggcagagg aatttgcgtc ttacaagcgt
     7141 gaggctggtt tggctatgga agtggaagac ctgctcttta ttcaggatta tttcaagtca
     7201 attggtcgag tgccaactga gacagaactc aaggtcttag atacttactg gagtgaccac
     7261 tgccgtcata cgacttttga aacggaactc aagtctattg acttttcagc ttcaaaattc
     7321 cacaagcaat tgcaggcgac ttatgacaag tatttggcta tgcggacaga attaggtcgg
     7381 acagataaac cgcagacttt gatggatatg gcgacgattt ttggccgtta tgagcgggcc
     7441 aatggtcgtc tggatgatat ggaagtgtcg gacgaaatca atgcctgctc ggtggaaatt
     7501 gaagtggatg tggatggcgt gaaagagcca tggctcctta tgttcaagaa tgaaacccat
     7561 aaccacccta cagaaatcga gccttttggt ggtgccgcaa cctgtatcgg tggagccatt
     7621 cgtgatcctt tgtcaggacg ttcctatgtc tatcaggcca tgcgaatttc aggtgcgggc
     7681 gatatcaccc agcctttgac ggcgactcgc ccagggaaat tgccacaaca aatcatttct
     7741 aaaacagcgg cacatggtta ttcttcatac ggaaaccaaa tcggtttggc aaccacttat
     7801 gtgcgtgaat atttccaccc aggctttgtc gctaaacgca tggaacttgg tgccgtagtc
     7861 ggtgcagctc caaaggaaaa tgtggttcgt gaaaaaccag ttgcaggcga tgtggtcatt
     7921 ttgttgggtg gcaaaacagg ccgtgacggt atcggtgggg caacaggctc atctaaggtg
     7981 cagacagttg agtctgtcga aacggctggt gcggaagtcc aaaaaggaaa tgctattgaa
     8041 gaacgtaaaa tccaacgctt gttccgcaat ggtgacgtga ctcgcttgat taaaaaatcc
     8101 aatgacttcg gtgctggtgg tgtctgcgtt gccattggag aactggcaga cggtcttgaa
     8161 attgatttgg ataaggttcc gctcaagtat gcgggcttga atggtacgga gattgccatt
     8221 tccgaatcac aggagcggat gagtgtggtg gttcgtccag aagacgtaga tgcctttatc
     8281 gcagcctgcc gtgaggaaaa tatccatgta gttgtcgtag ctaaagtgac tgaaaaacca
     8341 aacctagtta tgacttggaa tggacaaact attgttgatt tggaacgttc cttccttgat
     8401 accaacggtg tgcgtgtagt cgttgatgcc aaggtggttg acagctctgt caacttgcca
     8461 gaaatgcgta gaacatcagc tgataccctg caagaagact tgaaagcact gttgtcagac
     8521 ctcaaccatg ctagtcaaaa aggattacag acgattttcg actcatctgt tggtcgttca
     8581 accgtcaacc acccactcgg aggtcgtcac caattgacac cgacagaaag ttcggtgcaa
     8641 aagttgcctg tccaacacgg tgtgacgaca acggcatccg tcatggctca ggggtatcat
     8701 ccctatctgg cagactggtc accttaccac ggtgctgcct atgcggtcat cgaagcgacg
     8761 gctcgcttgg tggcaacagg tgctaactgg tccaaggctc gcttctccta tcaggagtat
     8821 ttccagcgaa tggacaaaca ggcagagcgt tttggtcagc cagtagcagc tcttctgggc
     8881 tctatcgagg ctcagatcca gcttggtttg ccgtctatcg ggggcaagga ttccatgtct
     8941 ggtacctttg aggacttgac agttccgcct accttggtgg cctttggtgt gacaacagca
     9001 gacagccaca aggttctctc acctgagttc aaggcggctg gcgagcacat ctattaccta
     9061 ccaggccaag ccttgtcaga agatattgat tttgctttga tgaagtctaa ttttgaagct
     9121 tttgaaaaat ggcagagcga ttatgtgatt acggctgcta gtgcagtcaa gtatggagga
     9181 gttctagaaa gtctagccct tatgtccttt ggtaaccaag tcggagcaag agttgagctt
     9241 gcagaccttg aaactagcct gacaggccag ctcggaggat ttgtcttcac atccaaagaa
     9301 gacattccag atgctgtgaa aatcggtcaa accaccgctg actttacact ccttgtcaac
     9361 ggtgtcaacc ttgctggaca ggacttgcag gtagcctttg agggtaaact agaagaagtt
     9421 tacccgacag aatttgaaca ggcgacggag ttgcaggatg ttctggcagt cacaagttca
     9481 gcggttacaa aagcaaaaga agccgttgaa gtacctgtgg tttacattcc agtcttccca
     9541 ggtaccaact cagaatatga ttctgccaag gcctttgaac aggctggtgc aaaagtcaat
     9601 ctggtgccat ttgtgacttt ggatgcggaa agtattgaac agtctgttga caccatggtt
     9661 gacaatattg acaaggcaca tattcttttc tttgcaggtg gattctccgc tgcggatgaa
     9721 ccagatgggt ctgctaagtt tatcgtgact atcttacgaa acgccaaggt ccgctctgct
     9781 attgactgtt tcatcgaaaa aggtggcctc atcatcggta tatgcaatgg tttccaggcc
     9841 cttgtcaaat cgggcttgtt gccgtatgga aactttgagg aggcaggtga aagcagtccg
     9901 accctcttct acaacgatgc caatcagcac gttgccaaaa tggtagagac gcggattgcc
     9961 aatgtcaact ctccgtggtt ggcaggtgtt caagtcggcg atattcacgc tatcccagtt
    10021 tcccacggtg aaggaaaatt tgtagtgacg gacgaggaat ttgctacttt gcgtgataat
    10081 gggcaaatct tcagccaata cgttgacttt accggtcagc caagcatgga ttctaagtac
    10141 aatccaaatg gatccagcca tgccattgaa ggtattacta gccgcaacgg tcagattatc
    10201 gggaaaatgg ggcattcgga gcgatacgag gacggtcttt tccaaaacat tccaggcaag
    10261 aaagaccaag ggctctttgt ttcagcggtt cgctatttta caggaaaata aatatgacat
    10321 acgaagttaa atcactcaat gaagaatgcg gtgttttcgg catttgggga catccgcagg
    10381 ctgctcaggt gacctatttt ggtctccata gtttgcagca ccgtggacaa gaaggagcag
    10441 ggattttagc aaatgatggc ggacaattgc gtcgccatcg cggaacaggc ctgattgcag
    10501 aagtcttcaa aaatccagca gatttagaat ccttgacagg aacggctgct attggtcatg
    10561 tccgttatgc aacttctggc tctgcttcta tcaataatat ccagcccttc ttatttgatt
    10621 ttgcagacat gcaggtgggt ttggcacaca atgggaattt gaccaacgcg gtcagtttga
    10681 aggctgaact tgaaaaaaat ggttccattt tctcttcttc ttctgacact gagattctca
    10741 tgcacttgat tcgccgcagt cacaatccag actttatggg aaaaatcaag gaagccctca
    10801 atactgttaa agggggcttt gcctacctga tcttgttgga agacaaattg gttgctgcct
    10861 tggaccctaa cggtttccgt ccactttcaa taggcaaaat gaaaaatggt gcctgggtag
    10921 ttgccagcga aacttgtgct tttgaagtag tgggggctga ctgggtgcga gatgtggagc
    10981 ctggtgaaat tgtcgtcatt gatgattcag gaattcaata tgatagctat acaagagata
    11041 cgcaactggc tgtttgctct atggagtatg tctattttgc tcgcccagat tcggtaattc
    11101 acggggtcaa tgtccacacg gctcgtaaaa atatgggtcg tcgtttggcc caggaatttc
    11161 aacatgaagc agatatcgtg gttggtgtgc caaactcctc cctatctgcg gctatgggat
    11221 ttgcagagga atctggtttg ccaaatgaaa tggggctgat taaaaaccaa tacacccagc
    11281 ggacctttat tcaaccaacc caggaattgc gggagcaggg tgtgcgcatg aagttgtcag
    11341 ccgtttcaag tgttgtcaaa ggcaagcgtg tggtcatgat tgacgactct attgttcgcg
    11401 gtacaactag ccgccgcatt gtccagcttc ttcgtgatgc aggggcaaaa gaagtccatg
    11461 tggctatcgg cagcccagaa ctcaagtacc cgtgtttcta tggtattgat attcagaccc
    11521 gtagggagct gatttcagcc aaccataccg ttgatgaagt ctgtgagatt atcggggcag
    11581 acagtctgac ctacctttct cttgagggga tgattgaagc catcggcatc gaaaccgatg
    11641 cgccaaaagg cgggctctgt gtagcctact ttgacggaga atttccaacg cctctctatg
    11701 actatgagga agaatacctt cgtagcctag aagagaaaac gagtttctac attgaaaatg
    11761 tcaagtaaag acagaggtgt caacgttact tgacagacct gtaaactgtt gaaaggaatc
    11821 aaaatgacaa ataaaaatgc ctacgcccaa tcgggcgttg acgtcgaagc gggatatgaa
    11881 gttgtcgaac gcatcaagaa gcatgtagct cggacagaac gcttgggtgt gatgggagcc
    11941 ctcggtggtt ttggcgggat gtttgatcta accaaactgg atgtcaaaga gccagtcttg
    12001 gtatctggga cagacggtgt gggcaccaag ctcatgctgg ctatccagta cgacaagcat
    12061 gacaccattg gtcaagattg cgtggctatg tgtgtcaacg acattatcgc agcaggtgca
    12121 gagccgcttt acttccttga ctacattgcg actggaaaaa atgagccagc caagctggag
    12181 caagtagtag ccggtgttgc agaaggctgt gtccaagctg gttgcggatt gattggcggt
    12241 gaaacggctg aaatgcctgg tatgtacggc gaggatgact atgacctggc tggctttgct
    12301 gtcggtattg cggagaagta tcagattatc gacggtagca aggtcaagga gggtgacatt
    12361 ctcctcggcc tagcttccag cggtatccac tccaacggat attccctagt ccgtcgtgtt
    12421 tttgcagatg tttctgggga cgctctgttg ccagagctca atggcagagc tcttaaggat
    12481 gtcctattag agccgacacg tatctatgtc cagcaggtgt tgcctctggt aaaagcaggt
    12541 ctggtcaacg gcattgccca tatcacaggc ggtggattta tcgaaaatgt gcctcgtatg
    12601 tttgcggaca accttgcagc tgaaattgaa gaagataaga ttccagtcct cccaatcttt
    12661 acggcccttg aaaaatacgg aaagatcaag catgaagaaa tgtttgaaat cttcaatatg
    12721 ggtatcggat tggtcctggc agtcagtcca gacaaggttg acagtgtctg tcaactagtt
    12781 gacgaggaag tttacaccat tggtcgcatc atcgccaagg aagataagag tgtggtcatc
    12841 aaatgaaacg aatagcagtg tttgcatcag gcaacggctc caatttccaa gtcatcgcag
    12901 aacagtttaa agtagctttt gtcttttcag accgcagaaa tgcctatgtc ttggaacgag
    12961 ctgaaaaact aggtgtacca acctttgctt ttgaactaaa agagttttca gataagcaga
    13021 cctacgaaga agccattatc caactattag accagcacca gattgacttg gtggtcttgg
    13081 caggctatat gaaaattgtg ggtccgacct tgttagctca atatgaaggt cgtatcatca
    13141 atatccaccc ggcttatttg cctgaatttc caggagctca cgggattgaa gacgcttgga
    13201 atgcaggtgt ggcagaaagt ggtgtgacag ttcactgggt tgacagcggt gttgacacag
    13261 gacaaatcat caaacaagtc cgagtgcccc gactggccga tgataccctg gaaacctttg
    13321 aagccagaat acatgaagcg gagtaccaac tctatccagc ggttttggag gagttggggg
    13381 cagtgaaaaa ataaggagaa atcatgacaa aacgtgcgtt aattagcgta tcagataaaa
    13441 atggtattgt agaatttgcc caagaattga ccaagtttgg ttgggaaatt atctcgaccg
    13501 gtggtaccaa ggttgccttg gatcaggctg gtgtaactac catcgccatt gacgatgtga
    13561 ctggttttcc tgagatgatg gacggccgtg ttaagacgct tcatccgaaa atacacggtg
    13621 gtttgttagc acgtcgggat ttggacagcc acctgcaagc agctaacgac catgaaatag
    13681 gcttgattga cttggtagtg gttaaccttt accccttcaa agagactatt ttacgtccag
    13741 atgtgaccta tgatttggcg gtggagaaca tcgacatcgg cggaccgtcc atgcttcgtt
    13801 ctgcagccaa aaaccacgcc agcgtgaccg ttgtggtgga tccggcagat tatccgacgg
    13861 ttttagggga aattgcagag cagggggaaa cgagctatgc aacacgtcag cgattggctg
    13921 caaaggtatt ccgtcatacc gcagcttatg atgccctaat agcagattat tttaccaagc
    13981 aagtaggcga agataagcct gaaaaattaa ccattactta tgacctcaat cagcctatgc
    14041 gttacggtga aaatccccag caaaatgcgg atttctacca aaacgccctt ccgacagcct
    14101 attctattgc agctgctaag cagttaaatg gtaaggagtt gtctttcaac aacattcgtg
    14161 atgcggatgc ggccattcgg attatccgtg attttaagga ccgtccaact gttgtggctc
    14221 tcaaacacat gaacccttgt ggtatcgggc aggcagaaac cattgaacag gcttgggatt
    14281 atgcttatga ggctgaccca gtatcgattt tcggaggcat cgtcgtgctg aacagggaag
    14341 tggatgctgc gacggctgaa aagatgcacc cgattttctt agaaatcatc atcgcaccgg
    14401 gctactcggc agaagcgcta gctattttga ccaataaaaa gaaaaatctt cggattttgg
    14461 agttggcctt tgacgcacag gatgcaagcg aagtggaaaa agagttcaca ggcgttgtcg
    14521 gcggactctt ggtgcaggat caggacgtgg tggtggaaag cccagtggac tggcaggtgg
    14581 tgaccgagcg tcaaccgtcc gagcaagagt gggcagccat ggagttcgct tggaagtcct
    14641 ctaaatatgt caagtccaac ggcatcatca tcaccaatga caagatgact ttgggcgtgg
    14701 ggccggggca aaccaaccgt gtagcgtccg tccgtatcgc tatcgagcaa gccaaggacc
    14761 gtttggaggg agccgttttg gcgtcggacg ccttcttccc atttgctgat aacgtggaag
    14821 aaattgcagc tgcaggtatc aaggctatca tccagccagg tggttctgtc cgtgaccaag
    14881 actccattga catggccaac aagtacggct tgaccatggt ctttacagga gtcagacatt
    14941 ttagacattg agaattttgg ataagtatag caccccagct ggagaagttg gggtggattt
    15001 tggtataata gttccatgac tttaaaacct tttacgaaat ggacaggtgg gaagcggaag
    15061 ctattaactc agctacatga acatctacca tttgaataca atagatattt tgaaccgttt
    15121 gttggaggag gggcattatt ctttgattta gctcccgaaa atgccgttat aaatgatttt
    15181 aatgaggaat tgataaatac ttatttacag atacgggata atccagaagc attgcttgat
    15241 ttattacata tccatcaaga gaacaattcc aaggaatatt atttggatgt tcgttcggtt
    15301 gacagagatg gtagaataga aactatgtcc gatgtggagc gagcagcacg catactatat
    15361 atgctacgag tagattttaa tggtctatat agggtgaact ctaaaaatca gtttaatgtc
    15421 ccttacggca ggtataaaaa tccaaagata gtagactcgg aacttattct aagtgtatca
    15481 agatacttaa atgataacaa tattttaatt atgcaaggtg attttgttac ggcagttgaa
    15541 gaagctgatg cgggagattt tgtatacttt gatcctccgt atgttcctat aacggctact
    15601 agctctttta cttcttatac gcatgaaggt ttttctgatc aggatcagcg tcgattaaga
    15661 gatactttca tagatttaga ccgaagagga gttaatgtaa tgctttctaa ttcttcaagc
    15721 ccagtagttg aagaattgta cgctggtttt aatatttccc gagtagatgt atcgagaacg
    15781 aatggagcaa gtaattccag tcgtggaaaa attcaagaaa ttattgtaag aaattatggc
    15841 gaataacgaa tataagtatg gaggggtctt aatgaacaaa ccatactatc ataaaaacaa
    15901 ggctattttg gtacacgcag atacatttga atttttgaat aaaatgaaac cagagagcat
    15961 ggatatgatt tttgcagatc ctccatattt tttaagtaat ggaggaattt ctaactctgg
    16021 aggtcaagtt gtttctgtag ataaggggga ttgggataaa gttgattctt tagaagaaaa
    16081 acatgaattt aataggaaat ggattcgctt agccaaaaat gtgttgaaac caaatgggac
    16141 catttggatt tcagggagct ttcacaatat ttattcagtg ggtatggcct tagaacaaga
    16201 aggttttaaa atactaaata atattacttg gcagaagaca aatcctgcac caaatctttc
    16261 ctgtcgttac tttactcatt caacggaaac tattttatgg gctcgaaaag atgataaaaa
    16321 agctcgtcat tattataatt acgaacttat gaaagaactc aatgatggca aacaaatgaa
    16381 agatgtttgg gttggaggac taacaaaaaa atctgaaaaa tgggcaggta agcatccgac
    16441 tcagaaacca gaatatctct tagaacgtat tattttagct tcaactcaag aaggagatta
    16501 catacttgat ccatttgtag gaagcgggac gacaggagtg gttgccaaac gtttgggaag
    16561 aaaatttatt gggattgatg ctgaacggga ttatttaaaa atcgcgagaa ctagattgga
    16621 taaggaagat gacaaaaaga acttttcata gttggtttga aacttttaca gatacggttg
    16681 ctgattggaa ctactatgtt gactttacaa aagtttttaa taatatgaat gacctgtatt
    16741 tgagaactaa tttgaatatc ttgaatacgt tggtagggag taaacaaatt cgagaagatt
    16801 ttatcgcaat atgtgacaaa tatccagatg tgttaactgt cataccaatt cttttggcta
    16861 tacgtttgga atctaaaggc cgaggaaaaa atcgtaaacc aattgcttta cctattcgcg
    16921 agtatgggga cgatgctata ataagctacg attttgattt ttattctcct aactatgcta
    16981 tagaggatta tgccgattta ctagagaata caggtatttt tgaactactg caatcacatc
    17041 tagttaaaaa cttacaggac tatgtttacg gtgtagaagt cgggttagat tcaaatggtc
    17101 gtaaaaatag aatgggtaag ataatggaag ctttggttga aagagtactt cagaatgcag
    17161 gactagaaga aaaaacggac tactataaac aaatacgaac tggggaaatt gaatcactat
    17221 ttcatattga tctaagttct ataacgaata atggtaaaaa tcataagaaa ttcgattttg
    17281 caattcacgt aaatggtcaa ttgtatttaa cggaagtaaa tttctattct aaatcagggt
    17341 caaaaccaaa tgaaaccaca cgttcatatg aaaatttagc agaaaaactt actgaaattt
    17401 cgaatgttca ttttgtttgg ataacagatg gtgaaggttg gcaaaggtct aaatctaatt
    17461 tagaggaggc atttgaaaga ataccaagat tgtacaatct ccatgatatt cggaataaaa
    17521 atattaaaga gttattagaa atggagatgg actaatgaat ttg
//
LOCUS       DASGCC010000033        17380 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.033, whole genome shotgun sequence.
ACCESSION   DASGCC010000033 DASGCC010000000
VERSION     DASGCC010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17380
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.033"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(1..558)
                     /locus_tag="U1404_000754"
     CDS             complement(1..558)
                     /locus_tag="U1404_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5347727.1"
                     /translation="MTNTRKMTIIAILSAVSFLLMYLKFPLIPTASFLEVDFSLVPIL
                     FGLLVLDMKSSFAILLVRTFLKLILNNQGPSTIIGLPMNIAAMSVFILAVAYFWKNEQ
                     TLKNYLKAAAVATIGSTAVMLVLNYVYAVPVYAAFANFDIKEILGLTNYLLMMVLPFN
                     LLQGIVLSAIFYICYKAAQPILKKV"
     regulatory      complement(618..832)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(882..1427)
                     /locus_tag="U1404_000755"
     CDS             complement(882..1427)
                     /locus_tag="U1404_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEM5347728.1"
                     /translation="MNIETLEYIEETAKNHIVLFEPQIPQNTGNIARTCAATNSPLHI
                     IKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNLAEFMDYASKQGRVHLVSKFADKTYSD
                     EDYNDGNIHYFLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEA
                     LRQQQFAGLDLVHTYDGDKLK"
     gene            complement(1995..2234)
                     /gene="yidD"
                     /locus_tag="U1404_000756"
     CDS             complement(1995..2234)
                     /gene="yidD"
                     /locus_tag="U1404_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002272085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEM5347729.1"
                     /translation="MTRLLIGLVRFYQKFISPLFQPSCRYRPTCSAYMIEALQKHGLR
                     GFLMGLARIGRCHPFVEGGEYPVPDRFSLKRNKQK"
     gene            complement(2234..2965)
                     /locus_tag="U1404_000757"
     CDS             complement(2234..2965)
                     /locus_tag="U1404_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5347730.1"
                     /translation="MRINKYIAHAGVASRRKAEELIKQGLVTVNGQVVRELGTVIKSG
                     DKVEVEGKPIYNEEKVYYLLNKPRGVISSVSDDKGRKTVVDLLPTVKERIYPVGRLDW
                     DTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRGVVIDGKKTKP
                     AVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGNLDLTGLRP
                     GEYRKLNKKDISKLHTLAVTKPVKK"
     gene            complement(2955..3524)
                     /locus_tag="U1404_000758"
     CDS             complement(2955..3524)
                     /locus_tag="U1404_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein B"
                     /protein_id="HEM5347731.1"
                     /translation="MNRLAEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSE
                     KYMADKASGLAILESSNRYKLVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQ
                     PITRIEVDDIRGVNSSGAISKLQAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSL
                     EELPDVSEIDLIQEETELFVERNELENEN"
     gene            complement(3508..4227)
                     /locus_tag="U1404_000759"
     CDS             complement(3508..4227)
                     /locus_tag="U1404_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEM5347732.1"
                     /translation="MDIKLKDFEGPLDLLLHLVSKYQVDIYEVPITEVIEQYLAYIAT
                     LQAMRLEVAGEYMLMASQLMVIKSRRLLPKVVEQIDPEDDPEMDLLDQLEEYRKFKLL
                     SEKLGEQHDERANYFSKPKLDLIYDDVQLAKDKTIIDIFLAFSKVMAEKQASLRQSHA
                     TIARDEYKIEDMMDFVRSRFETGPRLELRQLFQESQDVNEMITIFLATLELVKVHEIV
                     LEQTETFGDIYLVRSEDESLS"
     gene            complement(4227..4958)
                     /gene="xerD"
                     /locus_tag="U1404_000760"
     CDS             complement(4227..4958)
                     /gene="xerD"
                     /locus_tag="U1404_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEM5347733.1"
                     /translation="MKQAIESFIQSKKVSVNSQKSYTYDLQQFVTVTKGEISQQSLLV
                     YQQSLLDLKPAAQKRKMSAVNQFLYFLYENNLLDRFYKLQTMSEPASVKKKLEREDLT
                     LLFQESPWLDGQLITLLIALLGLTPSEIAELTSQQVNLDFQVLTVEKGGAKRVLTLPK
                     ELIPYMESHLSGRYVFDKKGQTYSRQWFFNRLTEFVQSIGKPDWTAQKLREQYILKHM
                     DEGKSLDQIAKQLGLKTSMSLEKFR"
     gene            complement(4955..5413)
                     /locus_tag="U1404_000761"
     CDS             complement(4955..5413)
                     /locus_tag="U1404_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM5347734.1"
                     /translation="MIAREFEVFLLDQEGTFLTPADKLAVIIDTHNIDHAKLLLSHMT
                     YSRVPVVTEDGRFFGTIGLTEIIKYQAENELSDDELNRDISVIVKTDEETVGLDYDLT
                     EVMRKLIDQSFLPVLGENREFLGIITRKSILKAINALLHNFPLASKEGKK"
     gene            complement(5410..5937)
                     /locus_tag="U1404_000762"
     CDS             complement(5410..5937)
                     /locus_tag="U1404_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5347735.1"
                     /translation="MAGASKTILVMSDSHGDRQIVEDIKHHYLGKVDAIFHNGDSELD
                     SQDSLWDGIQVVNGNCDYFGGYPDQLITQLGDVTIAQTHGHLYGINYGWQRLDYWAQE
                     VDADICLYGHLHVPDAEVRGKTLFLNPGSVSQPRGLVRECLYALVTIYDDHFHVDYYN
                     RQHQLYPALTKDISR"
     gene            complement(5910..6920)
                     /locus_tag="U1404_000763"
     CDS             complement(5910..6920)
                     /locus_tag="U1404_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-triphosphate diphosphatase"
                     /protein_id="HEM5347736.1"
                     /translation="MTDKIYEYRDEHNWFIGKASFANLFGSFGENGREQEIYQIGQLF
                     DKLIAGNYEDENFNQCVNIEVIKLQSEFALFQFACDTLNELNNRQFKVLQHQGAILVT
                     ENDKLLLVHLPQAGVSTADFFGQDKGLASVGDTILIATKNEGKTKEFRKFFERFGYQV
                     ENLNNYPDLPDVAETGMTFEENARLKAETIAELTGKMVLADDSGLKVDALGGLPGVWS
                     ARFSGPDATDELNNAKLLHELAMVFELKDRSAQFHCTLVMAAPNRDSLVVEADWEGFI
                     GMDLRGEDGFGYDPLFLVGETGKTSAELTLEEKNKISHRAQALEKLVEAFPVWQEQAK
                     QS"
     gene            complement(6917..7711)
                     /gene="racE"
                     /locus_tag="U1404_000764"
     CDS             complement(6917..7711)
                     /gene="racE"
                     /locus_tag="U1404_000764"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000370386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEM5347737.1"
                     /translation="MDNRPIGFLDSGVGGLTVARELMRQLPHEEIVYIGDSARAPYGP
                     RPAEQIREYTWQLVNFLLTKNVKMIVFACNTATAVAWEEVKEKLDIPVLGVILPGASA
                     AIKATQTGKVGVLGTAMTIQSDIYRQKIQALSPETQVDSLACPKFAPLVESNSHQSSL
                     AKKVVYETLRPLVGKVDTLVLGCTHYPLLRPIIQNAMGKDVKLIDSGAECARDISVLL
                     NYFQINRSRTEKDIQHRFYTTASPAAFKEIAESWMGIDIHVEHVEL"
     gene            complement(7801..8037)
                     /locus_tag="U1404_000765"
     CDS             complement(7801..8037)
                     /locus_tag="U1404_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HEM5347738.1"
                     /translation="MNLGLAILLIVLAFAGGVALGIYLSRKQVENYIADKPVLDENAL
                     RLMMSQMGQKPSEAKVQQVLRQIKSQQKVASKKK"
     gene            complement(8140..9387)
                     /locus_tag="U1404_000766"
     CDS             complement(8140..9387)
                     /locus_tag="U1404_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEM5347739.1"
                     /translation="MTKTPFVSKEVLETITEQFPTPFHLYDEKGIREKARALNAAFAW
                     NKGFKEYFAVKATPTPAILKILQEEGCGVDCATDVEVLMSEKLGFKDIMFTSNDTQAQ
                     EFVYARKVGATINLDAYEHIEFLKNVAGIPETVCLRYNPGGVFSLGTDIMDHPEESKF
                     GMTKEQLMKGYKELKELGVKEFGIHAFLASNTVTNDYYPVLAHQLFELALEIREETDV
                     TLDFIDLSGGIGVNYRPEQEPNDIAVIGEGVRKVYEEILTPAGMGHIKIFTELGRFML
                     APHGHLITKVLHRKETYRTYIGVDASAANLMRPAFYGAYHHITNITRPDAPIEVVDVA
                     GSLCENNDKFAVNRELPRAEVGDTLVIHDSGAHGFSMGYNYNGRLRSSEILLQEDGTA
                     RMIRRAETPEDYFATIYGFDFDR"
     gene            9521..10852
                     /gene="pepC"
                     /locus_tag="U1404_000767"
     CDS             9521..10852
                     /gene="pepC"
                     /locus_tag="U1404_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014607929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM5347740.1"
                     /translation="MSTLDFDFTERLYANYLANPSLQATENAVSHNGLLKSLETRQSA
                     IDNDYVFSIDLTKDAVSNQKASGRCWMFAALNTFRHKLISDFKLENFELSQAHTFFWD
                     KYEKSNWFLEQIIATADQEIGSRKVKFLLDTPQQDGGQWDMVVALFEKYGVVPKSVYP
                     ESISSSASRELNQYLNKLLRQDAQILRDLLAKGASSKEVQIQKENLLQEIFNFLAVNL
                     GLPPRSFDFAYRDKDNVYHRNTNVTPQAFYEKYVGLKLSDYVSIINAPTTDKPYNKSY
                     TVELLGNVVGAPAVRYLNVEMNRFKELAIAQLKAGESVWFGSDVGQSSNRQTGIMATN
                     TYDFSSGLGIHFHQDKAGRLDYSESLMTHAMVLTGVDLDDNEQPLKWKVENSWGDKVG
                     DKGYFVASDSWMDEYTYQIVVRKEFLTQEELAAYQAQPQVLAPWDPMGALA"
     gene            complement(10902..11603)
                     /locus_tag="U1404_000768"
     CDS             complement(10902..11603)
                     /locus_tag="U1404_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEM5347741.1"
                     /translation="MNNDSFIINQVDNTALNRFFGKIYGVVAMGIGLSALVSFLAVTV
                     FQSLLLSLLSAGSIIMMLIMIGQIALVVSASAMAAKNSPMALPMFLAYSVTNGITISM
                     ILMFYTSETVVLAFVSAALMFAIMAVIGMTTKKDLSGMAQALRAALWGIIIASVINIF
                     LRSSGLSFMMSIISVLVFSGLIAYDNQRIRNVFEQTGGNVGQGWVVSMALQLYLDFIN
                     LFLNLLRIFGGLSRD"
     gene            complement(11625..12107)
                     /locus_tag="U1404_000769"
     CDS             complement(11625..12107)
                     /locus_tag="U1404_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM5347742.1"
                     /translation="MVAYKQDKEYMDYVGHLIATPKVQKLGKIPHHYYSTRLEHSINV
                     SYTSYKIAKKFGWDAKSTARGGLLHDLFFYDWRDTKFNKSHAWVHPRIAKRNAQKLIQ
                     LNKLEEDIIVKHMFGATIAPPRYKESWIVTCVDKYWAVREWSLPMQHKWKNRKVFRFQ
                     "
     gene            complement(12155..12895)
                     /locus_tag="U1404_000770"
     CDS             complement(12155..12895)
                     /locus_tag="U1404_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEM5347743.1"
                     /translation="MDIIRSKTNNLVKQVKKLQQKKYRTSSYLIEGWHLLEEAMEAGA
                     NIEHIFVVEEYFEKVAGLANVTVVSPEIMQDLADSKTPQGVVAQLALPSQLLPETLDG
                     KFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPVYR
                     MPISSILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGNEGQGISDLVADEAD
                     QLVHITMPGQAESLNVAIAAGILLFSFI"
     gene            13060..13341
                     /locus_tag="U1404_000771"
     CDS             13060..13341
                     /locus_tag="U1404_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEM5347744.1"
                     /translation="MRKVKMIASGIVQGVGFRWSVQYLAMEIGDIAGRVWNNEDGTVT
                     ILAQSENAEKLSHFIHEIRKGPSRMAKVTYLDVTLANFEDYKDFQVSYR"
     gene            13432..14325
                     /gene="yidC"
                     /locus_tag="U1404_000772"
     CDS             13432..14325
                     /gene="yidC"
                     /locus_tag="U1404_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006269468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM5347745.1"
                     /translation="MLSGMALSTLLFLSGCVQTDKSGNPTGLIWDWLGQPMSNLIRFF
                     AEDQALGFGLAIIIVTLLVRFIILPLGIYQSWKAAIQSEKMNYLKPILGPIQERMKNA
                     SSQEEQLAAQQEYFATQKQYGVSMLGGIGCLPMLIQMPFFSAIYFAARHTPGISEATF
                     LGINLGSTSLILTVVAGILYYAQSLLMQVGMDEEQKKQMKTMALMNPIMIMMFSFGSP
                     AGVTLYWVVGGLFGILQQAITNFILKPRIRKQVEEEFKNITVSATPRKTKDVTPTASA
                     VIEEKTSNKKRNRNAGKQRSR"
     gene            complement(14409..14891)
                     /gene="greA"
                     /locus_tag="U1404_000773"
     CDS             complement(14409..14891)
                     /gene="greA"
                     /locus_tag="U1404_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEM5347746.1"
                     /translation="MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDL
                     SENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETE
                     EEVYHIVGAAGADAFANKISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVEKTK
                     "
     gene            complement(14965..16782)
                     /gene="mltG"
                     /locus_tag="U1404_000774"
     CDS             complement(14965..16782)
                     /gene="mltG"
                     /locus_tag="U1404_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEM5347747.1"
                     /translation="MTKDTNEKNTQSSGFRDQILRDLEELKVKRLAEQSADVLVDKRN
                     EVINELQPSLAEEKAPHRETEIVKVEGIAFPDSYLSEEQQESEVMTESIEEPTSETLA
                     TPETFVIEKEVVSSPVPQDTVERNLEKLRNLVAANTAGFDEVPSSSSVSEPVESVLPG
                     NSPLEDTFLEFPTEDVSAVTGDTEIISLEETIIAPKTTAIVPEVDKQMQETQPRRRTT
                     HRTSKQRRKKQDNAAKHIVSVIMSIVVVAVLVTGVTGYMWVKSSLEPVDAKATETIQV
                     EIPEGTSTLEIGKILVDNKLIKNATIFNYYSKIKSYNNFQSGFYNLKQNMSVDDIAKA
                     LQESGTPTAQKEAAGKVLIVEGYTLTQIAQAITDNTNTKDKNDKTPFTAEQFMATVTN
                     QDFINRMVATYPKLFASLPAADSGVIYQLEGYLFPAVYEYSDETTIEELVEQMIAAMD
                     NRLQPYYETITAKNLTVNEVLTLASLVEKEGSTDEDRRNIASVFFNRLNAAMPLQSNI
                     AILYAQGKLGQETTLAEDAAIDTSIESPYNIYWTPGLMPGPVDSPSLSAIEAVINANT
                     TDYLYFVADVTTGNVYFTNNIDEHNQNVAKYVNAHLNNE"
     gene            complement(16854..17339)
                     /locus_tag="U1404_000775"
     CDS             complement(16854..17339)
                     /locus_tag="U1404_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347748.1"
                     /translation="MEIRFATPSDLEQVVLIENANFSKEERIAESVLATYLNTLSKTC
                     LIMEHDGEIAGYLLSCPSVSQTVTDDIFYLTESDMPTGSHLAIASLSVADSYKGQGVG
                     TLLLAAIKEVALAGGFEGVSLTCKGYLISYYEMNQFEDFGPSLSQFGGQRWSDMYWKA
                     L"
BASE COUNT         5069 a         3895 c         3231 g         5185 t
ORIGIN      
        1 ttaaactttc tttaaaatag gttgagctgc tttgtaacag atataaaata ttgctgaaag
       61 cacaatccct tgtaaaagat taaaaggaag taccatcatc aaaagatagt tagtcagccc
      121 caagatttct ttaatatcaa aatttgcaaa ggctgcataa acaggcaccg cataaacgta
      181 atttaatacc agcatcactg ctgtcgaacc aattgtcgca acagcggctg cttttaaata
      241 attttttaac gtttgttcat ttttccagaa ataagctact gctaaaatga aaactgacat
      301 agctgcaata ttcatcggta agccaataat tgtcgatggt ccctgattat ttaaaatcag
      361 tttgagaaaa gttcgtacca aaaggatagc aaaactagac ttcatatcta gaacaagcag
      421 accaaataaa atcggtacga gagaaaaatc cacttccagg aaactggctg ttggaatcag
      481 cggaaatttc aaatacatga gcagaaagga tactgctgag agaatggcga taatcgtcat
      541 tttgcgtgtg tttgtcataa ggttcctcca atttttgaaa attgaagaag cgtggaagag
      601 caggcaaaaa gcctccactt cgtcttctcc catccagact ttactgtcgg ttgtggaatt
      661 gcaccacatc agctttcgct cgcagactac caacggtcta ttttgttcta atactgcgtt
      721 agctcatctc gacatacatt cagtatggtc ttcgattcgc tgcctagtct taaaacaaat
      781 taccacgttt tacactgccg gtcgggaatt tcaccctgcc ctgaagacta tttcatcata
      841 ccaaaaaagc cttgcatttg caagagcttg gtaagttttc actattttaa cttgtcccca
      901 tcataggtgt gaaccaaatc tagaccagcg aactgttgct gccgaagagc ttcatataca
      961 atcatacacg ctgtattaga gacattaaga ctacgcacat gttcatcatt cattggaata
     1021 cggatagcct tctctggatg ttcacgcata aaatcttctg gcaagccctt atcttcacga
     1081 ccaaataaga aataatgaat gttcccatca ttatagtctt catccgaata ggttttatca
     1141 gcaaatttag atactaagtg aacacgtcct tgtttgctgg cataatccat aaattctgct
     1201 aaattgtcat agaagcgaac atctaactta tcccaataat ctagtcctgc acgtttcatc
     1261 ttacggtcat caattggaaa tcccataggc ttaatgatat ggagaggact attggttgca
     1321 gcacaagttc gagcaatatt gcctgtattc tgtggaatct gtggttcaaa taagacaatg
     1381 tggtttttgg ctgtttcttc tatatactct aatgtttcaa tattcataag gacccctctg
     1441 gtgacatttc actaaacacg aatacccttc gaaaatcaaa tccaaaccat gtcagatgca
     1501 ttttaccgta taccagtacg gtctgttgct tgttatctag tttctttttt tgattttcat
     1561 tgagtaaaaa gactcgactg tctcctatgg caagaaagac aaaaaaatag ccacactgcc
     1621 cggagtcaag ctcagcaaac agcatggtga atgatgattc attcacttaa ctcacaacag
     1681 gtttgagtta aatcaatgaa atcgtgatac tattgtagct taaagaaggc tgaaaatcaa
     1741 gagttttgcc ctattttttt caaattttca tagaaaatca tgggggctgg gcaaaaagac
     1801 caacctagct tcgcagagtt cgtgtcaaca tctgagcgca gtgattgatt ggctttaaca
     1861 gtccagtgga ctgttaatat tgaggcgaac ttgcttcgcc ctatctccag ccttcaaagg
     1921 ctcccaaacc ttttgagaga gtactaaagg caacataaaa acctatattt atacagaata
     1981 aaaagtaggt tgccctactt ctgcttattt cttttcaaac taaacctgtc cggcacagga
     2041 tattccccac cttccacaaa gggatgacag cgaccaattc gagccaaccc catcaaaaag
     2101 cccctgagtc catgtttttg taaggcctcg atcatataag ccgaacaagt tggacggtag
     2161 cgacaagagg gctgaaaaag gggggaaata aatttctgat agaatcggac caagccgatt
     2221 aaaagtctag tcattatttt tttactggct tagtaacagc cagggtatgt agtttactga
     2281 tgtctttctt attgagcttg cggtattctc ctggacgtag gccggtcaag tcaagattac
     2341 caaagcgagt acgagacagt ttatctacct gcaagccgac agcctcaaac atcttcttaa
     2401 cctggtggtt tcgaccttca tggattgtta attctacaac tgatcggttc ttaacagggt
     2461 ccaccttgat aatctcgtac accgcaggct tagtcttttt gccatcaatg acaacaccac
     2521 gggtcaaggg acgcaaaact tccttgttgg caactccttt gacacgcgcc aagtaaacct
     2581 tatcaatctc attacgtggg tgaatcattt cgtctgtaaa atcaccgtca ttggtcaaaa
     2641 tcaagacccc agatgtatcc cagtccagac gtccaactgg ataaatccgc tccttaactg
     2701 ttggcaacaa gtccacaact gtctttcttc ccttgtcgtc tgacacacta gaaataacac
     2761 ctcgtggttt attgaggaga tagtagacct tctcttcgtt ataaattggt tttccctcaa
     2821 cctctacctt atcacccgat ttgataactg tccctagctc acgaacaacc tgaccattta
     2881 cagtaactag tccttgtttg attagttctt ctgccttacg acgactggca actccagcat
     2941 gggcaatgta tttattaatt ctcattttct aactcatttc tttctacgaa tagctctgtt
     3001 tcttcttgaa tcaaatctat ttcagacaca tcaggcaatt cttctagact attaattccc
     3061 atgtaatcca ggaaataatc cgttgtcaca tagagatttg gtctaccaag aacctctttc
     3121 ttaccgttct cacgaatgag gtcaaaggcc tgtaatttac tgatggcacc gctggaattg
     3181 actccgcgaa tatcatcaac ttcaatccga gtaatgggtt gcttataggc tacgattgat
     3241 aaggtttcca aaagagcccg tgacatagtc tgattgattg gtgttttggc atagattcgc
     3301 aaaaggtttg catattcttt tttagtaacc aacttgtagc gattggaaga ctctaagatg
     3361 gctaagcctg acgctttgtc tgccatatat ttctcactaa gtttctctaa ctgctggctg
     3421 acagctgtcg gctgcatttc caacatctct gccaaatttc gtaacgtcaa gccatcctca
     3481 cctgccacaa agagcaggac ttcgatttca gctaagcgat tcatcttcac tccttactag
     3541 ataaatatct ccaaaagtct ctgtctgctc caagacgatt tcatgaacct tgaccaactc
     3601 taaagtcgca aggaagatcg taatcatttc attgacatct tgactttctt gaaaaagctg
     3661 acggagttca aggcgtggac ctgtctcgaa acgactgcga acaaagtcca tcatgtcttc
     3721 gattttatat tcatcacggg caatggtcgc atgagactga cggaggcttg cctgtttttc
     3781 agccattact ttagaaaaag ctaggaaaat gtcaatgatg gtcttatcct tagctaactg
     3841 tacatcatca taaatcaaat ctaatttggg ttttgaaaaa taattggccc gttcatcatg
     3901 ttgctcccct aatttctcac tgagaagctt gaacttgcgg tattcttcca actggtccaa
     3961 gaggtccatt tcaggatcat cttcgggatc aatttgctca acaaccttcg gtaataaccg
     4021 acgacttttg atgaccatca attgactagc catgagcata tattctcccg ctacctctaa
     4081 acgcatggct tgcaaggtag caatgtaggc caaatattgc tcaataacct ctgtaatcgg
     4141 aacctcgtaa atatctactt gatacttgga caccaggtgt agcaggagat caagtggccc
     4201 ttcaaaatct tttaatttta tatccattat ctaaattttt ccaaactcat gcttgttttc
     4261 agtcccaact gcttggcgat ttggtccaag gattttcctt cgtccatatg ttttagaata
     4321 tactgctccc gtaatttttg ggctgtccaa tcaggcttgc cgatggactg gacaaattct
     4381 gtcagacgat taaaaaacca ttgacgagaa taggtctgtc ccttcttatc gaagacatag
     4441 cgtccagaca gatgagactc catatagggt atcaattcct tgggcagagt gagcacccgc
     4501 ttggctcctc ccttctcaac tgtcaggact tgaaaatcca gattgacctg ctgactagtc
     4561 agctctgcta tttcactagg agtcagccct agtaaggcaa tcaaaagagt aatcagttgc
     4621 ccatcaagcc aaggactttc ttgaaagagg agagttaaat cctcacgctc cagtttcttt
     4681 ttgacgcttg ctggttctga catcgtttgc aatttataaa aacgatccag gagattattt
     4741 tcataaagaa agtagagaaa ttgattgacc gctgacattt ttcttttctg agcagcaggt
     4801 ttcaagtcta gaagagactg ctgatagacc aaaagagact gttggctaat ctcccccttt
     4861 gttactgtca caaactgctg caggtcatag gtataggact tttggctgtt gacactgacc
     4921 tttttgctct ggataaaaga ttcaatcgcc tgcttcattt cttgccttct tttgatgcca
     4981 agggaaaatt atgcaaaagc gcattgatgg ctttcagaat agatttacgg gtaataatcc
     5041 ccagaaattc cctgttttct ccaagaactg gtaggaagga ttggtcgatg agcttgcgca
     5101 tgacttctgt caaatcataa tccagaccta ccgtttcttc atctgtcttt acaatcacag
     5161 aaatatctct gtttaactca tcatccgata gttcattttc agcttgatat ttaatgattt
     5221 ctgtcaagcc gatggttcca aaaaagcggc catcttctgt taccacaggt acgcgtgaat
     5281 aggtcatgtg actgagtaac agttttgcat ggtcaatatt atgcgtatca ataattactg
     5341 ccaatttatc cgctggtgtc aagaaagttc cttcctggtc caataaaaag acttcaaatt
     5401 ctcttgcaat catcttgaaa tatcctttgt caatgctggg taaagttggt gctgtcgatt
     5461 gtagtaatcc acatggaagt gatcatcata gatggtcaca agagcataga gacactctct
     5521 gaccaaaccg cgaggttgac taacggagcc aggattgagg aagagggtct tgccacgcac
     5581 ttcggcatca ggcacatgca gatgcccata caaacaaata tccgcatcaa cttcctgtgc
     5641 ccaataatcc aaccgctgcc agccgtaatt aatgccataa agatgaccat gagtctgagc
     5701 gatagtcaca tcacccaatt gagtaatgag ctggtctgga taaccgccaa aatagtcgca
     5761 gttgccattt accacttgaa taccatccca gagactatct tgactatcca gctccgaatc
     5821 accattgtga aagatggcat cgaccttgcc aagataatga tgtttaatat cctctacaat
     5881 ctgtctatcc ccatgagagt cgctcatgac taggattgtt ttgcttgctc ctgccatact
     5941 ggaaatgcct ccactaattt ttctagtgct tgtgcacggt gggaaatctt atttttttct
     6001 tctagggtta attctgccga ggtcttacct gtttcaccta cgaggaaaag tggatcatat
     6061 ccaaacccat cttccccacg gaggtccata ccgataaagc cttcccagtc cgcttcgaca
     6121 accaaactat cacgatttgg agcagccatg accagagtac aatggaattg tgccgaacgg
     6181 tctttcagtt caaataccat ggccaattcg tgcaagagct tggcattatt gagctcatct
     6241 gtggcatctg ggcctgaaaa acgggcagac caaactcctg gcaaaccacc taaagcatca
     6301 accttcaaac cagaatcatc tgccaagacc atcttgcctg tcagctctgc tatggtttca
     6361 gccttgagcc gtgcattttc ctcaaaagtc ataccagttt ctgctacatc tggcaggtca
     6421 ggatagttgt tgaggttctc aacctggtag ccaaaacgct caaaaaactt acggaattcc
     6481 ttggtcttac cttcattttt tgtagcgatc aagatggtat ctcctacgct tgccaatccc
     6541 ttgtcttgac cgaagaaatc tgccgtgcta acccctgctt ggggcaaatg gactaagaga
     6601 agtttgtcat tctcagttac cagaatagct ccttggtgtt ggagaacctt gaactgacga
     6661 ttgtttaact cattcaaagt atcacaggca aattgaaaga gggcaaattc agactgaagt
     6721 ttaatcactt caatgttgac acactggtta aagttctcgt cttcataatt gccagcaatc
     6781 agtttgtcaa ataattgacc aatctggtaa atttcctgct ctctgccatt ttcaccaaat
     6841 gaaccaaata gattggcaaa gctggctttt ccgataaacc aattgtgttc atctctgtat
     6901 tcgtatatct tgtctgtcat agttctacat gctccacatg aatatcaatg cccatccagc
     6961 tttcagctat ttctttaaaa gctgccggac tagctgttgt gtaaaatctg tgctgaatat
     7021 ccttttcggt acgactgcgg ttgatttgaa aataatttaa taaaacagaa atatctcgcg
     7081 cgcactctgc cccactgtca atcaacttga catccttgcc catggcattc tggatgatgg
     7141 ggcgaagtag gggataatgg gtacatccca agaccaaggt atccactttc ccaacgagtg
     7201 gtcgaagtgt ctcataaaca acctttttgg caagactgga ttggtggcta ttggactcaa
     7261 ccagtggtgc aaatttggga caggctaggc tgtctacctg cgtttctgga gaaagggcct
     7321 gaatcttttg tcgataaata tctgattgaa tggtcatagc cgttcctaag acaccaacct
     7381 taccagtttg cgtcgcctta atagctgccg aagcacctgg taaaataact cccaaaacag
     7441 gaatatccaa cttttccttg acttcttccc aggctaccgc tgttgccgta ttgcaggcaa
     7501 agacaatcat ttttacattt tttgtcaaaa ggaaattgac caactgccaa gtatattctc
     7561 tgatttgttc cgctggacgg gggccataag gtgcccgtgc cgagtcccct atataaacaa
     7621 tttcttcatg gggaagttgg cgcattaact cacgcgcaac cgttaatccc cccacacctg
     7681 aatctaaaaa acctattggt cgattatcca taatactgag aatagccaga aaatctgact
     7741 agcctttctt ttctactcaa aaaatgggat ctgggaatga atatcccagt cccagtttga
     7801 ttattttttc ttgcttgcca ctttttgttg gctcttgatt tggcgaagta cttgttgtac
     7861 ttttgcctcg cttggttttt gccccatttg gctcatcatc aaacgcaaag cattttcatc
     7921 caaaactggc ttgtcagcaa tgtagttttc cacttgtttg cgtgacaagt aaatacccaa
     7981 ggctacacca cctgcaaatg ccaatacaat aagtaaaatt gctaaaccta agttcatttg
     8041 tcaatctcct gactcttcta aaaataattc attcggaatt gccctgcgac aatctcttaa
     8101 tgaatctatt ataccaaatt tagcaggctt ttccaagact tacctgtcaa aatcaaaacc
     8161 gtaaatggtc gcgaaataat cctctggtgt ttcagcacga cgaatcatac gcgctgtgcc
     8221 atcttcctgc aaaaggattt cagaggaacg cagacgaccg ttgtagttgt agcccatgga
     8281 gaagccgtgg gcaccactgt catgaatgac caaggtgtct cctacttctg cgcgtggtaa
     8341 ttcccgatta accgcaaact tgtcgttgtt ttcacagagg gaacctgcca catccacaac
     8401 ttcgattggc gcatctgggc gcgtgatatt ggtgatatgg tggtaggcgc catagaaggc
     8461 tggacgcata aggtttgcag ccgaagcatc cacacctata taagtccgat aggtttcctt
     8521 acgatggagc acctttgtaa tcaagtgacc gtgtggcgcc aacataaagc gacccaattc
     8581 tgtaaagatt ttaatatgtc ccataccagc tggcgtgaga atttcctcat aaaccttacg
     8641 gacaccctca ccaatgacag caatgtcgtt tggttcttgc tcaggacgat aattgactcc
     8701 aatcccacct gataggtcga tgaagtccaa ggtcacatct gtttcctcac gaatttccaa
     8761 ggccaattca aaaagttgat gagctaagac aggatagtag tcatttgtta ctgtattcga
     8821 agctagaaag gcatgaatac caaattcctt gacaccaagc tcttttagtt ccttatagcc
     8881 tttcatcaac tgttccttgg tcatcccaaa cttagactct tctgggtggt ccataatatc
     8941 cgttcccagc gagaagaccc cacctggatt gtaacggagg cagaccgttt ctgggatacc
     9001 agcaacattt ttcaaaaact caatatgctc gtaggcatca aggttaatgg tcgccccaac
     9061 tttacgagca tagacaaact cttgcgcttg ggtgtcattt gatgtgaaca tgatgtcctt
     9121 aaagcccaat ttttcactca tgagtacttc tacatccgtc gcacagtcca ctccacaacc
     9181 ttcttcttgt aaaattttca aaatagcggg tgtcggtgtc gccttgaccg caaaatattc
     9241 cttaaagcct ttgttccatg caaatgctgc attgagggca cgggccttct cacgaatgcc
     9301 tttttcatca tacaaatgaa aaggagtcgg aaattgctcc gtaatggttt ctaaaacttc
     9361 tttactaaca aatggtgtct tggtcatgtc actacctcat caaatatttt tcctattata
     9421 tcacaaatat gtgaggaact gtagctttca actccaccaa atacttgcaa aataaattat
     9481 gagcgctata atgtgattat cattaaaaaa ggagtaatat atgtcaacat tagattttga
     9541 ttttacagaa cgcttgtatg ccaactatct agctaatcca agcctacagg caaccgaaaa
     9601 tgccgttagc cacaacggac ttttgaaatc cttagaaaca cgccaaagcg ccatcgacaa
     9661 tgactatgtc ttttcaattg acttgaccaa ggacgctgtt tcaaaccaaa aggcttctgg
     9721 acgttgctgg atgtttgctg cattaaacac cttccgccac aagctcatct ctgatttcaa
     9781 actggagaat tttgagctat cacaggccca taccttcttt tgggataaat atgaaaaatc
     9841 caactggttc ctcgaacaaa tcattgccac agctgaccaa gaaattggta gccgtaaggt
     9901 aaaattctta ttggataccc cgcaacaaga tggcggtcaa tgggatatgg ttgttgccct
     9961 atttgaaaaa tatggtgtgg taccgaaatc cgtctatcca gaatctatct catccagtgc
    10021 cagccgtgag ctcaatcagt accttaacaa attgctccgt caagatgcac aaatcttgcg
    10081 agacctcctc gccaaaggag cttcctcgaa agaagttcaa atacaaaaag aaaacttgct
    10141 tcaagaaatc tttaacttcc tagccgtcaa ccttggactc cctccacgca gctttgattt
    10201 tgcatataga gataaagaca atgtctatca ccgcaataca aatgtgacac ctcaggcatt
    10261 ctacgagaaa tacgttggtt tgaaactatc tgactatgtc tccattatca atgctccaac
    10321 tactgataaa ccttacaata aatcttatac agtcgaattg ttggggaacg ttgttggtgc
    10381 ccctgctgtc cgctacctca atgtagaaat gaaccgtttt aaagaactag ctattgctca
    10441 actcaaagct ggtgagtccg tttggtttgg ttccgatgtc ggtcaaagta gcaatcgtca
    10501 aactggtatt atggcaacca acacctacga cttctcttca ggtctgggta tccatttcca
    10561 tcaagacaag gctggaagat tagactactc cgaaagcttg atgacccacg ctatggtctt
    10621 aactggtgtt gatttagacg ataatgagca acctctcaaa tggaaagtag aaaactcttg
    10681 gggtgacaag gttggggaca agggatactt cgtagcatca gatagctgga tggacgagta
    10741 cacttatcag attgttgtcc gaaaagaatt cctcacacaa gaagaactag cagcttatca
    10801 agctcaacca caagtccttg ccccatggga tccaatggga gctctagcat aacaaacgac
    10861 atataaaaaa agagggcacc cctctttttt atatgtcata attagtctcg actcaatcca
    10921 ccaaagatac ggagtaagtt gaggaaaagg tttataaagt caagatagag ctgaagcgcc
    10981 atagatacga cccaaccttg accaacatta ccaccagttt gttcgaaaac attgcggata
    11041 cgttggttgt cataagcaat caaacctgag aataccaaaa cagaaatgat agacatcata
    11101 aagcttagac cagagctacg aaggaagata ttaataacac ttgcaataat aattccccat
    11161 agagctgcac gcaatgcctg agccatacca gaaagatcct tcttcgttgt catcccaatt
    11221 acagccatga tagcaaacat aagagccgct gacacaaagg caagaacaac tgtttcgctg
    11281 gtatagaaca tcaagatcat gctgatggta atcccatttg ttactgagta ggcaagaaac
    11341 attggtagag ccattgggct atttttagct gccattgctg aagcagaaac aaccaaggca
    11401 atctgaccaa tcataatcag catcatgatg atggagcctg cactcagcag actaagcaat
    11461 aaagattgaa agactgtaac agctaggaat gatactaatg ctgatagtcc aattcccata
    11521 gcaaccactc cgtaaatctt gccaaagaaa cgattgaggg cggtgttatc cacctgatta
    11581 ataataaaag aatcgttatt catgacattc tcctttaaat catcttattg aaaacgaaag
    11641 accttgcgat ttttccactt gtgttgcata ggcagactcc attctcttac tgcccaatac
    11701 ttgtcaacac aagtcacaat ccaagactct ttatagcgag gaggagcaat cgttgcacca
    11761 aacatgtgct tcacaataat atcttcttct aatttattaa gttgaatgag tttctgagca
    11821 ttgcgcttag caatccgtgg atgaacccaa gcatgacttt tattaaactt agtatctctc
    11881 cagtcataga aaaagagatc gtgtaatagc ccaccgcgag cggtcgattt tgcatcccat
    11941 ccgaactttt tcgcaatttt atagcttgta taagatacgt taatggaatg ttccaaccgt
    12001 gtggagtaat aatgatgagg aatcttcccc aatttttgaa ctttaggtgt agcaattaaa
    12061 tgccccacat agtccatgta ttctttatct tgtttatatg caaccattct ttgaacctcg
    12121 ttggattatt ataccacact atagtacaat tggcttaaat aaagctaaat agtaaaattc
    12181 ctgctgcaat cgccacattg agactttcag cctgtcctgg catggtgatg tgaacaagtt
    12241 gatccgcctc atcagccact aaatcagaaa ttccctgacc ttcgtttccc atgagcaagg
    12301 caaaactaga atgtggcgta atttccttat agtcaaccga ctgactagat agggtcgttg
    12361 ccaagatttt tatctgattg cttttaagag ctgtaagaat ggaggaaatt ggcatccgat
    12421 aaactggcaa atggaagtga ctcccctgca tggaacgaag cactttcata ttataaatat
    12481 cagccgactt atccgataga aatactccat caaaaccagc tgcatcagct gtacgaatca
    12541 ttgtcccaac atttccaggg tcctgcacat cttccagaac caaaaatttt ccatccaaag
    12601 tctcaggtag aagttggctc ggcaaagcaa gttgagctac taccccctga ggtgtcttag
    12661 aatcagctaa atcttgcata atttcaggac tgacaactgt cacattggct aaacctgcaa
    12721 ccttttcaaa atactcttcc accacaaaaa tatgctcaat attggctcca gcctccatcg
    12781 cttcctccag caaatgccag ccctcaatca gataagaaga tgtccgatat tttttctgtt
    12841 gtaatttttt aacttgtttg accaaattgt tggtctttga gcgaatgatg tccatgtttg
    12901 tcccttttct ttttctgttc aacaacttta ttaataaaat accgggtacg cttgatacca
    12961 aatatatctt attccgtcaa gaaatcatca tcaagatggt gaacaggatt acccaaccat
    13021 gatataataa agtaaaggtc ttgtcaaaag gagaaactta tgcgtaaggt aaaaatgatt
    13081 gcatctggta ttgtccaagg agttggtttt cgatggtctg tccaatacct tgctatggaa
    13141 attggtgata tagctggtag ggtctggaac aacgaagatg gtactgtaac catcctcgcc
    13201 caatcagaaa atgctgagaa gctcagccat tttattcatg aaatacgaaa agggccctct
    13261 cgtatggcca aagtgaccta cctagatgtt accctggcca attttgaaga ctataaggat
    13321 tttcaggtta gctatagata aaacttgtat atttccgtca aaaaaagtaa aatagagagt
    13381 atactgaaaa aaacaaagga acgaaaaaaa ttgaaaaata aacgtctatt catgttgtca
    13441 ggcatggcct tatcaacact tcttttctta tctggttgtg ttcaaactga taaaagcgga
    13501 aatcctacag gtctcatttg ggattggttg ggacaaccaa tgtccaactt gattcgcttc
    13561 tttgcagaag atcaagctct aggatttggt cttgctatta tcatcgtcac cttattggtt
    13621 cgattcatca tcctcccatt gggaatttac cagtcttgga aagctgctat ccaatctgag
    13681 aagatgaatt atctcaaacc gattttaggc ccaatccagg agcgcatgaa aaatgcaagc
    13741 tctcaagaag agcaacttgc tgcacaacaa gagtattttg caactcaaaa acaatacggt
    13801 gtgagcatgc tcggcggaat tggttgtttg ccgatgctga ttcaaatgcc attcttctct
    13861 gcaatctact ttgcggctcg ccacacacca ggaatttcag aagctacttt ccttggtatt
    13921 aatttaggtt caactagcct gattttgaca gttgttgctg gtattttata ctatgcccaa
    13981 tcgctcttaa tgcaagtcgg catggatgaa gaacagaaaa aacaaatgaa aaccatggct
    14041 ctgatgaacc caattatgat catgatgttc tcatttgggt ctcctgctgg tgtgactctc
    14101 tactgggttg tcggtggtct cttcggtatt cttcaacaag ctattacaaa cttcattttg
    14161 aaacctcgta ttcgtaaaca agtggaagag gaattcaaaa atatcacagt gtcagcaact
    14221 cctcgtaaaa cgaaggacgt tactccaact gcttcagcag ttattgaaga aaagacatct
    14281 aacaagaaga gaaaccgtaa tgcaggaaaa caacgttcta gataataaac actaaaagat
    14341 tggaatttcc aatctttttt agcaccttcg tgaataaaaa gagagaatct ttcgactctc
    14401 tccacacctt atttcgtttt ttcaaccttc aagattttta catcataact accagcaggt
    14461 gtttcaattg ttgcaacatc tcctgttttt ttaccaatca aagcatgacc aattgggctt
    14521 tcatttgaaa tcttgtttgc aaaggcatct gcacctgcag caccaacgat atgatagact
    14581 tcttcctcgg tctcaccaac ttcttgaaca gtcacagtct taccaattgc tacttcatcc
    14641 gcagcaactg catcactgtt tacgatttca gcatagcgaa tttttgtttc gattgttgag
    14701 atttgacctt caacaaaagc ctgttcatct ttagctgctt cgtactcaga gttttctgaa
    14761 aggtctccgt aagaacgagc aattttaata cgttcaacaa tttctggtcg acgaactagc
    14821 tttagttcct ctaattcttt ttctagtttt tccttttctt ccaaggtcat tggatatgtt
    14881 ttttctgcca tttgtctttc cttttctttt atttttcatg aaaacaaaat tatgtggaaa
    14941 accacataat tttgttttaa gaatttactc attattaaga tgtgcattta catacttagc
    15001 aacgttttgg ttatgttcat caatattatt tgtaaagtaa acatttccag ttgtaacatc
    15061 tgctacaaag taaagatagt ctgttgtgtt ggcattaatc actgcctcga tagccgaaag
    15121 gcttggacta tccactggtc caggcatcaa tcctggtgtc caataaatgt tgtatggtga
    15181 ctcaattgat gtatcaatcg ctgcatcttc tgctagagtt gtttcttgac caagtttacc
    15241 ctgagcatac aagattgcaa tattagattg tagaggcatt gctgcattca agcggttaaa
    15301 gaagacactt gcaatgtttc gacgatcttc atcagtagaa ccttcttttt caaccaaaga
    15361 tgccaaggta agaacttcat ttacagtcaa attcttagca gtaatcgttt cataatatgg
    15421 ttgtaaacga ttatccatcg cggcaatcat ttgctcaacg agctcttcga tagttgtttc
    15481 atcgctgtat tcataaaccg ctgggaagag gtaaccttcc aactgataaa taactccact
    15541 atcagcagct ggtaagctgg caaacagttt tggataagta gcaaccattc gattaataaa
    15601 atcttggttg gtcacagtag ccataaactg ttctgcagta aatggtgttt tatcgttctt
    15661 atcttttgta ttagtattgt ctgtaatagc ctgagcaatt tgtgttaatg tatacccttc
    15721 aacaatcaaa accttccctg cagcttcttt ttgagctgtc ggagttccgc tttcttgaag
    15781 tgctttggcg atgtcatcca cagacatatt ttgttttaaa ttataaaaac cactttggaa
    15841 attattataa ctcttaattt tagagtagta attaaaaata gtagcattct taatcaactt
    15901 gttgtcaact aaaattttac caatttctaa agttgaagtt ccttctggaa tctctacctg
    15961 aatagtttct gtagcttttg catcgactgg ttccagacta gattttaccc acatataacc
    16021 agtaacacct gtcactagaa ctgccactac aacaatcgac atgataacag agacaatgtg
    16081 tttagcggca ttatcttgtt ttttacgacg ttgcttgctt gttctgtggg ttgttcttct
    16141 tctgggttgt gtttcctgca tctgcttgtc tacttctgga acaatagccg ttgtctttgg
    16201 agcaataata gtttcctcta gtgagatgat ttctgtatca ccagtcacag ctgacacgtc
    16261 ttccgttgga aattctaaaa atgtatcttc taaaggagaa tttcccggaa ggacagactc
    16321 tactggctca gaaactgacg agcttgatgg tacttcatca aatcctgccg tattagcagc
    16381 cacaagattc cttaatttct ccaagtttcg ttcaacagta tcttgtggaa ctggacttga
    16441 aacaacttct ttttcaatca caaaagtctc tggagtagcc aaagtttctg atgttggctc
    16501 ttcaatactt tccgtcatca cttctgattc ttgctgttct tctgacaagt atgaatcagg
    16561 gaaagcaata ccttctactt ttacaatttc agtctctcta tggggggctt tttcttcggc
    16621 aagactaggc tggagctcgt tgataacttc attacgctta tcaacaagaa catccgctga
    16681 ctgttccgcc aaacgtttca ccttcaattc ttccaaatct cgtaaaattt gatcgcggaa
    16741 gcctgaagac tgcgtgtttt tttcattcgt atcctttgtc acgctgttac tcctttcaca
    16801 cagttactat acattatatc ttaaaggctt atgaattgca agaacttccc tttctacaag
    16861 gctttccagt acatatcact ccacctttgt cctccaaatt gcgacaagga ggggccaaaa
    16921 tcttcaaact ggttcatttc atagtagcta atcaaatacc ccttacaggt cagggaaact
    16981 ccttcaaatc ctcccgctaa agccacttct tttatggctg ccaacaaaag agttcccact
    17041 ccctgtccct tataggaatc cgctacggat agactggcaa tagctaggtg actgcctgtc
    17101 ggcatgtcac tctctgtcaa gtaaaaaata tcgtctgtaa cagtctgcga aacagaggga
    17161 caggataata aatatcctgc tatttcccca tcgtgttcca ttattaaaca ggttttactc
    17221 aaagtattca gataagtagc aagaacagac tcagctatcc gttcctcttt agaaaaattg
    17281 gcattttcaa tcaaaacaac ttgttctaaa tccgaaggag tagcaaaacg aatttccata
    17341 attttctccc ttatatagcg gaaaaacaga ggccataggc
//
LOCUS       DASGCC010000034        17345 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.034, whole genome shotgun sequence.
ACCESSION   DASGCC010000034 DASGCC010000000
VERSION     DASGCC010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17345
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.034"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(59..1279)
                     /gene="pepT"
                     /locus_tag="U1404_000776"
     CDS             complement(59..1279)
                     /gene="pepT"
                     /locus_tag="U1404_000776"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEM5347749.1"
                     /translation="MKYPTLLDRFLVYVKENTRSDENSTTTPSTQNQVEFAQNILLPE
                     MKRIGLQNVHYLPNGFAVGTLPANDPSLTRKIGFIAHMDTADFNAEGVNPQIIENYDG
                     NPIALGTSGYELHPKDFPQLANYHGQTLITTDGTTLLGSDDKSGIAEIMTAIEFLVQN
                     PDIKHCEIRVGFGPDEEIGVGADKFDVEDFDVDFAYTMDGGPLGELQYETFSAAGAKI
                     DFLGRNVHPGSAKDQMINAFQMAIDFHNALPEADRPEKTEGYEGFFHLMNMEGSVDTA
                     STTYIIRDFEEEDFLARKQLMLDIAEKMNAKFDTPRVIVNLHDQYYNMKKIIEKDMTP
                     INIAKDVMENLGIKPLIEPVRGGTDGSKISFMGIPTPNIFAGGENMHGRFEFVSLETM
                     EKAVDVILGIVAYK"
     gene            complement(1289..2104)
                     /locus_tag="U1404_000777"
     CDS             complement(1289..2104)
                     /locus_tag="U1404_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5347750.1"
                     /translation="MIKLIALDMDGTLLNEKKELMQPQIDAIHQAVEAGVKIVLCTGR
                     PLAGVKPFVEQLGFDTEEEFIIVNNGCSTHSTKDWSLIDWEELSISDIDYLSTFIEND
                     DVQISLFDEEDYFVLAEKANARVNLDAGLVGMTPQPIVLKEAQSGQHRFFEAMFVGEK
                     EHIDAFENQHNPVLSQHYSTVRSQDYLLEILPNGASKASGLKKLADRLGILPEEIMAM
                     GDANNDLEMIEFAGLGIAMGNANEQVKAIAQDITDTNENNGVAKAIEKHILNK"
     gene            2486..2956
                     /locus_tag="U1404_000778"
     CDS             2486..2956
                     /locus_tag="U1404_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEM5347751.1"
                     /translation="MKISVKKEAGHYLLSICYSVSASLTEAWDLLATDSGFAHWFPQL
                     NIVGNTLVFEMEGFREVMDLLEYRKNEKIAYRWDSATVSFTLSQLENQTLITFEERIP
                     EDFGNEFANAQKDMTGWLVPNECIKKFLEGQEPPVCQPLQEKWRTFLELELEGL"
     gene            2974..3231
                     /locus_tag="U1404_000779"
     CDS             2974..3231
                     /locus_tag="U1404_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347752.1"
                     /translation="MKKWWEQLKEEYYETRFDSNEDWMEWFIKRKMTWGWRWPTAITI
                     FVLWALSLPDARNVVRFFYFLLTLGVATVLHKLISYLKRRK"
     gene            3238..4491
                     /locus_tag="U1404_000780"
     CDS             3238..4491
                     /locus_tag="U1404_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEM5347753.1"
                     /translation="MHQITCPHCGTAFQVNETEYSQLLAQVRGAEFDKEIHDRLERER
                     ELLSQKAENDLQARLSDKDKEILELTAKLDKFASQTELEISSAISQKDQEIQELKAQL
                     GQIGLAKDLELQQAVAQVEKERDAAQNALVLQEQKQELALATTRQEYEVRLKAADEQV
                     EFYKNFKAQQSTKAIGESLEQFAEAEFNKVRSYAFPHAKFAKDNEVSASGSKGDFIFR
                     DFDESGLEFISIMFEMKNEADTTKTKHKNADFFKELDKDRREKKCEYAVLVSMLEADN
                     DYYNTGIVDVSHEYEKMYVIRPQFFIQLIGILRNAALNSLQYQQELALVKEQNIDITH
                     FEEDLEIFKNAFAKNYQSASNNFQKAIDEIDKAIKRMEAVKAALTTSENQLRLANNKL
                     DDVSVKKLTRNNPTMKAKFEALREE"
     gene            4493..4987
                     /locus_tag="U1404_000781"
     CDS             4493..4987
                     /locus_tag="U1404_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347754.1"
                     /translation="MIVPLQFEHILQLDEAFQKQGWPSSKEILTNYLREQEKGERIVL
                     VAEETGVCKGYITLIKQVKEGPFYQSGIPEIADFNVFEDFQNQGIGWQLLDAICQLAS
                     EFTDIVGIGVGLNANYGKAQRLYVKHGFIPDGSGVWYRGRSLPVGAKAYNDDELALYF
                     TKKL"
     gene            5000..5230
                     /locus_tag="U1404_000782"
     CDS             5000..5230
                     /locus_tag="U1404_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1858 domain-containing protein"
                     /protein_id="HEM5347755.1"
                     /translation="MNTIDLNLPVAEIINQHPEVKDILVELGFKPLANPAMLNTVGKV
                     TNLKTGSKMTKIPLDRIQQVLECNGYEVIGGE"
     gene            5230..6555
                     /locus_tag="U1404_000783"
     CDS             5230..6555
                     /locus_tag="U1404_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF438 domain-containing protein"
                     /protein_id="HEM5347756.1"
                     /translation="MTEQRIDILKNILLDLHNGASPESVQDQFNQHFTGVSALEISMM
                     EHELMSSDTGITFEDVMNLCNIHANLFKGAIADVEVADMDQEGHPVYVFKQENLALRA
                     ALLRIRRIIDQHEQTEDAELKDQLLQGLTRQFGLLGQFENHYTRKEKVFFPIMERYGH
                     DAPPKVMWGVDDEIRDLFKTARKALEGGDLAATRAHFENFAKEFEEMIFKEEAILLMI
                     LLEIFTQDDWLQVAADSDAYGYAIVKPTAKWVPHREVFGEIAEQEVDSISPQPASPNQ
                     QIIDTPEGQFTITFTPKEKSETVQDRTSPQTFGNGYLSVEQANLILNHLPLELTFVNK
                     DDIFQYYNDSHPVEDMIFKRTPSQIGRHVELCHPPKIVDKVKKIFELLRTGQKDQVTM
                     WFKSESMGKFVYVVYKAVRDDQGEFQGVLEYVQDIQPFFEIDSDFHREI"
     gene            6586..6795
                     /locus_tag="U1404_000784"
     CDS             6586..6795
                     /locus_tag="U1404_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347757.1"
                     /translation="MDWPTIKIGDEGYYDAPLIFSYGYDEEAEEGIDEAVTFDAVPSE
                     TMRRIHKELENLIDTTFGSYRFYDD"
     gene            6848..7723
                     /gene="truB"
                     /locus_tag="U1404_000785"
     CDS             6848..7723
                     /gene="truB"
                     /locus_tag="U1404_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEM5347758.1"
                     /translation="MSGIINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGV
                     LPIAVGKATRMIEYMQEEGKIYEGEITLGFSTTTEDSSGDLVERTPVLDIAEQAVDEA
                     MTSFVGTITQIPPMYSAVKVNGRKLYEYARTGEEVERPQRQIEIYSFERTSPIELVDD
                     CARFTFRVRCGKGTYVRTLSVDLGAKLGYASHMSKLERTGSAGMDLADALTLEEISSL
                     VAENDFSFLQPIERGIGDLPVVELKEEQVQDATFGRFVELNAEAERLAGFHDGQLIAI
                     FEKRDQLYKPSKVLV"
     gene            7758..8681
                     /locus_tag="U1404_000786"
     CDS             7758..8681
                     /locus_tag="U1404_000786"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEM5347759.1"
                     /translation="MNIRTIKHYSELNQEEPTVLVLGYFDGIHLGHKALLDRARQVAD
                     EKGLSVTVLTFPETPRLAFSRFSPELLLHLTSQDQRYHLLEQYGVDQLVLTDFTSEFA
                     SNTPQQFLERYIKGLNAQVLVAGFDYHFGNCRADVTDLTELFDGQVEIVSEVSLGGEK
                     VSSTRIRQAIQSGEVSLANQLLGYPFMTEGIVVHGDARGRTIGYPTANLAPFDRVHLP
                     SEGVYVADVEVDGKRYRAMTSVGKNVTFDGTEMRIEAHIFGFHRFIYGEKITIFWLEK
                     IRDMVKFDGIEGLMEQMKSDEKFALQWGKYA"
     gene            8674..9420
                     /locus_tag="U1404_000787"
     CDS             8674..9420
                     /locus_tag="U1404_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEM5347760.1"
                     /translation="MLKRLIRHPFYEKAMTYIAVVYVFLIVLELMDASIANSSGYRVL
                     DLLLWFIFVCDYFAQLYYADDILEYVQGHILELIAIIPFDSFFSFLRLGRLARLFRLV
                     KVTRIFALSNRFWDTINKLLHTNSLSKVLMLNISAVLVSSVLLSVIEGKSFFDALWWS
                     IVTMTTVGYGDIVPQDTISKIIAILLMLVGICTFGMVTSTITRFFSETERETKLDILM
                     AKIDEQNETLLRLEKKIESLEKLGELQGRD"
     gene            9495..9896
                     /locus_tag="U1404_000788"
     CDS             9495..9896
                     /locus_tag="U1404_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HEM5347761.1"
                     /translation="MVTLFLSPSCTSCRKARAWLTSHEVPFIEHNIMTSPLTAEELKN
                     ILALTENGTDDLISTRSKVFQKLDIDVDELSVKQLIGLIETYPSLLRRPIILDEKRMQ
                     IGFNEDEIRAFLPRKYRKQELKNATLRAEIG"
     gene            9911..10189
                     /locus_tag="U1404_000789"
     CDS             9911..10189
                     /locus_tag="U1404_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HEM5347762.1"
                     /translation="MNKNYSYPLDFSWSTEEISSVLSFLNQVEAAYEKGADAVAILAS
                     YKSFKDVVKSKGQERQIDRDFEAVSGYSTYRVVKAARDKGKGVIRFGN"
     gene            10179..10937
                     /locus_tag="U1404_000790"
     CDS             10179..10937
                     /locus_tag="U1404_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEM5347763.1"
                     /translation="METKYHFAQTIVLEAGNFLRQHLHDDLQIEEKGDFTDLVTHLDK
                     QVQEMLTQQIQSRYQGDGILGEEGGDVSSIHEGNVWVIDPIDGTTNFIAQKTDFAIMI
                     AYFENGVGKFGIIYDVMRDKLFHGGDSFPVYCNQERLKKPELRPLRQSLIGINAKLYA
                     GNAHGVAELANQSLGTRSVGSAGIGFTHVLEGRLFAYASYLCPWDYAAASIIGSSLGL
                     VMLSFEGPSLTYDKREFVMLVSESHLKEVKGYIF"
     gene            10937..12238
                     /locus_tag="U1404_000791"
     CDS             10937..12238
                     /locus_tag="U1404_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmF rRNA methyltransferase first C-terminal
                     domain-containing protein"
                     /protein_id="HEM5347764.1"
                     /translation="MQLPQDFIDKYNHLLGSEAQAFFESFEQDPISGFRTNPLKESQL
                     DFEQPIPNMTWSYYGKVSGKSPEHVTGLVYSQEPAAQVVGQIAAPEKGMKVLDLAAAP
                     GGKSTHLLSYLENTGLLVSNEISNKRAKILAENIERFGARNVVVTNESADRLAKVFPG
                     YFDMIVLDAPCSGEGMFRKDPDAIQYWSKHYPAQCASLQREILESALNMLAPGGQLIY
                     STCTWSPEENEEVVTWLLEQYDLELIDIPKINGMVEGVGYPEVARMYPHHFAGEGQFV
                     AKFRFLGEVSQKKLKPGKSNLNREQQALWKEFEQKHLRVQLDGLLQVFGDNLYLLPHG
                     LPDLSKVKIARNGLHLGTYKKKRFEPSFALGLALHSSEVENRVEISLEEFSSYTAGHT
                     IAVSKDLANGWYQVAVQGNGLGFAKIVSGTLKNGFPKGLRF"
     gene            12375..13244
                     /locus_tag="U1404_000792"
     CDS             12375..13244
                     /locus_tag="U1404_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS family protein"
                     /protein_id="HEM5347765.1"
                     /translation="MKKKQKLGIAALFLLSSMALSGCSSWIDRGESITAVGSTALQPL
                     VEAAADEFGSVNIGKSVNVQGGGSGTGLSQVQSGAVQIGNSDVFAEEKDGIDASKLVD
                     HQVAVAGLAVIVNEQVSVKDITTEDLRKIFTGEITNWKELGGKDLEISIINRAASSGS
                     RATFDSVIMDGQTATQSQEQDSNGMVKSIVAQTPGAISYLSFAYLDDSVKTIKLNGFE
                     PTAENVATNDWPIWSYEHMYTMGKATDLTEEFLDYMMSDEVQNGIVESMGYISINDMK
                     VVKSADGTVTEKE"
     gene            13247..14164
                     /gene="pstC"
                     /locus_tag="U1404_000793"
     CDS             13247..14164
                     /gene="pstC"
                     /locus_tag="U1404_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEM5347766.1"
                     /translation="MKNEQLAKELSSPSKNSRLEKFGKVITFLCLSLIVFIVAMILIF
                     VAQRGLSTFFVDGVSITDFLFGSKWEPSSKIFGALPMISGSFIVTILSAVVATPIAIG
                     AAVFMTEISPKRGAKILQPVIELLVGIPSVVYGFIGLQVVVPFVRSIFGGTGFGILSG
                     VFVLFVMILPTVTFMTVDSLRAVPRHYREASLAMGATRWQTIWRVILNAAKPGIFTAV
                     IFGMARAFGEALAIQMVVGNSAVIPTSLTTPAATLTSVLTMGIGNTVMGTVQNNVLWS
                     LALVLLLMSLIFNMIMKFITREGKKNYAR"
     gene            14154..15041
                     /gene="pstA"
                     /locus_tag="U1404_000794"
     CDS             14154..15041
                     /gene="pstA"
                     /locus_tag="U1404_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019316415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEM5347767.1"
                     /translation="MHAKKFDKLATGILYSIAGVIVVILTSLILYILLRGLPHVSWDF
                     LTSKSSSYKAGGGIGIQLYNSFFLLVVTLLISVPLSTGAGIYLAEYAKKGPLTNFIRT
                     CIEILSSLPSVVVGLFGYLIFVVQFEYGFSILSGALALTVFNLPQMTRNVEDSLRHVH
                     HTQREAGLALGLSRWETVLHVVIPEALPGIVTGIVLASGRIFGEAAALIYTAGQSAPA
                     LDWSNWNPLSVTSPISIFRQSETLAVHIWKVNSEGTIPDATQVSAGSAAILLVFILIF
                     NLSARYIGKKLHAKLTSAA"
     gene            15066..15869
                     /gene="pstB"
                     /locus_tag="U1404_000795"
     CDS             15066..15869
                     /gene="pstB"
                     /locus_tag="U1404_000795"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM5347768.1"
                     /translation="MADYNWNERHIITFSEENIALSTKDVHVYYGKNEAIKGIDMQFE
                     KNKITALIGPSGCGKSTYLRSLNRMNDTIDIAKVTGQILYEGIDINRPDMNVYEIRKH
                     IGMVFQRPNPFAKSIYRNITFAHERAGVKDKQVLDEIVETSLKQAALWDQVKDDLHKS
                     AFTLSGGQQQRLCIARAISVKPQILLMDEPASALDPIATMQLEETMFELKKDYTIIIV
                     THNMQQAARASDYTAFFYLGDLIEYDKTANVFQNAKLKSTSDYVSGHFG"
     gene            15881..16639
                     /gene="pstB"
                     /locus_tag="U1404_000796"
     CDS             15881..16639
                     /gene="pstB"
                     /locus_tag="U1404_000796"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM5347769.1"
                     /translation="MTSPILQVKDLSVYYNKKKALNNVSIDFYPNEITALIGPSGSGK
                     STLLRSINRMGDLNPEVTLTGAIDYNGKNIYSPRTDTVDLRKEIGMVFQQPNPFPMSI
                     YENVVYGLRINGIKDKQVLDEAVERSLIGASIWNEVKDRLHDSAVGLSGGQQQRVCVA
                     RVLATSPKIILLDEPTSALDPISAGKIEDTLYGLKDKYTMVLVTRSMQQASRISDRTG
                     FFLDGDLIEYNLTKEMFLNPANKETEDYITGKFG"
     gene            16668..17324
                     /gene="phoU"
                     /locus_tag="U1404_000797"
     CDS             16668..17324
                     /gene="phoU"
                     /locus_tag="U1404_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000946475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEM5347770.1"
                     /translation="MLRAQFEEELGKLHNQFYAMGNEVLAQINNAVRAFTTHDRELAK
                     EVIEADKKINAFEVKLEKKSLEIIALQQPVSTDLRRVITVLKATSDLERMGDHAVSVA
                     KAAIRMKGEVRIPVVEEEIKKMGREVCQLVEETLELYLGDADMERAYEVAARDEVVNE
                     FYSTIQELTTEEIKKNPESLVAGRDYYQVLTYLERVGDYAKNICEWVVYLRTGDITEL
                     "
BASE COUNT         5077 a         3189 c         4056 g         5023 t
ORIGIN      
        1 cattttttta aaattttttc agaaaaaaac gactttctat tgaaagccgt ttgaaatttt
       61 atttgtaagc gacgattcca aggatgacat caacagcttt ttccatggtt tccaagctga
      121 cgaactcgaa gcgaccgtgc atgttttcgc cacctgcgaa gatatttggt gttggaatgc
      181 ccatgaagga aatcttagag ccgtctgttc ctccgcgaac aggctcaatc agtggcttga
      241 tgcctagatt ttccatgacg tctttggcaa tgttgattgg agtcatatct ttttcgatga
      301 tttttttcat gttgtagtat tggtcgtgca ggttgacaat gacgcggggt gtgtcaaact
      361 tggcattcat tttctctgca atatccagca tgagctgttt gcgggcaagg aaatcttctt
      421 cctcgaagtc acggatgatg taggtggtag aagcagtatc aacactacct tccatattca
      481 tcaaatggaa gaaaccttca tagccttctg ttttctcagg gcggtctgct tctggaaggg
      541 cattgtggaa atcaatagcc atttggaagg cattgatcat ctggtcctta gcagatcctg
      601 ggtggacatt gcgtcctagg aaatcaatct tggcaccagc tgctgagaag gtttcgtact
      661 ggagttcgcc cagcggtcca ccgtccatgg tgtaggcaaa gtccacatcg aagtcttcca
      721 catcaaactt gtctgctccg acaccgattt cttcgtcagg accaaagccg acacggattt
      781 cacagtgttt gatgtcagga ttttggacta ggaattcaat cgcagtcatg atttctgcaa
      841 ttcctgactt gtcatcagag cctagcaagg tagtaccgtc agtggtaatc aaggtttgac
      901 cgtggtagtt ggcaagttgt gggaagtctt ttggatgcaa ttcatagcca gaagttccca
      961 aggcaattgg gttaccgtcg tagttttcga tgatctgcgg attgacacct tcagcgttga
     1021 aatcagccgt atccatgtgg gcgatgaagc caatcttacg tgtcaaactt gggtcgttgg
     1081 caggcagtgt tcccacagca aagccgtttg gtaggtagtg gacattctgt aagccgatgc
     1141 gtttcatttc aggcagaagg atattctgtg caaattcgac ttggttttgg gtagaaggtg
     1201 tggtggtcga attttcatct gagcgagtat tttctttgac atagactaaa aaacggtcta
     1261 agagagttgg gtatttcata gtatctcctt atttgttcaa aatgtgtttt tcaatggctt
     1321 tggcaacgcc gttgttttca ttggtgtctg tgatgtcctg ggcgatagcc ttgacctgct
     1381 cgttggcgtt gcccatggca ataccaagtc cagcaaattc aatcatttcc aggtcgttgt
     1441 tggcatctcc catagccatg atttcttctg ggaggatacc gaggcggtct gccagttttt
     1501 tcaaaccaga ggccttgctt gcaccgtttg gtaaaatttc caagagatag tcctgtgaac
     1561 gaacggtgga atagtgttgg ctgagtacag gattgtgttg attttcaaag gcatcaatat
     1621 gctctttttc accgacgaac atggcttcaa agaagcgatg ctgacctgac tgggcttctt
     1681 ttaaaacaat tggttgagga gtcattccta ctaaacctgc gtctaaatta acgcgtgcat
     1741 tggctttttc tgcaagaacg aagtagtctt cctcatcaaa aagagagatt tgcacatcat
     1801 cattttcaat aaaagtggaa agataatcaa tatcagagat agatagttct tcccagtcaa
     1861 tcaggctcca atcctttgtc gaatgcgttg aacaaccgtt attgacaatg ataaattctt
     1921 cctcagtgtc aaagccgagc tgctctacga aaggtttaac accagccaag ggccgaccag
     1981 tacaaagaac aatcttgacg cccgcttcaa cagcctgatg aatggcatca atctgtggct
     2041 gcatcagctc ttttttctcg tttaaaaggg ttccgtccat atcaagagcg attagtttaa
     2101 tcatataaac ctccttgttt tcaatacatc tagtatagca caaaatgaga aaggaatgat
     2161 tgaaatacta aactctgttc tatatgttaa aataaattag gtgacgaatg aaatatagaa
     2221 gtgttgcaaa aatgacaatg tccattatgt gttaagaaag tctaacattg ctaggggata
     2281 caaaacatgg agtatgagcc aggtaaacaa aggtaaggac tgtctatgaa agatgttata
     2341 aaaaataatt cagatttcaa gataccgttt ttcgatcctc tggaatgaat agcattcatg
     2401 cttaaagaat agagacaatg gaaatatcgg ttatagaccg gtgttttttg gtataattaa
     2461 tagaaggata gaataggagc atgatatgaa gattagtgtg aagaaagagg cggggcacta
     2521 cctgctcagc atttgctatt ctgtgtcggc tagtttgaca gaagcttggg acttgttggc
     2581 gacagacagt ggttttgccc actggtttcc acagttgaac attgtaggaa atacgctggt
     2641 ttttgaaatg gaaggattcc gtgaagttat ggatttactg gaatatcgaa aaaatgagaa
     2701 aattgcctac aggtgggatt cagcaacagt ttcatttaca ctgtctcagc tagaaaatca
     2761 gaccttaatt acttttgaag aacgaattcc agaagatttt ggtaatgaat ttgcgaatgc
     2821 tcaaaaagac atgacaggat ggttggtgcc aaatgaatgt atcaaaaaat tcttagaagg
     2881 tcaggagccg cctgtgtgtc aacccttgca ggaaaagtgg aggacttttc tggagcttga
     2941 attagaaggt ctgtgatctg aaaggaggct gttatgaaaa agtggtggga acaactgaaa
     3001 gaagaatatt atgaaacacg gtttgattct aatgaagatt ggatggaatg gtttatcaaa
     3061 cggaagatga cctggggctg gagatggccg actgctataa cgatttttgt cctttgggct
     3121 ctatcacttc cagatgctag aaatgtggtt cgtttctttt attttttatt gacgctggga
     3181 gtagctacgg ttttacataa attaatatct tatttgaaaa gaagaaagtg agagtatatg
     3241 catcaaatta cttgccccca ttgtgggacg gcctttcagg tcaatgaaac agaatatagt
     3301 cagcttttag cccaggtgcg tggtgcggag tttgacaagg aaatccacga ccgtttggag
     3361 cgggaacggg aattattaag ccagaaggct gaaaatgatt tgcaggctag attgagtgat
     3421 aaggataagg agattctgga actgaccgca aaacttgata aatttgctag tcagacggaa
     3481 ctggaaatca gctctgctat ttcccaaaaa gaccaagaaa tccaagagct taaggctcag
     3541 ttggggcaaa tcggtcttgc caaggacttg gagttgcagc aggcggtagc tcaggtggaa
     3601 aaagagcggg atgcggcaca aaatgctttg gttttgcagg aacaaaagca agagttagcc
     3661 ctagcgacca ctcgtcagga gtacgaagta cggctcaagg cggcggatga gcaggtggaa
     3721 ttttacaaaa atttcaaggc ccagcagtct actaaggcaa ttggagagag cttggagcaa
     3781 tttgctgagg cggagtttaa caaggttcgt tcctatgctt ttccacatgc caaatttgcg
     3841 aaggacaacg aagtatcagc gtccggttca aaaggagact tcatcttccg tgattttgac
     3901 gagtcgggct tggaatttat ttccatcatg ttcgaaatga aaaacgaggc agatacgacc
     3961 aagaccaagc ataaaaacgc tgatttcttt aaggagttgg ataaggaccg tcgggagaaa
     4021 aaatgcgaat atgctgtatt agtcagcatg ctagaggcgg acaatgacta ttacaataca
     4081 gggattgtgg atgttagtca tgaatatgag aagatgtatg ttattcgacc acagttcttt
     4141 atccaattaa tcggaatttt acgaaatgct gcgctcaata gtctgcaata tcagcaggag
     4201 ttagccttgg ttaaggagca gaatattgat attactcatt ttgaagaaga tttggaaatt
     4261 ttcaagaatg cttttgccaa aaactatcaa tcggccagca acaatttcca aaaagctatt
     4321 gatgaaatcg ataaggcaat caagcgaatg gaggctgtca aggcagccct gaccaccagc
     4381 gaaaaccagc ttcgcctagc caataataaa ctagacgatg tctccgtcaa aaaactaacc
     4441 cgcaataacc caaccatgaa agccaagttt gaggcgttga gggaggagta ggatgattgt
     4501 tccgttacaa tttgagcata tacttcaact tgatgaggcc ttccagaagc aaggttggcc
     4561 ctcaagcaaa gagattttaa ccaactattt aagggaacaa gaaaagggag aacgtatcgt
     4621 cctagttgct gaagaaacgg gagtttgtaa aggttatatc accttgatta agcaagtgaa
     4681 ggaggggccg ttttaccaat ctggaatacc tgaaattgct gatttcaatg tttttgaaga
     4741 ctttcaaaat caggggatag gttggcaatt attagatgct atctgtcagc ttgcctcaga
     4801 attcacggat atagtaggta ttggagttgg tttgaatgca aattatggaa aggctcaacg
     4861 gctctatgta aaacatggtt tcataccaga cggaagcggt gtctggtacc gagggcgctc
     4921 tttgccagta ggtgccaaag cctataacga tgatgaattg gccttgtatt ttacaaaaaa
     4981 attatagagg aaaagtaaaa tgaacaccat cgacctaaat ctgcctgttg cagagattat
     5041 caaccagcac ccagaagtca aggatattct ggtggagctt ggtttcaagc ctttggcaaa
     5101 tccagctatg ctcaacacag ttggtaaggt gaccaatctg aagacaggct ccaagatgac
     5161 caagattccg ttagaccgta ttcaacaggt cttggaatgc aacggctatg aggtaatagg
     5221 aggagaataa tgacggaaca acggattgac attttgaaga atattctctt ggacctgcac
     5281 aatggtgcca gtccagagtc tgttcaggac cagtttaatc agcatttcac gggagtttct
     5341 gccttggaaa tctccatgat ggagcatgaa ctcatgtcca gcgacacggg tatcactttt
     5401 gaagacgtca tgaacctttg caatatccac gccaaccttt tcaaaggagc cattgcggat
     5461 gtggaagtgg cggatatgga tcaggaagga caccccgtct atgtcttcaa gcaggaaaat
     5521 ctagcactgc gggcggctct tttacgcatc cgacgtatca ttgaccagca tgagcagaca
     5581 gaggatgcgg agctgaaaga ccagctcctg caaggtttga cacgccagtt tggcctcctc
     5641 ggtcaatttg aaaatcacta tacccgcaag gaaaaggtct tctttccgat tatggagcgg
     5701 tacggtcatg atgcaccgcc caaggttatg tggggtgtgg acgacgagat tcgcgatctc
     5761 ttcaagacgg cccgcaaggc acttgaagga ggtgacctag ctgcgacacg tgctcacttt
     5821 gaaaacttcg ccaaggaatt tgaagagatg attttcaagg aggaggccat tctcctcatg
     5881 attctgctgg agattttcac ccaggacgac tggctccaag tggcagcaga cagcgatgcc
     5941 tacggctacg ccattgttaa gccgacagcc aagtgggtac ctcatcggga ggtttttgga
     6001 gaaatagcag agcaggaagt agatagcatt tctccgcagc cagctagccc aaaccagcag
     6061 attatcgaca cgccagaagg ccagtttacc attaccttta cacccaagga aaagtcagaa
     6121 actgttcagg acaggactag tccgcagacc ttcggcaatg gttatttatc tgttgagcaa
     6181 gccaatctta tcctcaatca tttaccgctg gaattaacct ttgtcaacaa ggacgacatt
     6241 ttccagtact acaatgacag ccatcctgtt gaagacatga ttttcaaacg aacaccaagc
     6301 cagattggac gccatgtgga gctctgccat cctcccaaaa tagtggacaa ggtcaagaag
     6361 atttttgaat tgctccgcac agggcaaaaa gaccaggtca ccatgtggtt caagtccgag
     6421 agcatgggca agtttgtcta tgtggtctat aaggcagtgc gtgatgacca aggagagttt
     6481 caaggcgttt tggagtatgt tcaggatatt caaccatttt ttgagattga tagcgatttt
     6541 catcgggaaa tttagtttag tcatttttga aaggaaatta agctgttgga ttggccgacc
     6601 ataaaaattg gtgacgaagg ctattatgat gccccattga tattttctta tggctatgat
     6661 gaagaggctg aggaagggat tgatgaagca gtaacattcg atgcagtacc ttctgaaacc
     6721 atgcgacgca ttcataagga actagagaat ttgatagata caacattcgg tagctatcgt
     6781 ttctatgatg actgattgat atcggaccgc ccacaagagc ggtcctttgt gttataatgg
     6841 aaaaatgatt tcaggaatta ttaacgtaaa aaaagaggca ggtatgacct cgcatgatgt
     6901 tgtttttaag ctccgcaaga ttttgcagga gaagaagatt ggacatggtg ggaccttgga
     6961 tcccgatgtg acaggcgttc tgcccatcgc agtcggtaag gccacgcgta tgattgagta
     7021 catgcaggaa gagggaaaga tttacgaggg ggagattacc ctcggcttct caaccacgac
     7081 cgaagattcg tcgggcgacc tcgtcgagcg gacaccggtt ttggacatag cagagcaggc
     7141 agttgatgag gctatgacca gtttcgtcgg tactattacc cagattccgc ctatgtactc
     7201 tgctgtcaaa gtaaacggtc gcaaactata cgaatacgca cggacgggtg aagaagttga
     7261 gcgtcctcaa cgccaaattg agatttacag ttttgaacgg actagcccga ttgaactagt
     7321 agatgactgt gcacgtttta ccttccgagt tcgctgtggt aagggcacct atgtccgtac
     7381 cctgtctgtt gacctagggg ctaagttggg ctatgccagc catatgtcca agttggaacg
     7441 aacaggatca gctggaatgg acctagcgga tgccttgact ttagaagaaa tttcttcgct
     7501 ggtagctgaa aatgattttt cattcctcca acctattgaa cgtggcatcg gggatttacc
     7561 tgttgtagaa ttgaaagaag agcaggtgca agatgctaca tttggtcgat ttgtagaatt
     7621 gaatgcagaa gcagagcgct tagcaggctt tcatgatggt cagttgattg ctatttttga
     7681 aaaacgcgac cagctgtata aaccgagcaa ggttttggtc taagaaattt ctcaataact
     7741 gtgataaaat agaaaacatg aacattagaa caattaaaca ttatagtgaa ttgaatcaag
     7801 aggagccgac tgttttggta ttaggctatt ttgatgggat tcatttgggg cataaggccc
     7861 tcttagaccg tgctagacaa gttgcagatg aaaaaggatt gtcagtgacc gtactgactt
     7921 ttccagagac ccctcgtctg gctttttctc gctttagccc agaactttta ctgcatttga
     7981 ccagtcaaga tcagcgttat cacttgttgg agcaatacgg tgtagaccag ctggttttga
     8041 cagattttac cagtgagttt gcaagcaata ctcctcagca gtttttagaa cgctacatca
     8101 aggggttgaa cgcacaagtc ttagtggcag gtttcgatta tcatttcgga aattgcagag
     8161 cagatgtgac agacttgaca gagttatttg atggtcaggt agaaattgta agtgaagtaa
     8221 gcctgggcgg agagaaagtt tcttcaactc gcattcgtca ggctatccag tcaggggagg
     8281 tctctctagc taatcaactt ttaggttatc catttatgac ggagggaatt gttgttcatg
     8341 gagatgccag agggcgcact attggttatc caactgcaaa tctagctcct tttgaccgtg
     8401 tccatttacc atctgaggga gtctacgtcg ctgatgtcga agtagatgga aaacgctatc
     8461 gagctatgac aagcgttggg aaaaatgtga cctttgatgg aacggagatg cggatagaag
     8521 cccatatttt tgggtttcac cgctttatct acggagaaaa aataactatt ttttggcttg
     8581 aaaaaattcg agatatggtc aaatttgatg gaattgaagg attgatggag cagatgaaat
     8641 ctgatgagaa atttgccttg caatggggga aatatgctta aacgattgat tcgtcatcct
     8701 ttttatgaga aggctatgac ctacatagct gtagtctatg tatttcttat cgtacttgaa
     8761 ttaatggatg ctagtattgc caattctagt gggtatcggg tactagactt gctcttatgg
     8821 tttatttttg tttgcgatta ttttgctcag ctttattatg cggatgacat acttgaatat
     8881 gtacagggac atatcttgga attaattgcc attattccat ttgattcatt cttcagtttt
     8941 cttcgcttgg gaagacttgc acgactcttc agattggtca aagtaacgag aatatttgcc
     9001 ctgtctaatc gattctggga tacaatcaac aagcttttgc ataccaacag tttatccaaa
     9061 gtgttgatgt taaatatctc agcagtgcta gtttcaagtg tcttattatc agtaattgaa
     9121 ggaaaatcat tcttcgatgc actttggtgg tccattgtaa cgatgacaac tgtagggtat
     9181 ggagatattg tcccccaaga tacgatttct aaaattatag ccatcctctt gatgttggtt
     9241 ggtatctgta cttttggtat ggttacctcc acaataactc gttttttctc tgaaacagag
     9301 cgagaaacga agttggatat cttgatggca aaaattgatg aacaaaacga aacattatta
     9361 cgcttagaga aaaaaataga atctttagaa aaattaggtg aattacaggg aagagattag
     9421 atttactatt gaaaactctt ttaagttaga gtataataat aagaagaaaa atgtttttag
     9481 aggggatgga agacatggtt actttatttt tgtcaccgag ttgtaccagt tgtcgtaaag
     9541 ctcgtgcttg gctgacaagt cacgaagtcc cttttattga gcacaatatt atgactagcc
     9601 ctctaactgc tgaggaatta aagaacattt tagcattgac agaaaatgga acagatgact
     9661 tgatttctac ccgttcaaaa gtttttcaga aactagatat tgatgttgat gagctttctg
     9721 tgaagcagct tattgggtta atcgaaacct atccgagtct cttacggcgt ccgattattt
     9781 tggatgagaa gcggatgcag attggtttta acgaagatga aattcgtgca tttcttccgc
     9841 gcaagtatcg caaacaagag ctaaaaaatg ctacattgag agcagaaata ggataagaaa
     9901 gataaaagat atgaacaaaa attattcata tccacttgat ttttcgtgga gcacagagga
     9961 gatttcctcc gtgctttctt ttttgaatca ggtggaggca gcttatgaaa aaggagcaga
    10021 tgcggtagct atattagcta gttataaaag cttcaaagat gttgttaaaa gtaagggaca
    10081 ggaacgtcaa attgatcgtg actttgaagc agtttctggt tattcaacct atcgagttgt
    10141 taaagctgct cgagataagg ggaaaggagt tattcgtttt ggaaactaag tatcactttg
    10201 cccaaacgat tgtcctggag gctggaaatt ttctccgaca gcatttacat gatgatcttc
    10261 agattgaaga aaaaggtgac tttacagact tggtaacaca ccttgataaa caagtgcaag
    10321 aaatgttgac tcaacagatt caatctcgct atcaaggtga tgggatttta ggcgaggaag
    10381 gtggggacgt ttcttctatt catgagggaa atgtttgggt tattgatcca attgatggca
    10441 ccacaaattt tattgctcag aaaactgatt ttgccattat gattgcctat tttgaaaatg
    10501 gagtaggaaa gtttggtatc atttatgatg tcatgcgaga caaacttttc catggaggag
    10561 attcattccc tgtttattgc aatcaagaac gtttaaagaa accagagctg cgccctcttc
    10621 gccagagttt gataggaatc aatgcaaagt tgtacgcagg caatgcacat ggagtggcag
    10681 aattagcaaa tcaaagttta ggtacaagat ctgtaggaag cgctgggatt ggtttcaccc
    10741 atgttctgga aggaagatta tttgcctatg cttcttatct gtgtccatgg gactacgcag
    10801 cagccagtat tattggttcc tctttaggct tagtcatgtt aagttttgag ggtccgagtc
    10861 tgacctatga taagcgagag tttgtcatgc tagtatcaga atcccatctt aaggaagtga
    10921 aggggtatat attctaatgc aattaccaca ggattttata gataaatata atcatttgct
    10981 tggtagtgaa gcccaagcat tttttgagag ttttgaacaa gacccaatct caggatttcg
    11041 cacaaatcct cttaaagaaa gccaattgga ctttgagcaa ccaatcccta atatgacttg
    11101 gtcatactat ggtaaggtct caggaaagtc tccagaacat gtaactggct tagtctactc
    11161 acaagagcca gctgcacagg ttgtaggtca gattgcagcc ccggaaaaag ggatgaaagt
    11221 attggacttg gcagcggcgc caggaggaaa gtctacccac ttactttcat acttagaaaa
    11281 tacggggctc ttggttagta atgaaatttc taacaaacga gcaaaaatat tggctgaaaa
    11341 tattgagcgt ttcggggcga gaaatgtagt cgtgaccaat gaatctgccg atcgtttggc
    11401 caaggtcttt ccaggatatt tcgatatgat tgtcctagac gctccctgtt caggtgaagg
    11461 gatgtttcga aaagaccccg atgcgattca atattggtcc aaacattatc cagcacaatg
    11521 tgcaagctta cagcgtgaaa ttttagaatc ggccttgaat atgttggctc caggtggtca
    11581 attgatttat tctacttgca cttggtcacc agaggaaaat gaagaagtag tgacgtggct
    11641 cttagaacag tatgatttgg aactaataga cattcctaaa atcaatggaa tggtagaagg
    11701 agtcggttat ccagaagttg ctcgtatgta tccccaccat tttgcaggag aaggtcagtt
    11761 cgttgccaaa tttagatttc taggagaagt cagtcagaaa aaattaaaac caggaaaatc
    11821 caatttgaat agagaacagc aagctctctg gaaagaattt gaacagaagc atttaagggt
    11881 tcaattggat ggtttactgc aggtttttgg cgacaatctc tacctactgc cacacggcct
    11941 tcctgatttg tcaaaagtaa agattgctcg aaatggtctt cacttgggga cgtataagaa
    12001 aaaaagattt gaaccaagtt ttgctttagg tctagcactc catagttcgg aggttgaaaa
    12061 tcgagtggaa atcagcttag aagaattctc gtcctatact gcaggacata ccatagctgt
    12121 gtccaaggat ttagctaatg gctggtatca ggtagcagtc caggggaacg gtcttggttt
    12181 cgcaaaaatt gtatctggaa cgcttaaaaa cggctttcca aaagggttga gattttaaaa
    12241 taaatcagca aatttttttg caacttgtct ttttatatga tatagtggat gagtggaaat
    12301 atcttgtaaa ttctatgtaa aatacagagt taattttagg agattccact gaaaaatgta
    12361 aaggaaaaaa cgaaatgaaa aaaaagcaga agcttggaat tgcagctttg tttcttttga
    12421 gtagtatggc tctttctggt tgttcttctt ggatcgatcg aggagagtct attacagccg
    12481 taggttcgac ggcgcttcaa ccacttgttg aggcagcagc agatgaattt ggtagtgtca
    12541 atatcggtaa atccgtcaac gttcagggtg gtggatcagg tactggcttg tcacaagttc
    12601 agtctggagc tgttcagatt ggtaactctg acgtatttgc tgaggaaaaa gatggtattg
    12661 atgcaagtaa acttgttgac catcaagtag cagtagctgg tttggccgtt attgtaaatg
    12721 agcaggtatc ggttaaagat attactacag aagatctgcg taaaattttt actggtgaga
    12781 ttaccaactg gaaagaacta ggtggtaagg atttggaaat ttcaatcatt aaccgtgcag
    12841 ctagttcagg ttcacgtgcg acctttgata gtgttatcat ggatggacaa accgcaactc
    12901 agagtcaaga acaagattct aacggtatgg taaaatctat tgttgctcag acaccaggtg
    12961 caatttccta cctatcattt gcttatctag atgattccgt taaaacaatt aagttaaacg
    13021 gttttgaacc aactgctgaa aatgtagcaa caaatgattg gccaatttgg tcctatgagc
    13081 atatgtatac gatgggaaaa gcgactgatt tgacagaaga atttttagat tacatgatgt
    13141 cagatgaagt tcaaaatggt atcgttgaaa gtatgggata catttctatc aacgatatga
    13201 aagttgtgaa aagtgctgat ggcacggtga ctgagaagga gtaagcatga aaaacgaaca
    13261 actagcaaaa gagttatcgt ctccatctaa aaattctcga ttagagaagt ttggtaaggt
    13321 aattacattc ctttgtctat cattgattgt ctttattgtt gcaatgattt tgattttcgt
    13381 tgcgcagcgt ggattatcga ctttctttgt tgacggtgtg agcatcactg atttcttatt
    13441 tggaagcaag tgggaaccaa gctcgaaaat atttggtgcc ctgccaatga tttcaggttc
    13501 tttcattgtt acgattctgt cagctgttgt tgcgacccct atcgcaatcg gtgcagcagt
    13561 ctttatgaca gaaatatcac caaaacgtgg tgcaaaaatc ttacaacctg ttatcgaact
    13621 tttggttggt attccatcgg ttgtatatgg tttcattggt ttgcaagtag ttgtaccatt
    13681 tgtacgttca atcttcggtg gaacaggttt cggtatcttg tcgggtgtat ttgtactttt
    13741 cgttatgatt ttgccaacag taacctttat gacggttgat agtttgcgtg cagtacctcg
    13801 tcactaccgc gaagcaagtt tggctatggg agctacccgc tggcagacga tttggcgtgt
    13861 tattttgaac gcggctaagc caggtatttt tacggccgtt atctttggta tggcgcgtgc
    13921 ctttggtgaa gccttggcga ttcagatggt agttggtaac tcagcggtta tcccgacttc
    13981 cttgacaacg ccagcagcga ctttgacttc tgttttgaca atgggtatcg gtaatacggt
    14041 tatgggaact gttcagaaca acgtcctatg gtccttggcc ctagtcttgc tcttgatgag
    14101 ccttatcttt aacatgatta tgaaatttat tacgagagag ggtaagaaaa actatgcacg
    14161 ctaaaaaatt tgataaattg gcgactggta ttctttactc aatcgctggt gtgattgtcg
    14221 ttatcttaac gtcactgatt ctttacatct tgctacgtgg tctgccacat gtaagctggg
    14281 attttttgac aagtaaatct tcatcttaca aagctggcgg tggtattgga attcagctct
    14341 acaactcatt cttcctattg gttgtaacgc tcttaatttc tgttcctttg tcaaccggtg
    14401 caggtattta tttggctgaa tatgctaaaa aaggtccatt gactaacttt atccgtacct
    14461 gtattgagat tttgtcatcc ctaccgtccg ttgtcgttgg tttgtttggt tacttgattt
    14521 tcgttgttca gtttgagtac ggtttttcta tcttatcagg tgccttggct cttacagtct
    14581 tcaacttacc acagatgacg cgtaacgtag aggacagcct tcgtcacgtt caccatacac
    14641 aacgtgaagc aggattggct cttggtctat cacgttggga aactgttctc catgttgtta
    14701 ttccagaagc acttccaggg attgtaacag gtatcgtctt ggcatctggt cgtatcttcg
    14761 gtgaggcagc agctcttatc tacacggctg gtcagtcagc tccagctctt gactggtcaa
    14821 actggaatcc attgagtgtt actagtccga tttctatctt ccgtcaatca gaaacccttg
    14881 cggttcatat ctggaaggta aacagcgaag gtacaatccc agatgcaacc caagtttctg
    14941 ctggttcagc agctattctc ttggtcttca tcttgatttt caacctttct gcacgttata
    15001 ttggtaagaa acttcatgcg aaactgactt cagcagccta gaagtctgac ttataaggag
    15061 aaaaaatggc agattacaac tggaatgaac gccatatcat tactttttca gaggagaata
    15121 tcgccctttc aacaaaagat gttcatgttt actatggtaa aaatgaagcg atcaagggca
    15181 ttgatatgca gttcgaaaaa aataaaatta cagccttgat tggaccatca gggtgtggga
    15241 aatcaaccta tcttcgcagt cttaatcgta tgaatgatac tattgatatt gctaaggtaa
    15301 ccggtcaaat tctttatgaa ggaatcgaca tcaatagacc agatatgaac gtttacgaaa
    15361 ttcgtaagca tatcggaatg gtattccaac gtcccaaccc atttgcaaaa tctatttacc
    15421 gtaacatcac attcgcacat gaacgtgcag gcgtgaaaga taagcaggtt ttggatgaga
    15481 ttgttgaaac ttctctgaaa caagcagccc tttgggatca ggtaaaagat gacttgcaca
    15541 agtcagcctt taccttatca ggtggacagc aacagcgttt gtgtattgca cgagctatct
    15601 ctgtaaaacc acaaatcttg cttatggatg agcctgcatc agccttggac ccgattgcga
    15661 ctatgcagtt agaagaaact atgtttgaat tgaagaagga ctacaccatt atcattgtta
    15721 cgcacaatat gcaacaagca gctcgtgcaa gtgattacac agctttcttc tatctgggtg
    15781 acttgattga atatgataag acagcaaacg tcttccagaa tgcaaaactc aagtcaacta
    15841 gtgactacgt ttcaggacat tttggataga aagggaacaa atgacatcac ctattttaca
    15901 agtaaaagat ttgtctgttt actataacaa gaaaaaagcc ttgaataatg tgtcaatcga
    15961 tttctatcca aatgaaatta ctgctttgat tggaccatct ggttctggta agtcaaccct
    16021 cttgcgttct attaaccgta tgggagattt aaacccagag gtaacattga caggtgcgat
    16081 tgattacaac ggaaagaaca tatacagtcc tcgtacggat actgttgatc ttcgtaagga
    16141 aatcggtatg gtattccaac aaccaaaccc attcccgatg tctatctacg agaatgttgt
    16201 ttatggttta cgtattaacg gtatcaagga caagcaggtc ttggacgaag cagttgagcg
    16261 ttccttgatt ggtgcttcta tttggaatga agtgaaagat cgcttgcatg actcagcagt
    16321 tggactttca ggtggtcagc agcaacgtgt atgtgtggcc cgtgtattgg caacaagccc
    16381 aaaaattatt ttgttggatg agccaacgtc agcccttgac ccaatctcag ctggtaaaat
    16441 tgaggacaca ctttatggtc tgaaagataa gtatacaatg gtgctagtaa cacgttctat
    16501 gcaacaggca tcacgtattt cagatcgaac aggtttcttc cttgatggcg atttgataga
    16561 atacaatttg acaaaagaaa tgttcttgaa tcctgccaat aaagaaacag aagactacat
    16621 tacaggtaag ttcggctaag gcctataaga aaaagaaaga ggttcacatg ttaagagctc
    16681 aatttgaaga ggaattagga aaacttcata accaatttta cgccatggga aatgaagtat
    16741 tggctcagat taataatgct gttcgtgcct ttacaactca tgatcgtgaa ttagcaaaag
    16801 aagtcattga agcagataag aaaattaatg ctttcgaagt gaaattagag aaaaaatcac
    16861 ttgaaatcat tgctctccaa caacctgtct caacagatct tcgtcgcgtt atcacagtct
    16921 taaaagcaac tagtgatttg gagcgtatgg gagaccatgc agtctcagtt gctaaagcag
    16981 ctatccgtat gaagggagaa gttcgcatcc cagttgttga agaagaaatc aagaaaatgg
    17041 gacgtgaagt ttgtcaatta gtagaagaaa ctttggaact ctacttaggt gatgctgata
    17101 tggagcgcgc ttatgaagta gcagcacgtg atgaggttgt caatgaattc tattcaacta
    17161 ttcaagaatt gacaacggaa gaaatcaaga agaatccaga atccttggtt gctggtcgcg
    17221 actattacca agttttaacc tacttggaac gtgtcggtga ttatgctaaa aatatttgtg
    17281 agtgggttgt ttatctacgc acaggtgata ttacagagtt gtaattcaga agtccgagag
    17341 ggctt
//
LOCUS       DASGCC010000035        16771 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.035, whole genome shotgun sequence.
ACCESSION   DASGCC010000035 DASGCC010000000
VERSION     DASGCC010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16771
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.035"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            23..1573
                     /gene="guaA"
                     /locus_tag="U1404_000798"
     CDS             23..1573
                     /gene="guaA"
                     /locus_tag="U1404_000798"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEM5347771.1"
                     /translation="MTKQDVQKIIVLDYGSQYNQLISRRIREFGVFSELKNHKITAEE
                     VRAINPIGIVLSGGPNSVYAENAFDIDPEIFELGIPILGICYGMQLITHKLGGKVVPA
                     GEAGNREYGQSNLQLKTESALFAGTPEEQLVLMSHGDAVTEIPADFHLVGLSADCPYA
                     AIENTERRIYGIQFHPEVRHSVYGNDILKNFAFGICGAKGDWTMENFIETEIEKIRQT
                     VGDKKVLLGLSGGVDSSVVGVLLQRAIGDQLTCIFVDHGLLRKNEGDQVMEMLGGKFG
                     LNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYVFDDEASKLTDVEFLAQGTLYTD
                     IIESGTDTAETIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTALGMPDEVVWRQ
                     PFPGPGLAIRVMGEITEEKLQTVRESDAILREEIAKAGLDRDVWQYFTVNTGVRSVGV
                     MGDGRTYDYTIAIRAITSVDGMTADFAKLPWDVLQKISVRIVNEVDHVNRIVYDITSK
                     PPATVEWE"
     gene            complement(1735..2784)
                     /gene="mcrC"
                     /locus_tag="U1404_000799"
     CDS             complement(1735..2784)
                     /gene="mcrC"
                     /locus_tag="U1404_000799"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methylcytosine-specific restriction
                     endonuclease system specificity protein McrC"
                     /protein_id="HEM5347772.1"
                     /translation="MIPVQNIYYMLSYAFKILHKQEYKRIATEEFKNAADLLAEIMII
                     SLSIQVKRGLGREYRSQTESLSALKGKINISESLTPPNWRRKQLVCQYDDFSLDSRMN
                     RIIKASIEILLKADISRDRKKKLRKLLVFFGEVSKINLHSINWNLQYNRNNQSYQLLM
                     SICYLVVNGLIHTEREGNKKLMNFLDERRESLLYEKFILGYYKKHYPQIQVTASQIPW
                     ALDDGFGEMLPIMQSDIYLKYKDTILIIDAKYYSSNTQIRFDKRTLHSNNLYQIFTYV
                     KNQAYRLSDSNDTVAGMLLYAKTDIDIQPNQVYQMHGNQISVKNLDLNLQFASIAEQL
                     DDIITSHFVSPPKRY"
     gene            complement(2781..4478)
                     /locus_tag="U1404_000800"
     CDS             complement(2781..4478)
                     /locus_tag="U1404_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM5347773.1"
                     /translation="MDEQNQFNWVNFYKEFAWKLLDYKDNRAELVEKVKAIYTKTKIH
                     MPTLEKDNHLIDIDPFTIFGLFNKQIKEENRIKILTAIAELFNLQTEIPSSFESIPVL
                     MNQNATFYYFIGDRDEKDIDDLWELFIAALTYSKEPTAEKKEKFSHYFDLAINKKGNG
                     NSKITMALYWIAPDFFLNLDSRNKWYVYESGEIPTDVIKKLPKMKSKISADDYFYISD
                     SMHHYLNSAESKLKDFKELSSMAWKYSKQINQEEKERSAGAISPLADETDTGNEIGSE
                     EVVEDSYTKNHFLSEVYMTEEEYDQLTSILQMKKNIILQGAPGVGKTFVAERLAFSLM
                     GKPDLERVMTIQFHQSYSYEDFIMGFRPSTSGFELRRGAFYTFCKKAESDKSHDYFFI
                     IDEINRGNLSKIFGELFMLIENDKRGKSLQLLYSDEQFSIPENLYIIGMMNTADRSLA
                     LLDYALRRRFAFFDIKPGFSTAGFKDYQTNLKNEKFDRLISCIEKLNQAISTEEVLGD
                     SFCIGHSYFCGLSAEVLDQGLLEAIVEYELIPLLKEYWFDEPTKIHDWSSKLRSAIQ"
     gene            4679..5467
                     /locus_tag="U1404_000801"
     CDS             4679..5467
                     /locus_tag="U1404_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347774.1"
                     /translation="MAVLKYSKARLLVLLIATGLSCIGIYWLGKEQNRLLNEQCHALN
                     IRIINDLGAKIDAIGGPQNPRIIGFFQQDDTTAISQRIGTASEEELKIAKPDNLFQKE
                     WIVLYPQTRSSPFENTSAYAVMKTSIKADWLHVTTSSETELDIFYEKADESLLTLEDL
                     VQDKESFHATLKTILVSAKNEAEIQVQKDILEMFESDDWSAIPFAYTEKSLILEKAVI
                     SVSAFVDSLNPYYFSEQTLADLRLSEESRQALEDSVDKTIITYP"
     gene            5495..6442
                     /locus_tag="U1404_000802"
     CDS             5495..6442
                     /locus_tag="U1404_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347775.1"
                     /translation="MDVFPSFFIFLFNKLNIFVDLKNIFCYTCVMKTSTLGKLLELPN
                     FHHFYTVPIRENTESSGNYIIVFEQDKQPVFVDLKNETGHTREVRFASHFDSAGLLVG
                     LGAIPINYWPTCQILGVQKNNNRRGLSLSSLMDGYGRLPIFKEMAERYRARGQSTIYD
                     PYRYSYTIDEKKVIKDNQLTLIPKKEYEKIKDFHPFLQTKHGNVYAVPCFYQDRKRNQ
                     TIKIYIIGWYFYEKQLKISWKPSHSRKSRWRSSLVSVDKLSDRFFFQGELYKKGTYPV
                     FLEDLTIKNKAYQHRLDREFAAFLSIIEEQKRRAQLRVK"
     gene            complement(6463..6795)
                     /locus_tag="U1404_000803"
     CDS             complement(6463..6795)
                     /locus_tag="U1404_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
                     /protein_id="HEM5347776.1"
                     /translation="MILNVQDFHLAAFAYYDGLDVIDQLKPGTPVQLVGEPSNPHDSE
                     AVAIFYQGTKLGYIPSDKNSLISRLIYFGHGDILEARIQMSNTENHPDRQFRVVVKLK
                     DNRKNDSR"
     gene            complement(6792..7544)
                     /locus_tag="U1404_000804"
     CDS             complement(6792..7544)
                     /locus_tag="U1404_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor 1 (IF-1)"
                     /protein_id="HEM5347777.1"
                     /translation="MKRKYLALALGLLTIMSLSACQTEKKGSSASTSTADTQVSNANT
                     STSSTIQREISLSSMDIDALMQGNYDSILGTWQNSQGNSLVFNSKGLVADSQSLLGRG
                     KITDGIFETGYVDATIGDVTLLMIPKGTQANTTETDTTDSTRDRMIVISQETTADVVD
                     VYYRLTNSATSGIDPLKNTETGVQLDSGPKTIDYANSILGENNWRVIEGNYTRTESIP
                     YNILEGDDNARYTIYQNGVIINADYQIVYQPQ"
     gene            complement(7561..8319)
                     /locus_tag="U1404_000805"
     CDS             complement(7561..8319)
                     /locus_tag="U1404_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5347778.1"
                     /translation="MKRNVLITGASSGIGKAIAYVFAANGDNIIITGRRLDKLEEIKQ
                     DIEKQYHVQVSVHSFDITNMEQTIVNCQKILEEVGQIHILVNNAGLALGLDKFQDYDL
                     TDMMTMIDTNIKGLLTVTRQLLPQMVENNEGHIINIGSTAGIYAYAGAAVYAATKSAV
                     KVLSDGIRIDTIDKNIKVTTLQPGIVETDFSQVRFHGDKERAATVYQGIDALQANDIA
                     SCTLFVANQPAHVQISDITIMATKQATGFTIHRD"
     gene            complement(8420..9019)
                     /locus_tag="U1404_000806"
     CDS             complement(8420..9019)
                     /locus_tag="U1404_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme family protein"
                     /protein_id="HEM5347779.1"
                     /translation="MKKLIRTLILLLLIFLGYKFYQTYSAVKQVMTYQTMVQEVLAEN
                     DTPANEELVLAMIYTETKGQEADVMQSSESATGYANTITDSRESIRQGIIYLTENLRL
                     AEEKGVEVWTAVQAYNFGPAYIDYIAEHGGEHTLSLAKEYSRTVVAPSLGNTTEETYT
                     YFHPLALLNGGKLYVNGGNIYYARQVRFNMHLMRLINLF"
     gene            complement(9020..9994)
                     /locus_tag="U1404_000807"
     CDS             complement(9020..9994)
                     /locus_tag="U1404_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HEM5347780.1"
                     /translation="MDIFVKKAIIHQFSPDDTELVLSDQLLTVSPKIEEYLRKKIERV
                     FSDEAKTGQFNPDNPFLDYLDGDLLTNSVKIANLWKEAFSISENLKTNDLIFIEFERN
                     GVEHFTFLRISLRENLAHVGLESGSPLKITQNNLPGAGSAPDEALIVNLQTRKYHLIE
                     KRIKHNGSFLNYFSDNLLQVTPAISAKKSIKAVEQTAQKIADNFHQGDFQFQSKIKSA
                     IFNNLEEDNELSPEKLADQLFDNNLTARLNFVDQLKEVIPDKISFDEIDSSRQLKKFE
                     NQKLSLSNGIELIVPNAIYEDAESVEFIQNDNGTYSILIKNIEDIKSK"
     gene            complement(9994..11253)
                     /locus_tag="U1404_000808"
     CDS             complement(9994..11253)
                     /locus_tag="U1404_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEM5347781.1"
                     /translation="MIFDKVNYKEFDKEVWEAIQAEEKRQQNNIELIASENVVSKAVM
                     AAQGSILTNKYAEGYPGRRYYGGTECVDVVESLAIERAKEIFGAKFANVQPHSGSQAN
                     CAAYMALIEPGDTVMGMDLAAGGHLTHGASVSFSGQTYNFVAYNVDEETGLLDYDAIL
                     KQAKEVQPKLIVAGASAYARTIDFAKFREIADAVGAKLMVDMAHIAGLVAAGLHPNPV
                     PHAHITTTTTHKTLRGPRGGLILTNDEELIKKINSAIFPGIQGGPLEHVIAAKAVSFK
                     EVLDPDFKDYAQKVIENSKAMAEVFLANPNFKVITGGTDNHLFLVDVTKVVENGKVAQ
                     HLLDEVNITLNKNSIPYEKLSPFKTSGIRIGSAAITARGFGVEEARKVAQLTIKALEN
                     AENEKALEEVRQEVRALTDQFPLYEGL"
     gene            complement(11277..11708)
                     /locus_tag="U1404_000809"
     CDS             complement(11277..11708)
                     /locus_tag="U1404_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347782.1"
                     /translation="MIRPIEKGDLVVIREINAQSLGYDCSLEQTERQFFRCTSTLGHI
                     LLVYIDDISGAVQGYIHAQVYESLYSDTGLNILGLAVLPGHQVQGIGASLLKAVEQIA
                     QKEGYHFIRLNSAESRLQAHLFYEKNGYHSDKMQKRFIKHI"
     gene            complement(11705..12313)
                     /locus_tag="U1404_000810"
     CDS             complement(11705..12313)
                     /locus_tag="U1404_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEM5347783.1"
                     /translation="MTMDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQ
                     RPRDKAMNLNVSNLNDIYFFSQNTPFFLEKLYNRFMPGPLTIILKANENVPFWVNSGL
                     DTVGFRLPNHEQTLRLISETGPLIGPSANISGNESGKKFSDIQAQFSVDLPGIEDDQA
                     LTGIDSTILDLSGQKARILRQGAISREEIQKAIPEIEFEVVL"
     gene            complement(12300..13133)
                     /gene="prmC"
                     /locus_tag="U1404_000811"
     CDS             complement(12300..13133)
                     /gene="prmC"
                     /locus_tag="U1404_000811"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEM5347784.1"
                     /translation="MNYAQLFAAYEEQLVAIGEEAESLSFTFRGLKGLNFTEFLLLLR
                     QEVTPTDKEEIDAIFQQLSQHRPAQYIIGKADFHGLEFAVDERVLIPRPETEELVNLI
                     LQENSGAGLRILDIGTGSGAIAISLAKARSDWEVVAVDISKDALAVAQENARTNQVSV
                     HFLESDVFQAVTGQFDLIVSNPPYISPDDTDEVGLNVLASEPHLALFAEEDGMAIYRQ
                     IAEQAGAFLKEKGKLYFEIGYKQGQDLTDLLALHFPKKRIRVLKDQFGQDRKVIADDN
                     G"
     gene            complement(13133..14212)
                     /gene="prfA"
                     /locus_tag="U1404_000812"
     CDS             complement(13133..14212)
                     /gene="prfA"
                     /locus_tag="U1404_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEM5347785.1"
                     /translation="MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEAATR
                     DTVTAYREYKTVLQNMVDAEEMIKESSGDADLEEMAKEELKQAKADKEAYEEKLKILL
                     LPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGG
                     IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDI
                     DPKDLRVDIYHASGAGGQNVNKVATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIR
                     ARVADHFAQIAQDEQDAERKSTIGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTIL
                     SGKMDEVVDALVLYDQTQKLEELNK"
     gene            complement(14493..15074)
                     /locus_tag="U1404_000813"
     CDS             complement(14493..15074)
                     /locus_tag="U1404_000813"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEM5347786.1"
                     /translation="MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRD
                     AFGVVSSRIGMRRDAVAIDDDMDIFGFIEKMEPRPYCVLIDEAQFLRRHHVYALARVV
                     DELDVPVMAFGLKNDFRNELFEGSQHLLLLADKLDEIKTICQYCSKKATMVLRTQDGK
                     PTYEGEQIQIGGNETYIPVCRKHYFSPEIKELP"
     gene            complement(15173..15397)
                     /locus_tag="U1404_000814"
     CDS             complement(15173..15397)
                     /locus_tag="U1404_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347787.1"
                     /translation="MAYKYRMILSFLLAGLCLYLVATVFAKSIWEGPLFLAFSFYSLI
                     YGCVMLYKWKPTAAKIIFQCIGEFLSLPWS"
     gene            complement(15459..16766)
                     /locus_tag="U1404_000815"
     CDS             complement(15459..16766)
                     /locus_tag="U1404_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HEM5347788.1"
                     /translation="MFKKKATQIVSETSIKKSRKFLNRKTAGITGGILLTTFIGSQLM
                     TAELPKKDDLYGQQYVTVVKHLQEAGFKNIQGVELSDLEFGKIGESNLVELVSVDGED
                     WKEGRALKNIPITISYHVPKKDAVEFNLPASKNLADVEKELKDSGFKQVELTPVLLVE
                     EGNADKKDKIDRLQIGNHTYQSNHFYSTSLPVTLTYFDVSKDNIKLPENLAEAKTKPE
                     LEKQLKTAGFTDIKWTAVADKDKAKHEKIQKINLGGAEIQLPTKQEIISKKSTPIVIT
                     YYDFSSFAELPSSISTKTATDTKKLFTDGGFSQVSEVATETNEIAKNGQIIAVEIDGK
                     SFNEMNDTVIKKDSKVIIKYWNAEKAIAEKARKEEEERLAAEAQKVAEAQSQVQQFAA
                     TPSQNTYYPNCKAVRQAGAAPIYRGEPGYGSHLDRDGDGVGCE"
BASE COUNT         4687 a         3362 c         3262 g         5460 t
ORIGIN      
        1 tttcaaaacg aaagggaaaa acatgacaaa acaagatgtc caaaaaatta ttgtattgga
       61 ttatggtagc cagtacaacc aacttatttc acgtcgaatt cgtgaatttg gtgtcttttc
      121 agaattgaaa aaccataaaa ttacagctga ggaagttcgt gctatcaatc caattggtat
      181 cgttctttca ggtggaccaa actctgtcta cgcagaaaat gcctttgata ttgatccaga
      241 aatctttgaa ttgggtattc ctatcttagg gatttgctat ggtatgcagt taattaccca
      301 taaattggga ggtaaggttg ttcctgctgg tgaggctgga aatcgtgaat atggtcaatc
      361 aaatcttcaa ctgaagactg aatcagcgct ttttgctgga acaccagaag aacagcttgt
      421 actcatgagc cacggggatg ctgtaactga aattcctgct gatttccacc tggttggtct
      481 gtctgctgac tgcccttacg ctgccattga aaacacggaa cgccgtatct acggtatcca
      541 gttccaccca gaagttcgtc attccgtata tggaaacgat attttgaaaa actttgcgtt
      601 tggtatctgt ggagccaaag gcgactggac aatggaaaac ttcatcgaaa cagaaattga
      661 aaaaatccgc cagactgttg gggacaagaa agtcttgctc ggtttatcag gcggtgtgga
      721 ttcatctgtt gttggtgtgc ttcttcaacg tgctattggt gaccaattga cctgtatctt
      781 cgttgaccac ggtcttcttc gtaagaatga aggcgatcaa gttatggaaa tgttgggcgg
      841 taaatttggc ctcaatatta ttcgcgtcga tgctgctaag cgtttcttgg atctacttgc
      901 tggcgtatct gaccctgaga agaaacgtaa aatcatcggt aatgaatttg tttacgtatt
      961 tgacgatgaa gcgagcaagt tgactgatgt tgaattccta gcgcaaggaa cactttatac
     1021 cgatattatc gagtcaggaa cggatactgc tgagacaatc aaatctcacc acaacgttgg
     1081 tggtctgcca gaagatatgc agttcaagtt gattgaaccg ctcaatactc tctttaagga
     1141 tgaagttcgt gctctcggta ctgctcttgg tatgccggat gaagttgtat ggcgccaacc
     1201 attcccagga ccaggccttg ccattcgtgt catgggtgaa atcactgagg aaaaacttca
     1261 aactgttcgc gaatctgacg ctatcttgcg tgaggaaatt gcaaaagcag gtcttgaccg
     1321 cgatgtgtgg caatatttca cggttaatac tggcgttcgc tccgtaggtg tcatgggaga
     1381 tggtcgtacc tacgactaca ccatcgccat ccgtgctatc acttctgtcg atggaatgac
     1441 agctgacttt gccaaactac catgggatgt tcttcaaaaa atctctgtcc gtatcgtaaa
     1501 cgaagtcgac cacgtcaacc gcatcgtcta tgatataaca agtaaaccac cagcaacagt
     1561 tgagtgggag taaattagtc cagtggacta atttacccga tgcctaaaaa taaaaaagca
     1621 tcgctgatct gggaaatcaa ttaaccagac gctccaaaat ataaaaaaac aatcaaagag
     1681 tagtttagtg ctactacttt gattgttttt ttgttttcta gcttaaagct ctaactagta
     1741 ccgttttgga ggggatacaa aatgcgatgt aatgatgtca tccagttgtt cagcaatact
     1801 tgcaaactgc aggtttaagt ctaaattttt gacactaatc tggtttccat gcatttggta
     1861 gacctggtta ggttgaatat ctatatcggt tttagcgtat agaagcattc ctgctactgt
     1921 atcgtttgaa tctgacaggc gataagcctg gtttttcaca taggtaaaaa tttggtatag
     1981 attatttgaa tggagtgtgc gcttatcaaa gcgaatctgt gtgttactag aataatattt
     2041 agcatcaata atcaatatag tatctttata tttgaggtaa atatcactct gcatgatggg
     2101 gagcatttct ccaaaaccat catctagtgc ccaaggtatc tgagaggcgg taacctgtat
     2161 ttggggataa tgctttttat aatatccaag aatgaacttc tcatatagca aggattccct
     2221 ccgctcatca agaaaattca tcaatttctt attcccctcc ctctctgtat gaattaatcc
     2281 attcaccacc aaatagcaga ttgacattag taattgatac gactgattgt ttcgattata
     2341 ttgtaaattc caattgattg agtgcagatt aatttttgag acttctccaa agaaaactaa
     2401 gagttttctc aatttctttt tcctgtccct gcttatatca gcttttagca gtatctcaat
     2461 gcttgctttg ataatgcgat tcattctact gtcaagagaa aaatcatcgt attggcaaac
     2521 aagttgcttt ctacgccaat tcggaggtgt taaagattca gagatattta ttttaccttt
     2581 aagtgccgag agtgactcgg tttgagaacg atactctcga ccaagtcctc ttttcacctg
     2641 tatcgagagg ctgattatca ttatttccgc cagtaaatct gcagcatttt taaattcttc
     2701 agtagcgatc cgtttatatt cctgcttatg aaggattttg aatgcgtagg atagcatata
     2761 gtagatattt tggacaggta tcactggatg gcactcctta acttactact ccaatcatga
     2821 atttttgtcg gttcatcaaa ccaatattct ttcaagaggg gaatcagttc atattcaaca
     2881 atggcttcta gcaaaccttg gtccagtact tctgccgata aaccgcagaa gtaactatgc
     2941 ccaatacaga agctatctcc cagtacttcc tctgttgaaa tggcctgatt tagcttttct
     3001 atacaggaaa tgagtctatc gaatttttcg tttttcagat ttgtttgata atctttgaat
     3061 cccgcagttg aaaaacctgg cttgatgtca aagaaggcaa agcgtcgtct cagtgcataa
     3121 tcaagtaggg ctaaactcct atctgcggta ttcatcatgc cgatgatata tagattttct
     3181 ggaattgaga attgctcatc cgagtagagg agctgtaaag acttgcctcg tttgtcattt
     3241 tctatcagca taaacaattc accaaaaatt ttgctcaaat ttcccctgtt tatttcatcg
     3301 ataataaaga aataatcatg actcttgtca gactctgctt ttttgcagaa agtatagaat
     3361 gcccctcttc tcagctcaaa gccacttgtc gaaggtctaa agcccatgat gaagtcctcg
     3421 taggaatagc tttggtgaaa ctgaattgtc atgacccttt ctaaatctgg tttacccatt
     3481 aatgaaaatg ctaggcgttc tgcaacaaac gtctttccaa ctcctggcgc tccttgtaag
     3541 atgatattct ttttcatttg gagtatggag gttaattgat catactcttc ttctgtcata
     3601 tagacttctg ataggaagtg atttttcgta tagctatctt ctactacctc ttcactacct
     3661 atctcgtttc cagtatcagt ttcatcagcc agtggagaaa ttgctccagc acttctttcc
     3721 ttctcttctt gattgatctg tttagagtat ttccaagcca tggatgataa ttctttaaaa
     3781 tctttcagtt tgctctctgc actgtttaaa taatgatgca tagagtccga gatataaaaa
     3841 taatcatcgg cagaaatttt tgacttcatc tttggtagtt ttttgatgac atcagtagga
     3901 atctccccag attcgtatac ataccactta tttctgctat ctaagttcaa gaaaaagtca
     3961 ggagcaatcc aatacaaggc catcgtaatc ttgctgttgc catttccttt cttgtttata
     4021 gccaaatcaa aatagtgtga aaatttttct ttcttctcag ccgtaggctc cttgctatag
     4081 gtcaaagcag caatgaaaag ttcccataag tcatcaatat ctttctcatc acgatctccg
     4141 ataaaataat agaaagtcgc attctgattc atcagtactg gtatactttc aaaagaggat
     4201 gggatttccg tttggaggtt gaataattct gctatagctg tcagaatttt aatgcgattc
     4261 tcctctttta tttgcttgtt gaagagtcca aatatcgtaa aaggatcaat atctatcagg
     4321 tgattgtcct tttctaacgt gggcatatgt atctttgttt tggtatagat agcttttact
     4381 ttctcaacca gctctgctct attatcttta tagtctagta atttccaagc aaattcctta
     4441 taaaagttta cccaattgaa ttgattttgt tcatccatag tatcctccaa cggtgttgta
     4501 tctacaccta ttaaattatg agttcgaatt tacctatatt ttatcattaa acattcctgt
     4561 cgtaaactta gaatttatat acttgtgtaa cagtttaatg tggtacctta aaataaaata
     4621 gtttcttttg atatttatat atgataatat atgactgaaa gcgttttaga aaggtgtgat
     4681 ggctgtgttg aaatactcga aagcgcggtt acttgtcttg cttattgcca ctggtctatc
     4741 ttgtatcgga atctactggc tcggaaaaga gcaaaataga ctattaaatg agcagtgtca
     4801 tgccttgaac atacgcatta ttaatgatct gggagcaaaa attgatgcca ttggcggtcc
     4861 gcaaaatccg cgtatcattg gattctttca gcaagatgac actactgcta tcagccagcg
     4921 gattggtacc gcttctgagg aggaactgaa aatagctaaa cctgacaatc tattccagaa
     4981 agagtggatt gttctctatc ctcaaacgcg cagcagtccc tttgaaaata cttctgccta
     5041 tgcagtaatg aaaaccagta tcaaggctga ctggctccat gtgactactt cgtcagagac
     5101 ggaattagat attttttatg agaaggcaga tgaaagcttg ctgaccttgg aagacttggt
     5161 gcaagacaag gaaagttttc atgctacact aaaaacaatc ctagtttcag ctaaaaatga
     5221 ggctgaaatt caagttcaaa aagatatttt agaaatgttt gagagtgatg attggtctgc
     5281 tattcccttt gcttacactg aaaaatctct gatattggag aaagctgtca tttcagtttc
     5341 tgcatttgta gatagtctaa atccctacta tttttcagaa caaacccttg cagatttgcg
     5401 tttatcagaa gaatcgcgcc aggctttaga agattcggta gataagacaa ttatcaccta
     5461 tccttgaata aacggtggga gtgggaaagt cgtcatggat gtctttccca gcttctttat
     5521 atttttgttt aacaaattaa acatttttgt ggatttgaaa aatatttttt gttatacttg
     5581 tgttatgaaa acatcaacac ttggaaagtt actagaatta ccaaattttc accacttcta
     5641 caccgttcca attagagaaa atacggagtc ttctggaaat tatataattg tttttgaaca
     5701 ggacaagcaa cctgtatttg ttgatttgaa aaatgagact ggtcacactc gtgaggtacg
     5761 ctttgccagt cattttgaca gcgccggtct tctggtcggc ttaggagcca ttcctatcaa
     5821 ttattggcct acctgccaga ttcttggtgt gcagaaaaat aataatcgac gaggacttag
     5881 tctatctagt ctgatggatg gttatggacg tctacctatt tttaaggaaa tggcagagcg
     5941 ttatagagca cgtggacaat caaccattta tgacccctac cgttattcat atactattga
     6001 tgaaaagaag gttattaagg ataatcaatt aacccttatt ccaaagaaag aatacgaaaa
     6061 gataaaagat tttcatcctt ttttgcaaac aaagcatgga aatgtttatg cagttccttg
     6121 tttctatcaa gacagaaaac gaaatcagac tattaaaatc tatattatag gctggtactt
     6181 ttatgagaag caattaaaaa tatcttggaa accttctcac tctcgtaaaa gccgctggcg
     6241 ttcttctctt gtttcagttg ataaattatc ggaccgcttc ttctttcagg gagaattgta
     6301 taaaaaagga acctatccag tgttcctgga agatctcaca ataaaaaata aggcctacca
     6361 acatcgcctg gatagggagt ttgcagcctt tttaagtatt attgaagaac aaaaacggag
     6421 agcacagctc cgtgttaagt agaaaatggg taggttggta aattaccgac tatcattttt
     6481 acgattatct tttagtttta caacgactcg aaactggcga tcaggatgat tttctgtatt
     6541 ggacatctga atacgtgctt ctagaatatc gccatgtcca aaatagatta accgactgat
     6601 tagtgagttt ttatccgatg ggatatatcc taactttgtg ccctgataaa agattgctac
     6661 agcttctgag tcatgtgggt ttgaaggctc tccgactagc tgaacaggtg ttcctggctt
     6721 gagttggtcg attacatcta gtccatcata gtaggcaaag gctgccaaat gaaaatcttg
     6781 aacattgaga atcattgtgg ttgataaaca atttgataat ctgcattgat aataacaccg
     6841 ttttggtaaa tagtgtaacg ggcattatca tcgccttcca aaatattata aggaatagat
     6901 tcggtgcgcg tgtagttacc ttcaatgacg cgccaattgt tttcgcctaa aattgagttg
     6961 gcataatcaa tcgtttttgg tccactatcc aactggacgc ccgtttcagt attttttaat
     7021 gggtctatac cgctagtggc tgaattggtc aagcgataat agacatctac cacgtctgct
     7081 gttgtttctt ggcttattac aatcattcta tcgcgcgtag agtcagtagt gtctgtctca
     7141 gttgtatttg cttgtgttcc tttgggaatc attaatagtg ttacatcgcc aatcgttgcg
     7201 tctacatagc ctgtttcaaa aattccgtca gttatttttc cgcggccaag taaggactgg
     7261 ctatctgcta ctaatccttt actattgaag actagtgaat ttccttggct attttgccag
     7321 gtgcctagta tactatcgta attgccttgc attagagcat ctatatccat agaactaaga
     7381 gaaatctcac gttggattgt tgatgacgtg cttgtattgg cattagaaac ctgagtatca
     7441 gcagttgagg tacttgcgga actgcccttc ttttcagttt gacaggcaga aagcgacatg
     7501 atagtgagca agccaagagc gagtgctaaa tattttcttt tcattctagc tatctcccct
     7561 ctaatctcta tgaatagtaa agccagttgc ctgtttggtt gccataatgg ttatatcaga
     7621 aatctgcacg tgtgcaggtt gatttgcgac aaatagagta cagctggcaa tatcatttgc
     7681 ttgaagagca tcaattcctt gatagactgt cgctgctctc tctttatctc catgaaaacg
     7741 gacttggcta aaatcagtct caacgatacc gggttgtaac gtagttacct tgatattttt
     7801 atcaatcgtg tcaatacgga tcccgtctga aagcaccttg acagctgatt tggttgcagc
     7861 atagacagca gctcctgcat aggcgtaaat accggccgtt gagccaatat tgataatatg
     7921 accctcattg ttttcaacca tttgtggcaa taactgacgt gtcacagtta gtaatccttt
     7981 aatattggta tcaatcattg tcatcatgtc agtcaaatca tagtcttgga atttgtctaa
     8041 tcccaatgcc agaccagcat tgtttaccaa aatatgaatt tgtccaactt cttctaagat
     8101 tttttgacaa tttacaattg tttgttccat attcgtaata tcaaatgaat gaactgatac
     8161 ctgaacatgg tattgctttt caatatcttg cttaatttct tctagtttgt ccaatcttcg
     8221 tcctgtaatg atgatattat caccattagc agcaaacaca taagcgattg ctttgccaat
     8281 accactactt gcacctgtaa tcaatacatt tcgtttcatc actctgtctc ctattctctt
     8341 tattatacta caattttacc tagtttgtaa aaatgctgta gttaaaaact catcagattt
     8401 ccgatgagtt tgataggtat taaaataaat taatgaggcg catcagatgc atattaaaac
     8461 gaacctgtct agcatagtag atatttccac catttacata taacttccca ccatttagca
     8521 aagccaaggg gtgaaaatag gtatatgttt cttctgtagt attccctaag cttggtgcta
     8581 ctactgttct ggagtattct ttagctaaag agagtgtatg ttctccacca tgctcagcaa
     8641 tatagtcaat ataggctgga ccgaaattat atgcctgaac tgctgtccaa acctctactc
     8701 ctttttcctc agccaaccgt aggttttctg ttaggtagat aattccttgc ctgatactct
     8761 ctctactatc cgtgatagtg ttagcatagc cagtagcgga ctcacttgat tgcatgacat
     8821 ctgcttcttg tcctttggtt tctgtgtaaa tcattgctag gactagttct tcattagctg
     8881 gtgtgtcgtt ttctgccaat acttcttgta ccatagtttg ataggtcatc acttgcttga
     8941 ctgcactgta ggtttgatag aatttgtaac cgagaaaaat cagtaaaaga agtatcagcg
     9001 tacgtatcag ttttttcatt tacttgctct ttatgtcttc aatatttttg ataagaatag
     9061 aataggttcc gttgtcattt tgaataaact caaccgattc tgcatcctca tagattgcat
     9121 ttggcacaat caactcaatt ccgtttgata aagatagctt ctgattttca aatttcttaa
     9181 gttgacggct actatcaatt tcatcgaagg aaatcttatc aggtatgacc tctttcagtt
     9241 gatcgacgaa atttaaacga gcggtcaggt tgttatcgaa taactgatca gccaattttt
     9301 cgggtgaaag ctcattatct tcttctaaat tgttgaaaat agctgacttg attttcgatt
     9361 gaaattgaaa atcgccttga tggaaattgt cagcaatctt ctgtgcagtt tgctctactg
     9421 ctttgattga tttttttgca gaaatagctg gtgtaacttg cagaagatta tctgagaaat
     9481 aattgaggaa ggatccattg tgtttgattc ttttctcaat caaatgatac ttccgcgttt
     9541 gaagattgac aatcaaggct tcatcaggtg ctgaacctgc tccaggtaaa ttattctggg
     9601 tgatttttaa aggacttccg ctttccagac caacgtgggc gagattttca cgcagtgaga
     9661 ttctcaaaaa ggtaaaatgt tccacaccat ttcgttcaaa ctctatgaaa atgaggtcat
     9721 tggtttttaa attctcagaa attgaaaatg cttctttcca tagattagca atcttgacag
     9781 agttggtcag taggtcacca tctaaatagt caagaaaagg attgtcgggg ttaaattgtc
     9841 ctgtttttgc ttcatcagaa aagacacgtt caatcttttt acgcaaatat tcttctattt
     9901 ttgggctaac agtcaaaagc tggtcggaaa ggaccagctc tgtatcatca ggactaaatt
     9961 gatgtatgat ggcttttttt acaaatatat ccattataaa ccttcgtaaa gtgggaattg
    10021 atctgtcaaa gcacgcactt cttgacggac ttcctcaaga gctttttcat tttctgcatt
    10081 ttcaagtgct ttgatagtta gttgtgcaac tttgcgagct tcctctactc caaaaccgcg
    10141 agcagtaatg gccgcagagc caatacggat accgcttgtt ttgaatggtg agagtttttc
    10201 gtaaggaatt gagtttttat tgagagtaat atttacttca tccaagagat gctgagcaac
    10261 tttaccattt tcaacaactt tggtcacgtc aacgaggaag agatggttgt ctgttcctcc
    10321 tgtgatgact ttaaagttag ggtttgcaag gaagacctca gccatggcct tgctgttttc
    10381 aatcactttt tgagcatagt ctttgaaatc tgggtccaaa acttctttga aagatacggc
    10441 ttttgcagca ataacatgct ctaatggacc accttggatg cctgggaaga tggctgagtt
    10501 gattttcttg ataagctctt catcattggt caaaattaaa ccaccacgtg gcccacgaag
    10561 agttttatga gtcgtagttg ttgtaatatg ggcatgtggc actgggttcg gatgaagacc
    10621 tgctgctaca agaccagcaa tatgagccat atccaccatc agtttggcac ccactgcatc
    10681 tgcaatttcg cggaatttag caaagtcaat tgtacgtgca taggctgaag cacctgctac
    10741 aatcaatttt ggctgtactt cttttgcttg ttttaaaatt gcatcgtaat caagcaagcc
    10801 agtttcttcg tcaacattgt aagctacaaa gttgtaagtt tgtcctgaga agctaactga
    10861 tgcaccgtga gtcaagtgac cacctgcagc taagtccatc cccataacag tgtctcctgg
    10921 ctcaatcaag gccatgtagg cagcacaatt ggcctggctt cctgagtgtg gctgaacgtt
    10981 agcaaatttc gcaccgaata tttctttagc acgttcaata gctaaacttt caactacgtc
    11041 aacgcattcc gtaccgccat agtaacgacg acctgggtaa ccttctgcgt atttattggt
    11101 caaaatagaa ccttgagctg ccataacagc tttagaaaca acgttttcag acgcaatcaa
    11161 ttcgatatta ttttgttggc gtttttcttc agcttggata gcttcccaaa cttctttatc
    11221 aaattctttg tagttaactt tgtcaaaaat catatacggt actcctttgt attgggctaa
    11281 atgtgcttga taaaacgctt ctgcatttta tcggagtgat agccattctt ttcgtagaaa
    11341 agatgggctt ggagacgact ttcagcagaa ttgaggcgaa taaaatggta gccctctttc
    11401 tgtgcaattt gctcaacagc tttcagcagg cttgctccaa tcccttgtac ttgatgacca
    11461 ggcaaaacag ctagtccgag aatattgagg cctgtatccg aatagagact ttcatagact
    11521 tgtgcgtgaa tgtaaccttg cactgcgcca cttatgtcat ctatatagac caacaagata
    11581 tgccccaatg tactcgtaca tctaaaaaat tgtcgctcag tttgttccaa tgaacaatca
    11641 taccctaagg attgagcatt gatttctcgg atgactacca agtcaccttt ctcaatggga
    11701 cgaatcataa aactacctca aattctattt cgggaatggc tttctgaatc tcttcacggc
    11761 tgatagcacc ttggcgcaaa atccgcgctt tctgtccaga aaggtccaaa atcgttgaat
    11821 caatgcctgt cagagcttgg tcatcctcaa tgccaggcaa atcaactgaa aattgtgcct
    11881 ggatgtccga aaacttcttg ccactttcgt ttcctgaaat attggcggac ggtccaataa
    11941 gtgggccagt ctctgaaatc aaacgtaagg tttgttcgtg attgggaaga cgaaatccaa
    12001 cagtatccag tccagaatta acccaaaaag ggacgttttc gttcgctttc aggataatcg
    12061 ttagtggtcc tggcataaat ctattataca atttctccag aaaaaatggt gtattttgac
    12121 tgaaaaaata aatatcgttc agatttgaga catttaagtt cattgccttg tccctcggac
    12181 gctgtttcaa ctgatagaca cgattgactg catcttcatt caaggcttgg gcaaaaagcc
    12241 catagactgt ttcagttgga aggataacag caccaccatt ttcaagaatt gttcggagtt
    12301 tatccattgt catccgctat gacctttcta tcctgtccaa attggtcttt gaggactcta
    12361 attcgctttt tggggaaatg cagagcgagt aagtcagtta ggtcttgccc ttgcttgtag
    12421 ccgatttcaa agtagagttt tcctttttcc ttcaaaaatg cccctgcttg ctccgcaatt
    12481 tgtcgataga tagccatgcc atcttcttcc gcaaataagg ccagatgagg ctcagaagcc
    12541 aatacattga gtccaacttc gtctgtgtca tctggtgaga tatagggcgg attagaaaca
    12601 atgaggtcaa attgccctgt cactgcttgg aagacatccg attctagaaa gtgaacagag
    12661 acttggttgg ttcttgcatt ttcctgagcc actgctaggg catcctttga aatgtcaact
    12721 gctaccactt cccaatcaga tctagctttt gcaagggaaa tagctatggc accgcttcct
    12781 gtaccgatgt ctaagatacg caaacccgct ccgctatttt cctgcaaaat caaattaact
    12841 aattcttccg tttcaggtct tggaatcaaa actcgctcat ccaccgcaaa ctccaagcca
    12901 tgaaaatcag ccttgccgat aatgtactgg gcaggtcggt gttgggaaag ttgctgaaaa
    12961 atcgcatcaa tctcttcttt gtcagtcggt gtaacttcct gacggagcag gaggagaaat
    13021 tccgtaaagt tcaatccctt taagccacga aaggtgaagg acagggattc tgcctcttca
    13081 ccgattgcga ctaattgttc ttcgtatgct gcaaataatt gagcgtaatt cattatttgt
    13141 taagctcttc tagtttttgc gtttgatcgt agagaacaag ggcatctacg acttcgtcca
    13201 tcttacctga caagatggta tcgagctttt gcaaggttaa gccgatacgg tggtctgtca
    13261 cacgattttg tgggaaattg taagtacgga tacgctctga gcggtcacct gtaccgatag
    13321 ttgatttacg ctctgcatcc tgctcatctt gggcaatctg tgcaaagtgg tcagctacac
    13381 gggcacggat aatcttcata gccttttcac ggtttttctg ctgggtccgt tcttcctgca
    13441 tttctacctt gatgttggtt ggcaagtgaa cgatacgcac ggcagttgca accttgttga
    13501 cgttctgtcc accagcacca gaagcgtggt aaatatcgac acgaagatct tttggatcga
    13561 tgtcatattc cacttcttca acttctggca tgatgaggac agttgctgtt gaggtgtgga
    13621 cacgaccttg gctttctgtc acagggacac gttggacacg gtgagctcct gattcatact
    13681 tgagttttga ataaacggat tgaccagaga ccatggcaac cacttccttg ataccgccga
    13741 caccattata agaagcctcc atgacttcaa aacgccagcc ttgaccttct gcatactttt
    13801 gatacatggt caaaaggtct ccagcaaaga gggcggcttc atcaccacct gcggcaccac
    13861 ggatttccaa gataatgttt ttgtcatcgt tagggtcttt tggtaaaaga aggattttca
    13921 gcttttcttc gtaagcctct ttatcagcct tagcttgttt gagttcttcc ttagccattt
    13981 cctccaaatc agcatcgcca gaggattctt taatcatctc ttctgcatcg accatgtttt
    14041 gaagtacagt cttatattcg cggtaggctg ttactgtatc acgagttgca gcttcttcct
    14101 tagacaactc cataaaacgc ttggtatcgc tgactacatc agggtcagac aacaattcac
    14161 caagttcctc gtagcggtcc tccaccgcct gtaattgatc gtagatgttc ataattttaa
    14221 gatattaagg gcgttaaacg aacaaagcaa aaataggagt tttgacgaag gacgaaagcg
    14281 tcctaggaaa aactatcttt tttgcacagt tcgtagcccg tattcaattc ctttctaaat
    14341 atttgacaga acacacttct agttagcttg tagggcgtgt tcaattcctt tgccgtagta
    14401 tgtaagtcat gaaaattggc acagagtcat aggcaaattc agttctatac agttgctcaa
    14461 tttacagtcg cttctcattt cattttcaaa aattagggta attctttaat ttctggtgaa
    14521 aaataatgtt tgcgacagac aggaatgtag gtttcattgc caccaatttg gatttgttct
    14581 ccttcataag taggttttcc atcctgtgtt ctcaaaacca ttgtcgcttt tttagaacaa
    14641 tattggcaga ttgttttgat ttcatctaat ttatcagcca ataagagcaa atgttgggaa
    14701 ccttcaaata gttcatttcg gaaatcattt ttaagaccga aagccataac gggtacatct
    14761 aattcatcga ctacgcgagc aagtgcgtag acatgatgac gtcgaagaaa ttgtgcttca
    14821 tcaatgagaa cacagtaagg acgcggttcc attttttcaa taaaaccaaa gatatccata
    14881 tcatcgtcaa tcgccactgc atctcttctc atgccaatac gactggatac aacaccaaag
    14941 gcatcacgag tatcaagtgc agatgtcatg ataacaacag gttttccttg ttcttcatag
    15001 ttgtgggcaa ccttcaaaat ctcaatggtt tttcctgagt tcattgtccc atatttataa
    15061 tataattgag ccacttttct ctttccaatc ttaaattttc actccttcca ttctatcata
    15121 aattgaccat ttaggaaata gaaaaacaag cccgttttga gcttgtttga tattaagacc
    15181 atggtaaaga gagaaattct ccaatacatt ggaaaatgat tttagctgcc gttggtttcc
    15241 acttgtagag cataacacaa ccatatatca ggctgtaaaa agaaaatgca agaaacaacg
    15301 gtccttccca gatactcttg gcaaaaacag ttgctactag atacaaacat aatccagcga
    15361 gtaggaacga taaaatcata cggtatttat aggccatgag taatccctcc ttataagagc
    15421 agtatagcat gcaatgtaaa cgttgtcaat gttttttctt actcgcatcc aactccatct
    15481 ccatcacggt ctaaatgact accgtaacct ggttctccac gatagattgg tgcagctcct
    15541 gcttgtctaa ctgccttaca atttggataa tatgtgtttt gagatggtgt agcagcaaat
    15601 tgctgaactt gactttgtgc ttctgctact ttttgcgctt cggcagcgag gcgttcttcc
    15661 tcctctttac gtgctttctc agcaatagct ttttcagcat tccaatattt gataatgact
    15721 ttgctatctt ttttgatgac cgtatcgttc atctcgttaa aagattttcc atcaatctcg
    15781 accgcaatga tttgtccgtt tttagcaatt tcattggtct ctgttgctac ttcagatact
    15841 tgagaaaaac caccatcggt aaacaatttt ttagtatctg tagctgtttt cgttgaaatg
    15901 gatgatggca gttcagcgaa gctagagaaa tcgtagtagg taatcacaat tggggttgat
    15961 tttttgctga taatctcctg tttggtgggc aattgaatct ctgcaccacc tagattaatt
    16021 ttttgaattt tttcgtgctt tgctttatcc ttgtctgcaa cagcagtcca cttgatgtct
    16081 gtaaatcctg ctgtttttag ttgtttttcg agctctggtt ttgttttagc ctctgctaga
    16141 ttttctggta gtttgatgtt atctttgcta acgtcaaaat aggttaatgt aacagggaga
    16201 ctagtagagt aaaaatgatt ggattgatag gtgtgatttc cgatttgaag gcgatcaatt
    16261 ttatcttttt tgtccgcatt gccttcttct actagcagaa caggagttag ttcgacttgc
    16321 ttaaaacctg aatctttcag ctctttttcg acatctgcta aatttttaga agctggtagg
    16381 ttgaattcaa cggcatcttt tttgggaaca tggtaggaga ttgtaattgg gatgtttttt
    16441 aaagcacgtc cttccttcca atcttctccg tcaacagaga cgagttcgac aagattgctt
    16501 tcacctattt ttccaaattc taaatcacta agttccaccc cctgaatatt tttaaaacct
    16561 gcttcctgaa gatgttttac gactgttaca tactgttgtc cataaaggtc atcttttttt
    16621 ggaagctcag cagtcattaa ttgtgaaccg ataaatgttg taagtaggat gccaccagtt
    16681 attcctgctg ttttccgatt aagaaacttt ctagattttt taattgacgt ttcgctaact
    16741 atctgagttg cttttttctt aaacataaat c
//
LOCUS       DASGCC010000036        16753 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.036, whole genome shotgun sequence.
ACCESSION   DASGCC010000036 DASGCC010000000
VERSION     DASGCC010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16753
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.036"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            299..2993
                     /locus_tag="U1404_000816"
                     /pseudo
     CDS             299..2993
                     /locus_tag="U1404_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638462.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
     gene            complement(3460..4161)
                     /locus_tag="U1404_000817"
     CDS             complement(3460..4161)
                     /locus_tag="U1404_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5347789.1"
                     /translation="MWSPKKLTVLKWFDILILTIILFGDGIINSTLQYIALQNQTTTL
                     QENLTFSTMDNYKALALQLVWLTIAIFYLLLRNFDFSIWKKHIFITPWVPLQAVALFI
                     FSALCLDIYNLVSYQFLASNTPSMFQLFPNIDLSLILYSLLNGFYEEIFFLNLCLLVN
                     PKYAKWAFLYSLIIRCSFHTYQGLISALGLGLILGTIFYLLYQKIKPKNLLPFFLAHA
                     AADIIGLTVLSYILY"
     gene            4393..5043
                     /locus_tag="U1404_000818"
     CDS             4393..5043
                     /locus_tag="U1404_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5347790.1"
                     /translation="MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEE
                     QFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTAMGDEYIQLISFNQIISDYVVKP
                     FSPTILVKRIENILRGKGETDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
                     KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTIVGRGYQIEGT"
     gene            5045..6433
                     /locus_tag="U1404_000819"
     CDS             5045..6433
                     /locus_tag="U1404_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM5347791.1"
                     /translation="MGIARKSFIIVAAMISFISVTLLGLLYYAMPIYYNQVKKQELRH
                     DYMTVAKQLDGMPEAKIISEIDDFDIKTPNIIISLFSSDRKIIYPDPNDEMAKKHENE
                     YLENGDFDEIGSWGAEITSAEGVTYYLLFNYGFHSLSDVSQTLVTFYPFILLLIIVLA
                     VSVAFVYSRLSTRRIARISETTRRMQSLESGISCAVAGTDEITILAQDINSLYSKLLS
                     SIDELRTENERAMAREKEKSDFLRITSHELKTPIASMLGLVEGMIYNVGPFKDHDTYL
                     KKCKEILQEQSELVHSILEATNLDMALKESREQIRLDQLIDSSLTSYQSLAEVKGYQF
                     EVELSPVLIEANPVYFLKAIKNILDNAFRYSCKEAIIRVVLRQNQLIIENQVERVLSD
                     EELDQVFRPFYRPDYSRDKKDGGIGIGLFIVQKILEKHGFPYTFYASDTQTMRFMIHL
                     QSQSTANSNELI"
     gene            6875..7426
                     /locus_tag="U1404_000820"
     CDS             6875..7426
                     /locus_tag="U1404_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HEM5347792.1"
                     /translation="MIVFLVICIFLVRIYFLKISIKNEKRILKNGGSEFGVQNTKLLT
                     VVHILFYLSCLVEAVVRHTKFDTLSSLGLIFLLFSMGMLFWVTRLLGDIWTVKLMLVK
                     DHRFVDHWLFRVVKHPNYFLNIIPELIGLALLCHATYSFLILFPVYMVILYRRIHEEN
                     NLLKTVIIPNGTVQSAAEITGNN"
     gene            complement(7635..8543)
                     /locus_tag="U1404_000821"
     CDS             complement(7635..8543)
                     /locus_tag="U1404_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HEM5347793.1"
                     /translation="MKIDDLRKSSNIEDRRGQSSSNSSFLSGSSGGNVLLGLLFSRLG
                     WKGKLLVLVLLVAFGGMSNLGGLLSTSTRTNPYQSSQVTTTGTDMSDADAEFMSKVLG
                     STEDFWVQEFKANGLTYNAPTMVFYTNQTQTGCGVGSAQAGPFYCSADRKIYIDTSFY
                     QELSSKYKAAGDFAMAYVIAHEVGHHVQNELEVLGAYHQKRAQLSDKEGNALNVRLEL
                     QADYYAGAWAKYVDGQGILDAGDIDEAMNAAHAVGDDTLQQEAYGRTVPDSFTHGTSE
                     QRKKWFNLGYTYGDLAHANTFSVEKP"
     gene            8709..10052
                     /locus_tag="U1404_000822"
     CDS             8709..10052
                     /locus_tag="U1404_000822"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEM5347794.1"
                     /translation="MVEYLSVSHLTKYLKLKFDRDPYLEKVYLTGQVSNFRKRPSHQY
                     FSLKDDKAVIQATMWAGVYKNLGFELEEGMKINVIGRIQLYEPNGSYSIVIEKAEPDG
                     IGVLAIKFEQLKQALTQEGLFKEEFKQALPRFTKKIGVITSPSGAVIQDIITTVSRRF
                     PGVEIVLYPTKVQGDGAAQEVVANIQRANERDDLDVLIVGRGGGSIEDLWAFNEEIVV
                     RAIFESRIPIISSVGHETDTTLADFVADKRAATPTAAAELATPVTKADLLGYLNQQEN
                     RAYQAMTNRLKFLRGQLEKISQSVMFRQPERLYDGYLQKLDRLTNQLQTRMKELYSQQ
                     KQASLLLQQRLQGVHPGRKVESFQERIIQQERLLKSNMANIYDNKMAKADKLIEALTM
                     LDTSRIVARGYAMIRQDGRVIDSVENVQIGENLTIQMKDGQLDVEVKHVQTDENI"
     gene            10027..10242
                     /locus_tag="U1404_000823"
     CDS             10027..10242
                     /locus_tag="U1404_000823"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002963102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEM5347795.1"
                     /translation="MSKQTKTFEENLAELEGIVTKLERGDVALEEALAEFQKGMVLSK
                     DLQKTLAAAEKTLVKVMQADGSEAEMD"
     gene            10242..11114
                     /locus_tag="U1404_000824"
     CDS             10242..11114
                     /locus_tag="U1404_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM5347796.1"
                     /translation="MVDVKRIDQEIRDFYYNRGTIVSEELIDAILYSIDGGGKRIRPV
                     LLLQIVEGFGVELQQAHYQVAAALEMIHTGSLIHDDLPAMDDDDYRRGRLTNHKKFDE
                     ATAILAGDSLFLDAFGLLSLADLPNQVLLELVQLMSLASGTFGMVGGQMLDMLGEGKK
                     LEIFDLINIHSNKTGRLLTFPFHAVGIITQQPSSVVGSLWQAGMLIGHAFQVRDDILD
                     VTADFDELGKTPRKDLAAEKATYPSLLGLEESKFIVQDSLNKAVAIFKELEEHNGFKG
                     QEVYQLIESLRING"
     gene            11107..11928
                     /locus_tag="U1404_000825"
     CDS             11107..11928
                     /locus_tag="U1404_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEM5347797.1"
                     /translation="MAKERVDVLAFKQGLFETREQAKRGVMAGLVVSVINGERYDKPG
                     EKIDEGIELKLKGEKLKYVSRGGLKLEKALQVFDLAVEGQTTIDIGASTGGFTDVMLQ
                     AGAKQVYAVDVGTNQLAWKLRQDDRVISMEQYNFRYAELEDFELGQPSFASIDVSFIS
                     LSLILPALHRILVDGGQVVALVKPQFEAGREQIGKNGIVKDKSVHLKVLEDVTKMAVE
                     TGFSVKALSFSPVQGGHGNIEFLAHLEKSTQPNQIDKEVITTTVYQAHEEFKKDE"
     gene            11921..12346
                     /locus_tag="U1404_000826"
     CDS             11921..12346
                     /locus_tag="U1404_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5347798.1"
                     /translation="MNKRERLEVIKDLVVRFPIDTQEEIVERLEAMGVNATQATVSRD
                     IKELGIIKVPSADKGYIYGLPKAGLVKVKSQNVFEVSVMDKMINLRLVPGSSAVVKRQ
                     ILEQFQEHVFSVIADDDSILLIVTNEGIISQIEQTVRGW"
     gene            12349..14010
                     /gene="recN"
                     /locus_tag="U1404_000827"
     CDS             12349..14010
                     /gene="recN"
                     /locus_tag="U1404_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEM5347799.1"
                     /translation="MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNL
                     MLGARATTDVIRHGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGR
                     SVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
                     YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDK
                     LLNHKQIADTLTNAYALLDNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYY
                     VVEDITKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTVDDVLDYFSKISEEY
                     NLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKA
                     RFQVRFTKGKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKE
                     GKTSIVFDEVDTGVSGRVAQAIAQKIYKIGQYGQVLAISHLPQVIAIADYQFFIEKIS
                     DEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG"
     gene            14104..14937
                     /locus_tag="U1404_000828"
     CDS             14104..14937
                     /locus_tag="U1404_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5347800.1"
                     /translation="MSKIKIVTDSSTTIEPSLVEELNITVVPLSVMVDGVVYSDNDLK
                     EGEFLELMRGSKNLPKTSQPPVGLFAETFADLAKDGSQIIAILLSHALSGTVEAARQG
                     ATLSGADVTILDSSFTDQAEKFQVVEAARMAQAGASKEEILAAIETVKEKTELYIGVS
                     TLENLVKGGRIGRVQGMLSSLLNIRVIMEMKDHQLTPIVKGRGNKTFKKWLEEFTATL
                     ADKKVAEIGISYSGTADFANEMKSQLQEYVSKEISVLETGSIIQTHTGEDAWAILIRY
                     E"
     gene            14930..15763
                     /locus_tag="U1404_000829"
     CDS             14930..15763
                     /locus_tag="U1404_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM5347801.1"
                     /translation="MNNRKLIQGFVFFFLAILGSIFLFHQLIPVASSRISRQELTVSE
                     KISFRYVALGDSLTEGVGDTTGQGGFVPLLAQSLTNDYGYEVDYKNFGVSGNTSNQIL
                     KRMKEDGELISYLKTADLLTLTVGGNDLRKAIIKNIANLKVSTFDKPAKDYGKRLDTI
                     IKTARKNNPNLPIYVVGIYNPLYLNFPELTEMQTIVDNWNTMTEQITEKYQHVYFVPI
                     NDLLYKGLEGEAGISQNGSQVTNNLLYEEDSFHPNNTGYEIMKKAILERMNETTESWE
                     P"
     gene            15735..16331
                     /locus_tag="U1404_000830"
     CDS             15735..16331
                     /locus_tag="U1404_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HEM5347802.1"
                     /translation="MRPRKAGNLNIWKWLFLAQLALLIGCGIVLYTRIQTDREDLTKL
                     VQTSTEDTKVGTFSTNREQLNQTLTNYLKEYQTEEFSYQLFVTSQQVVFEGSYQIFGV
                     TIPLYIYFQPSKMEDGSILLRITEISVGSLSLPKAEVLAYLQKNYKLPAFVKIDSEQA
                     QVQVQLTELKNKFGLYGKANTIDLYNDQFIVDIYRKRQ"
     gene            16421..16696
                     /locus_tag="U1404_000831"
     CDS             16421..16696
                     /locus_tag="U1404_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEM5347803.1"
                     /translation="MANKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQ
                     LIGFGNFEVRERSARTGRNPQTGAEIKIAASKVPAFKAGKALKDAVK"
BASE COUNT         5496 a         2842 c         3594 g         4821 t
ORIGIN      
        1 agttatgtag taatagactc gcacattttg tgatatggtc attgttaatg ataaatagga
       61 actttgagtt gtaatcatgc ttgcttgact tgataggtga agtaagcagt taacagaagg
      121 acttaggcac cttatgaata cacaaggtgc ctattctttt cccaaaagct ctacgcttgt
      181 tgaacaaaat tatactaaag ttatttacca ttgacatcca tacttccttt tttgaaaata
      241 cctaaagaag ggtgaaaata cattctaaat ttatagagaa caaggagaag gtatcataat
      301 gaatcatcct aaattcactt tgcggaagct atcaattgga cttgtttcgc taggagcagg
      361 ggtagcttta tcgggaacac tctatcccaa aaatactgtg acagtatatg cagaaacacc
      421 tactttagaa aaaacttcgg agacagatag cacttctctg attaggtcta ctgctgtcgt
      481 tgaagaccct gaagttgccc aagctaatga aaacaaggaa ggagaggtgg ttgactcctc
      541 ttctactttg gacttaccaa aatcgaatgc agaatctgct tctcctgagg cattgacgaa
      601 tgaaaacgct tcagaatcag aagtgcaagt tgctgaaaac actagttctt ctgaagaaaa
      661 agcaacagaa aaagaagaac gaaccgttca gtatgaggag aaggaagtag acgactattc
      721 tactaaggtt gaaaaaccaa cggaaacagt atctagtaca gtggacaaaa cttctaaaga
      781 gctttttaca gtttctcgaa cagcagaagt agatcaagag ggagttgtca cagtaacaac
      841 tcaaattgtg ccgaaagaaa ttgacaaggg tgcagaaata gttgtcttgg tggatacata
      901 taaaaaaatg gatgaagatg ctaaaaaaca gctaaagata acattataaa gcttgtcgaa
      961 aagatgactg acccaaccaa tgatcataat tctcgtaact ctgtgcgtgt aatcggtttc
     1021 aaccgcaagt tatctgaagc tcaagaagtt accataccag tgctaatgta gaaactacgg
     1081 ttgagaagct tttcactgat gctgaacaaa attacaattg gggcgtagat atgcagggag
     1141 caatccatga agcacgtcgc attttagaaa gcgagaactc ggggaaacgc aaacatattg
     1201 tacttctgtc acaaggggag tctacattta gttatgattt gtcggatgat gtaaaatcaa
     1261 aacctactta taagaccatt gaggaaaata aggttgtaca tacaaatcca ctcttgcctt
     1321 ggccatttac atttgatgtg actgttcgca gggcaaactt gttggatgat gcaaagagtc
     1381 taataagttt tttgaacaaa gttgggatta cacgtttcga taaagcttta gatgatgtat
     1441 ccactatagc aggaataaca aagcttatag gaataattgc aaaagatccg ttagactata
     1501 ttaatttggt tgatgtagac agttcgcagt cagaagaaaa aaatttcaat tacgagaaac
     1561 aaattggtga aggttatcat ttccgtagct tttatgaacg taaagttgag ccgttgacat
     1621 ttagaaatca aattgttagc aagataaaac ataatttaac aactgagtta aaaaaagctg
     1681 agttacctac aaacactctt agctatatcg ctgaaaagct cggtttaacg aatacttctg
     1741 aaaaagcaat tgatttattt gcgaattccc tcgttgatta tattttctac ggtagaaaaa
     1801 atatttttaa caaccacaac ctctctgctc aagcagaggc caagattgct actaaaaatg
     1861 gtattcatgt ctacgctgtt gatgtgacca aagacaaagc tggcgaagaa aagaataaaa
     1921 ataaatttga tgaatacttg aaaaaaatgt ctggggatga taagaagttt ttaagtgttg
     1981 atgagaatgt tgcagaaaaa tttaaagatg tactgactaa agtgacattg gtagatactc
     2041 ttgaagataa tgttgaaatt gttaaagaac ccaaagaccc taaagtaagt attaaaaaga
     2101 attcttcaac gttctggctg tcatggatta ctagctcgaa aacaactatt acttggaact
     2161 tagataaaga agacttaatc aaggcttatc agactaatca accactttct ttaacttatc
     2221 agttacaact gaaagataaa aagaagaaag attcccaaaa acttgtaagt acagagatta
     2281 gccatgagat taatgataaa gttgggaaga aagtatactc atccctaaaa gtgtctctta
     2341 accataaaac taagaaagtt tcggttcctg ttcctattga gccacaagtt cctgacaagc
     2401 caattgatat gccaaaagta gagaatgaaa cgcctaaggg gactcctgaa acacctatgc
     2461 aggaaaaacc aaatgttcca gaagcaactc ttccaatgca accagagtca cctaaagaga
     2521 ccggaaaacc aggcaataat gttgagccag aatcacttaa gcctatcgaa gactcaaccg
     2581 atgattcagc aaataaacca gactcaacaa ttccaaaagt aacggatacc ccagatttgt
     2641 ctcgcccaat gaaaccagag tcaactgaag agattgataa agcagaaaat agtgatactc
     2701 cagattcttc taagactatt aaagattcag ataactctgc tccaatttct actatcaaag
     2761 ataaagtgaa tgccgaaacg gtggcaaatc aggtagagct tgctatgaat cagaaatcac
     2821 gtctttctga aaatatggag aaagtttcta gcgtgaatcg ttcaaacgag aaatcacata
     2881 cccttccatc tactggacaa gctgattctc caatctatac gttaactgcc ctctctcttc
     2941 ttgtaggagc tcaggtactt tatcgtacaa aacgtaagca agaatcggag taaatgttgg
     3001 tcgtgtaatt tctacttgta tatacatatg gttaatagag tagagattat gcctataata
     3061 gtgtatcgaa ttgttttacc ctccgtacag atccaagttt taggaaatct ttggagattg
     3121 aatataaaac gagccattcg caatagctgc agaggctgaa ctgggaatgt agaataaatc
     3181 tgtcaatcta tactaggctg agatgagata tggacattga ttctgagaag tatagttggg
     3241 cataaacata aatttcaata aaaatatcga gataagtcat ataataaaac gcataaaatc
     3301 aacgttctta gcaacacgat tttatgcgtt ttttggcact cttttctcta aattacacaa
     3361 aataaaccac ccgttttcac gggtggtcat gactagtagg ggtccactca gtctttggtg
     3421 atatgaggat agcttgtgtt caaattatct gttagataac tagtatagaa tatatgatag
     3481 aacagttaaa ccgataatat cagctgcagc atgtgctagg aaaaatggta ataaattttt
     3541 aggttttatt ttttgataaa gtagatagaa aatagttcct agaattaagc ctaaaccgag
     3601 tgcactaatt aaaccttgat aggtatggaa actacatcga ataattaacg aatataaaaa
     3661 tgcccatttt gcatatttag ggttaaccag taagcacaag ttaaggaaga aaatttcttc
     3721 ataaaatccg ttcaacaatg agtacaagat cagtgataaa tcaatgttag gaaatagttg
     3781 aaacatggat ggagtgttgg aagctagaaa ctgataggat actagattat agatatccaa
     3841 gcataatgca gaaaaaatga ataaggcaac agcttgtaat ggaacccaag gagtaataaa
     3901 aatatgtttt ttccaaattg agaaatcaaa atttcggagt aatagataga agatggctat
     3961 tgtgagccaa actaactgta gagccaaagc cttataatta tccattgttg aaaatgtcaa
     4021 attttcttga agagttgtag tttgattttg taaggctatg tattggagag tagagttgat
     4081 gattccatct ccaaataaaa taattgttag aatgagaata tcaaaccatt ttaatacggt
     4141 taattttttt ggactccaca taatgggata gttcctttca tttttgttta gttcagttta
     4201 tcaaacaaat ctatatatgc tctcggtttc gtctgttttt tatctgtttt aaacaaaaga
     4261 agtcaaaaga aagctgaaat agcagaacag ggtgctctat ttatctatga tagagttgca
     4321 ccattgtacg aatcggtata taattgaagt ataataatat tttataatag aactttacga
     4381 ggaggtataa aaatgtcaag gattttggtt gtagaggatg acatagttat tagtcaagtt
     4441 gtttgtgagt ttttaaaaga acatggttat caggtagaat ctgtttttga tggaaaggtt
     4501 gctttagaaa ggtttcaaga agaacaattc gatttaattg ttttagatat catgattcca
     4561 tctatgacag gtttggaagt actgaaggaa attcgcaaaa cttctcagat tccaattttg
     4621 atgctgacag ccatgggtga cgaatatata cagcttatta gttttaatca gattataagt
     4681 gattatgttg ttaaaccatt ttcaccaact atattggtaa aacggattga gaatattttg
     4741 agaggaaaag gagagacaga tagcattgag ataggaacaa ttcttattca accaactagc
     4801 ggggcagttt atatggaaga agaagaagtt caattgacga aaaaagaata tgaagtttta
     4861 ctatatttag ctaaacgacg tgggaaaatt gttagtcgtg ataacttgat gatgggaata
     4921 tggggatata cggaattgga tagtcgtgtc ttagataatc atatcaagaa tatccgtaag
     4981 aaattgccgt cacttccttt gaagacaata gttggtcgtg gttatcaaat agagggtact
     5041 taatatgggg attgccagaa aaagttttat tattgttgct gcgatgattt ctttcatctc
     5101 tgtaacattg ttagggttat tgtattatgc tatgcctata tattataatc aggttaagaa
     5161 acaggaattg agacacgatt atatgactgt ggctaaacaa ttggatggga tgccagaagc
     5221 taagattata tctgagattg atgatttcga cataaaaact ccgaatatta ttattagtct
     5281 tttttcgagt gatagaaaaa ttatttatcc agaccccaat gatgaaatgg ctaaaaagca
     5341 tgagaacgag tatttagaaa atggggattt tgatgaaatt ggttcttggg gagccgagat
     5401 aacatctgca gaaggagtta catattatct gttatttaat tatggatttc actcgttatc
     5461 tgatgtcagt caaacattgg taacttttta tccattcata ttgctgttga ttattgttct
     5521 ggcagtttcg gtagcttttg tttacagtag actgtccact cgtagaatag caagaatttc
     5581 agaaacaaca agacgaatgc aatcgttaga gtctggaatc agttgtgctg ttgcaggaac
     5641 tgatgaaata acaatattgg ctcaggatat taacagcctg tatagcaagt tattgtcaag
     5701 tatcgatgaa ttaagaacgg aaaatgaacg tgctatggca cgtgagaagg agaagtctga
     5761 tttcctccgt atcacatcac acgaattaaa aactccaata gctagtatgt tggggttagt
     5821 cgaaggcatg atttataatg tggggccatt taaggaccat gatacatatt taaaaaaatg
     5881 caaggaaatc ttgcaggaac aatctgagtt agttcattct attttagaag cgacaaatct
     5941 tgatatggct ttaaaggaaa gcagagaaca aatccgatta gatcagttga ttgattcctc
     6001 tttaacaagt tatcagagtt tggcagaggt taagggctat caatttgaag tagaactatc
     6061 accggttctc attgaggcaa atcctgttta tttcttaaaa gctattaaga atattttaga
     6121 taatgccttt cggtactcat gtaaagaggc tattattcgt gtagtactac gccaaaatca
     6181 attaataatc gaaaatcagg ttgaacgtgt tttaagtgac gaggaattgg atcaagtctt
     6241 tcgtccattc tatcgtccag actacagtcg tgataagaaa gatggtggca tagggattgg
     6301 tttgtttatt gtacagaaaa tattagaaaa acacggcttt ccgtacactt tttatgcttc
     6361 tgatacacaa actatgcgtt ttatgattca tttgcaatca caaagtacag cgaatagtaa
     6421 tgaattgata taggtaaaat atagacaata tttagttttt cttttattac ttcgacgtaa
     6481 gaggaaactc cgtttcctta tttccaactt caaacactcc actggattgt ttgaactcgc
     6541 tttgctgtac tctgcagggg tgacttgctc cgcaagtgct atctccaacc ttgcacagtc
     6601 actcgactgt acaagctgtc tgcagctatt gaagcgaact tgcttcgccc tatctccaac
     6661 ctccaaaggt tccccaaacc tttggagcga gtactaaaag taaactaaaa gactataaaa
     6721 gagacatgat ttcatccatt tttgaaaaca ggtctctttt attgtagtct caaatggaaa
     6781 atagaaaaaa aacaggagag gaatagaatg gcgacagtct aactttgtat aatggatgtg
     6841 tttgataaaa tctgttaaaa tacaggaggg atttatgatt gtttttttgg ttatttgtat
     6901 ttttttggtg agaatctatt ttttgaagat ttcaattaaa aacgaaaaac ggattttgaa
     6961 aaacggcggt tcagaatttg gtgttcaaaa tactaaatta ttaacagttg tacatattct
     7021 attttattta tcatgtttgg ttgaagcagt agtgcgacac accaagtttg atacgcttag
     7081 tagcttaggt ttgatattct tgctgttttc aatgggaatg ttattttggg taacacgatt
     7141 gttaggtgat atttggacag ttaagctcat gttggtaaaa gatcatcgtt ttgttgatca
     7201 ttggttgttt cgtgttgtaa agcatcctaa ctatttccta aatattatac cagaattaat
     7261 cggtttagct ttattgtgtc atgcaacata tagttttctc atcttattcc cagtctacat
     7321 ggttatctta tacagacgta ttcacgagga aaataatttg ttgaaaacag tgattattcc
     7381 aaacggaact gtgcagtctg cagcagagat aactggaaat aattaaagtt tgctaaataa
     7441 taattgtgat attgtttgaa actaggatac cgctctaatt agagttgatg agtaagttta
     7501 catgattcag ttttcatatt taaaagtggt accgtatgtg taaattggct tttgtcagtt
     7561 gtatattata aagaaactct tgcaaaagtg tatgttgcaa gagtttcttt attgctacga
     7621 gaggctatgg atgtttacgg tttctctacg gagaatgtat tggcgtgagc aaggtcacca
     7681 taggtataac cgagattaaa ccattttttc ctttgctcag aagtgccgtg ggtaaaactg
     7741 tctggaacag tacggccgta ggcttcctgt tgaagagtat cgtcaccaac tgcatgggca
     7801 gcattcatgg cttcgtcaat atcaccagca tccaagatgc cttgtccatc aacatatttg
     7861 gcccaggctc ctgcataata gtcagcttgc aattctaaac gaacatttag cgcattgcct
     7921 tccttatcgg atagttgagc ccgtttttga tggtaggccc caagaacttc taattcattt
     7981 tggacatggt gaccaacttc atgagcgatg acataagcca tggcaaagtc accagcagcc
     8041 ttatacttgc tagacaattc ttgatagaaa gaagtatcaa tataaatctt gcggtcagca
     8101 gagcaataga atggaccggc ttgggcggaa cccactccac atccagtttg ggtctggtta
     8161 gtatagaaaa ccatagtcgg tgcattgtag gttaaaccat tggctttaaa ttcttggacc
     8221 caaaaatctt ctgtcgatcc taaaacctta ctcatgaatt cagcatctgc atcagacata
     8281 tctgtaccag ttgttgtgac ttgactcgat tggtaaggat tagtccttgt tgaggtggaa
     8341 agcagcccac caaggtttga catgcctccg aaggctacta aaaggacaag aacaagtagt
     8401 tttcctttcc aaccaagtcg tgaaaagagt agtcccaata gaacatttcc tccagatgaa
     8461 ccagacaaga aagatgagtt agaactggat tgtcccctgc ggtcctcaat gttagaactt
     8521 tttcgtaaat catcaatttt catataaatc tccttagaac ctgtcaacaa gttcttattt
     8581 tctcacaagc tattatatag taaaacgcag aaaaaacaca ggaaagctat cggaaataat
     8641 aggcatagtt ctgtataaaa gtgcaaaatt tggtataata gtagggatac aatatagaag
     8701 gagtggacat ggttgaatat ttatcggtta gtcatctaac taagtattta aaattaaagt
     8761 ttgaccgcga tccgtatttg gagaaggtgt atttgacagg tcaagtgtcc aacttccgta
     8821 aacgccctag ccatcaatat ttttcgctca aggatgacaa ggcagtcatc caagcgacca
     8881 tgtgggcagg cgtctataag aatctgggct ttgagcttga agagggaatg aaaatcaatg
     8941 tcattgggcg cattcagctc tatgaaccaa atggttccta ttccattgtc attgaaaaag
     9001 ctgagccaga tggtattgga gtcttggcaa tcaagtttga acagctcaaa caagctctga
     9061 cacaggaagg tttatttaaa gaagaattca agcaagcctt gccacggttt accaagaaaa
     9121 tcggtgtcat taccagtccg agtggagctg ttattcagga tattattaca accgttagcc
     9181 gacgttttcc aggcgtagag attgttctct atccgaccaa ggtgcaagga gatggggctg
     9241 ctcaagaagt tgtcgccaat attcaaagag ccaatgaacg ggatgacttg gatgttctga
     9301 ttgttggccg tggtggtggt tctatcgaag acctttgggc atttaatgaa gaaattgtgg
     9361 ttcgggctat ttttgaatcc cgtattccaa tcatttccag cgtaggtcat gaaactgata
     9421 cgactctggc tgattttgta gcagataaac gagctgccac cccaacagct gccgcagaat
     9481 tagcaacacc tgtgaccaag gcagacttac tgggctacct caatcagcag gaaaatagag
     9541 cctatcaggc catgaccaat cgtttgaaat tcctaagagg ccagcttgag aaaattagcc
     9601 agtcagtcat gttccgccag cctgaacgct tgtatgatgg ttatttacaa aaattagacc
     9661 gcttgaccaa tcaattgcag acacggatga aagaactcta cagccagcag aaacaggcta
     9721 gtctcctact acagcaacga ttacaaggtg tgcatccagg tcgtaaagta gagagtttcc
     9781 aagagagaat tatccagcaa gaacgactct tgaagagcaa tatggctaat atctatgaca
     9841 ataagatggc caaggcggac aagctgattg aggccttgac tatgctggat accagtcgca
     9901 tcgtggcccg tggctacgcc atgattcgtc aagatggtcg ggtgatcgat agtgtagaaa
     9961 atgtacaaat tggtgaaaac ctaaccatcc agatgaagga tggtcaactt gatgtggagg
    10021 taaaacatgt ccaaacagac gaaaacattt gaagaaaatc tagctgaatt agaaggaatc
    10081 gtaaccaaat tagagcgagg cgatgtggct ctggaagaag cacttgctga gtttcaaaaa
    10141 gggatggttc tatcgaaaga tctacaaaag acactagctg cagctgaaaa gaccttggtc
    10201 aaggtcatgc aggcggatgg cagtgaagcg gagatggatt aatggttgat gtgaaacgga
    10261 ttgatcagga aattcgcgat ttttattaca accgtggaac aattgtttcg gaagaattaa
    10321 ttgatgcgat tttgtattcg attgatggtg gtggaaagcg gattcgaccg gtcttattgc
    10381 ttcaaatcgt ggaaggattt ggggtagaat tacagcaagc ccactaccaa gtggccgctg
    10441 ccttagagat gattcatacg ggaagcctga ttcacgatga tcttcctgcc atggatgatg
    10501 atgattaccg tagaggtcga ctcaccaatc ataagaaatt tgacgaagcg acagctattt
    10561 tagcaggcga tagcctcttt ttggacgctt ttggcctcct gtctctggct gatttgccaa
    10621 accaggtttt acttgaattg gtacagctta tgtcattagc atctggaacc tttgggatgg
    10681 tcggtggtca aatgctggac atgctaggtg aaggaaaaaa attggaaatt tttgacctga
    10741 taaatatcca tagcaacaag acaggtcgat tattgacatt cccatttcat gcagtaggga
    10801 ttattacgca acagcctagt tccgttgtcg gttccttgtg gcaagctggg atgttgattg
    10861 gtcatgcctt ccaggttcga gatgatattt tagatgtaac ggcagatttt gatgaattgg
    10921 gcaaaacgcc tcggaaagat ttggcggctg aaaaagcaac atatccaagc ttgttagggt
    10981 tagaagagtc caaattcatt gttcaggatt cattgaataa ggccgtggcc atttttaagg
    11041 aattagaaga acacaatggc tttaaggggc aagaagtgta tcaattgata gaaagtttac
    11101 gaatcaatgg ctaaggaaag agtagatgta ctagctttta aacaggggct tttcgagacg
    11161 cgggagcagg ccaaacgtgg tgttatggct ggcttagttg tatccgtcat caacggggaa
    11221 cgctacgata aacctggtga gaagattgat gaaggaattg agctcaaact caaaggtgaa
    11281 aaactcaagt atgtcagccg tggcggtctg aaattggaga aggccttgca ggttttcgac
    11341 ctagcagttg aggggcaaac gacgattgat attggagcct caacaggtgg ctttacagat
    11401 gtcatgttgc aggctggtgc caagcaggtc tatgctgtgg atgtcggtac caatcaactc
    11461 gcttggaaat tgcgccaaga tgatcgcgtg atcagcatgg aacagtacaa tttccgctat
    11521 gctgagttgg aagatttcga acttggtcaa ccaagttttg cgtccattga cgtcagcttt
    11581 atctcattga gtctgatttt gccagcactc catcgtatat tagtggatgg tggtcaggtt
    11641 gtagccttgg tcaaacctca atttgaggct ggacgtgaac agattgggaa aaatggcatt
    11701 gtcaaggata aatccgttca cttgaaagtc ttggaagatg tgacaaaaat ggccgtggaa
    11761 acaggcttct cagtcaaagc ccttagcttt tcccctgttc aaggcggtca tggcaatatc
    11821 gaatttttag cgcacttaga aaaatcaaca caaccaaacc agattgataa agaggtcata
    11881 acaactacag tctatcaagc acatgaggaa tttaaaaagg atgaataaac gagaacgatt
    11941 agaagtcatt aaagatttgg tagtccgatt tcctattgat acacaggaag aaattgttga
    12001 acgtctagaa gcaatgggtg tcaatgcgac acaagcaacg gtttcacgtg atatcaagga
    12061 acttggcatt attaaggttc catcagcaga taagggatat atttatggtt taccaaaggc
    12121 aggtcttgtt aaggtaaaat cgcagaatgt ttttgaagtc tcagtgatgg ataaaatgat
    12181 taatctccgt ctggtacctg gaagctctgc tgtggtcaaa cgccagattt tggaacaatt
    12241 tcaagaacat gttttttcag tgattgctga tgatgacagt attctgctca ttgttacaaa
    12301 cgaaggtatt atttcgcaaa tcgaacagac ggttagaggg tggtagccat gttactagaa
    12361 gtgtccatta aaaacttcgc cattattgag caggtatcac tgaattttga aaacgggatg
    12421 accatcctat ctggtgaaac aggtgcaggt aaatccatta tcattgatgc catgaacctg
    12481 atgctagggg cgcgtgcgac gacagatgtt atcagacatg gggccgccaa ggctgagatt
    12541 gaagggctct tttcctttga aaatagcaga gctctcgagc aaattttgct tgaacagggg
    12601 attgaagtag ctgacgaact cattatccgc cgtgaaatcc tgcaaaatgg ccgttcggtc
    12661 agccgtgtca atggacaaat ggtcaattta tctgtcttga aacagattgg gcaatattta
    12721 gtagatattc atggtcaaca tgaccaggaa gaattgatga aatcccagca ccatatccgt
    12781 cttttggaca gtttcggaga agatgaattt tggagtctta aagaccgtta tcagacaacc
    12841 tttgatgcct atcgtagtct tcgcaaacga gttcttgaaa agcaaaaaaa tgagcaagaa
    12901 cacaaggcgc ggattgagat gctagaatac caaattgctg aaatcgaagc agcggatttg
    12961 aagtctgggg aagatattca actcaatcag gaacgcgata aactgctcaa ccacaaacaa
    13021 attgcagata cactgaccaa tgcctatgca ctgttagaca atgaagattt ttcaagcttg
    13081 aacaacctac gctcagctat gagtgacttg caaagtctgg aagaatttga tccagactac
    13141 aaacagctct cttctagcct gacagaagct tattatgtcg ttgaagatat aaccaagcgt
    13201 ctcagcgatg tggtcgataa tctagatttt gacggcaatc gtctcatgca attggaaagt
    13261 cgtctggatt tgctcaatac cattacgaag aaatatggtg gaactgtcga tgatgttttg
    13321 gactatttta gtaaaatcag cgaagaatac aatctattga caggcaatga tttatctgga
    13381 gatgatttgg aagttcagct taaaaactta gagaaagaat tggttgaacg agcaggtcag
    13441 ctcagccaat cacgccatga attggcagtt gttttagaag atattattcg ccaagaattg
    13501 caagacttgt atatggagaa agctcgtttc caagttcgat ttactaaagg aaaatttaat
    13561 cgagaaggaa atgaaacagt agaattttac atttctacca acccaggtga agacttcaaa
    13621 ccactggtta aggtagcttc tggaggagaa ttgtctcgct tgatgttggc cattaagtca
    13681 gcctttgccc gtaaagaagg taaaacttct attgtctttg atgaggtgga tacaggggtg
    13741 tctggacgtg tggcccaggc aattgcccag aaaatttata aaatcggaca atatggtcaa
    13801 gtattggcga tttctcatct accacaagtt attgctattg cagattatca gttctttatt
    13861 gagaaaatat ccgacgaaca ttcgactgtt tctcgtgtcc gtctcttgac caaagaagag
    13921 cgtattgagg aaattgccaa gatgttagcc ggtgacaaaa tcacagatgc agcccgtaat
    13981 caagcaaaag aattagtaga aaaaggttag gcgactagcc tttttgctta tgtccaaagt
    14041 ttatttttta gttaaaattt gttataatag atggcaaaat tgaagagaat tgtaggatga
    14101 aatatgtcaa agattaagat tgttacggat tcaagtacga ctattgaacc cagtttggtc
    14161 gaagaattga atataacagt tgttccatta tctgtaatgg ttgacggagt cgtatactct
    14221 gacaacgatt taaaagaagg agaattctta gagctcatgc gtgggtcgaa aaacttgcca
    14281 aaaacaagtc agcccccagt aggactcttt gcggaaactt ttgctgattt ggctaaagat
    14341 ggcagtcaga ttattgctat tctcttgtcg catgccttgt cagggacagt agaagctgct
    14401 agacaaggag caaccctatc aggtgctgat gtgacaatac tcgattcaag ctttacagat
    14461 caggctgaaa aattccaagt tgtagaagca gcacgcatgg cacaagctgg tgccagcaaa
    14521 gaagaaatcc ttgcagctat tgaaacagtc aaagaaaaaa cggaattata catcggtgta
    14581 tcaaccctag aaaatctggt caagggtggt cgtattggac gtgttcaagg gatgctgagt
    14641 agcctactca atatccgtgt catcatggaa atgaaagacc atcagctgac tccgattgtc
    14701 aaaggacgag gtaataagac ctttaaaaaa tggctggaag agttcacggc aactctagca
    14761 gataaaaaag tagccgagat tggtatttcc tattcaggaa cggctgattt tgcaaatgaa
    14821 atgaagagtc aattacaaga gtacgtctca aaagaaattt ctgttttaga gacaggttcc
    14881 atcattcaaa ctcatactgg tgaggatgcc tgggctattt tgattcgtta tgaataacag
    14941 gaagttgatt caaggctttg ttttcttttt tctggcaatt ctagggtcga tttttctatt
    15001 tcatcaactc attcctgttg cctcatctcg catctccaga caagagctta ccgtatcaga
    15061 aaaaatcagt tttcgatatg tggcacttgg tgattctttg acagaaggtg ttggagatac
    15121 aactggacag gggggctttg ttcccttgtt ggctcaatct ctaactaacg attatggtta
    15181 tgaagtagat tataaaaatt tcggagtttc tgggaatacc agtaatcaga ttcttaagcg
    15241 aatgaaggaa gatggagagc tgataagtta cttaaaaaca gcagatctgt taactctgac
    15301 agttggtggc aatgatttgc gcaaggctat tattaaaaac attgccaatc tcaaagtttc
    15361 aacttttgat aagcccgcaa aagattacgg aaaacgattg gatacaatta ttaagacagc
    15421 gcgtaagaat aatccaaatc ttcccatcta tgttgtcggg atttacaatc cactctacct
    15481 caattttcct gaattgacag aaatgcagac aattgttgat aattggaata cgatgacaga
    15541 acagataact gaaaaatatc aacatgtcta ctttgttcca atcaatgatt tgctctataa
    15601 aggattggaa ggggaggctg gtattagtca aaatggtagc caagttacca ataatttact
    15661 gtatgaggaa gacagtttcc atcccaataa tactggatat gagattatga aaaaagcgat
    15721 attggagaga atgaatgaga ccacggaaag ctgggaacct taatatttgg aaatggctat
    15781 ttttagccca gttggcttta ttgattggtt gcggaatagt cctctataca cggattcaaa
    15841 cagatagaga ggatttaaca aagctcgttc agactagtac agaagacaca aaggttggga
    15901 ccttctctac taatagggaa cagctcaacc aaaccctcac taactatcta aaagagtatc
    15961 agacggaaga gttttcctac caattattcg taacgagtca gcaagttgtt tttgaaggca
    16021 gctatcagat ttttggtgtg actatcccac tctatattta ttttcaacct agcaaaatgg
    16081 aagatggcag tattttgtta cggataacag aaatatcagt tggaagttta tccttgccga
    16141 aagcagaggt attagcttat ttacaaaaaa attataaact acctgccttt gtaaaaatag
    16201 actcagaaca agcgcaagta caggttcaac tgacagaact gaagaacaaa tttggtctgt
    16261 atggaaaggc gaatacgatt gatttgtaca acgaccaatt cattgttgat atctacagaa
    16321 aaagacagta aaatagcatt aaaaacttga ccaaacgcct aaaattcggt actatataga
    16381 agtgagtaat aactcagaaa attattggag gacttagcaa atggctaata aacaagattt
    16441 gattgcaaaa gttgcagaag caacttcatt gactaaaaaa gactcagcag cagctgttga
    16501 tgcagtattc ggagcagtag cagactacct tgcagctggt gaaaaagtac aattgatcgg
    16561 tttcggtaac tttgaagttc gtgagcgttc agcacgtaca ggtcgcaacc ctcaaacagg
    16621 tgcagaaatc aaaatcgcag catcaaaagt tccagcattc aaagctggta aagctcttaa
    16681 agacgctgtt aaataattca gcattaaaaa gcccgtcata tcaagctttc tagcttgtcc
    16741 gacgggcttt ttt
//
LOCUS       DASGCC010000037        16681 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.037, whole genome shotgun sequence.
ACCESSION   DASGCC010000037 DASGCC010000000
VERSION     DASGCC010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16681
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.037"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..1610)
                     /locus_tag="U1404_000832"
     CDS             complement(<1..1610)
                     /locus_tag="U1404_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GBS Bsp-like repeat-containing protein"
                     /protein_id="HEM5347804.1"
                     /translation="MFLHVKYIKEMFVKKRTLLFLSLCASALNAQLVQADMVNAPSSQ
                     VSSSQVAETGGQLSVVDEAGQIKAILSNIQGEIIGVTAQFSTETNSGITVTFSMDEQG
                     RYVAVLDRSAFAEEDQVFSLKLTAQLTDGSFQTLSDYSFEWKKDVVSAAEKPTALDNS
                     DATPSKIEEEATSTTTSSTVNSSLTAGATSSTSNSLTRSSSNTIAGSSNGSASVPSAR
                     VSTASSSVNVTQPTGTITIENRNDAQGTFDVRVTNVSSPKDIASVILPTWSQSDDLRW
                     YEATRQSDGSYKLTVNKKDHKYRTGTYTVHLYYKDSSGGLTGAGGTTTHLSEVKPTGT
                     ITIENRNDAQGTFDVRVTNVSSPKDISSVILPTWSQTDDLRWYEATRQSDGSYKLTVN
                     KKDHKYRTGTYTVHLYYKDSNGGLTGAGGTTTHLSEAKPTGTITIENRNDAQGTFDVR
                     VTNVSSPKDIASVILPTWSQTDDLRWYEATRQSDGSYKLTVNKKDHKYRTGTYTVHLY
                     YKDSSGGLTGAGGTTTHLSEVKPTGTIT"
     gene            complement(1648..2688)
                     /locus_tag="U1404_000833"
     CDS             complement(1648..2688)
                     /locus_tag="U1404_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5347805.1"
                     /translation="MKKKAIVKPLLMSGIFLALLGSATLPSGAVPVVAAETSQSTTYH
                     LTDDEKVAVREYIQAKMTIDMQEYRLAFLEGMMEEMASGSAEAAWDEEIADLKANLTA
                     EQVVVLDELEANLIGSIAQHYHYLFETLTVAGKSGREEAAAIVSKYESEDDASTPEAE
                     LAALKYAREVIVELLNKESAAIDNYIAYAEATGQELAGLLESGNSNLESITSATIGYG
                     QALATASQPKFPYDFSEMDRQIAELTASLQSKVEDKSTAKTENTGVQTSQSATNSSNE
                     QDVPGQGGGQISDVTTGKGNISEAGQKKVIPNDNAKVLPKTSGKSSLPLTVLGLITIF
                     AGWLLTKKQEEK"
     gene            complement(2705..3556)
                     /gene="rfbD"
                     /locus_tag="U1404_000834"
     CDS             complement(2705..3556)
                     /gene="rfbD"
                     /locus_tag="U1404_000834"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019780653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEM5347806.1"
                     /translation="MILITGANGQLGTELRYLLDERGVDYVAADVAEMDITDADKVDA
                     FFAEVKPSVVYHCAAYTAVDMAEDEGKELNYKINVTGSENVAKAAAKYCATLVYISTD
                     YVFNGDLPVGKEWQVDDQPDPQSEYGRTKRKGEEAVEKFADKFYTVRTAWVFGNYGKN
                     FVFTMQNLAETRDTLTVVNDQHGRPTWTRTLAEFMVHLVDTKQAFGYYHLSNDAAEDT
                     TWFDFATEILKDTNTKVLPVDSSQFPAKAKRPFNSTMSLDKAKATGFVIPTWQEALEA
                     FYKQEKK"
     gene            complement(3611..4657)
                     /gene="rfbB"
                     /locus_tag="U1404_000835"
     CDS             complement(3611..4657)
                     /gene="rfbB"
                     /locus_tag="U1404_000835"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEM5347807.1"
                     /translation="MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN
                     KANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTN
                     FIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP
                     YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY
                     GEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKD
                     AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSQGLEETIQWYTDNQDWWKAEKE
                     AVEANYAKTQEVIK"
     gene            complement(4845..5330)
                     /locus_tag="U1404_000836"
     CDS             complement(4845..5330)
                     /locus_tag="U1404_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEM5347808.1"
                     /translation="MFQAFLEIAEQLNKLGITPLLMGSVGLERRTGRDWQARDLDIHV
                     PSDPRGWEAPDEERIYRADELIVLMNQLGYVLVDRHEHEFHKDGLSVEFGGLHSLPEF
                     AGVELEDLEELETVGVRYYLPTLEQYLKIYQASSKDSYRAENNNQKDFAKIAYLKEIL
                     R"
     gene            complement(5330..5923)
                     /locus_tag="U1404_000837"
     CDS             complement(5330..5923)
                     /locus_tag="U1404_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018029578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEM5347809.1"
                     /translation="MTENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEK
                     MLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREG
                     ETFGNTYQTVIDASKGIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYA
                     DPSLDIQWENLEEAEVSEADKNHPLLKDVKPLRKEDL"
     gene            complement(5923..6792)
                     /gene="rfbA"
                     /locus_tag="U1404_000838"
     CDS             complement(5923..6792)
                     /gene="rfbA"
                     /locus_tag="U1404_000838"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEM5347810.1"
                     /translation="MKGIILAGGSGTRLYPLTRAASKQLMPIYDKPMIYYPLSTLMLA
                     GIKDILIISTPQDLPRFKDMLGDGSELGISLSYAEQPSPDGLAQAFIIGEEFIGDDNV
                     ALILGDNIYHGNGLTKMLQRAASKEKGATVFGYQVKDPERFGIVEFDADMNAISIEEK
                     PEEPKSNFAVTGLYFYDNDVVEIAKNIKPSPRGELEITDVNKAYLDRGDLSVELMGRG
                     FAWLDTGTHESLLEAAQYIETVQRLQNVQVANLEEIAYRMGYITKEQVYELAQPLKKN
                     EYGQYLLRLIGEA"
     gene            complement(6890..7714)
                     /locus_tag="U1404_000839"
     CDS             complement(6890..7714)
                     /locus_tag="U1404_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEM5347811.1"
                     /translation="MTWVTNQSVVLQALLGGLFTWFCTIMGSAVVFFFKTVSRRLLDT
                     MLGFAAGVMIAASFWSLLAPSIEYAESSYGNLAWIPAAVGFAAGGIFLRLVDAWVPHL
                     HLGNDKDKAEGGGEKDRKNLSKTALLFLAITIHNIPEGLAVGVTFGALASNYSPAAFI
                     GAIGLAIGIGIQNIPEGAALAIPIRTDGASRWKAFYWGSMSAIVEPIAAVIGAFAVTF
                     MTPILPYALSFAAGAMIFVVVEELIPESQTNGNTDIATLGLMAGFIIMMILDVALG"
     gene            complement(7890..8684)
                     /locus_tag="U1404_000840"
     CDS             complement(7890..8684)
                     /locus_tag="U1404_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000881127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEM5347812.1"
                     /translation="MLASQVIERYQAFCPPSLAMEGDVKGLQIGTLNKEIQRVMVALD
                     IRETTVAEAIDKKVDLIIVKHAPIFRPINDLVADNPQTKMYLDLIKHDIAVYVSHTDI
                     DVVEGGLNDWFCELLEIQDTTYLIETAEGQGLGRVGTIAEQTLEELALKVKSVFGLDA
                     VRLVTYGHQAKQYVSRVAICGGSGGSYYHEALAKGADVYITGDIYYHTGQDMLTQGLL
                     AIDPGHHIEALFIKKIAELLEIWKAKEGWDVEILPSTVSTNPFRHL"
     gene            complement(8674..9357)
                     /locus_tag="U1404_000841"
     CDS             complement(8674..9357)
                     /locus_tag="U1404_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HEM5347813.1"
                     /translation="METKLSKRLETVASFVPQGARLVDVGSDHAYLPLFLVEQGRIDF
                     AIAGEVVQGPYQSALQNVEQAGQTEKILVRLANGLGAFEKSDQMTAVTIAGMGGRLIA
                     EILEAGKEKLATIERLILQPNNREDDVRRWLEKNGFRLVAEKILEENGKLYEVLVAES
                     GQMRLSEVEHRFGPYLLEEASPVFVKKWRRELEKLSFALEQVPSERQGDRFAISQKIQ
                     QIQEVVHVS"
     gene            complement(9359..10033)
                     /locus_tag="U1404_000842"
     CDS             complement(9359..10033)
                     /locus_tag="U1404_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HEM5347814.1"
                     /translation="MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFLYQNSS
                     AIESLAPSEIAQATGKTVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKL
                     DVLLTPKQAVEIVQPENDLKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRA
                     ALKEAVFNNKTNWKYIQAILRNWRREGITTVAQVEAKNAEREIQTPKNVTVSSDFLDA
                     MDLWKD"
     gene            complement(10043..10984)
                     /locus_tag="U1404_000843"
     CDS             complement(10043..10984)
                     /locus_tag="U1404_000843"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEM5347815.1"
                     /translation="MPIKIEKSLPAVEILRKENIFVMDSDRASHQDIRPIKILILNLM
                     PQKIVTETQLLRLLANTPLQLEVEFLYMASHESKNTHSDHLKQFYKTFEQVRDSYFDG
                     LIVTGAPVENLPFEEVDYWQELTQVFDWSKTHVYSTLHICWGAQAGLHARYGVPKHSM
                     SRKLSGVYCQEVTNPTSPLMRGFDDEFRSPHSRYTEVREADIAHLSGLTILSQGPEVG
                     LSILASKDLREIYSFGHLEYDRDTLAKEYQRDCIAGKNPHLPENYFKEDDPTSKPSLS
                     WNLPAAQFFTNWVNYAVYQETPYDWHIFEQSAQSASL"
     gene            complement(11088..11600)
                     /locus_tag="U1404_000844"
     CDS             complement(11088..11600)
                     /locus_tag="U1404_000844"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEM5347816.1"
                     /translation="MNLKDYIATIPNYPKEGIEFRDISPLMADGNAYSYAVREIVQYA
                     TDKQIDMIVGPEARGFIVGCPVAFELGIGFAPVRKPGKLPREVISADYEKEYGVDTLT
                     MHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELDDLKGREAIG
                     DYDYKVLMHY"
     gene            complement(11654..12784)
                     /locus_tag="U1404_000845"
     CDS             complement(11654..12784)
                     /locus_tag="U1404_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3114 domain-containing protein"
                     /protein_id="HEM5347817.1"
                     /translation="MAMWSRLMTVEALVVVGVIGTLLYTYWFIRQKSLLKNLEQITEI
                     KHALIELRRVGWSERAIKKVFLKQLLPLKQEDIPAFVQNFIKETTIFASTSFYQLIRV
                     DSRSLSQEKATALLEQSMNMLDFPEELSHGILPELLQKMDVNCPPHHPFWRYFAKLVD
                     KVFPVRELEVKRPLNRQVHQLRYFISYQQAFLVRQQFGKEKTDWQALIAYLRSLPRWF
                     YRLRESARLHNKQLFGKKNQKTLPVNMKILIHFHSEFILNQDGQFALILEERPHVNGV
                     VNGASFNYARANNKRHRQLDMAPVGRQDPVFRKELLRSKMGVYLSPTRFRRYQKGRNE
                     VGWEQSYFNQQGSFSYGGHSRAACVANLRRRFAKDIGLKCTK"
     gene            complement(12763..14976)
                     /gene="recJ"
                     /locus_tag="U1404_000846"
     CDS             complement(12763..14976)
                     /gene="recJ"
                     /locus_tag="U1404_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEM5347818.1"
                     /translation="MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSA
                     EELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASILK
                     ETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
                     EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHA
                     DLLDLVAIGTIADMVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEET
                     VGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEA
                     KTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAV
                     DIFKALKDHQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVL
                     DEELDLEELTLDTLKSFEKLAPYGRDNKKPVFYIRDFQVESARTMGQNNAHLKLRISK
                     GAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYN
                     IRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIA
                     KPYYLDGYGSREQFAKLYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELE
                     FVTITDGVMRVNKDAQKREISESQIYQELKETVIQQELMALGTVQEIYEWLCGRV"
     gene            complement(15132..16679)
                     /gene="cls"
                     /locus_tag="U1404_000847"
     CDS             complement(15132..16679)
                     /gene="cls"
                     /locus_tag="U1404_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM5347819.1"
                     /translation="MEKLWKIIYSRTFIVISLIILTIFLILWLVGSAATYMPALLIIL
                     QIFSIFVAISIINRPMNTSFKLTWIIFVIGIPIFGALFYFILQSNIETKRYRKNFHKQ
                     AQRLREYNKTSEKVMKALEQEDKEQLKLAHFMSEYVGYPIHTNTDAVYFSTGQEKFEA
                     LLEELKKAEQYIFMEYFIVDMGYMWDSILDILKEKAAQGVEVRFMYDGMNSLTNLPYN
                     YYKTLRKYGIKAKVFSQIIPALSTVQNNRDHRKIAIIDGKVAFTGGINIADEYINKKV
                     RFGYWKDAAIMIRGEAVANFTLMFLQMWNYNEKTETDDLKYLKTHKDLETETVDAEGF
                     FLPYGENPFDGDEVAKRVCLDMIQSATDYIYIMTPYLVLDDEMIDNLTYAAKRGVEVR
                     ILLPHIYDKKSAYLAARTDFPTYLEAGIEIFEFQPGFVHSKVVLVDDKKATVGTVNMD
                     FRSFYLNFECGLYIYNHSAVLAAIKDDFTHSFKKSQQINLLTFHKTYSWYKRLGGALL
                     RIISPLL"
BASE COUNT         4762 a         3826 c         3096 g         4997 t
ORIGIN      
        1 attgtgatgg tacctgtcgg cttcacttct gataaatgag tcgttgtacc acctgcacct
       61 gttaggccac cacttgagtc cttataatat aagtgaaccg tgtaggtacc tgtacgatac
      121 ttatggtcct tcttattaac agttaactta tagctgccat ctgactgacg agtagcttca
      181 taccaacgta aatcatccgt ctgtgaccaa gtgggtaaga taacacttgc tatatctttc
      241 ggtgatgaaa cattagtaac acgaacatca aaggtacctt gggcatcatt acgattttca
      301 attgtgattg tacctgttgg cttcgcttct gataaatgag ttgttgttcc accagcacct
      361 gtcaaaccac catttgaatc cttataatat aagtgaaccg tgtaggtacc tgtacgatac
      421 ttatggtcct tcttattaac agttaactta tagctgccat ctgactgacg agtggcttca
      481 taccaacgta aatcatccgt ctgtgaccaa gtgggtaaaa taacacttga tatatctttc
      541 ggtgatgaaa cattagtaac acgaacatcg aaggtgcctt gggcatcgtt acgattttca
      601 attgtgatgg tacctgttgg cttcacttct gataaatgag tcgttgtgcc acctgcacct
      661 gttaggccac cacttgagtc cttataatat aagtgaactg tgtaggtacc tgtacgatac
      721 ttatggtcct tcttattaac agttaactta taactgccat ctgactgacg agtggcttca
      781 taccaacgta aatcgtctga ctgggaccaa gtgggtaaaa taacacttgc tatatctttc
      841 ggcgatgaaa cattagtaac acgaacatcg aaggtgcctt gggcatcgtt acgattttca
      901 attgtgatgg tacctgttgg ctgtgtaaca ttgaccgaac tggaagctgt actgactcga
      961 gcacttggaa cacttgcaga gccattcgaa cttcctgcaa tcgtatttga agaacttctt
     1021 gtcagcgaat tcgaagtact acttgttgca cctgctgtca aactagaatt aaccgttgag
     1081 cttgtagtag tcgaagttgc ttcctcctca attttagacg gagttgcatc actattatcc
     1141 aaagcagtag gcttctcagc cgcgcttacg acatccttct tccactcgaa actataatct
     1201 gataaggtct gaaaacttcc atctgttaat tgtgctgtta acttcagcga aaagacttgg
     1261 tcttcctccg caaatgcaga ccgatccaaa accgctacgt atctaccctg ctcatccatt
     1321 gagaatgtga cagtaatgcc gctatttgtt tcagtgctaa actgggctgt aacaccaata
     1381 atttcccctt gaatgttcga tagaatagct ttaatctgac cagcctcatc aacgacagat
     1441 aactgcccgc cagtttcagc aacctgagat gaagaaactt gactagatgg ggcatttacc
     1501 atatccgctt gaacaagctg agcattcaac gcggatgcac acaaagaaag aaataataac
     1561 gttctttttt tcacaaacat ctcctttatg tatttcacat gtaaaaacaa ctatatttct
     1621 caaaatagat gcaattacac taatcttcta tttttcttct tgcttctttg tcaataacca
     1681 accagcaaaa attgttatga gtcctagtac agttaatgga agactagatt tccctgaagt
     1741 ttttggcaat accttagcat tatcatttgg gataaccttt ttctgacctg cttcggaaat
     1801 attgcctttg cctgtagtta catcagaaat ctgaccgccc ccttgacctg gaacatcctg
     1861 ctcatttgag ctatttgtag cgctttgact tgtttgtacc ccggtatttt cagtcttagc
     1921 tgtactttta tcctcgactt ttgattgtag actagcagtt agttctgcaa tctgtcggtc
     1981 catttctgaa aagtcatacg gaaattttgg ttgcgaagca gttgcaagag cttgaccata
     2041 tcctatagtt gcagatgtaa tagattctaa attagagttt ccactttcca ataatccagc
     2101 taattcttgt ccagttgctt ctgcataagc aatataatta tcaatcgctg ccgactcttt
     2161 attcagtagt tcaacgataa cttctctagc gtatttcaat gcagccaatt cggcttcagg
     2221 agtacttgca tcatcttcag actcgtactt agaaactata gccgccgctt cttctcttcc
     2281 gctttttcca gcgactgtaa gtgtctcaaa taagtaatgg taatgttggg ctatgctacc
     2341 aattaaattt gcttcgagtt catctaaaac aacaacttgc tctgctgtta agtttgcctt
     2401 caagtctgca atttcttcat cccacgcagc ttcagcacta cccgaagcca tttcttccat
     2461 cattccctca agaaacgcca atctatattc ttgcatatcg atagtcattt tagcttgaat
     2521 atattcacgt acggcaactt tttcatcatc agttaaatga taggtcgtac tttgacttgt
     2581 ctctgctgct acaactggaa cagctccgga cggtagtgta gcacttccta gtaaagccag
     2641 aaaaattcct gacatcaaca acggcttaac aatcgccttc tttttcatac acatctcctg
     2701 tagactattt cttttcttgt ttatagaatg cttccaatgc ttcttgccaa gttgggatga
     2761 caaaacctgt cgcctttgcc ttgtccaagc tcatggttga gttgaatgga cgttttgcct
     2821 tggctgggaa ctggctagaa tccactggca ataccttggt gttggtatcc ttgaggattt
     2881 ccgtcgcaaa gtcaaaccaa gtcgtatctt ctgctgcatc gtttgacaaa tggtagtaac
     2941 caaatgcttg cttggtgtcc accaagtgta ccatgaattc cgcaagggta cgggtccaag
     3001 ttggacgacc gtgttggtca ttgacaaccg tcaaagtatc gcgggtttcc gcaagatttt
     3061 gcatagtgaa aacaaagttt ttaccgtagt taccaaagac ccaagctgta cgaacagtgt
     3121 agaatttgtc agcaaatttc tcaactgctt cctcaccctt gcgcttggtg cgaccgtatt
     3181 cagattgagg atccggttgg tcatctactt gccactcttt gccgactggc aaatcaccat
     3241 tgaagacata gtccgttgag atgtaaacga gggtcgcaca gtatttagcg gctgccttgg
     3301 caacattttc agagcctgtt acgttaatct tgtagttgag ttccttgcct tcatcctctg
     3361 ccatatcaac agctgtgtag gctgcacagt ggtatacaac gcttggcttt acttctgcaa
     3421 agaaggcatc tactttatct gcatccgtga tgtccatttc tgctacgtca gcggcaacgt
     3481 aatcaacacc acgctcatcc aagagataac gcaattctgt acccaactga ccatttgcac
     3541 ctgtaattaa aatcatattt gctccttatt tcaagaaagg cttgggcaag agccctagcc
     3601 tttaataatc ttatttaata acttcctgtg tcttagcata gttggcttca acagcttctt
     3661 tttcagcttt ccaccagtct tggttatctg tataccactg gatagtctct tccaaacctt
     3721 gagagaagtc tgtgaattgt ggtgtccaac caagctcgtc acgaagtttg cttgcatcaa
     3781 tagcatagcg caaatcgtgt cctgcacggt cagtcacgtg gtcgtaagca tcttttggtt
     3841 gacccatttt ttcaagaatc aattcaagca cttctttgtt gttcttctca ccgtcagcac
     3901 cgattaggta agtttcaccc atacggcctt ttgtcaagat tgcccaaaca ccagtcgagt
     3961 ggtcgttggt atgaatccag tcacggacgt ttttaccttc accgtaaagt tttggcttaa
     4021 tacctgccaa gatattggtg atttggcgtg ggataaattt ctcgatgtgt tggtaaggac
     4081 cgtagttgtt tgaacagttt gagatagttg ctttgacacc aaatgaacgc acccatgctt
     4141 tgacaatcaa gtctgaagca gctttggttg atgagtaagg tgatgacggg ttatagttgg
     4201 tttccgcagt aaatttctcg cctggacctt cgccatgacc tggcaaatct tcacgcaaag
     4261 gaaggtcacc gtatacttcg tcggtcgata catggtggaa acggatgtcg tatttacgag
     4321 ccgcttcaag caaagtgtaa gtaccgataa agttggtatg gataaatggg cttggatcgt
     4381 tgagagagtt gtcgttgtgg ctttctgccg catagtgaac gatggcatct gccttagcag
     4441 ccaatttgtc aaccaactca gcatctgcaa tgtcgccaac aaccagctca acacggtcac
     4501 caagaatagc ttccaagtta gccttgtttc ctgcataagt aagtttatcc aaaacagtta
     4561 cgtgaacgtc tggatgattg ttatatacat agtgtacaaa gtttgaaccg atgaaaccag
     4621 ctccaccagt cacgataata tttttaaatt gagacatttt tttctccgaa aagttttttc
     4681 ttttttgtgt gtcatcttag gttgtggggt cgtaagcaac caccaaggtg tttcattact
     4741 aaaccatgag cctaaggtcc catggtttcc cccgctcctt agcaaagcaa aggagcttct
     4801 cactacggcg atgacacaca gaactgctcg cttcgctcgc ttttttacct caagatttcc
     4861 ttcaagtaag caatcttagc aaagtctttt tgattgttat tttctgcacg gtaggaatct
     4921 tttgaagagg cttggtagat tttcaggtat tgttcaagtg tcggtaggta atagcgaaca
     4981 cctactgttt ctagttcttc caaatcttct agctctacac cagcaaattc aggcagtgaa
     5041 tgtaggcctc cgaattccac agataagccg tctttatgaa attcatgttc atgacgatca
     5101 accaggacat agccaagttg attcatcaga acaatcagct catctgcacg gtaaatccgc
     5161 tcctcatctg gcgcttccca tccccgtggg tcactgggca catgaatatc aagatccctt
     5221 gcctgccaat ctcgtcctgt ccgcctttcc agaccgacag aacccattaa caagggagtg
     5281 attcctaact tgtttaactg ctctgctatt tccaaaaagg cttgaaacat tagaggtcct
     5341 cttttctcaa aggcttcaca tctttgagga gtgggtgatt tttatctgct tctgaaactt
     5401 ctgcttcttc taggttttcc cactggatgt caaggctcgg gtcagcgtag ttgacgaagg
     5461 catacttagg cttaagctcc aaagcccagt agtcgttgac caagtagctg taagccacga
     5521 aatctgacaa gacttggaaa ccattggcta ctccgcgcgg aacgaagata ccttttgaag
     5581 catcgataac ggtttggtag gtattaccga aggtttcgcc ttcacgtaga tcgacccaag
     5641 ttcccaaaac cttaccgccg tctgctactg aaatgtattt atcccaaggc tctgcgtgaa
     5701 gaccacgaag aacgttttta cgagagaagg aaacattatt ctgcaatttt ccttctgcaa
     5761 agaagctttc aggaaagccg agaggcaaca ttttttcctt ttggaagttc tccttgaacc
     5821 agccacggtt gtcgccatga acaggaatgt cgaattctaa cattcctgga atagcttcaa
     5881 ctgggcgagc tgctagtgtt ttaccgaaaa agttttctgt cattaagctt ctccaatcaa
     5941 acggagcaag tattgtccgt attcattttt cttaagcggt tgtgccaatt catacacttg
     6001 ttcttttgta atgtagccca tgcggtaagc aatttcttcc aagttagcca cttgaacgtt
     6061 ttgcaaacgt tgaaccgttt cgatgtactg tgcagcttcc aagaggcttt catgcgtacc
     6121 tgtatccaac caagcaaatc cacggcccat caattcaact gataaatcac ctcgatctaa
     6181 gtaagccttg ttgacatctg tgatttccaa ctcgccacga ggtgaaggct tgatattttt
     6241 cgcaatctcc acaacatcat tgtcatagaa ataaagacca gtaacagcaa aattcgattt
     6301 tggctcttca ggtttttctt cgatagagat ggcattcata tcagcgtcaa actcaacaat
     6361 accaaaccgt tctggatctt ttacttgata accaaagaca gtcgctccct tttctttgct
     6421 agcagcacgt tgcaacatct tggtcaaacc atttccgtgg tagatgttat caccaagaat
     6481 caaggctaca ttgtcatcac cgataaattc ttcaccgata ataaaggctt gcgccaaacc
     6541 atctggactt ggttgttctg catatgaaag tgaaattcca agttcagaac catctcctaa
     6601 catatcctta aaacgtggaa gatcttgcgg agttgaaata atcaaaatat ctttgattcc
     6661 agccaacatc aatgttgaca atggataata gatcattggt ttatcgtaaa ttggcatcaa
     6721 ctgttttgaa gctgcgcgcg tcaaaggata caagcgtgta cctgacccac cagctagaat
     6781 aatacctttc atataagagt accttcccta aattaatatc agttcattat accatatttt
     6841 taaagatatt gtcataagaa aaaagcctgt gacgacagac tttaacaaat tatcctagag
     6901 caacatccaa aatcatcatg atgataaaac cagccattaa gcccagagtt gcaatatccg
     6961 tattgccgtt tgtctgcgat tctggaataa gctcctctac gacgacaaaa atcatggctc
     7021 ctgccgcaaa ggagagggca taaggtaaaa taggtgtcat aaaggtgacc gcaaaagccc
     7081 cgatgactgc tgcaatcggc tcgacaattg ctgacattga tccccagtaa aaagctttcc
     7141 acctagatgc gccgtctgta cgaattggaa tagctaaggc tgcaccttca ggaatatttt
     7201 gtataccgat cccaatagca agaccgattg cgccgataaa agctgctgga ctatagttag
     7261 aagctagtgc accaaatgtc acaccgaccg ccaagccttc aggaatattg tgaattgtaa
     7321 tagctaagaa gagcagggct gttttggata gattttttct atccttctca ccaccacctt
     7381 ctgccttatc tttatcattt cccaaatgca aatgcggaac ccaggcatct accaagcgta
     7441 aaaaaatacc acctgctgca aaacctactg ctgctggtat ccaagccaga ttaccgtatg
     7501 aactttcagc atactcaatc gatggggcta ataaagacca aaaagaagcc gcaatcataa
     7561 caccagctgc aaagcctagc atggtatcta gcaaacgacg actaactgtc ttaaagaaaa
     7621 atacaacggc agaccccata atcgtacaaa accatgtgaa taaaccacct agcaaagcct
     7681 gtagaactac agactgatta gtaacccaag tcataactaa catcctatcc tgtttaatct
     7741 tgcatatcct ataaagtaag ataccctaat ttattataaa attcaagctt tttcacttaa
     7801 ataaataaga aaatatctaa aaaataaaag acctaaaact acattaaatg tcgtcttggt
     7861 ctttccacaa tcaagtgctg attaatttat cacaaatgtc taaacggatt ggttgaaaca
     7921 gttgaaggta gaatttcgac atcccaacct tcttttgcct tccatatttc caacaattca
     7981 gcaattttct tgataaataa tgcttcgata tgatggcctg gatcaatagc cagcaagccc
     8041 tgagtcagca tgtcctgccc agtatggtag taaatatcgc ccgtgatgta aacatctgcc
     8101 cccttagcaa gagcctcatg gtagtaagac ccaccactgc ctccacagat ggctacacgg
     8161 ctgacatact gcttggcttg gtgcccatag gtcactagac ggacagcatc tagaccaaag
     8221 acagacttga ctttcaaagc caattcttcc aaagtctgct ctgctattgt ccccacacgg
     8281 ccaagcccct gcccctcggc agtttcaatc aagtaggtag tatcttgaat ttctaatagt
     8341 tcacagaacc agtcgttgag accaccctca accacatcaa tatctgtatg actaacatag
     8401 actgcaatat catgcttaat caaatcaaga tacattttag tttgcggatt gtcagccacc
     8461 aaatcattta ttggacgaaa aatcggagcg tgcttgacta taatcaaatc taccttttta
     8521 tcaatcgcct ctgccactgt tgtctcacga atatccagag ccaccatgac acgttgaatc
     8581 tctttattaa gggtaccgat ttgcagccct ttgacatcgc cttccatagc caaagaaggg
     8641 ggacaaaagg cttgatagcg ctcaataacc tgactagcta acatggacta cctcctgaat
     8701 ttgttggatc ttttgggaaa tggcaaagcg gtcaccttgg cgttcagatg gaacttgttc
     8761 caaagcaaaa cttaattttt caagttctct tctccacttt ttgacgaaaa ctggtgaggc
     8821 ctcctctagt agatagggac caaaacgatg ttcaacttct gacaatctca tctgtcctga
     8881 ttctgcaacg aggacttcat ataacttgcc attttcttcc agaatctttt cagcaaccaa
     8941 tctaaaacca tttttttcca accatcgacg cacatcatct tcacgattat ttggctggag
     9001 tatcaaacgt tcaatggtcg caagcttttc ttttcctgct tctaagattt ccgcaatcaa
     9061 gcgtcccccc atacctgcta tggtcacggc agtcatctgg tcagacttct caaacgcgcc
     9121 taagccattt gccaaacgga ctagaatttt ctctgtttgt cccgcctgct ctacattctg
     9181 gagcgctgac tgatagggac cttgaacgac ttcccccgca atggcaaaat caatacgccc
     9241 ctgctctacc aaaaaaagag ggagataagc atggtcactc cctacatcaa ctagacgtgc
     9301 cccttgtggg acaaaacttg cgactgtttc cagcctttta gataattttg tttccatatc
     9361 aatctttcca gagatccatt gcatcaagaa agtcacttga aacagtcaca ttcttaggag
     9421 tctggatttc tctttctgca tttttcgctt ctacttgcgc aactgtagta attccctcac
     9481 ggcgccagtt tcgtagaata gcttggatgt atttccaatt tgttttgttg ttaaaaacag
     9541 cttctttcaa ggctgcacga accaaatcaa tcgaagtttt gtcatcctca atagtcttct
     9601 gcaaatcttc aatttcaaac ggcgataaaa agcggcccaa ttcacgttca aaatcaccca
     9661 ccaaggtctt caaatcattc tctggttgca caatctcaac tgcctgtttt ggagttaaca
     9721 gaacatccaa tttttcaaaa gcaggaagcg catcgaatat catttcaatt tcaccagcaa
     9781 tactgattgt cttaaattct aagagtccag catcttggag attttcaata gcttgattga
     9841 cctgagcaac tgttttacca gtagcttgag caatctcact aggcgctaat gattcgatag
     9901 ctgaagaatt ttgatataag aaaaactgcc aaatcaaaaa atcatctgcc gacggaaaaa
     9961 gctcttgata gtggaataat attgctgctg gcaggaccaa atgtccctga cgaaattgct
    10021 gtgaatagtt catacttcct ctttaaagac tagctgactg ggctgattgt tcaaagatat
    10081 gccagtcgta tggagtttct tgatagacag cataattcac ccagttggta aagaattgtg
    10141 ctgctggtaa attccaagag agagatggtt tgcttgtagg gtcatcttct ttgaaataat
    10201 tttccggtaa atggggattt tttccagcta tacaatcacg ttgatattcc ttagctagtg
    10261 tatccctatc atactctaaa tgtccaaaac tataaatttc tcttaaatcc ttgctggcta
    10321 gaatggatag accaacttct ggaccttgtg ataaaatcgt caacccactc agatgggcaa
    10381 tatctgcttc tcttacttcc gtataacggg aatgtggtga acgaaattca tcgtcaaatc
    10441 cacgcataag agggctcgtt ggattagtca cttcttgaca atatacccct gatagttttc
    10501 gagacatact gtgtttgggt acaccatagc gtgcatgcaa acctgcctgt gcaccccaac
    10561 aaatgtgcaa tgttgaataa acatgtgttt ttgaccaatc aaaaacttga gtaagttctt
    10621 gccagtaatc aacttcctca aaaggtaaat tttcaactgg tgctcctgtc acgatgagcc
    10681 catcaaaata gctatccctg acctgctcaa aagtcttata aaactgcttc aaatggtccg
    10741 agtgtgtatt tttggactcg tgactagcca tgtagagaaa ttcaacctct agctgtaaag
    10801 gagtgttagc caaaagacgg agcaactgag tctccgtcac tatcttctgt ggcatgagat
    10861 tgagaataag gattttgata ggacgaatgt cctgatgact ggctcggtca ctatccatca
    10921 caaaaatatt ctcttttctc aaaatttcaa ctgctggtaa tgatttttca attttaattg
    10981 gcataagcaa cctcccaatt ttcttatatt tattataaga caggttgcta tgcaattcaa
    11041 ttagaataaa aataggacca gttataagtt ttggctataa ccttagatta atagtgcatc
    11101 aaaaccttgt agtcgtaatc accgattgct tcgcggcctt tcaaatcatc tagctcaatc
    11161 aagaaggcac agccagcaac gataccgcca agcttttcaa tcatttcgat cgttgctttt
    11221 acagtaccac cagttgccaa caagtcatca acgataagaa cacgttgacc tggcttaatc
    11281 gcatccgcat gcatcgtcaa tgtatctaca ccatattctt tttcatagtc agctgagata
    11341 acctcacgtg gtaacttacc tggcttacga actggtgcaa aaccgattcc caattcaaaa
    11401 gcaactggac atccaacaat gaaaccacgc gcctctggcc caacaatcat atcgatttgc
    11461 ttatctgtcg catactgaac gatttcacgt actgcatagc tataagcatt tccatctgcc
    11521 atcaaagggc taatgtcacg gaattcgata ccttcttttg gatagttagg aattgttgcg
    11581 atgtaatctt ttaagttcat ttgtctctct ctttttaaaa ataattttta ctcttcatta
    11641 taccatgaaa ttgttatttg gtacatttca gacctatatc tttagcaaat cgtctcctca
    11701 aattcgccac acaagctgcc ctgctatgcc caccatagga aaagcttcct tgctgattaa
    11761 agtaagactg ctcccagcca acttcatttc ttcctttttg gtagcgacga aagcgagtag
    11821 gcgataaata gactcccatc tttgagcgta gcaattcttt ccgaaaaacg ggatcctgcc
    11881 tgccaactgg agccatatca agttgtctat gacgcttatt attagctctg gcataattaa
    11941 aggaagcacc gtttaccacg ccattgacat gaggtcgttc ttctaaaatc aaggcaaatt
    12001 gtccatcttg atttaggata aattcactgt gaaaatgaat caaaatcttc atattgactg
    12061 gcaaagtctt ctgatttttc ttgccgaaca gttgtttatt gtgtaggcgg gcagattctc
    12121 gtaagcggta aaaccatcga ggtaggctac gtaaataggc tatcagagcc tgccaatctg
    12181 ttttttcttt tccaaactgc tgacgtacca aaaaagcttg ctgataggaa ataaagtagc
    12241 gcagttggtg gacctgtctg tttaacggcc gtttgacttc taattcccgc actggaaaaa
    12301 ccttatcaac tagcttagca aagtaccgcc aaaacggatg gtgtggagga caattcacat
    12361 ccatcttctg caaaagttca ggtaatatcc cgtgacttaa ttcctcagga aaatctaaca
    12421 tattcatact ttgctccaat aaagccgtcg ctttctcttg gcttaaagag cgactgtcaa
    12481 ctcttatcaa ctgataaaag ctggtcgagg caaaaatagt agtttctttt atgaaatttt
    12541 gaacaaatgc tgggatgtct tcttgtttta gaggcaacag ttgtttcagg aaaacctttt
    12601 tgatggctct ttctgaccat cctactcgcc gtaactcaat cagtgcgtgc tttatttcgg
    12661 ttatctgttc aagatttttc aacagacttt tttgcctgat aaaccaataa gtgtagagaa
    12721 gcgttccaat cactccaaca acaaccagag cttctactgt catcaaacgc gaccacatag
    12781 ccattcataa atttcctgaa cggtgccaag cgccatcaac tcttgttgga taactgtttc
    12841 tttcaattct tgatatattt gactttctga aatctctcgc ttctgtgcat ctttgttgac
    12901 ccgcatgacc ccatccgtaa tcgtgacaaa ttctaattct tggaaaatct gaatcatttt
    12961 aaccaataga ctgtccttaa tttttaagta aacagccaaa tctttcagtt tgtagcgaac
    13021 atcaaactca tcaaattggt aaatagtctt atacaattta gcgaattgtt ctcggctacc
    13081 ataaccatct agatagtacg gtttggcaat ttcgttttta aaataaatgg cttcaaattc
    13141 tctttcctga aaatagctac gcagactact gaggtcctca ggcaagttag ccaagacaat
    13201 tgctttgtta tctgctactg gattttcaat atccaaaatt gggactccag caggaatagg
    13261 atgttgcttt ccacgaatat tataaagttg aacaccattg acccgagcat caaccaacat
    13321 gagctgaaga ctggtattgc cattccattg attgacagac aaggtgacag ctagttctaa
    13381 gcccttggcc tgtgaaaatt ccaaggctag attgccctta ccaaaagcaa ccacatcaaa
    13441 acctgccgca cctttactaa tgcgtagttt caaatgggca ttattctgcc ccatggtcct
    13501 tgctgattcc acctgaaagt ctctgatgta gaatacaggc tttttattat ccctgccgta
    13561 aggcgcaagc ttctcgaaag attttagagt atctagggtt aattcctcta aatccaattc
    13621 ttcatctaag accagcgaag acttgctgga taaatccaat ttattttcga taatgtagtc
    13681 tgtcaaggtc agagcaagtt cttcaagttt gtcaacttcc aaggtcatac ctgctgcacc
    13741 agcatgacca ccaaaggcga taaataggtc ctgatgatct ttaagagcct tgaaaatgtc
    13801 aactgcttca accgaacgag ccgacccctt tgccttacca tcttcaatag acaagacgat
    13861 aacaggttgc tgcaattctt ctagtaggcg tcctgctaca atccctaaaa cacctgggtt
    13921 ccaaccttct ttagccagaa cttgaaccgg tctatcctga cggagcatgg tttttgcttc
    13981 atcgtaaatt gcttggacga cgtctttgcg ttctacattt ttactgtcaa tcatgagagc
    14041 aatttgatgg gcctcttcgt catcaaaacc agtcagtaat tcgatggctg gattaggatc
    14101 gtcgagtcga ccaagggcat tcaacctcgg agcaagttgg aaaccaactg tttcttcatc
    14161 aatactgtct atgtcaatac cagctatctt tatcaactct tgcaaacctg ctcgctcagt
    14221 ctgtttgaga agcgagagac catatttgac catgacacga ttctcatcgg tcaagctaac
    14281 catatcagcg atggtgccaa ttgcgaccaa atccagcaag tctgcatgaa cagtttcaag
    14341 aagagcacag gccaatttaa aagccacacc gcagcccgcc aaatgtttga agggataatt
    14401 tccctctgga tgctctggat gtacaatcgc ataggcattg ggaagggttt cctgcatgga
    14461 atggtggtct gtcacgacaa catcgacacc catttcctgg gcataggcaa tcgcttcatg
    14521 acccgctacg ccattgtcca ccgtcacaat aagagaaatc ccctgttgct cgataaaata
    14581 cttgtaaact gactgattcg gcccatagcc atctgtgaaa cggttgggaa gataaacttg
    14641 gacttctgcc cccatttcct ccaaagtttc tttcagaata gatgccgagg tcatgccgtc
    14701 tgcgtcataa tctccataaa tcaaaatttg ttcgtaatct tcgattgctc ggcgaatccg
    14761 ctctaccgcc ttgtccatat catgtagtaa atagggatcg tgaagatctt ctaagcttgg
    14821 ttgtaagaaa gtatgcaatt cttccgccga atggatgcca cgttcataca gcaacttagc
    14881 cgctaccggg tccactcctt cttttttagc aattttgata aattgttcat cagaaaaacc
    14941 ggtcaataat tgccagtcat aattgggttt tatcacgttt tttactcctt aatactcaaa
    15001 atcacaagta gcctgtaaat tttccgagta taaactatct ttctattata tcattttcca
    15061 agaaaaatgg agcaaggtaa gaccgaaaca gaatgtcgat cccttgctcc atgaagaacg
    15121 aatattgcaa tttataataa cggcgaaata attcgtagta gggctcctcc caaacgctta
    15181 taccaagagt acgttttatg gaaggttaga aggttaattt gctgtgattt tttgaaggaa
    15241 tgagtaaagt catccttaat agctgccaaa actgccgagt gattgtaaat atagagaccg
    15301 cattcaaaat taagataaaa agagcgaaaa tccatattca ccgtaccaac agtagctttc
    15361 ttatcatcga ccaaaacaac tttggaatgg acaaatccag gctggaattc aaagatttca
    15421 attcctgctt ccaagtaagt cggaaaatca gtgcgagcag ccaaataggc tgatttttta
    15481 tcgtagatat gcggtagtag aatgcgaacc tcgactccac gcttcgctgc ataagtcaaa
    15541 ttatcaatca tttcatcatc caacactagg tagggtgtca tgatataaat ataatccgtt
    15601 gccgactgaa tcatgtctag gcagactcgt ttggctacct catctccatc aaatggattc
    15661 tcgccatacg gaaggaagaa accttcggca tcaacggttt ccgtctctaa atctttatgc
    15721 gttttgaggt attttaggtc atctgtctct gtcttttcat tgtaattcca catttgaagg
    15781 aacatcaacg taaagtttgc aacagcttct cccctaatca taatcgctgc gtctttccag
    15841 taaccaaaac gcactttctt gttgatgtat tcatctgcga tattaatgcc accggtaaag
    15901 gcaacctttc catcaataat cgcaattttt ctatggtcac ggttattttg caccgtagat
    15961 aaggctggga taatttgaga aaatactttg gcttttatcc catattttcg caaggtttta
    16021 tagtaattat agggaagatt ggtcagtgaa ttcatcccat catacataaa acgaacttcc
    16081 accccttgcg ctgccttttc cttcaaaatg tcaaggatag aatcccacat atatcccata
    16141 tcgacaataa agtactccat gaaaatatac tgctctgcct ttttcaattc ttctagtaga
    16201 gcttcaaatt tttcctgacc tgttgaaaaa tagacggcat ccgtattggt atgaattggg
    16261 tagccaacgt actcactcat gaagtgagct aatttcagtt gctccttatc ttcctgctcc
    16321 aatgccttca tgaccttttc agacgtctta ttatactccc gaagtctttg tgcttgctta
    16381 tgaaaatttt tacgataacg tttggtttca atgttggact gcaaaataaa atagaataga
    16441 gcaccaaaaa tcggaatacc aatgacaaaa ataatccagg ttaacttaaa actggtattc
    16501 atcggtctat tgatgattga aatagccaca aaaatcgaaa aaatttgcaa aataatcaat
    16561 aaagcaggca tataggtagc tgccgaacct accaaccaaa gaataaggaa aatggttaga
    16621 ataatcaaac taatgacaat aaatgtccga ctatatataa ttttccaaag tttttccata
    16681 c
//
LOCUS       DASGCC010000038        16631 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.038, whole genome shotgun sequence.
ACCESSION   DASGCC010000038 DASGCC010000000
VERSION     DASGCC010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16631
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.038"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            66..1346
                     /locus_tag="U1404_000848"
                     /pseudo
     CDS             66..1346
                     /locus_tag="U1404_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365067.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
     gene            complement(1424..2956)
                     /locus_tag="U1404_000849"
     CDS             complement(1424..2956)
                     /locus_tag="U1404_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5347820.1"
                     /translation="MLLATQHLTLDHQKDLRNLVHDLNFIVNPGDKIAIIGEEGNGKS
                     SLLLTLMDSTLVADYLLISGSIHRYFHSPVYIPQGLPLKMAELTLNDYFFGDMGSNID
                     YHLLYLYADQLQFDSERFSSQQLIGSLSGGEKLKIQLIKSLATPSDIIFLDEPSNDLD
                     LDTLLWLENYIITSPKTILFVSHDEDFLSRTATKIIHLESVKKKTLAQTKVEELGYQD
                     YALKRHQAYQKQVQQARNDQKEFDKAMNKHLRQKSQVRHTLLNTHDATLGRLIAKKMK
                     NVLSREKRYERMKENLTQVPFHEDAISLFFSDISPLPARKQVLHLENFQLNIGGRQLV
                     QNIHFNLNGQEKIGIIGQNGIGKSSFLKIIYQKLRQRADINLGYMPQHYTEVLDESKT
                     PLDFLLENGNREQERLILTHLASLQFTRQEVHHKICELSGGQKAKLLLLKMVLEQVNF
                     LLLDEPSRNFSPTSQPYIRQLFADYPGGLVCVSHDRRFLKEVCQRIYRLTENGLEELE
                     QI"
     gene            3256..3747
                     /locus_tag="U1404_000850"
     CDS             3256..3747
                     /locus_tag="U1404_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347821.1"
                     /translation="MAITGIEQADILEIDKQVRLRRYDGQHDFAFEWHQDLELVWLID
                     GDQERYSLDLLDRMYDYLSKNGECYFIEIFEDGQFIPIGDVTLFADDFAIAIGDKRYW
                     EKGIGTKVLHRMIERARDVGLEEILVEEIYDWNTGSHKLFEKCGFEAVEKTKKGWSYK
                     MIL"
     gene            complement(3803..4543)
                     /locus_tag="U1404_000851"
     CDS             complement(3803..4543)
                     /locus_tag="U1404_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004254183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5347822.1"
                     /translation="MAQLKINVHDLHKSYGKNEVLKGITAKFYEGDVVCIIGPSGSGK
                     STFLRTMNLLETITSGQVTVDGYDLTDPKTDVDAFRSNVGMVFQHFNLFPHMSVLDNI
                     TFAPIEHKLMDKSEAEKVGMELLEKVGLADKRDAMPDSLSGGQKQRVAIARALAMNPD
                     IMLFDEPTSALDPEMVGDVLNVMKDLAEQGMTMLIVTHEMGFARKVANRVIFTDGGQF
                     LEDGTPEQIFDNPQHPRLQDFLDKVLNV"
     gene            complement(4543..6741)
                     /locus_tag="U1404_000852"
     CDS             complement(4543..6741)
                     /locus_tag="U1404_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM5347823.1"
                     /translation="MKKKLLMLLASILPVFFIFTGVKADDTIDVVFDNAYAPFEFKDS
                     DQIYKGLDVDIINEVAKRSGWTMTQSFPGFDAAVNAVQAGSADALMAGTTITEARKKV
                     FTFSDPYFDTKIVIATTKANTISSYKDLKGKTVGVKNGTAAQNFLEENKDKYGYNVKT
                     FDTGDLMYNSLSAGAVDAVMDDEAVIQYAIQQGQDLSIDIEGEAIGSFGFSVKKGSQY
                     EYLVEDFNKALAEMKKDGTYETIMNKWLGASTTSAESTDYSSRLSLTGNASAKATPVK
                     SSYTIVADSSFAPFEYQDESGNYVGIDMELIKAIAEQQGFTITIQNPGFDAALNAVQA
                     GQADAVIAGMSITDARKEIFDFSNAYYTSNILLAVKNGSDIASYEDLKGKTVGAKNGT
                     ASYSFLEENKAKYGYTLKAFDEASSMYDSLNSGSIDALMDDEAVLLYAIQQGRNFATP
                     IPGEKSGEYGFAVKKGANPELIEMFNNGLAALVESGKYDEILNKYFNSTEEASTTTST
                     VDETTIVGLLKNNYGQLLSGLGITIGLALLSFAIAIVIGIIFGMFAVSPVKALRVTSS
                     VFVDVVRGIPLMIVAAFIFWGIPNLIESITGQQSPINDFVAGTIALSLNSGAYIAEIV
                     RGGIQAVPAGQMEASRSLGISYGTTMRKIILPQAGKIMLPNFINQFVITLKDTTIISA
                     IGLVELFQAGKIIIARNYQSFRMYAILAIIYLVVITLLTRLARKLEKGGK"
     gene            6942..7601
                     /locus_tag="U1404_000853"
                     /pseudo
     CDS             6942..7601
                     /locus_tag="U1404_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935168.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7598..9583
                     /gene="uvrB"
                     /locus_tag="U1404_000854"
     CDS             7598..9583
                     /gene="uvrB"
                     /locus_tag="U1404_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HEM5347824.1"
                     /translation="MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMG
                     ATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQ
                     PEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
                     DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFR
                     VEFFGDEIDRIREIESLTGKVLGDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQL
                     KIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFF
                     PEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVH
                     QIVYVSATPGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKG
                     ERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGIN
                     LLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMR
                     KAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDE
                     RKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKNM"
     gene            9817..15552
                     /locus_tag="U1404_000855"
     CDS             9817..15552
                     /locus_tag="U1404_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5347825.1"
                     /translation="MSIGLVSAAVASLFFASSVAAAPSASAQSINYSYVTEQELTDAE
                     KELIIRDLPGLAQETDANYYLIYRPATGTTSTPSTSTSQVLPNTGSVETGLLVAGGVS
                     LLLLAVRFGKKGKKELAGVILLTATGASFFGPTSSALTSQILARYNHAIEISAGQALP
                     APAEIDGYVYVGYLKDSKAIEQTTSEEEKTAEFPASEGIRTETIVNKTEAIPFEIQTV
                     ENPQLSAGTERVVQEGQDGERIVTIKQVHSKGQIISEEEISSTVTKTAVPKIVEVGTK
                     QATDDIVTEVPDTEPSYENSTNSLTEETVTHTEVFAFDVQEIYDVNLAEGSREVEQKG
                     QDGVRTIETRNYYADGVLIKSEQVSDVVTKEPVTEVVRVGTKTTDVIGSETIVTTEEL
                     PFETTVTETEELYVGEEKFITEGKVGSKEVTTTYQTINGVSQPNPTVTEKVLEEPTTK
                     EVLKGTKPIEGTEIETNQVEIAFETEYVDDPTLLEGKTKVVTAGVNGSKTVTTTYQTI
                     KGVRQENPTVTEEITKQPVKQVIARGTKVEKVPQVIITDLVENDDAKSATISYKLTDE
                     TANFQRAVALLYDNTGALVQEQTITDPNGQLTLENLDFYTDYTVKTKIFYTMAEQEQS
                     SEQEAILESMRKFDLVYKKIEIKDIDAVTVYRRKNGSYIGQEFLEELPASTDELFIKV
                     TSDRFKEVYLPVSSIEETTLNGKAVFKLVSSFDELVQDKDAQYVANREFYIPKMATDA
                     NTYTSFKALLDAMKANPSGTFKLGAHLDASEVPVGDVASYVTNFSGTLDGLNDGYDFS
                     ISNLKAPLFFNLGGKVQNLDIKNASLNTSSKNPLATIAINANGATITNVAVEASIKGP
                     QNVSGLVHSATNTTIKGVSFKGSIEVTGTNASLTGGILGNGTMASVGNAKVDATITLP
                     GTENQVAGGIVGRTMLVYDVPGSVYNSYAAGSIVTTESAAIVGGIAGANQVTGAYAPH
                     SGNVNNVVSDMTGTKSIIGQPANPTGKIKDGFTTTSDSLTNVTVITDEEAQAKVEAMA
                     IQATIDDSVPLNLNHYSVDYLTLDKAQADHETAYYNMEKILPFYNKELLVYYGNKIAT
                     DDKLNKVRLLDVVPMKDNAVVADVYAEKANINKIMLHYADGTVDYKTVSYLEDFKNNH
                     VVEYTISGTDLIYTPESFLNDRSALVNDLVSSLSSVVLDSDAMKAVINYPTKLNADTQ
                     TGTAKDFYFGDSYNQVMANLESNVRKILVASLNGQGQASEDYIKEKITNNKAAFVLGL
                     TYLNRWYDINFGEMNTKDLTIFEPDFFGNDVASALDMILAIGNGGYDVLRAHNNVTTF
                     ASIIGKQNNQTKLFDMLEDYRQLFLPEMTNNEWFKQTTKAYVVEGKSLIPEVAAKQET
                     TDTYSKYNVGAYSKIVNDTVSNPAWKYNHMLLPLLTLPQENIFIITNMNTIAIGSYEH
                     YVDDYSTVENRDKVRQMVDLAAERQRDNADFWYKILDETNRDKLFRSVLNNEGYVMYG
                     KDGTKSYRNLTADVDAIQDFYGPINKWYREHPSIKTAFADGSETYYITYDMLTDYGTA
                     LYTHEMVHNQDGDIYLKGYGRRIGQGMEVYAQGLLQNVFNVTEMNLGFNAVYNSDDAN
                     RVHVGDPVARFNSEADFNEYYLNQFDVLYLLDYLEGTSILAQSDANKKAWLRNIENYY
                     VQNNGVDTQAGNSVRALTDAEVASLKSFNDLIDQSIIVQRQYVNNPTNTSKKWDRNSY
                     VSVPMFAANFSALSNSNGSPGDIMFRRMAFELIAAKGYTDGFVPYASGQLSDLAMEKG
                     SKIYDTWTKKDVGLITDNLVLEYVFQGQYTSWAEFKKAMFTERLEKAAAGQLKPFTMQ
                     YELDVADSTKEVTITSFEQLENLMKEAMEADIQANSLNLNNSRVHALKVKVYQALMNS
                     TNDFRTSIFNP"
     gene            15626..16129
                     /locus_tag="U1404_000856"
     CDS             15626..16129
                     /locus_tag="U1404_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347826.1"
                     /translation="MMIKPLETKSEILGKAYVHWKSWQEAYADLLPQEFLKKTYTLES
                     CQDWAVRYPKNILIAVMDDKVVGFACYCSSSQEDLQGAGELYALYVLADYYDQKIGYQ
                     LMQAALEKLQSYETVTLWVLEGNARAVAFYEKVGFRFDGVKKTVNLGAERTEYRMIFK
                     QKERENG"
     gene            16122..16589
                     /locus_tag="U1404_000857"
     CDS             16122..16589
                     /locus_tag="U1404_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5347827.1"
                     /translation="MARKEMVTLTNMCLIEDKEGKVVVQIRDPKRYRWSGVAFPGGHI
                     EEGENFHDSVVREVFEETGLTIANARLVGIKHWPDKEGYRYIVFLYKATEFTGTIRST
                     EEGEVRWVEKSDLSQMDLAYDLLEILKVMDEPDLSEFFYTRKNDDGEWDKNFR"
BASE COUNT         4948 a         3165 c         3764 g         4754 t
ORIGIN      
        1 tttaagtatt agtcgagatg gtaaaaatga ggtagaatac agaaaaagac caaaggagta
       61 cctttatgac tagaggattt tcatttgaaa cccttcaact tcatgctgga caagaagttg
      121 attctgcttc aaaataacgt gctgtaccca tctatcaaac cacttcctat gtttttgaag
      181 atgctcaaga agcagaagat ttatttgcat tgcgtaaatc agggaatatc tatactcgta
      241 tcacgaatcc gacggtctct acttttgaaa atcgtgtagc agctttagaa ggtggtattg
      301 atgccttggc cacttcttca ggaatggcag ctatcacata gactattcta ggattagcgc
      361 atgctggtga tcacattgtg gcggcaacga cactctatgg tgggactttt aacctattca
      421 aagaaaccct tcctcgctat ggtattacaa caagctttgt agatattgat gattttgaag
      481 cggtagaagc tgcgattaaa gataatacaa aactggtatt tattgaaacc ttgggaaatc
      541 ctgttatcaa tattcctgat cttgaaaaat tggcagaaat tgcacacacc caccacatcc
      601 cgcttgtttc agataatacc ttcgcaactc catatttgat taatgtattt tctcatggtg
      661 ttgatatctc agttcattct gcaaccaagt ttatcggcgg gcatggtacg accattggcg
      721 gtgtgattgt cgatagcggc aagtttgatt gggcggcatc tggtaagttt ccgcaatttg
      781 ttgaagaaga tccaagctat cataacatta gttatactcg tgatattggt gctgcagcat
      841 ttattgtagc agttcgtgta caattgcttc gcgatacagg tgctgccctt tctccattca
      901 acgccttctt gcttttgcaa gggttagaaa ccttgtctct ccgtgtagag cgtcatgtat
      961 ctaatgctga aaaaattgtt gactttttac ttagtcatcc tcaggtagag tcggtcaatt
     1021 atccatcact tccagatagt ccttataagg ctttggcgga taagtacctg cctaagggag
     1081 ttggctctat tttctctttc caagtaaaag gcggagcaga agaagcccgt aaggttattg
     1141 atagtttgga aatcttttct aatctagcaa acgttgccga tgccaaatca ctagtagttc
     1201 atccagctac aaccacgcat gctcagttag ctccggaaga tttacttgct gctggggtca
     1261 caccaaatca aatccgccta tctgttggtc ttgaaaatat caatgatttg attgaagatt
     1321 tgcaacttgc tcttgataaa ttataggttg tgaatcgaat agcatgactt cattctttat
     1381 gaataaataa aaggaaattt ggcgtgtgtg ccattttcct tttttatatc tgttctagtt
     1441 cttccagtcc attttcagtt agtcgataga ttctttgaca aacttctttc aaaaatcgtc
     1501 tgtcgtgtga tacgcatacc aaaccacctg gataatcggc aaatagttga cgaatatatg
     1561 gctgagaagt aggcgagaag tttcgactgg gttcatctaa taagagaaaa ttgacttgtt
     1621 caagaaccat ttttaacaag agtaacttgg ctttttgtcc ccccgaaagt tcacagatct
     1681 tgtgatgaac ttcttgtcgt gtaaactgca gactggctag atgcgttaag ataagtcgtt
     1741 cctgctcacg attgccattt tctaataaaa aatcaagtgg agttttagac tcatcaagga
     1801 cttctgtata gtgctggggc atgtagccca agtttatatc tgctcgttgc ctgagtttct
     1861 gatagatgat ttttagaaag ctggatttac ctattccatt ttgtccaatg atgccaattt
     1921 tctcttgtcc atttaagttg aaatggatat tttgaactaa ttgtcgccct ccaatgttca
     1981 attggaagtt ttctaagtga agcacttgtt ttctagctgg tagtggtgaa atatctgaga
     2041 agaagaggga aatggcatct tcatgaaaag gaacttgtgt aagattttcc ttcattcttt
     2101 catagcgttt ttcacgtgat aagacattct tcattttctt ggctatgagc cgtcctagtg
     2161 tggcatcatg ggtgttgagc aaggtatgac gaacctgtga tttttgacgt aggtgcttgt
     2221 tcatggcttt gtcaaattct ttttggtcat tccgagcttg ctggacctgc ttctgataag
     2281 cttgatggcg cttcaatgcg taatcctggt agcccagttc ttcaaccttg gtttgagcaa
     2341 gtgttttctt tttaacagat tctaggtgaa tgatttttgt agctgttctg ctaagaaagt
     2401 cttcatcgtg ggaaacaaat agaatggttt taggactagt aatgatatag ttttcaagcc
     2461 aaagtaaggt atctaaatcc aagtcattgg acggctcatc cagaaaaata atatcagatg
     2521 gagttgctag agatttgatt aactgaattt ttaatttttc gccacctgac aggcttccaa
     2581 tcaattgttg actggaaaat cgctcgctat caaactggag ttggtcagca tagagataga
     2641 gtaggtggta atcaatgtta ctgcccatat ctccgaagaa gtagtcgttc aaggttagct
     2701 ctgccatttt caatggaaga ccttggggaa tgtagactgg cgagtgaaaa tatcggtgaa
     2761 tgctgcctga tatgagtagg tagtcggcga caagagttga atccatcaag gttagtaata
     2821 gactagattt gccatttcct tcttccccga tgatggctat tttatcgcca gggttgacaa
     2881 tgaagtttag gtcatgaacc agatttctca aatctttttg atggtcgagg gttaggtgtt
     2941 gagtggctag tagcataagg cctcctttac aagaaaaaac acactaccta tttagtagtg
     3001 tgtcgaaatc tgctcaaaaa gaccctattc aaggaataga gggaacagaa aaatggacgc
     3061 aagaaaacta ctaaataagt atagaactta aattgagttt acttgttatt gtccatttct
     3121 ccttacctcg catactttat ttattttaat atagcatatc gatagaatct tgtcaatcag
     3181 cgtgctataa tattcataga tttcgataga gatatatgtt aaaatgaact tattgtaaat
     3241 gagagaggat ccgaaatggc aatcactgga attgagcaag cagatatttt agaaatagac
     3301 aaacaagtcc gtttacgtcg gtatgatggt cagcatgatt ttgcttttga atggcaccaa
     3361 gatctagaat tggtctggct gattgatggt gatcaagaac gttatagtct tgacttgctc
     3421 gatcgtatgt atgattattt gtctaaaaat ggcgaatgtt actttattga aatttttgaa
     3481 gacggtcagt ttatcccaat tggtgatgtg acgctgtttg cagatgattt tgccattgcc
     3541 attggagata agcggtattg ggaaaaggga atcgggacta aggtgttaca tcgaatgatc
     3601 gagcgtgcaa gggatgtggg tcttgaggaa atacttgtcg aagaaattta tgactggaat
     3661 acgggctccc ataaactatt tgagaaatgt ggctttgaag ctgttgaaaa gacaaagaaa
     3721 ggttggtcct ataagatgat attgtaaatt catttggaga taccaaaaaa accttgatgc
     3781 aagtcaaggc ttttcgttta gcttagacgt tcaagacctt atcaaggaag tcttgtaaac
     3841 gtggatgttg tgggttgtca aagatttgct caggagtgcc atcttcaagg aattgaccgc
     3901 catcagtaaa gataacgcgg ttagcaacct tgcgggcgaa gcccatttcg tgtgtgacga
     3961 tcaacatggt cataccttgt tctgccaagt ccttcataac gttgagtaca tcgccaacca
     4021 tttcagggtc aagggcagaa gttggttcgt caaagagcat gatgtctggg ttcatagcga
     4081 gggcacgagc gatggcaaca cgttgcttct gaccacctga aaggctgtct ggcatagcgt
     4141 cgcgtttgtc tgccaatcca actttttcca ataattccat gccgactttt tcagcttcag
     4201 acttgtccat caatttgtgt tcgattggtg caaatgtgat attgtcaagt acagacatat
     4261 gagggaagag attgaagtgt tggaatacca ttccgacatt tgaacggaag gcatcaacat
     4321 ctgtcttagg atcggttaag tcatatccat cgactgttac ttgaccactt gtaatggttt
     4381 caagtaagtt cattgtacga aggaaggtcg atttacctga accagaagga ccgatgatac
     4441 aaacaacatc gccttcatag aacttagcag taataccttt gaggacctcg tttttaccat
     4501 aagacttgtg taagtcatgg acgttgattt ttaattgagc cattatttgc ctcctttttc
     4561 gagtttgcgt gctaagcgag tcaagagtgt gataactacc aagtaaatga tggcaagaat
     4621 tgcatacata cggaaggatt ggtagttacg tgcaataatg attttacctg cttggaagag
     4681 ttcgaccaaa ccaatcgcag aaatgatagt agtatctttc agagtaataa caaactggtt
     4741 gataaagtta ggcaacatga ttttaccagc ctgtggcaag ataatcttac gcatggttgt
     4801 tccataggaa atacccaaac tacgagatgc ttccatttga cccgcaggaa ctgcctgaat
     4861 accaccacga acaatctcag caatataggc accagagttg agggataggg caatcgtacc
     4921 agcgacaaag tcattgattg gagattgttg accagtaatc gactcgatta agtttggaat
     4981 gccccagaag atgaatgcag cgacaatcat gagcggaata ccacgaacaa catctacaaa
     5041 aacagatgaa gtaacacgga gtgctttaac tgggctgaca gcaaacatac cgaagataat
     5101 accgatgaca attgcaatag caaatgatag aagggcaagt ccgattgtga taccaagacc
     5161 tgagagcaat tgaccgtagt tgtttttcaa aagaccaaca attgttgtct catcaacagt
     5221 tgaagtcgtt gtgcttgctt cttcagttga gttgaaatac ttattaagga tttcatcata
     5281 cttgcctgat tcaactaggg cagctaagcc attgttaaac atttcaatta attctgggtt
     5341 ggcacctttt ttaacggcaa atccgtactc acctgatttt tcgccaggaa ttggtgttgc
     5401 aaagttgcga ccttgttgga tggcatatag aagaaccgct tcgtcatcca taagagcatc
     5461 aatagaacca gagtttaaac tgtcatacat acttgaagct tcgtcgaagg cttttagggt
     5521 gtaaccatat tttgccttgt tttcttctaa gaaactatat gaagcagtac catttttagc
     5581 tccaacagtt ttccctttta agtcttcgta agaagcaatg tcactaccat ttttaacagc
     5641 taataggatg tttgaagtat agtaggcgtt tgagaagtca aatatttcct tacgagcatc
     5701 tgtgatagac ataccggcaa taactgcatc agcttgtcca gcttgaacag catttagtgc
     5761 agcgtcgaaa ccagggtttt gaatggtaat agtaaatcct tgttgttcag cgattgcctt
     5821 gattaattcc atgtcaatcc cgacatagtt acctgattca tcttggtatt caaatggagc
     5881 aaaagaagaa tctgccacaa ttgtgtagct tgatttgaca ggtgttgctt tagctgatgc
     5941 gtttcctgtt aagcttaaac gagatgagta atctgtactt tcggcagaag tggtagaagc
     6001 tcctaaccat ttgttcatga ttgtttcgta ggtgccatct ttcttcatct cagctaaagc
     6061 cttgttaaag tcttcaacaa gatattcata ttggctacct ttttttacag agaaaccaaa
     6121 tgaaccgatt gcttcgcctt cgatgtcaat gcttaggtct tgaccttgtt ggatagcgta
     6181 ttgaataacc gcttcgtcgt ccatgacagc atcaacagca ccagcagaaa ggctattata
     6241 catcaaatcg ccagtatcaa aagtttttac gttgtatccg tacttgtctt tgttttcttc
     6301 taggaagttt tgggctgcag taccgttttt gacaccgaca gtcttgcctt taaggtcctt
     6361 atatgaagag atggtatttg cttttgtggt agcgataacg attttggtgt cgaagtaagg
     6421 gtctgagaaa gtaaatactt tcttacgcgc ttcggtgata gttgtacctg ccattagggc
     6481 gtctgcagat ccagcctgta cagcgtttac agctgcatca aatcctggga agctttgagt
     6541 catggtccaa cctgagcgct tggctacttc gttgatgatg tcaacatcta atcctttata
     6601 aatttgatct gagtctttaa actcgaatgg ggcgtaagca ttgtcaaata cgacatcaat
     6661 agtatcgtca gctttaacgc cagtaaaaat aaagaatact ggcagaatgc ttgccaataa
     6721 catgagtaat tttttcttca tttccatact ccttctatta taaaataact gtcctagtat
     6781 atcatattct gaaaattaat gcaaaattga ggtttttata atgtcagaat ttctgacatg
     6841 caaagtcatt aaaatgtgag aaaatttaat gttttagggc aattgatttt gagtaagttc
     6901 aagcggactt gtggtaaaat agaatagtga aaggaatgag tatgattgtt cgttatagca
     6961 gatgaaaatc tttgttggcc ttgggtctga gtttgttttt tggcttgcca ttgtcttatg
     7021 taacggttga tttatttatc agtttatggg gagaagatgt agcgacagtg atcctcggtg
     7081 ggattttatt tttactgatc tttggcattc caaccttggc ttcacatctg gttattatcg
     7141 tttctataca gcgcctcttt tttggattaa aagcatttga actgacagag aagcactttg
     7201 ttctctatcg gggaatattt cgaagaaaag ctgtgtccat tcctataaac gaaattgagt
     7261 ttatctgcct agaagaacag acactaggag caggcttgag ccgtcttttt ggaaatgttt
     7321 ctgaaaaaac agtagtatct gtagggaaga caatcgcatt tgcgactggg gctaaaacga
     7381 gtgcaagggc cagtttgtct gacacctaca cgcacttatt gatattgttt catgacagtg
     7441 agcgagctgt cttttatgct aaacaatatg gaattaagat aaagaattta ttgaaataca
     7501 cggcggaaac ttcgattctt gatattgaac ccggcccaat tgagcatttt tccgaagaga
     7561 agttgcaaga tttactagaa gaaagaaaac tgaacaaatg ataaatcgaa atactgaaaa
     7621 ccaatttaaa cttgtttcta aatactcacc gtctggtgac cagccccaag ccattgaaac
     7681 cttggttgat aacatcgagg ggggcgaaaa agctcagatt ctcatggggg cgactggtac
     7741 gggtaagacc tacaccatga gtcaggtcat tgcccgtgtc aataagccca ctcttgtcat
     7801 cgcccacaac aagactctag ctggtcagct ctacagcgag ttcaaggaat tcttcccaga
     7861 aaatgcggtc gaatacttcg tatcttacta tgattactac cagccagaag cctatgtacc
     7921 gtctagcgat acctatatcg agaaggacag ttcggtcaat gatgagattg acaaacttcg
     7981 tcattcagcg acttcagcac ttctcgaacg aaatgatgtc atcgttgtgg cttcggtttc
     8041 ctgtatctac ggtttgggat cgcccaagga atattcagat agcgtggtca gcctgcgacc
     8101 aggtcaggag atttcccgtg atcagttgct caactctctg gtagatattc agtttgagcg
     8161 caacgacatc gacttccaac gggggcgttt ccgtgtacgt ggagatgtgg tggagatttt
     8221 cccagcttcc cgtgatgaac acgcctttcg tgtggagttt tttggtgatg aaatcgaccg
     8281 cattcgtgag attgaaagcc tgacagggaa ggttttgggc gatgtggatc acttggccat
     8341 tttccctgcc acccatttcg tgaccaacga tgatcacatg gaaacggcta ttgccaagat
     8401 tcaggcggaa ctggaagagc agctcaagat ctttgaggca gaaggaaaac tcttagaagc
     8461 tcagcgattg aaacaacgga ccgactacga catcgagatg cttcgggaaa tgggttacac
     8521 caacggagtt gagaactatt cacgacacat ggacgggcga agcgagggcg agcctccgta
     8581 cacactgctg gactttttcc ctgaagacta cctgattatg attgacgaga gccacatgac
     8641 catggggcag attaagggga tgtacaatgg tgaccgctca cgcaaggaga tgttggtcaa
     8701 ctatggcttc cgcctcccga gtgcactgga caatcgtccg ctgcgcaggg aagaatttga
     8761 gagccatgtc caccagattg tctatgtatc tgcgacgccg ggtgactatg aaatggagca
     8821 gaccgatacc gttgtcgagc agatcattcg gccgacaggg cttctggatc cagaagtgga
     8881 agtccgtcca accatgggcc aaatggatga cctcttgggc gaaatcaatg cccgtgttga
     8941 gaaaggtgag cggaccttta tcactaccct gaccaagaaa atggcagagg acttgactga
     9001 ctacctgaaa gaaatgggcg tcaaggtcaa gtatatgcac tcggatatca agaccttgga
     9061 gcgtacggag attattcgtg atttgcgttt gggtgtcttt gatgttctga tagggattaa
     9121 cctcttgcgt gaggggattg atgtgccaga agtcagtctg gttgcaatct tggacgctga
     9181 caaggaaggc ttcctccgaa atgagcgtgg actcatccag acaatcggtc gggcagctcg
     9241 taattctgaa ggtcatgtga ttatgtatgc ggacaaggtt accgagtcta tgcgcaaggc
     9301 tatggaggaa acagcccgcc gccgtcaaat ccagatggcc tataatgaag aacatggaat
     9361 cattccacag accattaaga aagaaatccg tgacctgata agcgtgacca aggctgtcac
     9421 tcaggacaag gaagaagtag tggacttcaa tgccctcaac aaagacgaac gcaaggctat
     9481 gatcaagaaa ctggaaggtc aaatgcagga agccgcagaa gtgcttgact ttgaactggc
     9541 agcccagatt cgtgatatgg tcattgagtt gaagaatatg tagtaagagt tactaggttc
     9601 cgtgatttaa gtagaatgaa attacaagag gcggcaggta gaaattgacc tgccaccttt
     9661 tataatactt aaaattttta cttggggact tagggacaaa aaatttgtcc ctgtccctat
     9721 aaaaggttat aatggtttct atactattta gggaataggg ggagttttta tgaaaaatat
     9781 tttggtgaaa aacgacagcg gttcggtttt cggaaactgt cgattggact tgtctcggca
     9841 gctgtagcaa gtttgttttt tgcgtcatcg gtcgcagcag caccgtcagc tagtgctcag
     9901 tctatcaatt attcctatgt gacagagcaa gaattgacag atgcagaaaa ggagttgatt
     9961 attcgtgact tgcctggctt agctcaggaa acggatgcaa attattacct gatctatcgt
    10021 ccagctactg gcacaacatc tactccatcg acgagcacgt ctcaagtttt gccaaatact
    10081 ggctctgtag aaaccggact attggtggcg ggtggagtgt ctcttctgtt attggctgtt
    10141 agatttggta aaaaaggtaa gaaggagttg gcaggtgtca tccttttgac agctacggga
    10201 gcaagcttct tcggtccaac tagctccgca ttgacgagtc aaattttggc tcgatataac
    10261 catgcaatcg aaatatctgc cggacaagcg ttaccggccc cagctgagat tgatggctac
    10321 gtttatgtag gatatttgaa ggatagcaaa gctattgaac aaactacttc ggaagaggaa
    10381 aaaacagcgg aattcccagc ttcagaagga atccgtacag aaactattgt caacaagaca
    10441 gaggccattc cattcgaaat tcaaaccgta gaaaatcctc aattatctgc ggggacagag
    10501 cgagtggtac aagaaggaca ggatggggag cgtattgtaa cgattaaaca agtccattca
    10561 aaaggtcaaa ttatttcgga agaagagatt tcctcgacgg ttacaaaaac tgctgttcca
    10621 aagattgttg aagttggtac aaaacaagca accgatgata ttgttacaga agtaccagat
    10681 acagaaccaa gttatgaaaa ctcgacgaat tctttaacag aagaaacagt tactcatacc
    10741 gaagtctttg cctttgatgt gcaagaaatc tatgatgtaa acttggcaga aggtagtcgt
    10801 gaagttgaac agaagggaca agatggtgtt cggacaatcg agactaggaa ttattatgcc
    10861 gatggtgtac tgattaaatc cgaacaagtt tcagatgtag tgacaaaaga accagtaaca
    10921 gaagttgtaa gagtaggcac gaagacaaca gatgttattg gttctgaaac cattgtaaca
    10981 acagaagagc ttccgtttga aacgacagtc acagaaacag aagaacttta tgttggggaa
    11041 gaaaaattca ttactgaagg taaggttggt tctaaggaag ttaccactac ttatcagaca
    11101 atcaacggag tcagtcaacc aaacccaaca gtgactgaga aagtccttga agagccaaca
    11161 acgaaagagg ttctcaaagg aacaaaacca atagaaggta cggaaatcga aactaatcaa
    11221 gttgaaattg cctttgaaac agagtatgtt gatgacccga cattgttaga aggtaagacc
    11281 aaagttgtaa cggcgggtgt aaatggctct aagacagtta caacaactta ccagactatc
    11341 aagggagttc gtcaggaaaa tcctactgta acagaagaaa tcacaaaaca acctgttaag
    11401 caagtcattg cgcgtggtac aaaagttgag aaagttccac aagtgattat cacagatttg
    11461 gtggaaaatg acgatgccaa gtcagcgaca atcagctaca agttgacaga cgaaaccgct
    11521 aatttccaac gagctgttgc tctcctctat gataatacag gtgccttggt tcaagaacag
    11581 accattacag atccaaatgg ccagttgaca cttgaaaatc ttgatttcta cacagattac
    11641 actgttaaga ctaagatttt ctacacaatg gcagagcagg aacaaagttc ggaacaagaa
    11701 gctattcttg aaagcatgcg caaatttgat ttggtctaca agaagattga aatcaaggat
    11761 attgatgcgg tgactgttta ccgtcgtaag aatggtagct acatcggtca agaattcttg
    11821 gaagaactgc cagcatccac agatgaattg tttatcaagg tgacttcaga tcgcttcaag
    11881 gaggtatacc tacctgtgtc aagtattgaa gaaactacct tgaatggcaa ggcagtcttc
    11941 aaactagttt catcctttga tgaattggta caggataagg atgcccaata cgttgccaat
    12001 cgtgaattct acattcctaa gatggcgact gatgcaaata cctacacatc cttcaaagct
    12061 ttgctcgacg ctatgaaggc aaatccaagt ggtaccttta aactaggagc gcatttggac
    12121 gcaagtgaag ttcctgttgg agatgttgca tcgtatgtga ccaactttag cggtaccttg
    12181 gatggcttaa atgacggcta cgacttttct atcagcaact tgaaagcacc attgttcttt
    12241 aaccttggtg gtaaagttca aaacttggac atcaaaaatg caagcctgaa tacaagctct
    12301 aagaacccac ttgcgacaat tgcgattaat gccaatggag caactattac aaacgtagca
    12361 gtagaagcat ctatcaaagg accgcaaaac gtatctggtt tagttcattc tgcaacaaat
    12421 actactatta aaggtgtatc cttcaagggt agtatcgaag taaccggaac caatgcaagt
    12481 ctaactggtg gtatcttggg taacggtacg atggcaagtg tcggaaatgc caaggttgat
    12541 gcgaccataa ccctcccagg tacagagaat caagtagctg gtggtatcgt cggtcgtaca
    12601 atgcttgtct acgatgtacc aggaagtgtc tataattctt atgcagctgg ttccattgtg
    12661 acgactgaat cggcagccat tgtcggcgga attgctggtg ccaaccaagt aacaggtgcc
    12721 tatgctccac atagcggtaa tgtcaacaac gttgtcagcg atatgactgg tacgaaaagc
    12781 attatcggtc aacccgcaaa tccaactggt aagattaaag acggtttcac tacaacatct
    12841 gatagcttga ccaacgtcac tgttatcact gatgaagaag cgcaagcaaa agtagaagct
    12901 atggctattc aagcgacaat tgatgattct gtaccgctta atctcaatca ttattcagta
    12961 gactacttga ccttggataa ggcacaggct gaccatgaaa ctgcctacta caacatggag
    13021 aaaatcttgc cattctacaa caaggaactt cttgtctatt atggaaacaa gattgcgaca
    13081 gacgataagc tcaacaaggt ccgtttgctg gatgttgtac caatgaagga caatgctgta
    13141 gttgctgacg tctacgctga gaaggctaat atcaataaga ttatgcttca ctatgctgat
    13201 ggcactgtgg actacaagac agtttcttat ctagaagact tcaagaataa tcatgtggtc
    13261 gagtatacca tttcaggtac ggacttgatt tacacgccag aatcattctt gaatgacaga
    13321 agtgcccttg tcaatgactt ggtaagcagc ctttcttctg ttgtcctcga ctcggatgcc
    13381 atgaaggctg ttatcaatta tccaacaaaa ttaaatgcgg atactcagac tggcacagct
    13441 aaagacttct actttggtga cagctataac caagtaatgg ctaacctaga aagcaacgtt
    13501 cgtaagattt tggttgctag tctaaatggt caaggtcagg cttctgaaga ctacatcaaa
    13561 gagaaaatca ccaataacaa agcagccttt gtgctcggtt tgacttactt gaaccgttgg
    13621 tatgacatca acttcggaga gatgaatacc aaagacttga ccatctttga acctgacttc
    13681 ttcggaaatg atgtagcatc tgcccttgat atgattcttg caattggtaa tggtggctat
    13741 gatgttcttc gtgcccacaa taacgtgacc acttttgcat ccatcattgg taaacaaaat
    13801 aatcagacca agcttttcga tatgctggaa gattatcgtc agctcttctt gccagaaatg
    13861 accaacaatg aatggttcaa gcaaacaacc aaggcatatg ttgttgaagg taagtccttg
    13921 attccagaag tagctgcaaa gcaggaaacg acagatactt atagcaagta caatgttgga
    13981 gcttatagca agattgtgaa tgatacggta tctaacccag cttggaagta caatcacatg
    14041 ctcttgccac ttttgacctt gccacaagag aatatcttta tcatcactaa catgaatacc
    14101 atcgcgattg gttcttatga acactacgta gatgattatt cgacagtgga aaatcgtgat
    14161 aaggttcgtc agatggttga tttggcggca gaacgtcagc gtgataatgc agacttctgg
    14221 tataagattt tggatgaaac caaccgtgac aagctattca gatctgtcct caataacgaa
    14281 ggttatgtga tgtatggtaa agatggtacg aagtcttatc gcaacttgac agctgatgtt
    14341 gatgctatcc aagatttcta cggtccgatc aacaagtggt atcgtgagca tccgtctatt
    14401 aagactgcct ttgcggatgg aagtgagacc tactatatca cttacgatat gttgacggat
    14461 tacggtacag ctctttatac ccacgaaatg gttcacaacc aagatggtga tatttatctg
    14521 aaaggctatg gccgccgtat tggtcaaggt atggaagttt acgcccaagg tcttctacaa
    14581 aatgtcttca atgttactga gatgaacctt ggattcaacg ctgtctataa tagcgatgat
    14641 gccaaccgtg tccatgtcgg agacccagtt gcacgtttca atagcgaagc tgatttcaat
    14701 gagtattacc ttaaccaatt tgatgtactt tacttgctgg attacctaga aggtacaagc
    14761 atcttggctc aatcagatgc taacaagaaa gcttggttgc gtaatattga aaactactat
    14821 gtccaaaata atggtgttga tacccaagct ggaaactctg tgcgtgcatt gacagatgcc
    14881 gaagtggcaa gcttgaagtc cttcaatgat ttgattgatc agagcattat tgttcaacgc
    14941 caatatgtca acaatccaac taacacaagc aagaagtggg atagaaacag ttatgtcagc
    15001 gttccaatgt ttgcagctaa cttctcagcc ctttcaaact caaacggttc tccaggcgac
    15061 atcatgttcc gccgtatggc ctttgaattg attgcagcta aaggctacac agatggtttt
    15121 gtgccgtatg cttccggaca attatccgac ctagccatgg aaaaaggttc taagatttac
    15181 gatacatgga ctaaaaaaga tgttggtttg attacagaca atcttgtctt agaatatgtc
    15241 ttccaaggtc aatatacttc atgggctgag ttcaagaaag ccatgtttac tgagcgtttg
    15301 gaaaaagcag cagcaggcca actcaagccg tttaccatgc agtatgaact tgatgttgct
    15361 gattcaacca aggaagtaac tatcacaagc tttgagcagt tggaaaactt gatgaaagag
    15421 gccatggaag cagacatcca agcaaatagt ttaaacttga acaacagtcg tgttcatgca
    15481 ctcaaagtga aagtttatca agccttgatg aactctacaa atgacttcag aacatcgatt
    15541 tttaacccat aatcataaac aagttggtct tgtgccaact tgttttttaa tgtatactag
    15601 aggaaaaaat tcggaggtcc tttagatgat gattaaacca ctggaaacga aaagtgaaat
    15661 actaggcaag gcctatgttc attggaaatc gtggcaggag gcctatgctg acctgttacc
    15721 tcaggaattt ttaaagaaaa cttacacctt agaaagctgt caagactggg cagttcggta
    15781 tcctaagaat atcttgatag ctgtgatgga tgataaggtg gttggctttg cctgttactg
    15841 ctcgtctagt caggaggatt tgcaaggggc aggggagctc tacgccctct atgtcttggc
    15901 ggattattat gatcagaaga taggctacca gctcatgcag gcagctttgg aaaaattgca
    15961 gagctacgaa accgttactc tctgggtatt ggaggggaat gcgcgtgctg ttgccttcta
    16021 tgaaaaagtg ggcttccgat ttgatggtgt caaaaaaacg gtcaatttag gcgcagaacg
    16081 tacagaatat agaatgattt ttaaacagaa agagagagaa aatggctaga aaagaaatgg
    16141 tcactttgac caacatgtgt ctaatcgaag ataaggaagg gaaggtcgtt gtacagattc
    16201 gagatcccaa gcgttatcgt tggtctggtg ttgcctttcc aggtggacat attgaagaag
    16261 gcgagaattt ccatgattcg gttgttcgtg aggtctttga ggagactggc ttgacgattg
    16321 caaatgcacg actagtcgga ataaagcatt ggccggataa ggaagggtat cgttacattg
    16381 tatttctcta taaggcaaca gagtttacag gaactatccg atcaactgaa gaaggcgagg
    16441 tgcgttgggt tgagaagtcg gatctgtctc agatggattt ggcctatgac ttactagaaa
    16501 tcctgaaagt catggatgag ccagatttgt ccgagttctt ttatactaga aaaaatgacg
    16561 atggagagtg ggacaagaat tttaggtaga agctaggaat agcttctttt ttatgtcatt
    16621 tgaataaaat a
//
LOCUS       DASGCC010000039        16226 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.039, whole genome shotgun sequence.
ACCESSION   DASGCC010000039 DASGCC010000000
VERSION     DASGCC010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16226
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.039"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            31..1398
                     /locus_tag="U1404_000858"
     CDS             31..1398
                     /locus_tag="U1404_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019768617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM5347828.1"
                     /translation="MAKIVVVGANHAGTAAIKTMLTNYGQENEIVVFDQNSNISFLGC
                     GMALWIGEQIGGPEGLFYSNKEELESLGATVYMESPVTNIDYDAKTVTALVNGQEHVE
                     SFEKLLFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIEKLKNKDI
                     NRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLSDIMAKNLEEHGIK
                     LAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTALAGEGIERFRNGAFLV
                     NKRQETSIPGVYAIGDCATIYDNATGDTSYIALASNAVRTGIVAAHNICGTDLEGIGV
                     QGSNGISIYGLNLVSTGLTLEKATRLGLNAAVTEVTDNQKPEFMEHGNFPVTIKIVYD
                     KDSRRILGAQMAAREDISLGIHLFSLAIQEGVTIEKLALTDLFFLPHFNKPYNYITVA
                     ALGAE"
     gene            1688..3967
                     /gene="pcrA"
                     /locus_tag="U1404_000859"
     CDS             1688..3967
                     /gene="pcrA"
                     /locus_tag="U1404_000859"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HEM5347829.1"
                     /translation="MNPLLNGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYL
                     IDEKMVNPWNILAITFTNKAAREMKERAYALNPATQDCLIATFHSMCVRILRRDADHI
                     GYNRNFTIVDPGEQRSLMKRILKNLNLDPKKWSERSILGTISNAKNDLIDDKAFEAQA
                     GDLYTQIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPEVLTYYQQKFQYIHVD
                     EYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPESKVVL
                     LEENYRSTKNVLQAANEVIENNRNRRPKKLWTQNAQGDLITYYRARDENDEAIFVAGQ
                     IDQLHREGKAYKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISY
                     LNIIANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPIKGK
                     AAQAVFDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQE
                     FLSVTKNFDEKDTEEEETGLDRLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLE
                     FPVVFLIGMEENVFPLSRAAEEEDELEEERRLAYVGITRAEQTLYLTNANSRLLFGRT
                     NYNQPSRFIREISSDLLDYQGLARPANTSFKASYVNGRATQFGQGMSLQQAMQSRKAS
                     VQPSAKLGGSMPFASSNQSSSSGTNWSVGDIAVHKKWGRGTVLEVSGSGSNQELKINF
                     PEMGLKKVLASLAPISKEE"
     gene            4409..5164
                     /locus_tag="U1404_000860"
     CDS             4409..5164
                     /locus_tag="U1404_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor 2"
                     /protein_id="HEM5347830.1"
                     /translation="MSKRKIISSLFLSATVLGGLLFIQTPTVKAIELEDAQTMSTSSA
                     QAPIFSPGELIQETNHTAQFRNSVSIAATNGTSEKEVIWKVDSTYWNFNYDKGGYYFV
                     VPAGMKLKRITLVNGQTREELLDRFPKNVNDNNGSNSSYRLFKRGENTYDDRDFDSQW
                     GWSAGRASNDKVNQWKDENVFSDIYYIDSPRHAGPVTYELEAEVTDQNKTSFPLVAVM
                     KNFYARTSYLSEPTSLAGLDVKVEWPQNNNLNS"
     gene            5580..6265
                     /locus_tag="U1404_000861"
                     /pseudo
     CDS             5580..6265
                     /locus_tag="U1404_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775054.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
     gene            6344..7108
                     /locus_tag="U1404_000862"
     CDS             6344..7108
                     /locus_tag="U1404_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5347831.1"
                     /translation="MKRLLRRIRPTKPLKELTWIDLIIITTILCGNAIYTSTMQWIAS
                     FSATETVETGVLSFSPADNWWALANQGKLFLFALVYLLIRNYDFKQLKVKLEWTVLLW
                     GPLIFIGAGLISDLTFTAFSYIPGLSGGYNYLGYLPYYDWNIMTVLNRFLAVDYSTVI
                     YSLFNGLYEEFFFLGLLLSTDKKKRSLVLLFSTIVRISFHTYQGMVSALVIGVAFGLF
                     YYYMYTRKNDNLLPYFLGHALADMVGTSFFTLFIAG"
     gene            7351..7602
                     /locus_tag="U1404_000863"
     CDS             7351..7602
                     /locus_tag="U1404_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HEM5347832.1"
                     /translation="MKQIKNRLKKHMFWIGLISLVLMLVDNVLVCYFNIECSRTLNQI
                     EQTICIILSILVFLGVLNNKPDVKVEDIMKNGMSSKNQK"
     gene            8134..8889
                     /locus_tag="U1404_000864"
     CDS             8134..8889
                     /locus_tag="U1404_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEM5347833.1"
                     /translation="MIMKRTILLCLPTILLLAACHQKPNQANTKKNSSTVVSTTSSQS
                     ASITSEQSTSSSTSVETDQEVTSTETQVNFNGSYYSVQGKYGEVIIANKKHPLAADYA
                     PGENPEALVAFQRLIADMQALGFGISNNYSGFRSYETQASLYQSYVNQEGQAAADRYS
                     ARAGYSEHQTGLAFDLLDTSGNLLEEPNASQWLATNAHLYGFIVRYLPGKESSTGYMA
                     ESWHVRYIGQEATDIYNSGLTLEEYFGVPGGDY"
     gene            8978..9421
                     /locus_tag="U1404_000865"
     CDS             8978..9421
                     /locus_tag="U1404_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5347834.1"
                     /translation="MLKAMEVYLVTNGNGLEAIEFYKNALGATVEQVNLFKDFLPDCP
                     AELENYVMNAQFRLNGQRFMLSDNNPEMPYTVGDNITVALITDDAETAQELYSKLSVD
                     ATAINMELQAVPWSPAYGNVTDKFGISWQINAEVEGYGQEYYAEN"
     gene            complement(9449..11059)
                     /locus_tag="U1404_000866"
     CDS             complement(9449..11059)
                     /locus_tag="U1404_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM5347835.1"
                     /translation="MSKSIIWELVKINILYSNPQLLASVKKKQSKRKDASFSAYKSVL
                     LQQVFMVLSFGLLYSVFFMGVDYSQSIGFFSLQLALFTIIAIVYGFTGFFSVFYDSKD
                     TKLYLALPLKPQEVFLAKILSAQGMVLPFLMPCLSLLLITYWQIGGPLLALASIPSFL
                     ILWILANLVNLIIMHFVGEVLTKSPRKTLISTILMTGSSLLAFAALMFLQSQQTVSLE
                     SGGFVDFPIIPIFAGFHYLVSHTISLETLLHFGLPFILMFGLITFAFKTVIPNYFNQV
                     LAIENASTKRTNNAKSAKIPSNLNQALVKHHLSTLKDSNLMVQTMIQPIIMGVALFPS
                     FSRFTENGGLSSVEWDFFGIALLAGFLLGSLFAGSTTFIGVAMSLEKENYHFIRTLPI
                     SFKKFIIQKFWVLAAVQFALPTLLYFALALGFMKVKLILAVFFTVGIIISALLTGQIY
                     YWRDQRLLMLNWQNSNQLFGRGAGQWLIAGLIIGTMFLGAIILVVSIILAGTIGAAYV
                     SSALMTLLFVLSAALQLYIYKAYWQKLK"
     gene            complement(11056..11799)
                     /locus_tag="U1404_000867"
     CDS             complement(11056..11799)
                     /locus_tag="U1404_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347836.1"
                     /translation="MIQFDHITKTYGETIALDDLNLTIESGEIFGLIGHNGAGKTTTI
                     SLLTSIIEASYGTISVDGLNLEENRDEVKKRIAYVPDSPDIFLHLTAFEYWHFMGKVY
                     GVEKNTVDDRIAKLSSLFDMTARQHEPIDSFSHGMRQKTIIIGALIPNPDIWILDEPL
                     TGLDPQASFDLKQMMKEHAQSGHTVLFSTHVLSVAEQLCDRIAILRKGQLIFVGSLDE
                     LKSQYPDKDLETIYLELAGRQQVKAGEEV"
     gene            12039..13823
                     /gene="uvrC"
                     /locus_tag="U1404_000868"
     CDS             12039..13823
                     /gene="uvrC"
                     /locus_tag="U1404_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEM5347837.1"
                     /translation="MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSY
                     FRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFI
                     KITKERHPRLLITRQIKKDSGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
                     YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKA
                     AEYRDVLQSISTLRTKQRVMAHDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNL
                     FPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEALVDTKVIKPQRGEKK
                     QLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGT
                     SPVSAMVVFENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLI
                     IIDGGQGQVNVAKQVIEQELGMSIPIAGLQKNDKHQTHELLFGNPLEVVELPRNSQEF
                     FLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSA
                     SLQEIAEAGVPYKVAELVKENLSSKDEI"
     gene            13880..14008
                     /locus_tag="U1404_000869"
     CDS             13880..14008
                     /locus_tag="U1404_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4044 domain-containing protein"
                     /protein_id="HEM5347838.1"
                     /translation="MAFGEEKHKKTTFEKVTLVIVVVMVVATLAGLILPAINALMN"
     gene            14302..15615
                     /gene="obgE"
                     /locus_tag="U1404_000870"
     CDS             14302..15615
                     /gene="obgE"
                     /locus_tag="U1404_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEM5347839.1"
                     /translation="MSMFLDTAKIKVKAGKGGDGMVAFRREKYVPNGGPWGGDGGYGG
                     NVVFVVDEGLRTLMDFRYNGRFKADDGEKGMTKGMHGRGAEDLIVRVPQGTTVRDADT
                     GKIITDLVENGQEFVIAHGGRGGRGNIRFATPKNPAPEISENGEPGEERNLELELKVL
                     ADVGLVGFPSVGKSTLLSVITAAKPKIGAYHFTTIVPNLGMVRTKSGESFAVADLPGL
                     IEGASQGVGLGTQFLRHIERTRVILHVLDMSASEGRDPYEDYVAINNELETYNLRLME
                     RPQIIVANKMDMPEAAENLEEFKKKLAANYDEFEELPQIFPISGIAHQGLKNLLEATA
                     ELLEKTPEFLLYEESDFQEEEAYYGFNPDEPEFDISRADDASWVLSGDKLEKLFTMTN
                     FDRDESVMKFARQLRGMGVDEALRARGAKDGDIVRIGKFEFEFVD"
     gene            15989..16153
                     /locus_tag="U1404_000871"
     CDS             15989..16153
                     /locus_tag="U1404_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347840.1"
                     /translation="MGDKPISFKDKDGNFVSAADVWNAEKLEELFNKLNPNRKLRLER
                     ERLAREQEKE"
BASE COUNT         4957 a         3063 c         3602 g         4604 t
ORIGIN      
        1 aatatatttt cgaaagtgag attttacatt atggctaaaa tcgttgttgt cggtgctaac
       61 catgctggta ctgccgcaat caaaactatg ttgacaaatt atggtcaaga aaatgaaatc
      121 gttgtatttg accaaaactc aaatatttca ttcttgggtt gtggtatggc tttgtggatc
      181 ggtgagcaaa ttggcggtcc tgaaggactt ttctactcaa acaaagaaga gttggagagc
      241 ttgggtgcga cagtatacat ggagtcacct gttacaaaca ttgactatga tgccaaaaca
      301 gttacagcgc ttgtaaatgg tcaagaacat gttgaatcat ttgaaaaact tcttttcgca
      361 actggttcac aacctatctt acccccaatc aaaggagctg aaatcaaaga aggttcgctt
      421 gaatttgaag caactcttga aaacttgcaa tttgttaaat tgtaccaaaa ctcagcagat
      481 gttattgaaa aattgaaaaa caaagacatc aaccgcgtcg cagttgttgg tgctggttac
      541 atcggtgttg agcttgcgga agcattccaa cgtaaaggta aagaagtagt acttattgat
      601 gttgtggata catgtttggc tgggtactat gaccgtgact tgtcagatat tatggctaaa
      661 aacttggaag agcatggtat caaacttgcc ttcggcgaaa ctgttaaaga agttgctggt
      721 aatggtaaag ttgagaaaat catcactgac aagaacgaat acgatgttga catggttatc
      781 ttggctgttg gtttccgtcc aaacactgcg cttgcaggtg aaggaatcga gcgcttccgt
      841 aacggtgcct tccttgtaaa caaacgccaa gaaacttcaa tcccaggcgt ttacgctatc
      901 ggtgactgtg caacaatcta cgacaacgct actggcgaca caagctacat cgctttggct
      961 tcaaacgcag tacgtactgg tatcgtagca gctcacaaca tctgtggcac tgaccttgaa
     1021 ggtatcggtg tacaaggttc taacggtatc tctatctacg gtcttaacct tgtatcaaca
     1081 ggtttgacac ttgaaaaagc tactcgtctt ggtttgaacg ctgctgttac tgaagtaaca
     1141 gacaaccaaa aaccagaatt catggagcac ggtaacttcc cagtaactat caagattgtt
     1201 tacgataaag attcacgtcg tatccttggt gcgcaaatgg ctgctcgtga agatatctca
     1261 ttgggtatcc acctcttctc attggcaatc caagaaggtg taacaatcga aaaattggcc
     1321 ttgacagact tgttcttctt gccacacttc aacaaacctt acaactacat cacagtagct
     1381 gccttgggtg ctgaataatc aattgaatac aaaagctcag agatgactct gggctttttt
     1441 ggctgttctc catcattttg cacctgccta tcgagagaat ttttggtata atggagggta
     1501 tgattataat gaacctgtat ttacagttta gcactttcat ctaagcctag tttttcagct
     1561 atttatcgtt tgtttttcca aaaatacagt cggtatttcc tcaaaaaatt accttgatta
     1621 gctataaacg atttcctatt tgaaagtgaa ttacttgtaa atacatgttc taagaaagta
     1681 tgagaaaatg aacccattat taaacggaat gaatgacaga caggcagaag cggtacagac
     1741 gacggaaggt ccgctattga ttatggcagg tgctggttca ggtaagacgc gagtcttaac
     1801 ccaccgcatc gcctacttaa ttgatgagaa aatggtcaat ccctggaata ttttagctat
     1861 cacctttaca aacaaagcgg cgcgtgagat gaaggagcgg gcctacgccc tcaatcctgc
     1921 tacgcaagac tgtttgattg ctaccttcca ctccatgtgt gtgcggattt tgcgtcgtga
     1981 tgctgaccat attggttata atcgcaattt tacgattgtc gatccaggtg agcaacgcag
     2041 tctcatgaaa cggattttga aaaatcttaa tttagatccg aaaaagtgga gtgaacgttc
     2101 tatcctggga accatttcta atgccaaaaa cgacttgatt gatgacaagg cgtttgaagc
     2161 ccaggcaggc gacctataca cgcagattgt tgctaaatgc tacacggctt accaaaagga
     2221 actaagacag tcagaagccg ttgactttga tgatttgatc atgttgacgc tccgcctttt
     2281 tgaccaaaat ccagaggtcc tgacctatta ccagcagaaa ttccagtata tccatgtaga
     2341 tgagtatcag gataccaacc atgcccagta ccaattggtc aagctcctgg catcgcgttt
     2401 caagaatatc tgtgtggtcg gggatgcgga ccagtcgatc tatggttggc gtggtgcgga
     2461 tatgcaaaat atcctggact ttgaaaagga ctatccagaa agcaaggttg tgcttttgga
     2521 ggaaaactat cgttcgacca agaacgtctt gcaggctgcc aatgaggtca tcgaaaacaa
     2581 ccgcaatcga cgtcccaaaa aactctggac acagaatgcc caaggggatt tgattaccta
     2641 ctatcgtgcc agagatgaga atgacgaggc gatttttgtc gcagggcaga ttgaccagtt
     2701 gcacagagaa ggcaaggctt ataaggattt tgctgtactc tatcggacca atgcccaatc
     2761 ccgtaccatt gaagaagccc tgctcaaatc taatatccct tataccatgg ttggaggcac
     2821 caagttctac agccgtaagg aaatccggga tgtgatttct tatttgaata tcatcgcaaa
     2881 tccatcggat aatatctcct atgaacgcat tgtcaatgag ccaaaacgtg gcgttggacc
     2941 tggcacggtt gacaaactcc gtgattttgc gaccagccac agcatgtcct tgctagaagc
     3001 ttcacaggat attatgttat cgccgattaa agggaaggca gcgcaggcag tctttgacct
     3061 agccaatctc ctctataatc ttcgtaatca attagacaac ttgacggtta cccaagtagt
     3121 cgaggcagta ttgaatcaaa caggctacat tgatgccctt gcagcacaaa atacgctgga
     3181 agccaatgct cgcatagaaa acattcaaga attcctgtct gttaccaaaa actttgacga
     3241 aaaggatact gaggaagaag agacaggtct ggatcgcttg acacgattcc tgcttgattt
     3301 ggcactgatt gctgacacag atgatggcga tacagaatct tcagaagtga ctcttatgac
     3361 cctccacgca gccaaagggc tggaatttcc tgttgtcttc ttgattggta tggaggaaaa
     3421 tgtcttccca cttagtcgtg cagcagaaga agaggacgaa ttggaagaag aacgtcgttt
     3481 ggcttacgta ggaatcaccc gtgctgagca gactctttac ctgaccaatg ccaactcccg
     3541 cctgctcttt ggtcgcacca actacaacca accaagccgc tttatccgag aaatatccag
     3601 tgacttgctt gattatcaag gtcttgctcg tccagccaat actagcttta aggcctctta
     3661 tgtcaatggc agagcgacac agtttggaca aggtatgagc ttacaacaag ccatgcaaag
     3721 tcgaaaagca tccgtacaac catcggctaa gctcggaggc agtatgcctt tcgcatcgag
     3781 caaccaatcg tcaagctcag gcaccaactg gtcagttggt gacatcgcag tccacaagaa
     3841 atggggacgc gggacagtcc ttgaagtatc aggttcaggc agcaaccaag aactcaaaat
     3901 caatttccca gagatgggac ttaagaaggt cctggcaagt ctggcaccga ttagtaagga
     3961 agagtaggga tgaatcaaaa gtaaagagga aacatcgcat tttacaagac ttgcgacgtc
     4021 ttcataatat tatttttaga acgatatatg acacctcaaa atgagtcttg acctgactgt
     4081 tttgaggtga ttttttgtat actgcttaaa gcatcgaaac aatcttgcac gctttgatga
     4141 catctagata agcaaatttt gaattttgaa tcggacgttt ttagagtgtg tcttaccatc
     4201 tatatgctaa accacaaata tagaaaaaaa cggatagctc caagagaaaa tactacttgt
     4261 attgttatac tgatagtagt taaaagtctt ttatttgcta gagactctca tcttagtaag
     4321 gaagggatag cctagaaatg ggacgattag cttgccaata tttttgtagc tagcgcaaaa
     4381 atagatcaaa taaaagaagg agactcttat gagtaaacgt aaaattatat caagtttatt
     4441 tttaagtgct accgtattgg gaggattgct gtttatacag acaccaaccg taaaagcaat
     4501 tgagttagag gatgcacaaa ccatgagtac tagcagcgca caagcaccga ttttttctcc
     4561 tggggaactt attcaagaga ctaatcatac tgctcagttt agaaattctg tatctattgc
     4621 tgcaactaat ggaacatctg aaaaagaagt aatctggaag gttgattcga cttattggaa
     4681 ctttaattat gataaaggtg gatactattt tgttgttcct gcaggtatga aattgaagcg
     4741 aattactctg gttaatggtc aaacgagaga ggaattgctt gatcgttttc ctaaaaatgt
     4801 aaatgataat aatggttcta atagttctta tcgtttattt aagagagggg aaaataccta
     4861 cgatgatcgt gacttcgata gtcagtgggg atggtcagct ggacgagcaa gtaatgataa
     4921 ggtaaatcag tggaaagatg aaaatgtatt ttctgacatc tattatatcg atagtcctcg
     4981 ccatgcaggt ccagtaactt atgaattgga ggcagaagta actgatcaaa ataaaacttc
     5041 cttccctctg gtagcggtaa tgaaaaactt ctatgctaga acatcatact tgagtgaacc
     5101 aacttcgctt gcaggacttg atgtgaaagt tgaatggccc caaaataata acttaaattc
     5161 gtagaactaa accaaccagt ggcaatcgtg tgtagttaag gctactacga ttgccttttt
     5221 ctgcgagtcc tcttctctct acttgaataa accagcgctt gaatattatg atgaggaaat
     5281 gggagcatcc agggctgcag atactcaata aaaatcaaaa gtagcctagg aaacgaagcc
     5341 ggtgatagaa ctctgttgct ttcttatttc aaggcaacag gctaaaaagc tccacaggag
     5401 cttttcactc atcgaggcaa gttgacaacg gatcattttg atttttaaag agtatgaaat
     5461 ctgaaaaaca gtataataga gcctaggaca cggagctatt tttttagaaa ctgtggtata
     5521 ctttagatat actgcctgac atcgtttcag tagtttctgc ttagaaagga cctatcatct
     5581 tgcaatacaa acacttactc tttgatcttg accatactct tcttgatttt agccgtggag
     5641 aagaagtagc cttaacccag tttttgacag ctatggaggt tgaagatatt caagctttta
     5701 aagaagtcta tcgaccgctc aatcagggca tgtggaagga tttggaaaaa gggaacatta
     5761 caaaaagaaa gagctaataa acacccgctt ttcacggacc tttgcccact ttggtcggca
     5821 agttgatgga agggagatgg ccttgcgcta ccaagaattt attgggcggc agggacaaat
     5881 ttttacaggt gcagataagc ttttgcagga attgacacac cgaggctacc agatttatgc
     5941 agcgaccaac ggcgtgacct atatacagaa aaatcgcttg cttcactcac cgattcaatc
     6001 gtattttaaa gaagtattta tttctgagca gatggggacg caaaagcctg cgactgattt
     6061 ttatgaaaaa atagcagagc agattgcagg ttttcaattt gaccaagcct taatgattgg
     6121 agacagtttg acagcagata ttcaaggcgg aaataatgct ggtatggata ctgtttggta
     6181 taatccgact cacatgataa ataatagtaa ggcagttcca acctatacca ttcatagcta
     6241 tcaagaatta ttagatttgt tataagatat tttaagaaac ttataaggat tttagtatat
     6301 aattatacag aaagaatata tacaaaaata taaggaggaa aaagtgaaaa gattactgag
     6361 acgcattcgt ccaacaaagc ccctaaaaga actcacttgg atagatttga ttattatcac
     6421 aacgatttta tgtggtaatg ctatttatac ctcaaccatg caatggatag catcattttc
     6481 cgcaacagaa accgttgaaa caggagttct gtcgtttagt ccagccgata attggtgggc
     6541 tctagccaat caaggaaaat tattcctgtt tgccctggtg tatttattga ttcggaatta
     6601 tgatttcaag cagctaaaag taaaattaga atggaccgtt ctactctggg gaccactgat
     6661 tttcattggt gcgggcctga ttagcgattt gacatttaca gctttttcat atattcctgg
     6721 tctatctggt ggatataatt accttggata cttgccttat tatgactgga atatcatgac
     6781 agtgctcaac cgtttcctag ccgttgacta cagcacagtt atctattcct tgtttaatgg
     6841 cctctatgaa gagttctttt tcttaggctt attgttgagt acagataaga aaaagcgttc
     6901 gctggtctta ctcttttcaa caattgtccg tatatctttc catacctatc aaggaatggt
     6961 atctgctctt gttattggtg tagccttcgg ccttttctat tactacatgt acacaaggaa
     7021 aaatgataat ttattaccat atttcttagg acatgctctt gcggatatgg ttggtacaag
     7081 tttcttcaca ttgtttattg cagggtaaac aatgtgaaga acggacatca agctaatcgg
     7141 ataaaatttc tttctcccta cagctgacaa acggatgatg atatgtagtt tctatcaact
     7201 cggtatcatc acccgtttta ttgtgctgat atatttaatc tcttcagtca aatttcgatt
     7261 gctttatcat attttttatc ccatattttt ttgaattaat ggtttattta tgttaaaatg
     7321 tatttttata catcaaaaag gagtatagat atgaaacaaa taaagaatcg tttgaaaaaa
     7381 catatgtttt ggattggact aatttcgttg gtattgatgc tcgttgataa tgtcctggtt
     7441 tgttatttca atattgaatg tagtcgtact ttaaaccaaa tcgagcagac tatttgtatt
     7501 atccttagta ttcttgtatt tttaggagtg ctaaataata aaccggatgt gaaggtagaa
     7561 gacatcatga aaaacggtat gtcatctaaa aatcaaaaat aatgtttggt agagactatt
     7621 ggggctgggc agaaagccca gcacctcttc tcagagttcg tgtcaacatc tcagcgcagt
     7681 ggttgattgg gtttaacagt ccagtggact gttaaagatt ggagataaga tttgcgaagc
     7741 aaatctcagc aattcgtgtt ttacactcca aatctgacca ttacgactga tgcgaacaga
     7801 gttcgcttcg tttccaacct ccaacagtca ctactctgac tgttggagct atgcgggggg
     7861 tgggagtgaa acagtctggg aatagactgt ttcagctcaa caactagaaa taaagacttg
     7921 ttgacgaact ctttttattt tggtcgagtt ctttcccact cccgtttcta tttatggcat
     7981 gtatgttatc gtgaatacca ctacttgaag gaaaagaatc gagagaaatt caatgaacac
     8041 taaaaatatc aatagtagtt aaaatcataa gccgtcatta gactgagttt tatgattgtg
     8101 ctacaataga cataattata agagaacggg gtgatgataa tgaaacgtac tattctatta
     8161 tgcttgccga caatactgtt actagcagca tgtcatcaaa agccgaatca ggccaatact
     8221 aaaaaaaatt cgtcaacagt tgtttcgact acttcaagtc agtctgcttc aataacttcg
     8281 gagcagtcaa caagcagctc tacatcggtg gaaacggatc aggaagtaac aagtacagag
     8341 actcaggtaa attttaatgg ttcctattat agtgtacaag gaaaatatgg cgaagtgatt
     8401 atcgcaaata aaaagcatcc gcttgcagct gattatgcac cgggcgaaaa tcctgaagcc
     8461 ttagtagctt ttcaacgatt aatagcagat atgcaggcgc taggatttgg tatctccaat
     8521 aactacagtg gatttcgttc ctatgaaact caggcaagtc tctaccagtc ttatgtaaat
     8581 caggaaggac aggcagcggc agataggtat tctgcaagag ctggatatag tgaacatcag
     8641 acaggattag cctttgattt attggataca agtggtaatt tattagaaga gcccaatgct
     8701 tctcagtggt tggctacgaa tgcacatcta tatggcttta ttgtccgcta tcttccagga
     8761 aaagagtcta gcacaggcta tatggcagaa tcctggcatg tgcgatatat tggtcaagaa
     8821 gcgacagata tttacaattc aggcttgacc ttggaagaat attttggtgt accaggtgga
     8881 gattactaat tttacattta gtcagaaata agtcgaaaaa tttgtccgta taactaactc
     8941 gtgatataat aaaccatcat aattttggag atccatcatg cttaaagcaa tggaagtata
     9001 cttggttact aatggtaatg gtttggaagc catcgagttt tataaaaatg ctcttggagc
     9061 aacagtggag caagtaaatc tatttaaaga tttcttgcca gactgccctg ctgaactaga
     9121 aaattacgtg atgaatgcac agtttcgttt gaatggtcaa cggtttatgt tgtcagacaa
     9181 caacccagaa atgccttata cagtaggtga caatattaca gttgcgctta tcacagacga
     9241 tgctgagaca gcgcaggaac tatacagcaa gttatccgta gatgcaactg ctatcaatat
     9301 ggaacttcaa gcagttcctt ggtctcctgc ctatggtaat gtaacagaca agtttggtat
     9361 ctcttggcaa atcaatgctg aagtagaagg ctacggtcag gaatattacg cagaaaacta
     9421 aaatagattg gacaaggcct tgtccaatct attttagttt ttgccaataa gctttgtaga
     9481 tataaagttg aagagcagca gatagaacaa atagtaaggt catcaaggct gagcttacat
     9541 aagctgcacc aatagtgcca gctaatatga tgctgacaac tagaataatg gctccgagaa
     9601 acattgttcc tatgatcaat ccagcaatta accattgacc cgctccgcga ccaaataact
     9661 ggttactatt ttgccagttg agcatgagga gtcgttggtc acgccagtaa taaatctgcc
     9721 cagttagcag ggctgaaatg atgatgccga ctgtaaagaa gactgctaga atgagtttga
     9781 ctttcatgaa acctagagcc aaagcaaagt aaagtagagt tggtagtgca aattgcacgg
     9841 cagccaatac ccagaatttt tggatgataa attttttgaa actaatagga agcgttcgaa
     9901 tgaaatgata attttccttt tccaatgaca tggctactcc gatgaaggtt gtagaaccag
     9961 caaatagact gccaagcaag aatccagcta atagagcaat accaaagaaa tcccattcaa
    10021 ctgaacttag accaccattc tccgtgaaac ggctaaaact tggaaaaagt gccaccccca
    10081 tgatgatagg ctgtatcatg gtttggacca tgaggttgct atctttaaga gtagataggt
    10141 ggtgtttcac taaagcctga ttgagattgc taggaatctt ggcagactta gcattattgg
    10201 tccgttttgt cgaagcattt tcaatcgcca aaacttgatt aaagtagttg ggaatgacag
    10261 ttttaaacgc aaacgtaata agtccaaaca tcaaaatgaa aggaagtcca aaatgaagga
    10321 gtgtttctag tgatatagta tggctgacca agtaatggaa tccagcaaat ataggtatga
    10381 taggaaaatc aacaaagcca ccggattcga gtgaaacggt ctgctgggat tgcaggaaca
    10441 tgagcgcagc aaaagccagc aaggaagaac ctgtcatcag gattgtagaa atcaatgttt
    10501 tacgagggct ttttgtcaga acttccccaa caaagtgcat gataatcaga ttgactaaat
    10561 tagctaaaat ccagagaatc aaaaaggaag gaatggaagc taaggcgagg agcggaccgc
    10621 caatttgcca gtaagtgatc agaagtaaag acagacacgg catgaggaag gggaggacca
    10681 tcccttgtgc agagaggatt ttagcgagga agacttcttg tggcttcagg ggaagtgcta
    10741 aatacaactt tgtatcctta ctatcgtaga aaacggagaa gaaacctgta aaaccgtaga
    10801 caatggcaat aatggtaaag agcgctagtt gcagagaaaa gaaaccaatg gactgactat
    10861 aatctactcc catgaaaaag acagaataga gaagtccgaa actcaaaacc ataaatactt
    10921 gttgcaagag gacactttta taggctgaaa aggaggcgtc tttgcgctta ctttgtttct
    10981 tcttgacgga agctagaagt tgaggattgg aataaagaat attaatcttt actagttccc
    11041 aaatgatgga tttactcata cttcctcacc tgccttcact tgttggcgtc cagctaattc
    11101 caaatagatg gtttccaaat ctttatcagg atactgtgat ttgagttcat caagacttcc
    11161 tacgaaaatg agttgccctt ttcggagaat agcaatgcgg tcacagagtt gttcagctac
    11221 tgaaaggacg tgtgtagaaa atagaacggt gtgaccagat tgagcatgtt ctttcatcat
    11281 ttgttttagg tcgaaagaag cctgaggatc cagtccagtt aggggttcat ccaaaatcca
    11341 aatatcaggg ttagggatca atgcaccaat aataatggtt ttctgacgca taccgtgtga
    11401 aaaactatca ataggctcat gctggcgcgc tgtcatatca aatagactag atagtttagc
    11461 gatacggtca tcaactgtat tcttttctac accatagacc ttgcccataa agtgccagta
    11521 ttcaaatgct gttaagtgta ggaagatgtc tggcgaatct ggaacatagg ctatccgttt
    11581 tttgacttca tcgcggttct cctctaggtt taaaccatca acagagatag ttccataact
    11641 ggcttcgatt atcgaagtca gtagactgat tgtcgttgtt tttcctgccc cattgtgacc
    11701 aattaaaccg aaaatctcgc cgctttcaat tgtcaaattt aggtcatcaa gtgcgattgt
    11761 ttcgccgtat gtttttgtga tatggtcaaa ttgtatcata ataacctcct tgttattcgt
    11821 gaactaaaag taggggcttg taggtattcc aagccttatt ccaaatgttc ttcgaataat
    11881 atatacaatt aattacattt attatactgc tgaattagta caaaagcaat agtttctatc
    11941 aatatttttg tagtatggat gcggatatat tgcaagaagt cgagtgtaaa aaggaatgca
    12001 ataagctcga ttatcagaaa atttgctata atagacctat gaacgatttg ataaagcata
    12061 agttggagtt gctgccggac agtccgggtt gctacctcca taaaaacaag tacggtaaga
    12121 ttatctatgt gggcaaggcc aaaaacctgc gcaatcgggt gcggtcttat tttcgtggtg
    12181 cccatgatac caagacagag gccttagtat ctgaaattgc cgactttgaa ttcatcgtaa
    12241 cggattctaa tatcgaggcg ctcttgttgg aaatcaatct gattcaggaa aacaagcctc
    12301 gctataacat catgctcaag gatgacaagt cctatccctt tatcaagatt accaaggaac
    12361 gtcatccacg gctgctcatt acacggcaaa ttaagaagga tagcggtcag tattttggtc
    12421 cctatccaga tgtgggtgcg gccaaccaga ccctcaaact attggagcgc ctctatcctt
    12481 tccgcaagtg taaattgcct gagaacaagt attgtcttta ttatcatttg gggcaatgtt
    12541 tggctcacgg ggaaaacctg cccagcctgt ctgactatga taagatggcc aaggaagtgg
    12601 cccagttctt gacgggtcat gatgataaga ttgtcaagga agtgcaggac aagatgaagg
    12661 cggctgctgg caatttggaa tttgaaaagg ctgcggaata tcgtgatgtc cttcaatcca
    12721 tttcaaccct acggaccaag caacgagtga tggctcatga cttgcaaaac cgcgatgtct
    12781 ttggttatta tgtagacaag ggctggatgt gtgtgcaggt tttctttgtt cggcagggga
    12841 aactgattga gcggaatgtc aatctttttc catattataa tgatgcggac gaagactttt
    12901 tgacctacat cggtcagttt tacagggacc agcaacattt gattccctct gaggtcttga
    12961 taccgcagga tattgaccaa gaagccgtag aagctctggt agataccaag gtcatcaagc
    13021 ctcagcgtgg cgagaagaag caactcatca atctggcaac caagaatgcg cgtgttagtc
    13081 tggagcagaa gtttaatctc ctggagaaaa atctggagaa gacttacggt gcagtggaga
    13141 atatcggtca gttgctgggg attccgacgc ctgtgcggat tgaggccttt gacaactcca
    13201 acatcatggg caccagccct gtgtcggcta tggtggtctt tgaaaatggg gtgcctaata
    13261 aaaaagaata ccgcaagtac aagattaaga cggttgaggg gccagatgat tatgcctcta
    13321 tgcgtgaagt gctgcaacgc cgttatagtc gggtcttgag ggacgatttg acaccgcctg
    13381 atttgattat cattgacgga ggtcaggggc aggtcaatgt cgccaagcag gtcatcgagc
    13441 aggagttggg tatgtccatt cccattgcag gtttgcagaa gaatgacaag caccaaaccc
    13501 acgaattgct ctttggcaat ccgctggaag tggtggagtt gccacgtaat tctcaggaat
    13561 ttttcctcct gcatcggatt caagatgagg ttcaccgctt tgctattgaa tttcatcgtc
    13621 aggttcggtc aaaaaattcc ttctcatcta aattggacgg catagaaggt ttgggaccaa
    13681 aacgcaaaca ggctttgatg aagcatttca agtctattgg caatatccag tcggccagtc
    13741 tacaagaaat cgcagaagca ggtgtgccgt ataaggtggc ggagttggtc aaggaaaacc
    13801 tttcttcaaa ggatgagatt tgaaaacatt cccataatgt gttagaataa actatcaatg
    13861 actaaataag gagaaagcaa tggcttttgg tgaagaaaaa cacaaaaaaa caacatttga
    13921 gaaagtgact ttagtaatcg ttgtcgtgat ggttgtcgcg acattggctg gcttgatttt
    13981 accagctatt aatgcattga tgaattaaga acttgtattt acagttcggc acttttatct
    14041 aaggttggtt tttaagctgg cttgatttta ccagctatta atgcattgat gaattaagaa
    14101 cttgtattta cagttcggca cttttatcta aggttggttt ttaagctgtt catcgttagt
    14161 tttttcaaaa tacagtcagt attctctcaa agaacgacct tgattagcta aaaaacttct
    14221 cttatatata agcacttcgc ttgtgaatag aggtctaaaa cgcttttaag cgtttttttc
    14281 taggaaagaa tagggtaaat tatgagtatg tttttagata ccgccaagat taaggtcaag
    14341 gcaggtaagg gaggcgatgg gatggttgcc ttccgtcgtg aaaagtatgt accaaacggc
    14401 ggtccttggg gcggtgatgg tggttatggt ggaaatgttg tcttcgttgt agatgaaggc
    14461 ttgcggacct tgatggactt ccgttacaat ggtcgcttta aggctgatga tggtgaaaaa
    14521 gggatgacca aaggtatgca cggtcgagga gcggaagatt taattgttcg tgtaccgcag
    14581 ggaacaactg tgcgtgatgc tgatacgggt aaaattatta cagacttggt tgaaaatggt
    14641 caagaatttg tcattgctca cggtggtcgt ggtggtcgtg gaaatattcg ttttgcgaca
    14701 cctaagaatc cagcgcctga gatttctgaa aatggagaac caggtgagga gcgcaatctt
    14761 gaattagaat tgaaagtgtt ggctgatgta ggtcttgtag gtttcccatc agttggtaag
    14821 tcaacgcttc tcagtgttat tacagcagct aaacctaaaa ttggtgccta ccattttaca
    14881 accattgtgc caaatttggg aatggttcgg accaaatctg gcgagtcatt tgctgtggca
    14941 gacttaccag gtttgattga gggtgctagt caaggtgttg gattgggaac gcaattcctt
    15001 cgtcacattg agcggacacg tgttatcttg catgttttgg acatgtcagc aagtgagggt
    15061 cgtgatcctt atgaagatta cgtagccatc aacaatgaat tggaaaccta caatcttcgt
    15121 ctcatggagc gtcctcagat tatcgttgcc aacaaaatgg atatgccaga agcggcagaa
    15181 aatctggaag agttcaagaa aaaattggca gccaactatg atgagtttga agaattgcca
    15241 cagattttcc caatttctgg tattgctcac caaggtttga aaaatctttt ggaagccaca
    15301 gctgagttgc tagagaaaac gcctgaattc ttgctctacg aggaatcaga tttccaagaa
    15361 gaagaggctt actatggctt taacccagat gagccagaat ttgacatcag ccgtgcagat
    15421 gacgcaagct gggttctatc tggtgacaaa ctagaaaaac tcttcaccat gaccaacttc
    15481 gatcgcgacg aatctgtcat gaaatttgct cgtcagttac gtggaatggg tgtcgatgaa
    15541 gccctccgtg cgcgtggtgc caaagacggc gacatcgtcc gtattggcaa gttcgaattt
    15601 gagtttgtgg attaacgtag cagtttgact gcaagttaac ttgctagtca aactacgcca
    15661 aatcctatgg gaccttggct agctacctta ctaacttcac ccaaatggta gtatcgacca
    15721 tttgggctcc gtgtcgtaac gttggaaaca cacttaaatc ctaaaggact tgatgtgata
    15781 cggtagccgc tatggcggac tacctaccaa ccttactaat tccgcacagg cagtggtatc
    15841 gactgcctgt actccatatc gtaacctgtc cggtaagtta gtctagtatg aacttagaaa
    15901 ttcgagagca gactatagct ttacaaattt cgttcagttg gtgacagtcg tttgtgagca
    15961 atcgaaaaaa aaatagttgg aggtctgtat gggtgataag ccaatatcct tcaaggataa
    16021 agatggaaat tttgtttcag cagccgatgt ttggaatgct gaaaaattag aagaactctt
    16081 taacaagctt aatcccaatc gcaaactccg tttggaacgt gagcgtttgg caagagagca
    16141 agaaaaggaa taacgtcaaa atctgcttgt tgtatcagaa aacaggcaga tttttttaaa
    16201 atttattgac tatttattat tggcta
//
LOCUS       DASGCC010000040        16089 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.040, whole genome shotgun sequence.
ACCESSION   DASGCC010000040 DASGCC010000000
VERSION     DASGCC010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16089
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.040"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            152..1525
                     /gene="dnaA"
                     /locus_tag="U1404_000872"
     CDS             152..1525
                     /gene="dnaA"
                     /locus_tag="U1404_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEM5347841.1"
                     /translation="MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIF
                     LNRPFKKDFWEKNFEELMIAASFEIYGEPLAIQYQFTEDEQEIRNTTNTRSSIVHQVQ
                     TLEPATPQETFKPVHSGIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELYNPLFIFG
                     GPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLD
                     LLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKW
                     GLTSEITPPDFETRIAILRNKCENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI
                     ATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQ
                     HIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEIT
                     SIKNKLR"
     gene            1679..2815
                     /gene="dnaN"
                     /locus_tag="U1404_000873"
     CDS             1679..2815
                     /gene="dnaN"
                     /locus_tag="U1404_000873"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000581170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM5347842.1"
                     /translation="MIQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGIT
                     LTGSNGQISIEHFISIQDENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK
                     QIVLTSGKSEITLKGKEAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRP
                     ILTGVHFVLTENKNLKTVATDSHRMSQRKLVLDTSGDDFNVVIPSRSLREFTAVFTDD
                     IETVEVFFSNNQILFRSEHISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSME
                     RARLLSNATQNGTVKLEIANNVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYL
                     IEALKATTSEQVKISFISSVRPFTLIPNNEGEDFIQLVTPVRTN"
     gene            3059..3940
                     /locus_tag="U1404_000874"
     CDS             3059..3940
                     /locus_tag="U1404_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347843.1"
                     /translation="MTLYILANPNAGSHTAEHIIFQIKESYPQLAVNIFMTVGPEDEK
                     SQIEAILKEFVSSEDQLMILGGDGTLSKALRFWPASLPFAYYPTGSGNDFAKAMNITS
                     LYRSVDAILEGKTSRIYVLNSSYGTVVNSMDFGFAAQVINGSTNSILKKILNKVKLGK
                     LTYLFFGIKTLFSKQAINLELTLDEKSYQLDNLFFISVANSLYFGGGIMIWPTASAKK
                     KEVDIVYFKNGNFYQRLQSLLALLTKRHESSHTIQHLTGVDVVLKSKEKLLLQIDGET
                     CTANEVTLTYQERSMYL"
     gene            3950..4153
                     /locus_tag="U1404_000875"
     CDS             3950..4153
                     /locus_tag="U1404_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HEM5347844.1"
                     /translation="MYQLGSFVEMKKPHACVIKSTGKKANKWEVIRLGADIKIRCTNC
                     DHVVMMSRHDFEQKMKQVLPSEA"
     gene            4257..4622
                     /locus_tag="U1404_000876"
     CDS             4257..4622
                     /locus_tag="U1404_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5347845.1"
                     /translation="MNQLAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPD
                     IDKLVQLAEIFGVSLDYLVLGKEPEKEIVVEQRGKMNGWEFLSEESKRPVENKEIFLF
                     ILSMAICIFVVWILTMITK"
     gene            4734..5849
                     /gene="ychF"
                     /locus_tag="U1404_000877"
     CDS             4734..5849
                     /gene="ychF"
                     /locus_tag="U1404_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002269933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEM5347846.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMV
                     EVPDERLQKLTELITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVH
                     VVRAFDDENVMREQGREDAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKD
                     KDSVAEFAVLEKIKPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKV
                     ADPESISYIQKIRDFAATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDK
                     LTRAAYHLLGLGTYFTAGEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDD
                     LMTYGSEKAVKEAGRLREEGKEYVVQDGDIMEFRFNV"
     gene            6007..6576
                     /locus_tag="U1404_000878"
     CDS             6007..6576
                     /locus_tag="U1404_000878"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000163933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEM5347847.1"
                     /translation="MTRLIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFNHDKIF
                     QADIGTTFIDGEKIYLVKPTTFMNESGKAVHALMAYYGLDATDILVAYDDLDMAVGKI
                     RFRQKGSAGGHNGIKSIVKHIGTQEFDRIKIGIGRPKGKMSVVNHVLSGFDTEDRIEI
                     DLALDKLDKAVNVYLEEDDFDTVMRKFNG"
     gene            6576..10070
                     /gene="mfd"
                     /locus_tag="U1404_000879"
     CDS             6576..10070
                     /gene="mfd"
                     /locus_tag="U1404_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEM5347848.1"
                     /translation="MNILDLLHKNKQINQWQSGLNKSTRQLLLGLTGTSKSLVMATAY
                     DSMAEKIMIVTATQNDAEKLVADLVAIIGSENVYNFFTDDSPIAEFVFASKERTQSRI
                     DSLNFLTDSTSSGILVASMAACRVLLPSPETYKGSKIKLEVGQEIEVDKLVNNLVNIG
                     YKKVSRVLTQGEFSQRGDILDIFDMQAETPYRIEFFGDEIDGIRIFDVDSQKSLENLD
                     EISISPASDIILSSEDYSRASQYIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRK
                     FLSCIYEQSWTLLDYLPKSSPLFLDDFHKISDKQAQFEKEIADLLTDDLQKGKTVSSL
                     KYFASTYAELRKYKPATFFSSFQKGLGNVKFDALYQFTQHPMQEFFHQIPLLKDELTR
                     YAKSNNTVVIQASSDVSLQTLQKTLQEYDIHLPVHAADKLVEGQQQVTIGQLASGFHL
                     MDEKLVFITEKEIFNKKMKRKTRRTNISNAERIKDYSELAVGDYVVHHVHGIGQYLGI
                     ETIEISGIHRDYLTVQYQNFDRISIPVEQIDLLSKYLASDGKAPKVNKLNDGRFQRTK
                     QKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDENQIEFDNYFTHVETDDQLRSIDEI
                     KQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYANFQ
                     ERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLVI
                     DEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPV
                     QTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQ
                     MSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGR
                     VGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNILG
                     AAQSGFIDSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYLPSDYIGDQRQ
                     KIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQVFCHTVLR
                     RQHQVTVTFEPMACQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKKEYEILE
                     ELISFAEKLKEIKARKAE"
     gene            10120..10392
                     /locus_tag="U1404_000880"
     CDS             10120..10392
                     /locus_tag="U1404_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEM5347849.1"
                     /translation="MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVN
                     DQVEIQFGNKLLTVKVLEMKDSTKKEDALKMYEIISEKRIEKDEEI"
     gene            10379..10747
                     /locus_tag="U1404_000881"
     CDS             10379..10747
                     /locus_tag="U1404_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEM5347850.1"
                     /translation="MKKSKILQLNNAFIQSERKKTQHQLAERQQKNRFMGAILILVIF
                     LFMLPAYNLVGTYTNIQQQEKKLAELEKNYEELTKEQKQEAEMVAKLKNEEYAAKYVR
                     AKYQYSKEGEFVYNIPGLPK"
     gene            10870..12150
                     /locus_tag="U1404_000882"
     CDS             10870..12150
                     /locus_tag="U1404_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEM5347851.1"
                     /translation="MQKKLLVWLLPVLFGWQVVDSTEIPFELTAQEEYELTHTIYDQY
                     FQTIPQNPNVFQTENLYSDEELTIAGGQLQPNQHFSITDVLVNSKKELVFQIDDKGYI
                     LASRHLLFDDVIVTETTVEQTYWTKKGFTLLTSPIANEATEIKNDLQPYQAVMVSKIV
                     TTSLGDFAYVTDKGWIAVNNLSKTDNRVEAVQELLTNKYSKDTIGIYVKQLSTGQTAG
                     VNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAGGSGSLS
                     KTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAKTGSEWSMVTR
                     ETSAEIAGKMMESLYIQNGYVLESLLSTQFDNQRISKDISVPVAHKIGDADDVKHDVA
                     IVYAGSPFVLSIFTDKSNYDEITQIANDIYRILK"
     gene            12151..13419
                     /gene="tilS"
                     /locus_tag="U1404_000883"
     CDS             12151..13419
                     /gene="tilS"
                     /locus_tag="U1404_000883"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEM5347852.1"
                     /translation="MKDRFLKVTLDGHFFDKHNKVLVAVSGGLDSMNLFHLLYECKQV
                     LGIELGIAHINHGQREESVIEEKYLRQLAEESNVPFYLSYFEGVFSEEAARKWRYGFF
                     ATIMEKEGYTALVTAHHADDQAETVFMRLIRGGRLRHLSAIQPTQPFATGELIRPLLS
                     FKKADFEKLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIEFTLNNFAVDTNNLFQ
                     ALRDLTQDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDLQLSRPQFNEVLHILRSKAN
                     YYHLLKNDYMLEKDYHRFQIYKIGPETDSQPEKIMIKSEGIFSYGSYIFSLNHPLEEA
                     DSILYFPTENPIVVRRRQAGDTILINGVNKKLRRWFIDNKISQKVRQNALIIEQNGEI
                     YGITNLVSSDLSKSVKNDIIKATLYIKMKE"
     gene            13427..13969
                     /gene="hpt"
                     /locus_tag="U1404_000884"
     CDS             13427..13969
                     /gene="hpt"
                     /locus_tag="U1404_000884"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEM5347853.1"
                     /translation="MLDKDIKKILVSEEEIVAKCKELGQILATDYADKNPILVGILKG
                     SIPFMAELMKHIDAHVETDYMVVSSYHGGTESCGTVKIIKDLDNSVAGRHIIFIEDII
                     DTGRTLKELKELFALRQAGSIKIATLLDKPEGRVVEIEPDYTCFTIPNEFVVGFGLDY
                     DENYRNLPYVGVLKEEVYTK"
     gene            13991..15961
                     /gene="ftsH"
                     /locus_tag="U1404_000885"
     CDS             13991..15961
                     /gene="ftsH"
                     /locus_tag="U1404_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEM5347854.1"
                     /translation="MNNQPNKGFIKNPFLVILVIATIVTAFQFFNAGQQVATQEISYS
                     QVVTELKNNNVSEITYQPNSSVIEITGKYKTEQEAKDELASSIKLFQVSSKVKYKNFK
                     SLILPSETNLSELQALANENGVKVTIKPESSNGLWLNIVFNLLPLIIAGVFFMMMMNQ
                     GGGARGAMNFGRNKAKALEQSNIKVRFSDVAGAEEEKQELVEVVEFLKDPKRFTKLGA
                     RIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDA
                     KKAAPAIIFIDEIDAVGRQRGVGMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATN
                     RSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAADVDLKLVAQQTPGF
                     VGADLENVLNEAALVAARRNKTVIDASDIDEAEDRVIAGPSKKDRQVSAKEREIVAYH
                     EAGHTIVGLVLSNAREVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGG
                     RVAEEIIFNTQTTGASNDFEQATQMARAMVAEYGMSEKMGPMQYEGSHAMFGGQTTQK
                     HISEQTAYELDNEVRDLLNEARNKAADIIQSNRDTHKLIAEALLKYETLDSVQIKSLY
                     ETGKMPENIERDDEDVHPLSYEEVKEKINTKE"
BASE COUNT         5409 a         2744 c         3202 g         4734 t
ORIGIN      
        1 acaaaaagtc aggaccagca aaggttctga cttttattca catcttgtgg aaaacttttc
       61 ttaacagtgt ggatttttaa aattatctgt ggaaaacttt tgttttttat ggtacactat
      121 tctaacgaat ataatgtgaa agggggaaaa tatgaaccaa gaacaacttt tttggcaacg
      181 atttattgaa ttggcaaagg taaattttaa gccatctatt tatgattttt atgtcgctga
      241 tgcaaaatta ctcggaatca accagcaagt tgccaatatt ttcttaaatc gtccatttaa
      301 aaaagatttc tgggaaaaaa acttcgaaga gttaatgatt gccgctagtt ttgaaatcta
      361 cggagagcct cttgccatcc aatatcaatt tacagaggat gaacaggaga ttaggaatac
      421 tacaaacaca agaagttcaa tagttcacca ggtacagaca cttgagccgg ctactcctca
      481 agaaactttt aaaccggttc attctggtat aaaatcccag tacacctttg ctaattttgt
      541 acaaggagac aataatcact gggcaaaggc tgcagcttta gctgtatctg ataacctagg
      601 tgagctctac aatccattat tcatttttgg tggtcctggt cttggaaaaa ctcatatttt
      661 aaatgcgatt ggaaataagg ttctagccga taatccccag gcaaggataa aatatgtctc
      721 atcggaaaca ttcatcaatg aatttttaga acacctccgt ctcaatgata tggaaagttt
      781 caaaaaaacc tatcgcaatc tggacttact tctaattgat gacattcagt ctctccgtaa
      841 taaagcaaca acacaggaag aatttttcca tacttttaat gcgcttcatg aaaaaaataa
      901 gcagattgta ctcacaagcg accgtaatcc cgatcactta gacaatttgg aagaaagact
      961 agtaacacgt ttcaaatggg ggttaaccag tgaaatcact ccacctgatt ttgaaacacg
     1021 tatcgcaatt ttacgtaaca agtgcgagaa cctgccttac aactttacaa atgagacgct
     1081 atcctatcta gctgggcaat ttgattcgaa cgtacgtgac cttgaaggtg ccttaaaaga
     1141 tatccatttg atagccacta tgcgtcaact gtctgagata agtgtcgagg ttgctgctga
     1201 ggctattcga tcaagaaaac aaacaaatcc acaaaatatg gttattccta ttgagaaaat
     1261 ccaaaccgaa gtgggaaatt tctacggtgt cagcttgaaa gaattaaaag gttctaagcg
     1321 tgttcaacat atcgttcacg cgcgacaagt tgctatgttt ttagcacgtg aaatgacaga
     1381 caattccctt ccaaaaattg ggaaagaatt tggtaatcga gaccatacaa ccgttatgca
     1441 tgcatacaat aaaataaaaa ctctcctctt ggatgatgag aatttagaaa tagagattac
     1501 cagtataaaa aataaacttc gttaacctgt gtataacttt tttaaaaaac tctgtttttt
     1561 ccacaagttg tgaacaagtt aatttccgca gttttattgg tctttcatca cttttccaca
     1621 gaatacacag agactactat tactattaac cttatagata ataaataaag gagaatccat
     1681 gattcaattt tctattaata aaaatatatt tctacaagca cttagtatta ctaaacgggc
     1741 aatcagtacc aaaaatgcta ttccaattct ttcaacagta aaaattacag taactagtga
     1801 aggaatcact ttaactggtt caaatggaca aatctcgatt gaacatttta tttctattca
     1861 agatgaaaat gcaggacttt tgatcagttc tccaggctcc attctcttag aagctggttt
     1921 ctttattaat gtcgtatcca gcatgccgga tttagtcctt gacttcaatg aaattgaaca
     1981 aaagcaaatc gttttgacaa gtggtaagtc tgaaatcaca ttaaagggaa aagaagcaga
     2041 acagtatcct cgtttacagg aagttccaac ttcaaaacca ttggtgttag aaaccaaagt
     2101 attaaaacaa acaattaatg aaacagcatt tgcagcttct acacaagaaa gtcgtcctat
     2161 tcttacgggt gttcattttg ttttaacaga aaataaaaat ctaaaaactg ttgcaacaga
     2221 ttcacaccgt atgagccaac ggaaattggt ccttgatacc tctggtgatg attttaatgt
     2281 tgtcattcca agtcgttctc tccgtgaatt tactgcagtt tttacagatg atattgaaac
     2341 agtagaagtc ttcttttcaa ataatcaaat cctttttaga agcgagcata ttagcttcta
     2401 tacacgctta ttagaaggta cctaccctga taccgaccgc ttaattccaa ctgagtttaa
     2461 aacaactgca atttttgata ctgcaaatct tcgtcactcg atggagcgtg ctcgtcttct
     2521 ttcaaatgca acccaaaatg gtacagtaaa actagaaatt gctaataatg ttgtatcggc
     2581 tcatgtaaat tctccagaag ttggacgtgt gaatgaggaa ttagatactg tagaagtatc
     2641 aggtgaagat ttagtaatca gctttaaccc aacttacttg atagaagcat tgaaagccac
     2701 aactagtgaa caagtgaaaa ttagctttat ctcttctgtc cgtccattta cattgattcc
     2761 aaataatgaa ggggaagatt ttattcaatt ggttacacca gttcgtacca actaaatagt
     2821 attaaggagg ctgggcaaaa agaccaacct cgcttctcag ggttcgtgtc aacatctcag
     2881 cgcagtggtt gattggcaga tttgttcgtg ttttacactc caaatctgac ctaatcaact
     2941 gtgcgggggc gggaagacga actctttttt tgaccagtcg agttctttcc cgctcccttt
     3001 attttatact aaaaaatagc acctagctta tttttatata tttagtgatg gggaataaat
     3061 gacgttatat atattagcta atcctaatgc tggtagccat actgctgaac atatcatatt
     3121 ccaaataaaa gaaagttatc cacagcttgc agttaacatt tttatgacag ttggtcctga
     3181 ggatgaaaaa agtcaaatag aggctatttt aaaggagttt gtcagtagtg aggaccaatt
     3241 aatgatttta ggtggagacg gcacactgtc taaagctttg cgtttttggc cagctagtct
     3301 accgtttgct tattatccaa caggatctgg aaatgatttt gctaaggcaa tgaatataac
     3361 atcgctctat agaagtgtag atgccatttt agagggaaaa acaagtcgga tatatgtttt
     3421 aaatagttca tacggaacgg ttgtaaacag tatggatttt ggctttgcag ctcaagttat
     3481 caatggttca acgaattcaa ttttgaaaaa aattctgaac aaggtaaaac ttgggaagtt
     3541 aacttatcta ttctttggta ttaaaacatt attttcaaaa caagctataa acttagaatt
     3601 aactcttgat gaaaaatctt atcagttaga taatctcttt tttatttctg tagcaaatag
     3661 tctttatttt ggtggaggaa tcatgatatg gccaacagca agtgctaaaa agaaggaagt
     3721 agatattgtt tacttcaaaa atggaaattt ctaccaacgt ctacaatcat tgttagcctt
     3781 attaacgaag aggcatgaat cttctcatac aattcagcat ttaacagggg tagatgtagt
     3841 tttaaaatca aaagaaaaat tattattgca aatagatgga gagacatgca ctgcaaatga
     3901 ggtaacgtta acctatcagg aaagaagtat gtatctttaa ggaggaagta tgtatcaatt
     3961 aggatcattt gtcgaaatga aaaagcctca tgcctgtgtc atcaaatcga ccggaaagaa
     4021 ggcaaataag tgggaggtta tccgtctagg agcggatatt aaaatccgtt gtaccaactg
     4081 tgaccatgta gtcatgatga gccggcatga ttttgaacaa aaaatgaaac aagttctacc
     4141 aagtgaagcc tagttgacag tttgcaactg ctggttgcga atatttccta aaaagtgcta
     4201 gtcaactgtt cctttctaaa ctataataga cttagaaaaa agaggaggaa atgatcatga
     4261 atcagttagc acagcaaatt cgaattttac gcacagccaa gaacctatcc caagatgagt
     4321 tggcagagaa actctatatt tcccgtcagg ctgtttccaa gtgggaaaat ggcgaagcaa
     4381 cgccagatat tgacaaactg gttcagctag cagaaatctt tggtgtcagt ctggattatc
     4441 tggttttagg aaaagaacct gagaaggaaa ttgtggtgga acaacgagga aaaatgaatg
     4501 gttgggaatt tttaagtgaa gaatccaagc gaccagttga aaataaagaa atttttctgt
     4561 ttatcctctc tatggccatc tgtatttttg tagtttggat cttgaccatg attacaaaat
     4621 aatggattat ttattcagca ttatttttaa cgaagcttgc taatcggcaa gctttttctc
     4681 tacttttctg ctataatagt catgattgaa tttttaattg gagagtaaaa aacatggctt
     4741 taacagcagg aatcgtcggt ttgccaaacg ttggtaaatc aactctattt aacgcaatta
     4801 ccaaggcagg agcagaagct gcaaactacc ctttcgcgac cattgatcca aacgtcggca
     4861 tggtggaagt gcccgatgag cgtttgcaga aattgacaga actcatcacc cctaaaaaga
     4921 cagtgccaac gacttttgaa tttactgata ttgccggtat cgtaaaaggt gcttctaaag
     4981 gtgaaggact tggaaataaa ttcttggcca atatccgcga agttgatgcg attgtccacg
     5041 ttgtgcgtgc ctttgacgat gaaaatgtta tgcgtgaaca aggccgtgaa gacgcctttg
     5101 ttgatcctat cgcagatatt gatactatta acctagaatt gattttggcg gacctagaga
     5161 gcatcaacaa gcgttatgcg cgtgtagaaa aaatggcccg tacgcaaaaa gacaaggatt
     5221 ctgtcgcaga atttgcagtt cttgaaaaaa tcaaacctgt cctagaagac ggaaaatctg
     5281 ctcgtacagt tgacttcaca gatgaagaac aaaaaatcgt taagcaactc ttcctcttga
     5341 ccactaaacc agtcctctat gttgccaacg tcgatgaaga caaggtagca gatcctgagt
     5401 ctatcagtta tattcagaaa atccgtgact ttgcggcaac agaaaatgca gaagtggtgg
     5461 tgatttctgc gcgtgctgaa gaagaaattt cagaactcga cgatgaagac aagggcgagt
     5521 ttttagaagc actcggatta acagaatctg gcgtggacaa attaacacgt gcagcctatc
     5581 acttgcttgg tctaggcacc tactttacag caggggagaa ggaggttcgt gcttggacct
     5641 tcaaacgtgg tatgaaagct cctcagtgtg caggcattat ccattcagac ttcgaaaaag
     5701 gttttatccg tgccgttacc atgtcatacg atgatttaat gacctacggc tctgagaagg
     5761 ctgttaaaga agcaggacgc cttcgtgaag aaggaaaaga gtacgtggtt caagatgggg
     5821 acatcatgga gttccgcttt aatgtttgat tgctaaactg tccttattct tcgttgtttt
     5881 accttgccat accatcagta ttgtctgcgg tttcaacgcc tagactaaga acagtttatc
     5941 gcatcaaaga ggatgattac ttggttggaa agctttttcc agccttttgg tatttaagga
     6001 gaaaaaatga cacgattgat catcggtctg ggaaatcccg gagaccgcta ttttgaaaca
     6061 aaacataacg ttggttttat gctgctggat aagattgcta agcgtgaaaa tgtgaccttt
     6121 aatcacgata agattttcca agctgacatt ggcacaacct ttattgacgg cgaaaaaatc
     6181 tatctagtaa agccaacgac cttcatgaac gaatcaggta aggctgttca tgccctgatg
     6241 gcttattatg gtctggatgc aactgatatt ttagtagctt atgatgactt agacatggct
     6301 gtaggaaaaa ttcgtttccg tcaaaaaggc tcagctggtg gccacaatgg tatcaaatcc
     6361 attgtcaagc atattggaac acaggaattt gaccgtatca agattggtat tgggcgtcct
     6421 aaaggaaaaa tgagcgttgt caaccacgtc ttatcaggat ttgatacaga agaccgtatt
     6481 gaaatcgact tagcactaga taaacttgac aaggctgtca acgtatatct cgaagaagat
     6541 gattttgata cagtaatgag aaagtttaac ggataatgaa tatactcgat ttacttcaca
     6601 agaacaagca aatcaatcag tggcagtctg gcttaaacaa gtcaactcgc caactattat
     6661 taggactcac tggaaccagt aagtcattag tcatggcgac tgcctatgat agtatggctg
     6721 agaaaataat gattgtgact gctactcaaa atgatgctga gaaattagtt gcagatttag
     6781 tagccattat tggaagtgag aatgtttaca acttttttac agatgatagt cctattgccg
     6841 agtttgtttt tgcatcaaaa gaacggactc aatcaaggat tgacagttta aatttcttga
     6901 cagattctac tagttcagga attttagttg ctagtatggc tgcttgtcgg gtcttattgc
     6961 caagtcctga gacttataaa ggttctaaaa taaagcttga agttggtcaa gaaatagaag
     7021 ttgacaaact tgtaaataat cttgtcaaca tcggctacaa aaaagtgtct cgtgtattaa
     7081 cccagggaga atttagccaa cgaggtgata ttctagatat ttttgacatg caagcagaaa
     7141 ctccttaccg aatagaattt tttggagatg agattgatgg cattcgtatt tttgatgttg
     7201 acagtcaaaa atccttagaa aatctagacg aaatctcgat ctctccagct tccgatatca
     7261 ttttgtcttc ggaagactat agtagagcta gccaatacat tcagacagct attgaacaat
     7321 cgaccctaga ggagcaacag tcttacctac gagaagtctt agctgatatg cagacggagt
     7381 accggcatcc agatttgcgt aaattcttgt cctgtatcta tgaacaatca tggacattgt
     7441 tggattactt gccaaagagt tctcccttat ttttggatga ttttcataaa atctctgata
     7501 agcaggctca atttgaaaaa gaaattgcag acttgttgac agatgattta cagaagggta
     7561 aaacagtgtc aagtttgaaa tattttgcct caacttacgc tgaattgaga aaatacaaac
     7621 ctgccacctt cttttcaagt tttcaaaaag gtttaggcaa tgtaaagttt gatgctcttt
     7681 atcaatttac acagcatcct atgcaggaat ttttccacca gattccactg ttaaaagatg
     7741 aattgactcg gtatgcgaaa tcaaacaata ccgttgttat tcaagcgagt tctgatgtga
     7801 gtttacagac tttacagaaa actttacaag agtatgatat tcatcttcca gtacatgcag
     7861 cagataagtt agtagaaggt cagcaacagg ttacgattgg tcagttagct tcaggttttc
     7921 atttgatgga tgagaaacta gttttcatca ctgaaaaaga gattttcaat aagaaaatga
     7981 agcgtaagac acgtagaacc aatatttcta acgctgaacg tattaaggac tatagtgaat
     8041 tagcagttgg tgactatgtt gttcaccatg ttcatggtat cggtcaatac ctaggaattg
     8101 agactattga aatttcaggc attcatcgtg attatttaac ggttcaatat caaaacttcg
     8161 atcgcatttc tattcctgta gaacaaattg atcttctctc caaatactta gcgtccgatg
     8221 ggaaagctcc aaaagttaat aaactaaacg atggccggtt ccaacgaact aagcaaaaag
     8281 ttcagaagca agtggaggat attgcagatg atttgattaa gctttatgcg gagcggagtc
     8341 agctgaaagg ctttgccttt tcaccagatg atgagaatca gattgagttt gacaactact
     8401 ttacacatgt ggaaaccgac gaccaacttc gttccattga tgaaatcaaa caagatatgg
     8461 aaaaagactc tccaatggat cgtttgctgg taggagatgt cggctttggt aagacagagg
     8521 tagctatgcg cgctgctttc aaagcagtca atgatggcaa gcaagtagct attcttgttc
     8581 ctacgactgt tttagcccag caacactatg ctaatttcca ggaacgattt gcggaatttc
     8641 ctgtcaatgt ggatgttatg agtcgtttta aaacaaaggc agagcaggaa aaaacacttg
     8701 agaagttgaa aaaaggccaa gttgacatct tgattggtac ccatcgcctt ctatcaaaag
     8761 atgttgtttt tgctgattta ggtttactgg ttattgacga agagcaacgg tttggtgtca
     8821 agcataagga acgcttgaag gaattgaaaa agaaaataga tgtcctaacc ttgactgcaa
     8881 ctccgattcc tcggacattg caaatgtcca tgctgggaat ccgcgattta tcagtaattg
     8941 agactccacc gacaaatcgc tatcctgtac aaacttatgt gatggaaaca aatccttccg
     9001 ttatccgaga tgcaatgctt cgtgagatag atcgcggagg tcaggtttac tatctttaca
     9061 ataaagttga caccattgaa cagaaagtgt ctgaattaaa agaattggtt ccagaagcta
     9121 ctataggata cgtccatgga caaatgtcgg agatccaatt agaaaatact ctctatgctt
     9181 ttgtagaggg tgaatatgat attctagtga ccacaacaat catcgaaaca ggtgttgata
     9241 ttccaaatgc taatacactg tttattgaaa atgcagatca tatgggactg tcaactcttt
     9301 atcaacttag aggacgtgtt ggccgttcca gtcggattgc ctatgcctat ctcatgtacc
     9361 gtccagacaa gtccttgaca gaagtagctg aaaaacgttt ggaggcaatc aagggcttta
     9421 cagaactagg atcaggtttc aagattgcca tgcaagattt gtccattcgt ggtgcgggaa
     9481 atattttagg tgctgctcag tcaggtttta ttgattctgt gggatatgag atgtattcac
     9541 aattgctgga acaagccatc ttggaaaaac aaggtaaggc aactcaacgt cagaagagta
     9601 attcagaggt caatttacag attgatgcct atctaccaag tgattatatt ggtgaccagc
     9661 gacaaaaaat tgaaatttac aagcgtataa agaatattga cagtcgtgtc aactatcaag
     9721 aattacagga agaattgatt gaccgttttg gagagtatcc tgatgtagta gcctacttgc
     9781 ttgaaatcgg tctattgaag tcatttttag accaagtttt ctgtcataca gttcttagac
     9841 gacaacatca agtgacagta acattcgaac ctatggcttg tcaaattttc ctaacgcaag
     9901 attactttga agctttatct gtgacaaatt tgaaagctca gataacggaa aataaaggaa
     9961 aactagctgt tgtgtttaac attcaacaga aaaaagaata tgaaatatta gaggaattga
    10021 tttcttttgc cgaaaaatta aaagaaatta aagcaaggaa ggcagaataa atttctcaaa
    10081 taccttgaaa aatggtaaaa taatgaactg aggtaaagta tgagactaga taaatatttg
    10141 aaagtatccc gcattattaa gcgtcgaaca gttgcgaagg aagttgccga taaaggacga
    10201 ataaaagtca atgggatttt ggcgaaatct tcaacagatt taaaagtaaa tgatcaggtt
    10261 gaaatccaat ttggtaataa actactcact gtaaaagtac ttgaaatgaa agattcgact
    10321 aaaaaagaag acgcactgaa aatgtatgaa attatcagtg aaaaaaggat agaaaaagat
    10381 gaagaaatct aaaattctac aactgaataa tgcctttatt cagtcggagc gtaaaaaaac
    10441 tcaacatcaa ttggcagaac gccaacaaaa aaatcgtttt atgggtgcaa ttctcattct
    10501 agttatcttt ctttttatgt tgcctgccta taatcttgtt gggacttaca ctaatattca
    10561 gcagcaggaa aagaaacttg ctgaattgga aaaaaattat gaagaactga ccaaagaaca
    10621 gaagcaggaa gcagagatgg ttgcaaaatt gaaaaatgag gaatacgcag caaagtatgt
    10681 tcgggctaag tatcaatact ctaaagaagg ggaatttgtc tacaatattc cagggttacc
    10741 aaaatgaccg aatctatttt taaaattgta gagcaatttt tacagcattc tgatgaaaaa
    10801 ttagaagagt tgaatcaaaa gaatagagaa ttaaagttag aagaaaatga atcgtagaaa
    10861 ggagggagta tgcagaaaaa actgctcgta tggttattgc cagttttatt tggatggcag
    10921 gtagtcgata gtacagaaat accatttgaa ctcacagcgc aagaagaata cgaattgact
    10981 catactatct atgatcagta ttttcaaact atccctcaaa acccaaatgt ttttcaaact
    11041 gagaatcttt attcggatga agaactgact atagcaggtg gacaattaca gccgaaccaa
    11101 catttttcta ttacggatgt tctagtcaat agcaaaaaag aattggtttt ccaaatagat
    11161 gacaagggtt acattcttgc aagtaggcat ctactatttg atgatgtaat tgttacagaa
    11221 actactgttg agcaaactta ttggacaaaa aaaggtttca cattgttaac ctcaccaatt
    11281 gctaacgaag ctacggaaat aaaaaatgat ttacaaccct atcaagctgt tatggtttct
    11341 aaaattgtga caacttccct aggtgatttt gcctatgtta cagataaagg ttggattgca
    11401 gtaaataatc tttctaaaac ggataataga gtagaagccg ttcaagagtt gttgactaac
    11461 aaatattcca aagatactat tggtatatat gtgaaacaat tgtcaacagg tcaaactgca
    11521 ggtgtaaatc aagagaaact attctattct gccagcattg ctaaactacc aattctttat
    11581 tacgttcaag agcaactgaa tgctgggtat attgatttga ctactaaagt gaaatataca
    11641 gccgaatcta tatccttccc aggagcttat gttgctggag gaagtggttc actgtcaaaa
    11701 actcctgata acaaagatta ttcagtggaa gaattgatca ataagactgc taaagagtca
    11761 gataatgtag ctagtaattt actttcttat tatgtagcta ataaattcga ttccaatttt
    11821 tatcaagtaa taactgctaa aacaggtagt gagtggagta tggttacacg tgaaacttca
    11881 gctgaaatcg cagggaaaat gatggaatcc ttatatattc aaaatggcta tgtgctagaa
    11941 agtttgttat ctactcaatt tgataatcaa cgtatttcga aagacatctc agttccagtt
    12001 gctcataaaa ttggcgatgc agatgatgtc aaacacgatg tagcgattgt ttacgcaggg
    12061 tctccttttg ttttatctat ttttacagat aaatcaaatt atgatgagat tacacaaatt
    12121 gcaaatgata tttacaggat tttaaagtaa atgaaagata gatttttaaa agtgacactg
    12181 gatggtcact tttttgataa acataataaa gtactagtag ccgtatctgg tgggttagat
    12241 tctatgaacc tattccatct tttatacgaa tgcaaacaag tgttagggat tgaacttgga
    12301 attgcccata ttaatcatgg acagagagaa gaatctgtca ttgaggaaaa atatcttaga
    12361 cagttagcag aagaaagtaa tgttcccttt tatctgtcct attttgaagg tgttttttca
    12421 gaagaagcag cgcgaaaatg gcgttatgga ttttttgcta caatcatgga gaaggaaggc
    12481 tacactgcac tagtgacagc ccaccatgca gatgatcaag cagaaactgt ctttatgcga
    12541 ttgattagag gagggcgttt acgtcactta tcagcaattc aaccgactca gccttttgca
    12601 acaggagaac ttattcgacc acttttatct tttaaaaagg cagattttga aaagctattt
    12661 cattttgaag attgcagcaa tgcagatttc aaatattttc gaaatagagt cagaaatgac
    12721 tatttaccaa agttaaaaca ggaaaatcct aaaatcgaat ttactctcaa taattttgca
    12781 gttgatacaa ataatctatt tcaagcgcta agagatttga cacaggattt atccgttaca
    12841 gatgtgatga gttttcaaca acagacacct gcggtacaaa gttatctatt agaggaatat
    12901 ttggaaaaat ttcctgattt acagctctct cgtccacaat ttaatgaagt attacacatc
    12961 ttgcgttcaa aagctaacta ctatcattta ttgaaaaatg attacatgtt agagaaggat
    13021 tatcatcgtt ttcaaattta taaaatagga ccagagacgg atagtcaacc agaaaaaatc
    13081 atgataaaat cagagggtat tttttcttac ggttcatata ttttttctct caatcatcct
    13141 ttggaagaag cggatagtat tttatatttt cctacagaaa atccaattgt agtgaggaga
    13201 aggcaggctg gggataccat tttaataaac ggagtaaata aaaaactccg ccgttggttt
    13261 attgataata aaatctcaca gaaagttcga caaaatgcgc ttattatcga gcagaatgga
    13321 gaaatttatg gaattacgaa tcttgttagc agtgatttga gtaaatcagt aaaaaatgat
    13381 ataatcaaag ctaccttata tataaaaatg aaagagtaga acaactatgt tggacaaaga
    13441 tattaagaaa attcttgttt cagaagaaga aatcgttgca aaatgcaaag aactcggtca
    13501 aattctagca acagactatg cagataagaa tcctattctt gtaggaattt taaaaggttc
    13561 tatcccattt atggcagaat taatgaaaca tattgatgcc catgtagaaa cggattatat
    13621 ggttgtttct agctaccatg gtggtactga gagttgtggt accgttaaga ttatcaagga
    13681 tttggataat agtgttgcag gtcgacatat catctttata gaggatatta ttgacacagg
    13741 ccgcacatta aaagaattga aagaactctt tgctttgcgt caagcaggtt ctattaaaat
    13801 tgctactctt cttgataaac cagaaggtcg tgttgttgaa atcgagccag actatacttg
    13861 ctttactatt ccaaatgaat ttgtagttgg atttggctta gattatgatg aaaattatcg
    13921 taatcttcct tatgttggtg tactcaaaga ggaagtttac acaaaataga aaaaggtttc
    13981 ctactatatt atgaacaatc aaccaaataa aggatttata aaaaatcctt ttctcgttat
    14041 tctcgttatt gccactattg ttacagcctt tcaatttttt aacgctggtc agcaagtagc
    14101 aactcaagaa atcagttatt cacaagtagt aactgaattg aaaaataata atgtatctga
    14161 aattacttat caaccaaatt caagtgttat tgaaattact ggtaagtaca aaacagaaca
    14221 ggaagctaaa gatgagttag cttcatctat taagttattc caagtttcta gtaaagttaa
    14281 gtataaaaac tttaagtcac taattttacc gtcagaaacg aatttgtcag agctacaagc
    14341 tcttgcaaat gaaaatggag taaaggttac tattaaacct gaaagttcaa atggactttg
    14401 gttaaatatc gtctttaatt tgttaccgct tatcattgct ggtgtattct tcatgatgat
    14461 gatgaaccag ggtggtggag cacgtggtgc aatgaacttt ggacggaata aagctaaagc
    14521 tttggaacaa agtaacatca aggtacgttt ctcagatgta gcaggtgcag aggaagaaaa
    14581 acaagaatta gttgaagttg ttgaattttt gaaggatcca aaacgcttta ctaaacttgg
    14641 agcacgtatt ccagcaggtg tactactaga gggtcctcca ggaaccggta aaaccttgct
    14701 tgccaaagca gtagcgggtg aagcgggtgt accattcttc tccatttctg gttcagattt
    14761 tgttgaaatg tttgttggtg tcggtgccag ccgtgttcgt tcattatttg aagatgcaaa
    14821 aaaagcagca ccagccatta ttttcatcga tgaaatcgat gctgtcggtc gccaacgtgg
    14881 tgtcggcatg ggtggcggta acgatgaacg tgaacaaacc ctcaaccaac tcttaattga
    14941 aatggatggt tttgaaggga atgaagggat tattgtcatt gccgcaacca accgtagtga
    15001 tgttttagac cctgcccttc ttcgtccagg tcgttttgac cgtaaagtat tggttggtcg
    15061 tccggatgtt aaaggacgtg aagcaatcct taaagttcat gcgaagaata aaccactagc
    15121 agcagatgta gatttgaaat tagtagcaca acaaacacca ggatttgttg gtgcagattt
    15181 agagaatgtt cttaacgaag cagcccttgt agctgcccgt cgaaacaaga ctgtcattga
    15241 tgcttcagat attgacgaag cagaagatcg tgtcattgca ggtccttcta agaaagaccg
    15301 tcaagtttca gccaaagaac gcgaaatcgt tgcctaccat gaagcaggtc atacaattgt
    15361 tggtctcgta ctatcaaatg cacgtgaagt tcacaaagta acaattgttc cccgcggtcg
    15421 cgcaggtgga tacatgattg cccttcctaa agaagatcaa atgcttcttt ctaaagaaga
    15481 tatgaaggag caattggctg ggcttatggg tggtcgtgtt gcggaagaaa ttatttttaa
    15541 tacacagacc acaggtgcct caaatgactt tgaacaagct acacagatgg ctcgtgctat
    15601 ggttgcagaa tatggtatga gtgaaaaaat gggaccaatg cagtatgaag gcagtcatgc
    15661 aatgtttggt ggacaaacaa ctcaaaaaca tatttctgag caaactgcat atgagttaga
    15721 taatgaagta cgtgatttgt taaatgaagc tcgaaataaa gctgcagata ttattcaatc
    15781 aaaccgtgat acacacaaac tgattgcaga agcattgctt aaatacgaaa ccctagacag
    15841 tgttcagatc aaatctctct atgaaacagg caaaatgcca gagaatattg aacgtgatga
    15901 tgaagatgtt cacccccttt cttatgaaga ggtaaaagag aaaattaata cgaaagagta
    15961 gtataaaaat actcttggca agacattccc tcactctcaa ccactaaaat aaccacaaat
    16021 ccttcgctaa gtacataatc ttggcgaggg ctttttttac aaaaaagggc atttacaaga
    16081 aaaacgaat
//
LOCUS       DASGCC010000041        16027 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.041, whole genome shotgun sequence.
ACCESSION   DASGCC010000041 DASGCC010000000
VERSION     DASGCC010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16027
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.041"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(191..1546)
                     /locus_tag="U1404_000886"
     CDS             complement(191..1546)
                     /locus_tag="U1404_000886"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM5347855.1"
                     /translation="MKVIKFGGSSLASAEQLEKVFNIVQSDSERRFVVVSAPGKRNAE
                     DTKVTDALIKYYKEYVNGKDVTASQEWIINRYQAMVDELGFTANSMKKIADSIISLAS
                     LPIDDNEFLYDAFLAAGEDNNAKLIAEYFTHRGLPARYVHPKKAGIIVSSEPGNARIL
                     PSSYDKIEELRDTDEVLIIPGFFGVTVDNQICTFSRGGSDITGSIIAAGVKADLYENF
                     TDVDGIFAAHPGIIKNPHSIKELTYREMRELAYAGFSVLHDEALLPAYRGRIPLVIKN
                     TNNPTHPGTRIVHKHTEQTVPVVGIAADDGFVSINLSKYLMNREVGFGRKVLQILEDL
                     NIRWEHMPTGIDDLSIVVRERELTPIKEEEILRQLNTKMEVDKAEIEHGLSIIMIVGE
                     NMKSHVGVTATATTALSKQNVNLAMISQGASEVSVMFVVKTEEKKRALHALYEAFFNE
                     Q"
     gene            1723..2364
                     /locus_tag="U1404_000887"
     CDS             1723..2364
                     /locus_tag="U1404_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEM5347856.1"
                     /translation="MVKAIIFDMDGVLFDTETFYFQRRADFLATKGLSVDHLDPSIFV
                     GGRASQIWQRILGDDYDNWDVPALEEEYRVYKEKRPTPYAERIFPEVKAVLERLTIQG
                     IPVVLASNTDRSEIERALLDAGIRFHFSHVFSAMDCEAPKPDPTVYMKAASATGVAKS
                     DILVFEDSAKGIEAAKKAGLTVWAIRDQHYGIDQSKADKLVDNLEEAFDLLRF"
     gene            2803..3594
                     /locus_tag="U1404_000888"
     CDS             2803..3594
                     /locus_tag="U1404_000888"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEM5347857.1"
                     /translation="MAYQTIRYEVIDSVAILTLNRPEVANGFNIPMCEEILEAIRLAE
                     GDASVKILQIQAQGSIFSVGGDLVEMKRAVDDDDIASLVKIAELVNDISFAMKKLSKV
                     VIMVTDGAVAGAAANMAVAADFVIASSKTKFIQAFVGVGLAPDAGGLFLLSRAIGANR
                     ASHLAMTGEGLSADKALEYGIVYKLAEPEKLEKTVAQVIKKLLRGSVNSYAAIKQLTW
                     ESQFKDWESYRRLELDLQETLAYKEDFKEGVRAHAERRRPVFTGD"
     gene            3674..4108
                     /locus_tag="U1404_000889"
     CDS             3674..4108
                     /locus_tag="U1404_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5347858.1"
                     /translation="MEDPKVNEYLTAIFNNVLVIEETSLRGSRFNDISIKEMHTIDVI
                     GSIDGATPSDVARTLMVTLGTVTTSLNNLERKGYVERIRSTKDRRVVHLYLTKKGRLV
                     YRLHQRFHNEMVKQITDGMDETEYQVMKKGLMKLYHFLEDLK"
     gene            4105..5082
                     /locus_tag="U1404_000890"
     CDS             4105..5082
                     /locus_tag="U1404_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEM5347859.1"
                     /translation="MRNHAKISQVAHYLPKKIVTNDDLAQRMETSDEWIRSRTGIGQR
                     HIVTGETTSDLASQVARKLLEKSQLDASEIDFIIVATITPDASMPSTAAMVQAAIGAK
                     KAFAYDLVAACSGFVFALSTAEKFLASGVYKRGLVIGAETLSRSVDWSDRSTAVLFGD
                     GAGGVLLEACEQPTFLAEILRTDGGRGASLTAGIDQKETPFSTQSRQQPFIQMEGRAI
                     FEFATRDVTATMAELLEQADMTVDRVDYFLLHQANIRILDKMARKLGVVREKFPANMD
                     KYGNTSAASLPILLSECVESGMLRLDGSQTVLMAGFGGGLTWGTLLLQL"
     gene            5142..5366
                     /locus_tag="U1404_000891"
     CDS             5142..5366
                     /locus_tag="U1404_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM5347860.1"
                     /translation="MAVFEKVQEIIVEELGKDAEEVTLTTTFEDLDADSLDLFQVISE
                     IEDAFDIQIDTEEGLTTVGDLVAYVEEKTK"
     gene            5537..6502
                     /gene="fabK"
                     /locus_tag="U1404_000892"
     CDS             5537..6502
                     /gene="fabK"
                     /locus_tag="U1404_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabK"
                     /protein_id="HEM5347861.1"
                     /translation="MKTKITELLDIKYPIFQGGMAWVADGDLAGAVSNAGGLGIIGGG
                     NAPKEVVKANIDKVKSITDKPFGVNIMLLSPFADDIVDLVIEEGVKVVTTGAGNPGKY
                     MERLHAAGITVIPVVPSVALAKRMEKLGVDAVIAEGMEAGGHIGKLTTMTLVRQVVEA
                     VSIPVIAAGGIADGAGAAAAFMLGAEAVQVGTRFVVATESNAHQAYKEKVLKAKDIDT
                     TVSASIVGHPVRAIKNKLSSAYAAAEKDFLAGKISADAIEELGAGALRNAVVDGDVTN
                     GSVMAGQIAGLVSKEESCEDILKDIYYGAAKVIREEASRWASVGE"
     gene            6504..7424
                     /gene="fabD"
                     /locus_tag="U1404_000893"
     CDS             6504..7424
                     /gene="fabD"
                     /locus_tag="U1404_000893"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEM5347862.1"
                     /translation="MTKIAFLFAGQGSQTVGMARDLYEYYPIVRETFDQASQILGYDI
                     RDLIDKQEDKLHQTRYTQPAILTTSVAIFRLLEEEGIQPDMVAGLSLGEYSALVASGA
                     LAFEDAIALIAKRGEYMETAAPAGTGKMVAVLNTDVNLIEEICSTVTSGIVSPANYNT
                     PAQIVIGGEVAAVDEAVELLKEAGVKRMIPLNVSGPFHTALLRPASEQLAQALEQVEF
                     ADFQVELVGNTEAKVMKKEDIKSLLTRQVMEPVRFYESIATMQEAGVTNFIEIGPGKV
                     LSGFVKKIDKTAHVVAIEDIEGLQIVLNKS"
     gene            7434..8168
                     /gene="fabG"
                     /locus_tag="U1404_000894"
     CDS             7434..8168
                     /gene="fabG"
                     /locus_tag="U1404_000894"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011225529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HEM5347863.1"
                     /translation="MELTNKNVFVTGSSRGIGLAIAHKFASLGANVVLNGRGQLGQDL
                     LDSFADYGVKVLAISGDISSAEDAKRMVAEAIETLGSVDILVNNAGITKDGMALRMTE
                     EDFDTVLKVNLTGTFNMTQAVLKPMTKAREGAIINLSSVSGLIGNAGQANYSASKAGV
                     IGFTKAIAREVAGRNVRVNAIAPGFIQSDMTDVLSDKIKEAMTAQIPMKRFGATEEVA
                     DVAVFLAKQEYLTGQVIAVDGGLTMQ"
     gene            8562..9797
                     /gene="fabF"
                     /locus_tag="U1404_000895"
     CDS             8562..9797
                     /gene="fabF"
                     /locus_tag="U1404_000895"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEM5347864.1"
                     /translation="MTKLNRVVVTGYGLTSPIGNTPEEFWDSLKAGKIGIGKITKFDT
                     SEYSVHNAAELKDFPFDKYFVKKDTNRYDNYSLYALYAAKEAIANAQLDTETVDSDRF
                     GVILSTGIGGILEIEEQVARMNEKGPKRIRPMALPKALPNMAAGNIAMQVGANGVCKC
                     IITACASSNDALGEAFREIKFGFQDVMLAGGAEAAITPFAIGGFQALTAMSTTEDPER
                     ASIPFDKDRNGFVMGEGSAVLVLESLEHAEARGATILAEIVGYGNTCDAYHMTSPHPE
                     GLGAIKAMKLAISEAGLEPADIDYINAHGTSTPANEKGESQAIVSVFGKNTPVSSTKS
                     FTGHLLGAAGAVEAAAVIEAMRHSYAPKTAGTTELSEDIEADVIYGQGRDMEIRHAIS
                     NTFGFGGHNSVIAFKRWEA"
     gene            9798..10274
                     /locus_tag="U1404_000896"
     CDS             9798..10274
                     /locus_tag="U1404_000896"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEM5347865.1"
                     /translation="MNITEIKDLMSQFDQSSLREFSYSNAGETLHFSKNQQATVAPSP
                     AVEAPLAPVTPASPALVPAVEMSEPAPAEAGASPVAEGAVVESPLVGVAYLSPAPDKP
                     AFVAVGDTVKKGQTLMIIEAMKVMNEVPADRDGVVTEILVANQDVVEFGQGLVRIK"
     gene            10271..10693
                     /gene="fabZ"
                     /locus_tag="U1404_000897"
     CDS             10271..10693
                     /gene="fabZ"
                     /locus_tag="U1404_000897"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEM5347866.1"
                     /translation="MIDIVKIKEALPHRYPMLLVDRVLEVSEDEIVALKNVTINEPFF
                     NGHFPDYPVMPGVLIMEALAQTAGVLELSKEENKGKLVFYAGMDKVKFKKQVVPGDQL
                     IMTATFVKRRGTIAVVEAKAEVDGKLAASGVLTFAIGK"
     gene            10990..12363
                     /locus_tag="U1404_000898"
     CDS             10990..12363
                     /locus_tag="U1404_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEM5347867.1"
                     /translation="MFEKILIANRGEIAVRIIRAARELGIATVAVYSEADKEALHTML
                     ADEAVCIGPARSTDSYLNMQAVISAAVVTGAQAIHPGFGFLSENSKFATLCEEVGIKF
                     IGPSGTVMDTMGDKINARAEMIKAQVPVIPGSDGEVLTSQEALAIAEKIGYPVMLKAS
                     AGGGGKGIRKVEKAEDLVPAFESASSEAKAAFGNGAMYMERVVYPARHIEVQILADQH
                     GHVIHLGERDCSLQRNNQKVLEEAPSIAIGQTMRERIGQAAVRAAQSVGYENAGTIEF
                     LLDEAKGEFYFMEMNTRVQVEHPVTEFVTGVDIVKEQIKIAAGQELSVRQEDVRITGH
                     AIECRINAENPAFNFAPSPGKISNLYLPSGGVGLRVDSAVYPGYTIPPYYDSMIAKVI
                     VHGENRFEALMKMQRALYELEIDGVVTNTDFQLDLISDKRVVAGDYDTAYLMEEFLPR
                     YQEDLKK"
     gene            12378..13244
                     /locus_tag="U1404_000899"
     CDS             12378..13244
                     /locus_tag="U1404_000899"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEM5347868.1"
                     /translation="MALFRKKDKYIRINPNRSRIESAPQAKPEVPDELFSKCPACKEI
                     LYKKDLGPEKTCQHCSYNFRITAQERLALTVDDGSFEELFTGIETKNPLDFPNYLEKL
                     AATRQKTGLDEAVLTGKATIGGQPVALGIMDSHFIMASMGTVVGEKITRLFELAIEER
                     LPVVLFTASGGARMQEGIMSLMQMAKISAAVKCHSNAGLFYLTVLTDPTTGGVTASFA
                     MEGDIILAEPQTLVGFAGRRVIESTVRENLPDDFQKAEFLQEHGFVDAIVKRQDLPAT
                     IGRLLRMHGGVR"
     gene            13241..14014
                     /locus_tag="U1404_000900"
     CDS             13241..14014
                     /locus_tag="U1404_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEM5347869.1"
                     /translation="MTSDVARMIRLARDQARLTTLDYATQLFDDFIELHGDRNFRDDG
                     AIVGGIGILAGQPVTVIGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPV
                     VTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD
                     QVWMLENSMYAVLSPEGFASILWKDGSRAMEAAELMKITSYELEKLQVVDKVILENGR
                     ATKEVLADIKENLVSQLAQLQALPLDKLLENRYQRFRKY"
     gene            14078..14551
                     /locus_tag="U1404_000901"
     CDS             14078..14551
                     /locus_tag="U1404_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347870.1"
                     /translation="MLVKADLSNAEELLPIQHRAFAALYKTYQDQYNPAIETMDYFQL
                     RFARPNCSYYKIIEEEHTVGLVRTTVAEDAEQGWLGLIGIDPDHRGKGYGHKAMLELE
                     SLYPTVRRWVLCTVLQESKLVSFYEKLGYKAIKTEPEQEGMDMVYMEKWIGDSDA"
     gene            14544..15176
                     /locus_tag="U1404_000902"
     CDS             14544..15176
                     /locus_tag="U1404_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347871.1"
                     /translation="MLEQCRRYLDYQGVHYCKPEKAGALAGDMIALKNVAQAARKEFQ
                     TLSLVLAEHVSPFVPERVSQWMNQAQICRPHFWTYYRFPSASLTDSALAIRLYGKGTE
                     AGISVEVSFIERKKVETSLLQQNRVLNCSIAAPLYYWVQEGQVFYRLDGTEENRQSLL
                     QAVEAGRIRKVLVKYDVPFRTVASEEELLERLIQGFSLLEPYLKMTHLAK"
     gene            15354..15599
                     /locus_tag="U1404_000903"
     CDS             15354..15599
                     /locus_tag="U1404_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347872.1"
                     /translation="MEKLGQSLKWLGRKIWLLLRIFGLLVLAVLPDLILEGSKSQVTL
                     VIVGLMTLGLLVFFWWRAEKMICQSGTLTFLLGTVWR"
     gene            15620..16012
                     /locus_tag="U1404_000904"
     CDS             15620..16012
                     /locus_tag="U1404_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5347873.1"
                     /translation="MQLTDMLGYYLLELQGVTTTENDASIIEFLKGVPFRLALLTTAF
                     LPAVVEEVIFRGYFFKKLFGSQVLLGIVVSSLVFGSFHGPTDLGSWLIYAGSGIILSL
                     LYYKSRYLIYPIIVHLVNNFIATVFYYI"
BASE COUNT         4527 a         3097 c         3941 g         4462 t
ORIGIN      
        1 tagcttagaa ttgcatcgtc agaaacgttg attctaagct atttttgttt attcaaattt
       61 taattgctac tcaatgaaaa ttaaaatcag actagctcca atggagcttg atactcatca
      121 aatcaagtca acaacgtctg gttttgattt tcgaagagta tgaagaggga actgaccgac
      181 ctagttgtga ttattgctcg ttaaaaaaag cttcatagag tgcgtgcaga gcgcgtttct
      241 tttcttcggt tttgacaacg aacataacag aaacttcact ggctccctgt gaaatcattg
      301 ccaagttgac attttgttta gagagggcag tggtagcggt agctgttaca ccgacatggc
      361 tcttcatatt ttcaccaaca atcatgataa tagataaacc atgttcgatt tcggccttgt
      421 caacttccat tttcgtattg agttgacgaa ggatctcttc ttctttaata ggagtcaatt
      481 cacgctcacg gactacgatg gataaatcgt caataccggt cggcatgtgc tcccagcgga
      541 tattgagatc ttcgagaatt tgcaacacct tgcgaccaaa accaacttcg cggttcatca
      601 agtatttaga caagttaatg ctgacaaaac catcgtctgc agcaataccg acaacaggaa
      661 ctgtttgctc ggtatgtttg tgtacaattc gggtaccagg gtgagttggg ttattggtgt
      721 ttttgataac caatggaatc cgcccgcgat aggcaggaag gagggcttca tcgtggagga
      781 cggagaaacc tgcataagct aattctcgca tttcacgata ggtcaattct ttgattgaat
      841 gtggattttt aatgatacca ggatgggcag caaaaatacc atcgacatct gtaaagtttt
      901 catagaggtc agccttgact ccggcagcaa tgatggaacc tgtaatatcc gatccacctc
      961 gtgagaaggt acaaatctgg ttatcaacag ttacaccgaa gaatcctggg ataatgagta
     1021 cttcatctgt atcacgaagc tcttcgattt tgtcataact tgaaggcaaa atgcgagcat
     1081 ttcctggttc ggagctgaca ataataccag cttttttagg atggacatag cgtgcgggca
     1141 atcctctgtg ggtaaaatat tcggcaatca atttggcatt attatcttca ccagctgcta
     1201 agaatgcgtc gtaaaggaat tcgttatcat caattggtag gctggccaaa gagatgatgc
     1261 tgtctgcgat tttcttcatg ctgttagctg tgaaaccaag ttcgtcaacc attgcctgat
     1321 aacggttgat gatccattct tgactggcag tcacatcttt tccgttaaca tattctttat
     1381 aatatttaat caatgcatca gtaactttag tatcctcggc attgcgtttt ccaggtgcag
     1441 acaccacaac aaagcgacgt tctgaatcag attgaacaat attgaaaact ttttctaact
     1501 gttcagctga agcaagtgag cttcccccaa atttaataac tttcattctc atctccttgg
     1561 atattttttt ctattatagc agaatgatat gaaattgtca gtatgttcag acaaatcttg
     1621 ccaagaattt tatcgaaaaa cgaacaagag acaagtatga aaatttcaga aaaacatttt
     1681 tttctttcaa ctgtgttaca attaaagtaa taggaggcga gtatggtaaa agcaattatt
     1741 ttcgacatgg atggtgtact ttttgataca gaaacattct attttcaacg tcgagcggat
     1801 tttttagcga caaaaggttt atcggttgat catttggatc catctatatt tgtcggtgga
     1861 agggctagtc aaatttggca acggatttta ggggatgatt atgataactg ggatgtccct
     1921 gccttggaag aggaatatcg tgtatataaa gaaaagcgac caaccccgta tgcagagagg
     1981 atttttcctg aagttaaagc ggtcttggag agactaacta tccaaggtat tcctgtagtt
     2041 ttggcttcaa ataccgaccg ttcagaaatc gaacgtgctc tactagatgc tggtatacgc
     2101 tttcacttta gtcatgtttt ctcagcgatg gattgtgagg ccccaaaacc agatcccaca
     2161 gtttatatga aagcagctag tgcaacagga gtagctaaat cggatatttt agtatttgaa
     2221 gatagtgcga aggggattga agcggctaaa aaagcaggtt tgacagtttg ggctattcga
     2281 gaccagcatt atggaattga tcagtcgaaa gcagacaaat tggtagacaa tcttgaagag
     2341 gcctttgact tattgcgatt ttaagaaatg ttatatttta gtccaagtat tagttctcgg
     2401 tgaaaaaatg gtatttctag ctcagaatcc agttagattt tccaaaagta ttaacgtgaa
     2461 aaaatgaaag ttgtaaatta aacttagagc ctatatttac agttcagact tgcatattga
     2521 ggttgttttt tcaaaataca gtcagtattt cccgcaaaaa ctactttgat gagtgaaaaa
     2581 gccaaggcgc tttgcgtgtg aatataggtt cttagacacg ttattttcta gcatatctaa
     2641 attttatatt gcgatgatag cccccatctt tttcggacgt cacactttac ttgctagaaa
     2701 aaaagtgaca attataaaaa ctgtgttaca atggaaaaca agaatttgaa gtttgatatt
     2761 caaatctttt aattatcaaa ctattttgaa aggagcaaga gaatggccta ccaaacaatt
     2821 cgttatgaag taattgattc cgtagcgatt ctaactttaa acagaccgga agtggcaaat
     2881 ggttttaata ttcctatgtg tgaagaaatc ttagaagcaa tccgccttgc agaaggggat
     2941 gcctccgtca aaattttaca aattcaagca cagggctcca ttttctccgt gggtggagat
     3001 ttagttgaga tgaagcgtgc agttgatgat gatgatattg cttctttggt aaaaatagca
     3061 gagctggtga atgatatttc gtttgcgatg aagaaattgt ctaaagtagt cattatggtg
     3121 acagatgggg cagtggctgg agccgcggct aatatggcag tggcagctga ttttgttatt
     3181 gcctccagca agacaaaatt catccaagcc tttgtaggtg ttggacttgc gccggatgcg
     3241 ggggggctct ttctactgag tcgtgctatt ggggctaatc gtgctagtca cttggcgatg
     3301 acaggagagg gcttatcagc ggataaggct ttagaatatg ggattgttta taaattggca
     3361 gagccagaaa aactagaaaa gacggttgcc caggtcataa aaaaactctt gcgaggctca
     3421 gtaaactctt atgcagcaat caaacaactg acatgggaaa gtcaatttaa agactgggag
     3481 tcttatcgcc gattggagct ggatttgcaa gaaacattgg cctataaaga ggattttaaa
     3541 gagggagttc gagcgcatgc agaacgacgt agaccagtgt ttacgggaga ttaattttta
     3601 aattagtaaa aaaagtttga caatcaaagt tttatggttt atactttgac tatcaaagta
     3661 aaggaggcct gttttggaag atccaaaagt aaatgaatat ctaacggcca tttttaacaa
     3721 tgtgttggtg attgaagaaa caagtctgcg tggtagccga ttcaatgata tttcaattaa
     3781 ggaaatgcac acgattgatg tgataggaag tattgatgga gctactccga gtgatgttgc
     3841 tcggactttg atggtaacct taggtactgt tacaactagc ttgaacaatt tggaaagaaa
     3901 aggatatgtt gagcgtattc gttcgaccaa agatcggcga gttgttcatc tctatctgac
     3961 caaaaaaggt cgactggtct atcgtttgca tcaacgattt cacaatgaaa tggtgaaaca
     4021 gattacagat ggtatggatg aaacagagta tcaggtaatg aagaaaggac tcatgaaact
     4081 ctatcacttc ttggaggatt tgaaatgaga aaccatgcta aaatcagtca ggtggcccac
     4141 tatcttccga agaagattgt gaccaatgat gatttggctc aacgaatgga gaccagtgat
     4201 gagtggattc gtagccgtac aggtatcggt caacgacaca ttgttactgg agagacgacg
     4261 agtgatttgg ctagtcaagt ggctagaaaa ttactggaaa agtctcagct agatgctagt
     4321 gaaattgatt tcatcatcgt agcaacgatt actccagatg cttcaatgcc atctacggca
     4381 gctatggtcc aagcagcaat tggtgcgaaa aaggctttcg cctatgatct tgttgcagct
     4441 tgttcaggat ttgtttttgc gctatcaaca gcggaaaaat tccttgcttc aggagtctat
     4501 aagagaggac ttgtcattgg tgcagagacc ctatctaggt ctgtcgactg gtcggatcga
     4561 tcaacggctg ttttatttgg agatggtgct ggaggagttt tgctggaagc gtgcgaacaa
     4621 ccgacctttt tagcagaaat cttgcgaacg gatggcggtc gaggtgcgag tctgacagca
     4681 gggatagacc agaaagagac gccattctcg acacaaagcc gtcaacaacc ctttatccaa
     4741 atggagggca gagctatatt tgaatttgcg acgagggatg ttacggcaac catggcagag
     4801 ctgctagaac aagctgatat gactgtggat cgtgttgatt atttcttgct ccatcaagcc
     4861 aatatacgta tcctagataa gatggctcgt aaattgggag tggtgcgtga aaaatttcca
     4921 gcaaatatgg ataaatatgg caataccagc gcagcaagtc ttcctattct cttatcagaa
     4981 tgtgtagaga gcggaatgtt acgattggat ggaagccaga ctgttctcat ggctggtttc
     5041 ggtggaggcc tcacatgggg aactctacta ttacaacttt agttaattcc ttgccctagg
     5101 caagattaaa atattttatt ttccaaaagg agacacatat catggcagta tttgaaaaag
     5161 tacaggaaat catcgttgaa gaattgggta aggatgctga agaagtaacc cttacaacaa
     5221 cctttgaaga tttggacgca gattcattgg atcttttcca agttatctct gaaatcgaag
     5281 atgcattcga catccaaatc gacactgaag aaggtttgac tactgtaggt gatttggttg
     5341 cctacgttga agaaaaaaca aaataatgac tgttaaggaa agtgctattt agcatttttc
     5401 ttaaattaaa tactttgata atcaaaacat tgaaatatca aactattttt tgagtgaggg
     5461 ggcaaccctt cacttgttta cctaatgatt tgatattcaa atgattaggt aagcaagaaa
     5521 aaaagatgag ggaattatga agacgaaaat aacagaattg ctcgatatta agtatccaat
     5581 ttttcaaggt ggtatggctt gggtagctga tggagatttg gctggtgccg tatctaatgc
     5641 aggtggtcta ggaatcatcg gtggaggaaa tgctcccaaa gaggtagtca aggcaaatat
     5701 tgacaaggtt aaatctatca cggacaaacc tttcggtgtc aatatcatgc tgttgtctcc
     5761 ttttgcagat gacattgttg acttggtcat cgaagaaggt gtgaaagttg tcactacagg
     5821 agcaggaaat ccagggaagt atatggagcg tctccatgct gcagggatta cagttattcc
     5881 tgttgtaccg agtgtagccc ttgctaaacg catggaaaaa ttaggggtag atgctgttat
     5941 tgctgaaggt atggaagccg gaggccatat tggtaaattg accaccatga ccttggttcg
     6001 tcaggttgtt gaagccgtat ctattcctgt tattgctgct ggaggtattg cagatggtgc
     6061 aggtgctgcg gcagccttta tgttgggagc agaagcggtg caagttggaa ctcgttttgt
     6121 agtagctaca gagtccaatg cccatcaggc ttataaggaa aaagttttaa aagctaagga
     6181 tattgataca actgtatctg cttctattgt tggacatcct gtgagagcca tcaagaataa
     6241 gttgtcatct gcttatgcag ctgcagagaa agatttcttg gcaggtaaaa tttcggcaga
     6301 tgctattgaa gaacttggtg cgggagcact ccgcaatgca gttgttgatg gtgatgtaac
     6361 aaatggctcc gtgatggcag gtcaaattgc tggtctggtt tctaaagaag aatcttgtga
     6421 agatattttg aaagacatct attatggagc agccaaagtg attagagaag aggcaagccg
     6481 ttgggcttcg gttggagaat aggatgacaa agatagcttt tctttttgca ggtcaagggt
     6541 ctcagacagt ggggatggct cgcgaccttt acgaatatta cccgatagtt agagaaacgt
     6601 ttgaccaggc tagtcagatt ctggggtatg acattcgcga cctaattgac aaacaagagg
     6661 ataaattaca tcagactcgc tatacccaac cggcaatttt gacaacttct gtggctattt
     6721 ttcgactgct ggaagaagag ggaatacaac ccgatatggt agctggtcta tccttgggag
     6781 aatattcagc tctggtagca tcgggagctt tggcctttga agatgcgatt gccctgattg
     6841 ctaagcgtgg tgaatatatg gaaacggctg cgccagcggg gactggtaag atggttgcgg
     6901 ttctcaacac agatgtcaac ttgattgaag aaatctgttc gactgttacc tctgggattg
     6961 tttccccagc caactacaac acaccagccc aaatcgtcat cggaggcgag gtggctgcag
     7021 tggatgaggc ggttgaattg ctaaaggaag ctggtgtcaa acggatgatt ccgctcaatg
     7081 tatctggccc ctttcacacg gctctcttgc gtccagcttc ggagcaattg gctcaggcct
     7141 tggagcaggt ggaatttgcg gacttccaag tagagttggt cggtaatacg gaagccaagg
     7201 ttatgaaaaa agaggacatc aagtccctct tgacccgtca agtgatggaa ccggttcgtt
     7261 tctatgagtc aatcgcaacc atgcaggaag ctggcgtgac taactttatt gaaatcggtc
     7321 caggtaaagt cttatcaggt tttgtcaaga aaatcgataa gaccgcgcat gttgtagcaa
     7381 ttgaagacat agaggggcta caaatagtat tgaataaatc atgaggagga atcatggaat
     7441 taacaaataa aaatgttttt gtaacaggtt caagccgagg aattggcttg gccattgccc
     7501 ataagtttgc cagtcttggt gccaatgtgg tgctgaacgg tcgtggtcag ctaggccagg
     7561 acttgctgga tagctttgca gattacggtg tgaaagtcct agctatttca ggagatattt
     7621 caagcgcgga agatgccaaa cgaatggtgg cagaagccat cgaaacactc ggtagcgtcg
     7681 atattttggt caacaatgca gggattacca aggatggaat ggctcttcgt atgacagaag
     7741 aggattttga tacggttctg aaggtaaatc ttactggaac ttttaatatg acgcaggctg
     7801 ttttgaaacc aatgacaaag gctcgtgagg gtgctattat caatctatca agcgtatctg
     7861 gcttgattgg aaatgctgga caggccaact attctgcttc taaggcaggt gtgattggat
     7921 ttactaaagc cattgcccgt gaggttgctg ggcgaaatgt tcgtgtcaat gcgattgcgc
     7981 cgggctttat ccagtctgat atgacagatg ttttatctga caagattaaa gaagctatga
     8041 ctgcacaaat tccgatgaaa cgctttggtg cgacagaaga agtagcggat gtagcagtgt
     8101 ttcttgccaa gcaagaatat ctaactggac aggtgattgc ggttgacggc ggcttgacca
     8161 tgcagtaatc cagtcttcca gtttatcttt tattacttcg acgagtgagg aaactacgtt
     8221 tccagatttc cagctgggag tgggaaagaa ctcgaccaag ataaaaagag ttcgtcttcc
     8281 cacccccgca cagttgatta ggccagattt ggagtgcaaa acacgaacaa atctgccaat
     8341 caaccactgc gctgagatgt tgacacgaac tctgagtagt ggtcctgggc tttttgccca
     8401 gcctcacgat ttccaacctt caatagtcca ctggattatt gaagctgtca acaacttgtt
     8461 gaaatgaact ttttcgtagt actaaaagca aactgaaaga ctgcaataac gcactgtaaa
     8521 ttcaatgttg ttttgtgtgt tattttaaga gaggtttgaa aatgacaaaa ttaaatcgtg
     8581 tagtagtaac aggctacggt ctgacatctc caatcggaaa tacgccagag gagttctggg
     8641 atagtttgaa ggctgggaaa attgggatcg gaaagattac caagtttgat accagtgaat
     8701 attcggtcca taatgccgcg gaattaaaag attttccttt tgacaaatat ttcgttaaaa
     8761 aggatacaaa tcgctacgat aattactcgc tctatgcact ctatgcagct aaagaagcga
     8821 ttgctaatgc acagctggat acagagacag tggatagtga ccgttttggc gttatcttat
     8881 caacaggtat cggtggtatc ttggaaattg aagagcaagt ggctcgtatg aatgaaaaag
     8941 gtccaaaacg cattcgtccc atggctcttc caaaggccct gccaaatatg gcggctggaa
     9001 atattgctat gcaggtcggt gcaaatggcg tctgtaagtg catcatcaca gcctgcgctt
     9061 catcaaatga tgctttaggg gaagccttcc gtgaaatcaa gtttggtttc caagatgtga
     9121 tgctggctgg cggagcagag gcagccatta ctccctttgc tatcggtggt ttccaggctt
     9181 tgacagctat gtcgactact gaggatccag aacgtgcgtc tattccattt gacaaggacc
     9241 gcaatggttt tgtcatggga gagggttccg cggttttagt attggaaagt ttggaacacg
     9301 cagaggcgcg tggagcgacg attttggctg aaatcgttgg ttatggaaat acctgtgatg
     9361 cttaccacat gacttctcca catccagaag gtctgggtgc tattaaggcc atgaagttgg
     9421 ccatttcaga agcaggtttg gagccagctg atattgacta catcaatgcc catgggactt
     9481 cgacaccggc taatgaaaaa ggggaaagtc aagctatcgt atctgtcttc ggcaagaaca
     9541 cgccagtttc ttctaccaag tccttcactg gtcacttgtt gggtgcagcg ggtgccgttg
     9601 aagcggcagc tgtcattgag gctatgcgtc attcttacgc accaaagaca gctggtacga
     9661 cagaattatc tgaagatatt gaagcggatg tcatttatgg acaggggcgt gatatggaaa
     9721 tccgccatgc catttcaaat acatttggct ttggtgggca taattcagtc atcgctttca
     9781 aacgttggga ggcctaagtg aatattacag aaattaagga cctgatgagt cagtttgacc
     9841 agtcaagttt gcgagaattt tcgtatagca atgctgggga gaccttgcat ttcagtaaaa
     9901 accagcaggc gacagtggct ccgagtccag cggtagaagc tccgcttgcc ccagtaactc
     9961 ctgcaagccc agcccttgtg ccagcagttg aaatgagtga gccagctcca gcagaagcag
    10021 gtgccagccc cgtggcagaa ggtgcggtag tggaaagccc cttggtcggc gtggcttatt
    10081 tgtccccagc ccctgacaag ccagcatttg tagcggtcgg cgatacggtc aaaaaaggcc
    10141 agaccctcat gattatcgaa gctatgaaag ttatgaacga agtaccagct gaccgtgacg
    10201 gcgtagttac agaaattttg gtggccaacc aagatgttgt agaatttgga caaggattgg
    10261 tacgcatcaa atgattgata ttgtaaaaat taaagaggct cttcctcatc gctaccctat
    10321 gctcttggtc gatcgtgtcc ttgaagtatc ggaagatgag attgtcgccc tcaaaaatgt
    10381 gaccattaac gagcccttct tcaacgggca tttcccagac tatcctgtta tgccaggtgt
    10441 tctcatcatg gaggccttgg cacaaaccgc aggtgtcttg gagttgtcta aggaagaaaa
    10501 caagggcaag ctggtttttt atgccggcat ggacaaggtc aaatttaaga agcaagttgt
    10561 acctggtgac cagttgatca tgaccgctac atttgtcaaa cgccgtggaa ccattgcggt
    10621 cgttgaagca aaggcagagg tggatggaaa actggctgcg tcgggggtac taacctttgc
    10681 cattggaaaa taaatcagtt ctccatttta tcttttattg cgtcgacgaa cgaggaaact
    10741 tcgtttcctt atttccaact tcaaataatt tcatcattat ttgaactcgt tttgccgtac
    10801 ccaagtactg tctacaacaa ttgatacgaa ttttattcgt ctcatttcca acctccaaag
    10861 gtttcccaaa cctttggagc aagcactaaa agtaaaatga agaactgcta ttgataacca
    10921 ttatttaata ttctcatctt gagattgtta taacaattat tctatgttaa aaaggagata
    10981 ggattcatca tgtttgagaa gattttgatt gccaatcgtg gtgagattgc ggtgcggatc
    11041 attcgtgcgg ccagggaatt agggattgcg acggtggctg tctattcaga ggcggacaag
    11101 gaagctctcc acaccatgtt ggcagatgag gctgtctgta tcggcccggc ccgttcgaca
    11161 gactcctatc tcaatatgca ggctgttatc tcggcggctg ttgtgacagg tgcccaggct
    11221 attcatcctg gctttggatt tttgagtgaa aactctaaat tcgccaccct ctgtgaagag
    11281 gtcggtatca agtttatcgg accttctggg acggtcatgg ataccatggg cgataaaatc
    11341 aatgctcggg cagagatgat taaggctcaa gttcctgtca ttcctggatc agacggcgaa
    11401 gttttgacca gccaagaagc tcttgcaatt gctgaaaaga ttggttaccc tgtcatgctc
    11461 aaagcatcgg caggaggtgg cggtaagggg attcgtaagg tggaaaaagc tgaagaccta
    11521 gtgcctgcct ttgaatcagc ttccagcgaa gccaaggcag cctttggcaa cggagccatg
    11581 tatatggagc gtgtcgtcta tccagcccgc cacatcgaag tacagatttt ggcggaccag
    11641 cacggtcatg tcattcatct gggagaacgg gattgttccc ttcaacgcaa caatcaaaag
    11701 gtcttggaag aagctccgtc gattgctatc ggccagacca tgcgggaacg tatcggtcaa
    11761 gcagcagtgc gggctgccca gtcagttggt tatgaaaatg cggggaccat tgagtttctc
    11821 ttggatgaag ccaagggcga attttacttc atggaaatga acacacgggt gcaggtagaa
    11881 catcctgtta ccgaatttgt cactggtgtg gatattgtca aggagcaaat caagattgcg
    11941 gctggtcagg aactcagtgt ccgccaagaa gatgtgcgga ttacaggtca tgccattgaa
    12001 tgccgcatca atgctgaaaa tccagccttc aattttgccc caagtccagg taagatttcc
    12061 aatctctacc taccaagcgg tggcgttggt ctacgtgtag attcagctgt ttacccaggc
    12121 tacaccattc cgccttacta tgattccatg attgccaagg tcatcgtgca tggggaaaat
    12181 cgctttgaag ccctgatgaa gatgcaacgg gccctctatg aattggaaat tgacggagtg
    12241 gtgaccaata ccgacttcca gctggacttg atttccgaca agcgagtggt ggctggtgat
    12301 tatgacactg cctacctcat ggaagaattt ttaccccgct atcaagaaga tctaaaaaag
    12361 taaactagga gaatgctatg gctttgtttc gcaaaaagga caaatatatt cgcatcaatc
    12421 ccaatcgttc gcggatagag tcagcacctc aagcaaagcc agaggtgcca gatgaactct
    12481 tttcgaaatg tcctgcttgt aaggaaatcc tctacaagaa ggacttggga ccagagaaaa
    12541 cctgtcaaca ctgttcctat aattttcgga ttacggccca ggaacgcttg gctttgacag
    12601 tggatgacgg ttcgtttgag gaattgttta cagggattga aaccaaaaat cccttggact
    12661 tccccaatta tttagagaaa ttagcagcca cccgtcaaaa aacaggcttg gatgaagctg
    12721 ttttgacagg aaaggcgaca atcggcggtc aaccagttgc ccttggcatc atggattcgc
    12781 actttatcat ggcttctatg ggcacggtgg tcggtgagaa aattacccgc ctctttgagt
    12841 tggcgattga agagcgtttg ccagttgtcc tctttaccgc atctggtggt gctcgcatgc
    12901 aggaaggcat tatgagtctg atgcaaatgg ccaagatttc tgcagcagtg aaatgccatt
    12961 ccaatgctgg cctcttttac ctgacggtct tgacagaccc gacaacagga ggtgttacgg
    13021 ctagttttgc catggaaggc gatattatcc tggctgagcc gcagaccttg gttggttttg
    13081 caggacgacg ggttattgag tcaactgtgc gtgaaaatct gcctgatgat ttccagaagg
    13141 ctgaattttt acaagaacac ggctttgtcg atgccattgt caaacgccag gacttgccag
    13201 cgaccattgg tcgcttgttg agaatgcatg gaggtgtcag atgaccagtg atgtagcacg
    13261 tatgatccgt ttggcacgtg accaagctcg cctgacgacc ttggactatg ccacacagct
    13321 ctttgatgac tttatcgaat tgcacggcga tcgcaatttc cgtgatgatg gagcaattgt
    13381 cggtggaatt ggcattttag caggtcagcc tgtgacagtt atcggtatcc aaaaagggaa
    13441 aaatcttcag gataacctca aacgcaactt tggtcagccc cacccagaag gctaccgcaa
    13501 ggcccttcgc ctcatgaaac aggcggagaa gttcgggcgt cccgttgtca cctttatcaa
    13561 tactgctgga gcctatcccg gtgtcggtgc cgaggagcgt ggacagggtg aggccattgc
    13621 ccgcaacctc atggagatga gtgacctcaa ggtgcctatt atcgctatta tcatcggcga
    13681 gggcggctct ggtggagctc tggctctagc ggtggcagat caggtctgga tgctggaaaa
    13741 ctccatgtac gccgtcctca gccccgaagg gttcgcgtct atcctctgga aagacggcag
    13801 tcgggccatg gaggcggcag aactcatgaa gattacctcc tatgagttgg agaagctcca
    13861 agtggtcgat aaagttattt tggaaaatgg cagagcgacc aaggaagtct tggctgacat
    13921 caaggaaaac ctggtcagtc agttggctca actacaagcc ttgccacttg ataaattgct
    13981 cgaaaaccgc tatcaacgct ttagaaaata ctaggaagac ctagtatttt tttgctagat
    14041 ttgatacaat ggataaaatc atttcaggag gttttccatg ttagtaaaag cagatctatc
    14101 aaacgcagaa gaattgctac ctattcagca ccgagcattt gcggctttat ataaaaccta
    14161 tcaggaccag tacaaccctg ccattgaaac tatggactat ttccaattac gctttgcacg
    14221 accaaattgt agctattaca agattatcga ggaagagcac acagtcggac tagtacggac
    14281 aacggtcgct gaagacgctg aacagggctg gctaggcttg attggtattg atccagacca
    14341 cagaggaaaa ggctatggtc acaaggctat gctcgaattg gaaagccttt atccgacagt
    14401 tagacgctgg gttctctgca cggttttgca ggagtctaaa ttagtttctt tctacgaaaa
    14461 gctcggctac aaggccatca aaacagagcc tgaacaagaa ggcatggata tggtctatat
    14521 ggagaagtgg ataggagatt cagatgcttg aacagtgtcg cagatacctg gattatcaag
    14581 gagttcatta ttgcaagcct gaaaaagcag gagctttggc aggcgatatg atagccttaa
    14641 aaaatgtagc acaggcagca cgcaaggagt ttcagacatt aagtttagtc ttagctgagc
    14701 acgtcagtcc ctttgtgcct gagagggtca gtcaatggat gaatcaagcc caaatttgca
    14761 gaccacattt ttggacctat taccgttttc cctctgctag tctaacggac tcggctcttg
    14821 ctattcgttt gtatggtaag ggaactgaag cggggatttc agtagaagtc agttttattg
    14881 aacgaaagaa agtggagacc tctctgcttc agcaaaatcg tgttctgaac tgctcgattg
    14941 cggcaccgct ttattattgg gtgcaagagg gacaggtatt ttatcgcctg gatggaacgg
    15001 aggagaatag acagagccta ttacaagccg ttgaagcagg acggattcgt aaagtattgg
    15061 tcaagtatga tgtaccgttt agaaccgttg cctccgagga ggaactgctg gaacgcttga
    15121 ttcagggctt ttctctacta gagccctact tgaagatgac acacctcgct aaataatcag
    15181 tggggtgatg gcaacaaaca tcgtaagggt atttgttttt tagtgtatat tgacaaattc
    15241 attgaatttt tgtaaaactg tatcgcaaca acagaacagt ttgattgaca ttacgtgaaa
    15301 tcctataata gattgaaggc actctatatg atgaagcgga agaggagaag agtatggaga
    15361 aactaggtca aagtttgaaa tggcttggtc ggaagatttg gctattatta aggatttttg
    15421 gtctcttagt gcttgctgtc cttccagatc tgattttgga agggtccaaa tcgcaagtca
    15481 ccttggtaat agttgggctg atgacgcttg gacttttggt ctttttctgg tggcgggctg
    15541 aaaaaatgat ctgtcagtct gggaccctaa cattcttact tgggacggtc tggcgatagt
    15601 tatattagcc tttgctatca tgcagttgac ggatatgctt ggttattatt tgttggaatt
    15661 gcagggtgtt accacaacag aaaacgatgc ttcgattata gaatttttga agggagttcc
    15721 ttttagactg gcactcttga caacagcatt tttgccagca gttgtagaag aagtcatatt
    15781 tcgaggctac ttctttaaga aattatttgg atcacaggtt ttgttaggaa tagttgtttc
    15841 aagcctcgtt tttggctcct ttcatggtcc aacagactta ggctcttggt tgatttatgc
    15901 tggcagtggt attattttgt ctctcctcta ttacaagagt agatacttaa tctatccaat
    15961 aatcgtacac ttggtgaaca atttcattgc aacagttttt tactatatat aagaaaagac
    16021 ggttcca
//
LOCUS       DASGCC010000042        15844 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.042, whole genome shotgun sequence.
ACCESSION   DASGCC010000042 DASGCC010000000
VERSION     DASGCC010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15844
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.042"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            70..1086
                     /locus_tag="U1404_000905"
     CDS             70..1086
                     /locus_tag="U1404_000905"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM5347874.1"
                     /translation="MTKQTIAILGPGSWGTALGQVLNDNGHTVRIWGNVPEQIDEINK
                     EHTNKRYFKDVILDENIKGCKDLTEALDGVDAILFVVPTKVTRLVAKQVAQALKHKVV
                     VMHASKGLEPDSHKRLSEVLEEEIPAELRSEIVVVSGPSHAEETIVRDLTLISAASKD
                     LETASYVQNLFSNHYFRLYTNNDVIGVETAGALKNIIAVGAGALHGLGYGDNAKAAII
                     ARGLTEITRLGVAMGANPLTYSGLSGVGDLIVTGTSVHSRNWRAGDQLGRGEKLEDVE
                     RNMGMVIEGISTTKAAYELAQELDVYMPITQAIYKVIYQGAGIEDAIKEIMTGEFRHE
                     NEWH"
     gene            1132..2031
                     /gene="galU"
                     /locus_tag="U1404_000906"
     CDS             1132..2031
                     /gene="galU"
                     /locus_tag="U1404_000906"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEM5347875.1"
                     /translation="MKKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEE
                     ALRSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNDLLKLVDETTGIRLHFIR
                     QSHPRGLGDAVLQAKAFVGNEPFVVMLGDDLMDITDTKAVPLTKQLMNDYEKTHASTI
                     AVMPVPHEEVSAYGVIAPQGEGVNGLYSVETFVEKPKPEDAPSDLAIIGRYLLTPEIF
                     EILENQKPGAGNEIQLTDAIDTLNKTQRVFAREFKGNRYDVGDKFGFMKTSIDYALQH
                     PQVKDDLKQYLIDLGKKLDTKKN"
     gene            complement(2050..2727)
                     /locus_tag="U1404_000907"
     CDS             complement(2050..2727)
                     /locus_tag="U1404_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM5347876.1"
                     /translation="MKNFFDKRYPVTNALLAVTALVFLLIQIFRFGQTTTAYTIFEFG
                     GMYGQVVRYDPTQLWRLISPIFVHIGWEHFIFNSITLLGLGYQLEGLFGSRRFFLLYL
                     LSGIMGNLFVLFFTPDVVGAGASTSLFGLFAAMALLRKFSRSPYLQVLGQRYMVLLGL
                     NLVLGLFNPTISMAGHIGGAIGGCLVVIFLPPLVEKDLFTGKQIFFSFIGYMSLIVFL
                     LGIFYLI"
     gene            complement(2711..3253)
                     /locus_tag="U1404_000908"
     CDS             complement(2711..3253)
                     /locus_tag="U1404_000908"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEM5347877.1"
                     /translation="MDKKEIRQEVLQRLKALTSSQRARWSQQLTERLLSSDTYKCSKS
                     LGTYLSMPHEFDTSYLIEQAQKDGKQIFIPKTYSQGRMDFVEYNPDDLMKSRFGVWEP
                     GTYSQPVDKSVVKLIHVPGLAWNQAGFRVGYGGGFYDRYLADYQGETVSTLADFQVYD
                     FEPDVFDIPVKELLIFEELF"
     gene            complement(3295..4422)
                     /locus_tag="U1404_000909"
     CDS             complement(3295..4422)
                     /locus_tag="U1404_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HEM5347878.1"
                     /translation="MLDLIATRRALHQIPELGMEEFKTHAFLMETIENLLEDCSFAQV
                     RTWKTGILVYLTGSAPEKTIGWRADIDGLPIVEETELGFKSLHPDRMHACGHDFHMTI
                     ALGLLEKMAEQQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLK
                     VGQMATNRATLFAGTCEVKIRFTGKGGHAAFPHTANDALVAASYFVTQVQSVVSRNVD
                     PIEGAVVTFGSMHAGTTNNVIAETAFLHGTIRALTQNMSLLVQKRVREVAEGIALSFG
                     VDLEIELNPSGYLPVENNPQLADELMTYFDGVDGVEMIDCPPAMTGEDFGYLLNKVPG
                     VMFWLGVDTPYPLHNPRLSPKEEVLPFAVDKLSDFLKMKAN"
     gene            complement(4432..5130)
                     /gene="dapD"
                     /locus_tag="U1404_000910"
     CDS             complement(4432..5130)
                     /gene="dapD"
                     /locus_tag="U1404_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HEM5347879.1"
                     /translation="MTAQKMTAQEIIAFIGNAVKKTTVKVTFEGELAGPVPAEVTKLG
                     NVLFGDWKDVEPLLTNLTENVDYVVEQDGRNSAVPLLDKRNINARIEPGAIIRDQVTI
                     GDNAVIMMGAVINIGAEIGPGTMIDMGAILGGRATVGKNSHIGAGAVLAGVIEPASAE
                     PVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARIIKEIDAQ
                     TQQKTALEEALRTL"
     gene            complement(5287..5820)
                     /locus_tag="U1404_000911"
     CDS             complement(5287..5820)
                     /locus_tag="U1404_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347880.1"
                     /translation="MKKKWLLIFSALLTVTSLVACSNSKEETTSKSSSTEQTSTTKSS
                     TKESTSESSTVTLKESTVTYLADAEIDAIQTIGEYKTSLNSLMDSYVADFDGLIVQLP
                     EEAQTTLKPYREQIVTMLEQQKSALDSQFATLGDDSTVIPEEARATVLDSLKTVRVQL
                     KQTMTVVHEQAQTLLNE"
     gene            complement(6135..6863)
                     /locus_tag="U1404_000912"
     CDS             complement(6135..6863)
                     /locus_tag="U1404_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEM5347881.1"
                     /translation="MKKDFFVIGDVHGKFELLLDILKKWNEERQQLIFLGDLIDRGEN
                     SKACLELVWQLVREKDAICLTGNHERMFLAWLRDPLERYDHYRRNGGDTTINSLLGRP
                     LDAPVDGLVDANAVMEQYEKLIDFVKSCPYHLETEGYIFVHAGVDLTLPDWRKTSNHD
                     KVWLRTPFHEAENTTGKMIVFGHTPVYNLYQTKLRISQIWTSSDGKMGIDGGAVYGGV
                     LHGLVLNQQGLVRDYAVGCMESTQ"
     gene            complement(6929..8278)
                     /locus_tag="U1404_000913"
     CDS             complement(6929..8278)
                     /locus_tag="U1404_000913"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM5347882.1"
                     /translation="MTHITFDYSKVLGQFVGAQEVEYMQPQVTLADQMLRQGTGPGSD
                     FIGWLDLPENYDKEEFARIKEAAAKIQNESEVLVVIGIGGSYLGAKAAIDFLSNAFVN
                     LQTREERKAPQILYAGNSISSSYLADLVDYVADKDFSVNVISKSGTTTEPAIAFRVFK
                     ELLVKKYGQEEANKRIYATTDKAKGAVKVEADANGWETFVVPDDVGGRFSVLTAVGLL
                     PIAAAGADIDALMEGANAARTTFTSDKIAENQAYQYAAVRNILYRKGYVTEILANYEP
                     SLQYFSEWWKQLAGESEGKDQKGINPTSANFSTDLHSLGQFIQEGNRNIFETVVRVDK
                     PRKNILIPDMAEDLDGLGYLQGKDVDFVNKKATDGVLLAHTDGGVPNMFVTLPQQDEF
                     TLGYTFYFFELAIAISGYLNAINPFDQPGVEAYKKNMFALLGKPGFEELGAELNARL"
     gene            complement(8360..8902)
                     /locus_tag="U1404_000914"
     CDS             complement(8360..8902)
                     /locus_tag="U1404_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347883.1"
                     /translation="MFLFAFPGMGKTTLAKKYTDVVDLEMSDIKYDNSSVRHLTKEER
                     KSTKRTLKDKGYKTIYVNKAYTLHRQGKTVLVALNFLMRMLLAMSIRGGVPFHIYIPH
                     PSLKEEYRQRYISRGNNDRFIFEVMFIWYPALIPLYLLSKILPKWITVTQSGETLEDY
                     YKRENFVRFSQKLRFIQHIS"
     gene            complement(9042..9131)
                     /gene="ffs"
                     /locus_tag="U1404_000915"
     ncRNA           complement(9042..9131)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="U1404_000915"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(9174..9695)
                     /gene="tadA"
                     /locus_tag="U1404_000916"
     CDS             complement(9174..9695)
                     /gene="tadA"
                     /locus_tag="U1404_000916"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEM5347884.1"
                     /translation="MNYTHEEKEYFMTQALQEARKSLEKDEIPIGCVIVKDGQIIGRG
                     HNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPCVMCSGAIGLARIPQV
                     IYGATNKKFGAAGSLYDILTDERLNHRVKVETGILEAECANIMQDFFRQRRERQKAAK
                     LIMKTQEEATSDS"
     gene            complement(9975..11945)
                     /gene="tkt"
                     /locus_tag="U1404_000917"
     CDS             complement(9975..11945)
                     /gene="tkt"
                     /locus_tag="U1404_000917"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM5347885.1"
                     /translation="MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELR
                     INPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFEEVSMDEIKNFRQWGSKTPGHPEF
                     GHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
                     VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGT
                     DVDAIFAAIEKAKAAGKPSLIEIKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALD
                     WNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPELAAEVTAILEGRDV
                     VEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQ
                     DSVNPLNRNIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGL
                     PVTYVFTHDSIAVGEDGPTHEPIEHLAGLRAMPNLNVFRPADARETQAAWYLSLTSKS
                     TPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEVAGFDTILLASGSEVNLAVKAAKELE
                     AAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVL
                     GIDTFGASAPAQTVIDNYGFTVENVVKLVGEL"
     gene            complement(12157..13248)
                     /gene="ulaG"
                     /locus_tag="U1404_000918"
     CDS             complement(12157..13248)
                     /gene="ulaG"
                     /locus_tag="U1404_000918"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HEM5347886.1"
                     /translation="MAKVQDITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     NCGVWIKTPGGANVVMDLWSSRGKSTKKVKDMVWGHQMANMAGVRKLQPNLRVQPMVI
                     DPFAINELDYYLVSHVHSDHMDISTAAAIINNPKLDHVKFVGPVESGDIWEKWGVPAD
                     RIIRIAPGDSFEFKDIKVHAVESFDRTCLVTLPIEGYDENGGKLAGLPVTDELMARKA
                     VNYVFETPGGTIYHGADSHFSNYFAKHGRDFNIDVAINNYGDNPIGIQDKMTSIDLLR
                     MAENLRAKVIIPVHYDIWSNFMASTDEILQLWKMRKERLQYDFHPFIWEVGGKYTYPM
                     DKDRIEYHHPRGFDDCFLEDSNIQFKALL"
     gene            complement(13358..15046)
                     /locus_tag="U1404_000919"
     CDS             complement(13358..15046)
                     /locus_tag="U1404_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM5347887.1"
                     /translation="MLLDKSSCALLRYLIGLQEPETIMAISKGLQQSRRKIYYHLEKI
                     NDALPTTVESIESLPRLGIRLTEAQKLACRDLLDSIDSYTYVMSMPERIQLMLVYICI
                     TPERVTIERLMELTEVSRNTVLNDLNEIRTQLAQEQYKMTLYVSKSHGYSLVCHPLNK
                     IQYVHSLLYTIFLDANKGFLQVLEDKLFELVGCQLLFSEEMAQFLQGQVSQLEKKLGK
                     KINRYEIEFMLKVLPFLLLSYRNMELDDLEERAILKEFEQVRERIEYRVAQELKDALL
                     QTFDLKLDEIEISLIAILLLSYRKDSDVHVFSQDFIDLKRVVERFIHHFEIHSPFELE
                     NPDELAKHLLAHCKALLFRKTYGILSKNPMVQQIQDKYSTLFAMTRVSGKILEEEWQI
                     ELSDGDIAYLTIHLGGAIRRSGTRKAQTQIVYLICDEGVSVQRLLYKQCQHHLPDKKI
                     GAVFTTEQFKSVEDLLEVDFLITTSDGLETDFPLVQVHPILDFDDVLNMTHFAKYRSL
                     ADEKQVFAVELDKLLSGYIADGRTARELKQRLQKLITNELLTNLSSQDIETDLY"
     gene            complement(15171..15788)
                     /locus_tag="U1404_000920"
     CDS             complement(15171..15788)
                     /locus_tag="U1404_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347888.1"
                     /translation="MRKFLQDSLTETAYYLELILSAILGLALLALSTLLFADLLSSLA
                     GDIQADTFIQNFLSRAMTLAVGVEFIKMLYKQSPSTVIEVLLVAIARQLIVEHGSSSD
                     YLIGIISVAILFAVRKYLFTQFDDSNNIIMRASQKVKVANIIARVKIPSEGSETLRDF
                     VTRKLNEEEKTIAIGACVYLKNVALRIDNMHGELITRVEIIKSIY"
BASE COUNT         4518 a         3585 c         3176 g         4565 t
ORIGIN      
        1 ttatataaga ttttatgtat caattatggt ataatatatc taaattacac caactagaaa
       61 ggatttttta tgaccaaaca aaccattgcc atcttgggac ccggttcatg gggcaccgcc
      121 ctaggacaag ttctcaacga caacggtcat actgtccgta tttggggaaa tgtccccgaa
      181 caaatcgacg aaatcaataa agaacataca aataagcgct atttcaagga tgttatccta
      241 gatgaaaaca tcaagggctg taaggatttg actgaagcct tggacggtgt tgacgctatt
      301 cttttcgttg taccaaccaa ggtaacacgt ctcgttgcca agcaagtcgc acaagctctc
      361 aaacacaagg tagttgtcat gcacgcttca aaaggcttag agcctgatag tcacaagcgc
      421 ttgtctgagg tactggagga agaaattcct gctgaactcc gttctgaaat cgtcgtggtt
      481 tcagggccaa gtcatgcaga agagactatc gtccgtgatt taaccttgat ttctgcagct
      541 tcaaaagact tggaaacagc cagctacgtc caaaatcttt tcagcaacca ctacttccga
      601 ctttatacaa ataatgatgt catcggtgta gaaacagcag gtgcccttaa aaatattatt
      661 gctgtcggcg ctggcgcttt acacggactt ggttatggtg ataatgccaa ggcagctatt
      721 atcgctcgcg gtttgacaga aatcacacgt ctaggcgttg ctatgggcgc aaatcctctg
      781 acttacagcg gtctttctgg tgttggtgat ttgattgtta ccggtacatc tgtccactcc
      841 cgcaactgga gagctggaga tcagctcggt cgcggtgaaa aactcgaaga tgtagaacgc
      901 aatatgggaa tggtgattga aggtatttca acaactaagg cagcctatga gttggctcaa
      961 gaattagatg tttacatgcc tattacccaa gccatctaca aggtcatcta ccaaggtgca
     1021 ggtattgaag atgccatcaa agaaatcatg acgggtgaat tccgccatga aaatgaatgg
     1081 cattgattct tattaaacac aaaaaaataa attataaagg attacatact tatgaaaaaa
     1141 gttagaaaag ctgttatccc agctgcaggt ttgggaacac gtttcttgcc tgctactaag
     1201 gctcttgcca aggaaatgtt gccaatcgtt gacaagccaa ccatccaatt tatcgttgaa
     1261 gaagccctcc gttcaggtat tgaagatatt ttggtggtca ctggtaagtc aaaacgttct
     1321 atcgaagacc actttgattc aaactttgaa ttggaataca acctcaaaga aaaaggcaaa
     1381 aatgatttgt tgaaactggt tgatgagaca acaggtattc gactacactt cattcgtcaa
     1441 agccatccac gtggacttgg ggatgctgtt cttcaagcaa aagcctttgt cggaaatgag
     1501 ccatttgttg tcatgctcgg cgatgacttg atggacatca cagatacaaa agctgtccca
     1561 ttgaccaagc aactcatgaa cgactatgaa aaaacacatg cttcaaccat tgctgttatg
     1621 cctgttcctc atgaagaagt ttctgcatac ggtgttatcg ctccacaagg tgaaggtgtc
     1681 aacggtctct atagtgtgga aacctttgtg gaaaaaccaa aaccagaaga cgctccttct
     1741 gaccttgcta ttatcggacg ctacttactc actcctgaaa tctttgagat tttagaaaac
     1801 caaaaaccag gtgccgggaa cgagattcaa ttgacagatg ccattgatac tctgaacaaa
     1861 acgcaacgtg ttttcgctcg tgaattcaaa ggcaaccgtt acgatgttgg ggataagttc
     1921 ggtttcatga aaacttctat cgactacgcc ctccaacacc ctcaagtaaa agatgatttg
     1981 aaacaatact taatcgatct tggtaaaaaa ttagatacaa agaaaaacta gcaatcgcta
     2041 gtttttttct tatatcaaat agaatatccc tagtagaaaa acgatcaagc tcatatagcc
     2101 aatgaagctg aaaaaaatct gttttcctgt aaagagatcc ttttccacaa gagggggaag
     2161 gaaaatcacg accaaacaac caccaatagc tcctccaata tgtcctgcca tgctaatggt
     2221 tggattaaaa agtcccaaga ccaagttcaa tcccaaaaga accatataac gttgaccgag
     2281 aacctgtaga taagggctgc gactaaattt cctcaaaagt gccatagctg caaaaagacc
     2341 aaacagagag gtcgatgcac ctgcaccaac tacatctggt gtaaagaaga gaacaaaaag
     2401 attgcccatt atcccagaca agagatagag gagaaagaag cgccgtgacc caaacagtcc
     2461 ttctaattga taacccaaac caagcaaggt aatgctgtta aagataaaat gttcccaacc
     2521 aatgtggaca aagataggag aaatcaagcg ccacaactga gtcggatcat acctcaccac
     2581 ttgaccgtac ataccaccga attcaaaaat cgtataggct gtagtggtct gcccaaatcg
     2641 aaatatttgt atcaaaagaa aaacaagagc cgtgactgcc aacaaggcat tggtcacagg
     2701 atagcgctta tcaaaaaagt tcttcaaaaa tcaacaactc ctttactgga atatcaaata
     2761 catctggttc aaaatcatag acttgaaagt ctgccaaggt cgataccgtc tccccttgat
     2821 aatctgctag gtagcgatca taaaaaccgc ctccataacc cactcgaaaa cccgcttgat
     2881 tccaagctaa accaggaaca tggatcaact taaccacaga cttatccaca ggttgtgaat
     2941 aagtcccagg ttcccaaact ccaaacctag atttcatcaa atcatcagga ttatattcta
     3001 caaaatccat acgaccttgt gaataggtct tagggatgaa aatctgcttg ccatcctttt
     3061 gagcctgctc aatcaggtaa gaagtgtcaa actcatgggg catggaaagg taggttccaa
     3121 gcgactttga gcacttatag gtatcagatg aaaggagcct ttctgttagt tgctgactcc
     3181 atcttgctcg ctggctacta gtcagggctt tcaatctctg caagacctct tgtcgaattt
     3241 cttttttatc cacaggaact cctttctttt cagaaaaaga ctggaaactc cagtctagtt
     3301 tgctttcatt ttcaaaaaat cgctcaactt atccacagca aagggaagca cttcctcttt
     3361 gggactgaga cgtggattgt gaaggggata aggcgtatcc acacccaacc agaacataac
     3421 acccggaacc ttgttaagca ggtagccgaa gtcctctccc gtcatggcag gtggacaatc
     3481 aatcatctcc actccgtcaa caccatcaaa gtaggtcatc agttcatcag ccagctgggg
     3541 attgttctcc acaggcagat aaccgctagg attaagctcg atctccaagt ccactccaaa
     3601 ggacagggcg attccctcgg ccacttcccg cacccgtttt tgcaccaaga ggctcatgtt
     3661 ctgagtcaag gcccgaatgg tcccgtgcaa aaaggccgtt tcagcaatga cattgttggt
     3721 cgtgccagca tgcatggagc cgaaggtcac caccgctccc tcgatcgggt caacgttacg
     3781 gctgaccacc gactgcacct gagtcacaaa gtagctggct gccaccaagg cgtcattggc
     3841 ggtatgggga aatgctgcgt ggccaccctt tcctgtaaac cgtatcttga cttcacaggt
     3901 tccagcaaag agggtcgcac ggttggtggc catttgaccg actttgaggt caggtcggac
     3961 atggagccca taaaattcat ctggcaacca atccccgaaa gcccccgctt catacataag
     4021 cataccacct gctagatttt cctccgcagg ctgaaacaag aagagaagat tatttctcgg
     4081 ttgctgctct gccattttct ccaaaagccc cagggcaatg gtcatgtgga aatcatgtcc
     4141 gcaggcgtgc atccggtctg ggtggaggga cttgaagccc agctccgttt cttccacgat
     4201 aggcaggccg tcaatatctg cccgccagcc gatggtcttt tcaggagcag aacctgtcag
     4261 atagaccagg atacctgtct tccatgtacg gacttgggca aaagagcaat cttccaacaa
     4321 gttctcaata gtttccataa gaaaggcgtg tgtcttgaac tcctccatac ccagctctgg
     4381 aatctggtgg agggcccggc gtgtcgcgat taaatctagc atagctacct cttagagtgt
     4441 ccgcaaagcc tcttccaagg ctgttttttg ttgggtttga gcgtcgattt ccttgatgat
     4501 gcgggctggc acacctgcca ccactacgtt ttcagggacg tcttgggtca caatagcacc
     4561 ggctgcgaca acagagccac taccgatttg tactccctcg atgacaacgg cattggcacc
     4621 gaccaaaaca ttgtcgccaa cacgcactgg ctcagccgaa gctggctcga taacacctgc
     4681 aaggaccgca cctgcaccga tgtggctgtt tttaccaacc gtcgcacgac caccaaggat
     4741 agcacccatg tcaatcatgg tacctgggcc gatttccgca ccgatattaa tgaccgcacc
     4801 catcatgata acggcattat caccgattgt cacttggtca cggataatgg cacctggctc
     4861 gatacgggca ttgatgttac gtttgtctag caaaggcaca gccgaattgc ggccgtcttg
     4921 ctcaaccacg tagtctacat tttcagtcaa gtttgtcaaa agtggctcga cgtctttcca
     4981 gtcaccaaag aggacgttgc caagttttgt cacttctgca ggaacaggac cagccaattc
     5041 accttcaaaa gtcactttaa cagttgtctt tttcaccgca ttaccgataa aggcaatgat
     5101 ttcttgtgca gtcatttttt gtgcagtcat aatgattcca atctaaaaat aatatttttt
     5161 ctattatatc aaaattttct gaaaatttgg gaagaaatgc aaaaaaatgg aaaagaggcc
     5221 ctcagttccc aatgttatta agttagctaa cttaataaca ttgggcagga gccaaatctt
     5281 tctctgttat tcatttaata atgtttgtgc ctgttcatgc acaactgtca tcgtttgttt
     5341 tagttgaaca cgaactgttt ttaaactatc caaaacagta gctcgtgctt cttctggaat
     5401 cactgtcgag tcatccccta atgtcgcaaa ttgtgaatct agtgctgatt tttgttgttc
     5461 aagcatcgtt acaatttgct cacgatatgg ttttaaagta gtctgtgctt cttctggtaa
     5521 ctgaacaatt aacccatcaa agtcagcaac ataagagtcc atcaatgagt tcaatgatgt
     5581 tttatattct ccgatagtct gaatcgcatc aatttctgca tctgccagat aagtcactgt
     5641 tgactctttt aaagtaacag tcgaggattc agatgtagac tctttagtag aggatttcgt
     5701 tgtggatgtt tgttccgttg aagagctttt tgacgttgtt tcttccttac tattagagca
     5761 agccaccaaa ctagtaactg ttagaagagc tgagaaaatc agcaaccatt tctttttcat
     5821 tataaaactc cttttgttta ttactactag ataatattat ttttaagtat gaaagtcaag
     5881 tatatctaga aaacaattta tctttttaga atatacaacc agtagccctc tcaaatgcag
     5941 aatcattatg agaatcacta ggtttttata gggtatttca taccgttcct gactaaacac
     6001 tcggataaag cttgataaaa tctgccggat tgactagaaa ttttataccg aacaaattgg
     6061 catattcatc tcctaaaaat tgttaatatc cctagtatat attaccatgc aattttgtaa
     6121 atttttacag taagctactg ggtcgactcc atacagccca ctgcgtaatc tctaaccaat
     6181 ccctgttgat tcaagactag accatgcaga actccgccgt aaacagctcc tccgtcaatc
     6241 cccattttcc catctgaact ggtccagatt tggctaatgc ggagcttggt ctggtagagg
     6301 ttataaacag gggtatgccc aaagacaatc attttccctg tggtattttc ggcctcatgg
     6361 aaaggggtac gtaaccaaac cttatcatga ttactagttt ttcgccagtc tggcaaagtc
     6421 aagtccacac cagcatggac aaagatatat ccttccgttt ccagatgata gggacaagat
     6481 ttgacaaaat caatcaactt ctcatattgt tccatcactg cattagcatc caccaaacca
     6541 tctacaggag catccaaggg acgacctaat agcgagttga tggtcgtatc tccaccattc
     6601 ctccggtaat ggtcatagcg ttccaaggga tcccgcaacc aagccaaaaa cattcgttca
     6661 tgattcccag tcagacagat agcatctttt tctcggacta attgccagac caactccaaa
     6721 caagcttttg aattttctcc acggtcaatt aaatccccaa gaaaaatcag ctgttgtcgt
     6781 tcttcattcc atttcttcaa aatatcgagt agcagttcaa actttccatg gacatcgccg
     6841 attacaaaaa aatctttttt catagactct attctaccat atttaataag caaagaaaaa
     6901 ctgaccgttt ccgatcagtt tcattctatt acaaacgtgc gttcaattct gcaccgagtt
     6961 cttcaaatcc tggttttcca agaagagcga acatgttttt cttgtaggct tctacacctg
     7021 gttggtcaaa tgggttgatc gcattgaggt aaccagagat agcaatcgcc aactcgaaga
     7081 agtagaaggt gtaaccaagt gtgaactcat cttgttgcgg aagggtcaca aacatgtttg
     7141 gtacgccacc atctgtgtga gcaagaagca cgccgtccgt tgcttttttg tttacaaagt
     7201 caacatcctt accttgcaag tagccaagac cgtcaaggtc ctctgccatg tcaggaatga
     7261 ggatattttt tcttggtttg tcaacacgaa ccactgtctc aaagatattg cggtttcctt
     7321 cttggatgaa ttgcccaaga gagtgcaagt ctgttgagaa gttagcagat gttgggttga
     7381 tacctttttg gtccttacct tctgactcac cagccaattg tttccaccat tcgctgaagt
     7441 attgaagtga tggctcgtag ttagccaaga tttctgttac atagcctttt ctgtaaagga
     7501 tgttacggac agctgcatat tggtatgctt ggttttcagc aatcttatca gatgtaaatg
     7561 tcgtgcgggc tgcgtttgca ccttccataa gggcatcaat gtctgcacca gctgccgcga
     7621 ttggcaaaag accaactgca gtcaagactg agaaacggcc accgacatca tctggaacaa
     7681 caaaggtttc ccaaccattt gcgtccgctt caaccttaac agcacctttt gccttgtcag
     7741 ttgtcgcata gatacgcttg ttagcttctt cttgaccgta tttcttgaca agtaattctt
     7801 tgaagacgcg gaaggcaata gcaggttcag ttgttgtacc tgattttgaa atcacgttaa
     7861 ctgagaaatc cttatcagca acataatcca ccaagtcagc aagatagctt gatgagatag
     7921 agtttccagc gtaaaggatt tgtggagctt tgcgctcttc acgtgtttgc aagtttacaa
     7981 aggcattgct caagaaatca atagctgctt tagcaccaag gtaagaacca ccgataccga
     8041 taactaccaa aacttcactt tcattttgga ttttagctgc agcttccttg atacgagcaa
     8101 actcttcttt gtcgtagttt tctggcaaat ccaaccagcc gataaagtcg ctaccaggac
     8161 ctgttccttg acggagcatt tggtctgcaa gggtaacttg tggttgcatg tattctactt
     8221 cttgagctcc aacgaattgg cccaagactt ttgaataatc aaatgtaata tgtgtcatgt
     8281 ttttcctcca tttatgtacc ataatatgat aacgctttat catatttttt tcaagaaatt
     8341 tatcaatttt catttatttt catgaaatat gttgtataaa tcttaatttt tgtgaaaatc
     8401 taacgaaatt ttcgcgtttg taataatcct ccaaagtctc tcccgactgg gttactgtaa
     8461 tccatttcgg gagaatctta gatagtaggt aaagcggaat gagggcagga taccaaatga
     8521 acatgacttc aaagatgaaa cggtcgttgt tgcctcttga aatgtaacgt tggcggtatt
     8581 cttctttgag agaagggtgg ggaatataga tatgaaatgg cacaccaccg cgtatagaca
     8641 tggccagcaa cattctcatc agaaaattca gcgctactag gactgtcttt ccttgtctat
     8701 gaagagtgta ggccttattg acatagattg ttttatagcc tttatccttc agtgtgcgtt
     8761 tggtggattt tcgctcctct ttcgttaaat gacgaacact gctattatcg tacttaatgt
     8821 cggacatttc taagtccaca acatctgtat atttcttagc aagtgtcgtt tttcccatac
     8881 ctggaaaggc aaataaaaac ataggctttc ctccttattc ctcagtagaa tagcagagca
     8941 tccaaaaagt tttcttaagt tgcccctatt ttgcccctca tttctaaaaa taaaccaaag
     9001 aaaaaccctc tgaaatcctg atttcaaagg gtttttagat tatatgcaaa aagagcacac
     9061 attcgacctc gcttagggct gctggattcc tcccctgacc cgcttcacgc acgaatgttg
     9121 ctccgtttaa tattataaca caatttggcc agagtgcaag tttggaatat taactagcta
     9181 tccgaagttg cttcctcttg cgtcttcatg ataagtttag cagccttctg tctttctctg
     9241 cgttgtctga aaaaatcttg catgatattg gcacattccg cttctaaaat acctgtttct
     9301 accttgacac gatggttgag ccgctcatct gtcagaatgt catagaggct ccccgcagct
     9361 ccaaactttt tgttggttgc tccatagatg acctgcggaa tgcgtgctag gccaatagct
     9421 ccgctacaca tcacacaagg ttcaatcgtc acaaaaaggg tcgaatcaag caagcgccaa
     9481 ttcccctcaa cattgttagc ctcttggatt gccataacct cagcgtgcat gattgcctga
     9541 ttgagttcct cacgcgcatt atgccctctg ccaataatct ggccatcctt gacaatcaca
     9601 caaccaattg gaatttcatc cttttctagc gactttctag cttcctgcaa ggcttgagtc
     9661 ataaaatact ctttttcttc atgtgtatag ttcataaatc tattatagca cagccctgat
     9721 aacagttcaa aatcacttct ttattctctg ctatcaaaat caatctaaca ctacttcttc
     9781 cttatcacac atttctttca aaattctgcc cttctattaa cttaaaaata taaaaatacc
     9841 tcctcagtcg agaaggtagg gggagcaata ttgatattta cagatattaa tatatcatct
     9901 attgtcgata ttgtcaagaa aatttttaaa aaaattcaaa aacagcctcg aaaggctgtc
     9961 tctgacattt tctattacaa ttcgccaact aatttcacaa cattttctac tgtgaagccg
    10021 tagttgtcaa taactgtttg ggctggagct gaggcaccga atgtgtcgat accaaggact
    10081 ttaccgtcaa gaccgacata cttgtaccaa ctttgagttg cacccatttc aattgccaag
    10141 cgacgacgga tagcatttgg aaggatttct tccttgtaag ctgcgtcttg tgcatcgaag
    10201 agttcagttg atggcacaga aaccacacga accttagtac ctgctgcttc tagttctttg
    10261 gcagctttaa cagccaagtt cacttctgaa ccagatgcaa gaaggattgt atcaaaccct
    10321 gctacttcat agacaacata agcccctttt gcaaccttgt caaagtctgt tccttcttca
    10381 actgtcaagt tttgacgagt gagaacaagg gctgatggtg tagacttgct agtcaatgac
    10441 aagtaccaag ctgcctgtgt ttcacgcgca tctgctgggc ggaagacatt gaggtttggc
    10501 atagcacgaa gtcctgccaa gtgctcaatc ggctcgtgag ttggaccatc ttcaccaact
    10561 gcgatagagt catgagtgaa gacataagtc acaggaagtc cttgaagagc tgacaaacga
    10621 actgctgctt ttacatagtc tgagaagaca aagaaggtac caccatagac acgaagtccg
    10681 ccgtgggctg ccataccatt caagatagtt cccatggcaa attcacgcac accgaactga
    10741 atattgcggt tgagtggatt tactgaatct tgcaaaccat cttccttgat gtaggtcatg
    10801 tttgagtgag ccaagtcagc tgaaccacct aagaaagttg gcaatacttt agccgctgcg
    10861 ttgagggcat cttgtgatga gttacgagtt gcttgtgaga agccattttc gtaaaccggg
    10921 aagtcttctg gcttaatttc aactacgtca cgaccttcca agatagctgt tacttcagct
    10981 gctaattctg gatgtgctac tttgtagtct tcaactaatt tcacccaagc atcgtaggct
    11041 gctgcaccgc gatcagctac attagctttg aagtccgcat agacttcagc tggaatttca
    11101 aatggtgcat agttccaatc aagcgcctta cgagttgctt ctgtttcttc tgcaccaagt
    11161 ggagcaccgt gaacggcatt tgtaccttgt ttgtttggcg aaccatgacc gataacagtc
    11221 ttgatttcga taagagatgg cttacctgct gccttagctt tttcaatagc agcaaagatg
    11281 gcatctacat ctgtaccgtc tgttacgagg tctgtatgcc agccataggc attgtaacgg
    11341 gcacgtacat cttctgtgaa ggaatctttt gtttcgccat ccaagttgat gtcatttgaa
    11401 tcgtaaagaa cgatgagttt ttctaatttt tgaagacctg cgtaagaagc cgcttctgct
    11461 gaaacaccct ccatcaagtc gccatcacca cagattacgt aagtatagtg gtcaaagatt
    11521 gggaaaccat cgcggttgta cttagctgca aggaaacgct ctgcttgtgc aaaacctgtc
    11581 gcagttgaga taccttgtcc aagaggacct gttgttgcat ctacacctgc tgtgtgacca
    11641 aattctgggt gacctggcgt ttttgatccc cactgacgga agttcttgat ctcatccata
    11701 ctcacttctt caaaacctga aaggtgaaga agtccgtaaa gcaacattga cccatgacct
    11761 gctgataaga taaagcggtc acggttcacc cagtttggct gagctgggtt gatacgaagt
    11821 tctttagtaa aaaggctgta ggccattgga gccgcaccca tgacgacacc tgggtgacct
    11881 gattttgatt tttcgatggc atcaatacca aggaaacgaa tcgcattgac tgaaagattt
    11941 gacatgtttt tctccttttt taaagtcatg aatttattat accataaagc gttttctatg
    12001 tctgtttgaa atgaagcgag aaataaattg tccgtagaaa agaggcagga ctttcgtccc
    12061 gcccttggag tgaacagtag taattcgcac atttcatact ttatcagagt ttatagtgcc
    12121 tctcctcgtc tctatggggc aagagagttc taaatcttat aacaaagcct taaattgaat
    12181 atttgagtct tctaagaagc aatcatcaaa gccacgtggg tggtgatatt cgatacggtc
    12241 cttgtccatc ggataagtat acttgccacc aacttcccag atgaatggat ggaaatcgta
    12301 ttgcaagcgt tccttacgca ttttccagag ctgcaagatt tcatctgttg acgccatgaa
    12361 gttagaccag atatcgtagt gaacagggat gattacctta gcacgcaagt tttctgccat
    12421 acgaagaagg tcgattgatg tcatcttgtc ctggataccg attgggttgt caccgtagtt
    12481 gttgatagca acgtcgatgt tgaagtcacg accgtgtttt gcaaagtagt ttgagaagtg
    12541 ggagtctgca ccgtggtaga tggttccgcc aggcgtttca aagacatagt tgactgcctt
    12601 gcgagccatg agttcatctg tcacaggaag tcctgctaat ttaccaccat tttcgtcata
    12661 accttcgatt ggtaaggtca ccaagcaagt acggtcgaag gattctacag cgtggacctt
    12721 gatgtctttg aactcaaagc tatcacctgg tgcgatacgg atgatacggt cagctggaac
    12781 accccatttt tcccaaatgt caccactttc aaccggtccg acaaatttga cgtggtccaa
    12841 ctttggattg ttgatgatgg cagcggctgt gctgatgtcc atgtggtcac tgtggacgtg
    12901 cgatactaga tagtagtcca attcattgat ggcaaatgga tcgataacca ttggctgcac
    12961 acgcaagttt ggttgcaatt tgcgcacacc ggccatgtta gccatctggt gtccccaaac
    13021 catatctttc acttttttag tggattttcc acgtgatgac cagaggtcca tgaccacgtt
    13081 agctccacct ggtgttttaa tccagacacc acagtttcca agccaccaca tagcaaagtt
    13141 gccttctggc actacttctt cttcaatttc ttcattgagc caagttcccc attctgggaa
    13201 ggttgaaaga atccaggatt ctcttgtaat atcttgaact ttagccattt tccattcctc
    13261 ctataaggta cgtttctatg cttctagtat atgctccaaa ggcaacaaaa aaaagaccaa
    13321 ataaaacaca ggcttgtgtt caaacttgga ctttacccta atacagatct gtctcaatat
    13381 cttgactgga taaattggtt aataattcat tggtaatcag tttttgtagc cgttgtttga
    13441 gttctcgagc ggtccttccg tctgcgatat atcccgacaa aagcttgtct agttctactg
    13501 caaaaacttg tttttcatct gccaaactac gatattttgc aaaatgagtc atgtttagca
    13561 catcatcaaa atctaaaatg gggtgaacct gcaccaaagg gaaatccgtt tccaacccat
    13621 cgctggttgt aatcaagaaa tcaacctcta gtaagtcctc gacactcttg aattgttcag
    13681 tggtaaagac ggcgccaatc ttcttatctg gcaaatgatg ctggcattgt ttataaagta
    13741 agcgttggac tgacacccct tcatcacaga ttaaatagac aatctgtgtc tgtgccttgc
    13801 gcgtcccact gcgtcgaata gctcctccta gatgaatcgt caaataggca atatctccat
    13861 cggataactc aatctgccac tcctcctcca aaatctttcc agaaacccgt gtcatagcaa
    13921 acagggtgct gtatttatct tggatttgtt ggaccattgg atttttagat aggatgccgt
    13981 aggtttttct gaacaacaga gccttacaat gtgccaagag atgtttggct aattcgtcag
    14041 gattttccaa ttcaaatggt gaatgtatct caaaatgatg aataaatcgc tctaccactc
    14101 gcttcaagtc aatgaaatct tggctgaata catgaacatc gctgtccttt cgataggata
    14161 gaagtaaaat ggcaatcagg gagatttcta tttcatccaa tttcaaatca aaggtttgca
    14221 acaaggcatc tttcaattcc tgagcaactc ggtactcgat acgctctcga acttgttcaa
    14281 attctttgag aatggctcgt tcttccaagt catccagctc catattgcga tagctaagga
    14341 gcaagaaagg caatactttg agcataaact cgatttcgta gcgattgatt ttcttaccca
    14401 gtttcttttc tagctgcgat acttgtccct gtaaaaattg tgccatttct tctgagaaga
    14461 gcaactgaca ccccaccaac tcaaataact tatcttctag aacctgcaaa aaacctttat
    14521 tagcatccaa gaagattgta tagagaagtg agtggacata ttggatttta tttaaagggt
    14581 gacaaacgag actatagcca tgactcttag acacatagag ggtcatcttg tattgttctt
    14641 gagccaactg ggttcgaatt tcattcaaat catttaagac cgtattacga gagacttctg
    14701 tcaactccat tagacgttca atggtcactc tttctggtgt gatacagata tataccaaca
    14761 tcagctgaat gcgctcaggc atgctcatga cgtaggtgta cgaatcaatg gaatcgagaa
    14821 gatctcgaca ggctagtttt tgcgcttcgg taagtcgaat accgaggcga ggtaagcttt
    14881 caatactctc tacagttgtt ggtagggcat cgtttatttt ttctagatgg taatagatct
    14941 ttcgacgtga ttgttgcaag cccttggaaa tagccatgat tgtctcaggt tcctgcagac
    15001 caatcaggta cctcagtaga gcgcaactac tcttatctaa taacaagatt ctcctcctct
    15061 ttcccccgtc ccgttactat cttaacataa ttatctggga tgttctaata attattaaaa
    15121 ttcatctgat cattacttgc tttatgttgc ataaatattt gtagttagaa ttaatagatg
    15181 cttttaataa tttctacccg ggtaatcagt tctccgtgca tgttatctat ccgaagggca
    15241 acatttttca aatatacaca ggcaccaata gcaatggttt tctcttcttc attgagtttt
    15301 cgtgtcacaa aatctctcaa agtctcgcta ccttcacttg gaatttttac tcgtgcgatg
    15361 atattagcca cttttacttt ctggctggcg cgcatgataa tattattgga atcatcaaac
    15421 tgagtgaaga ggtattttct aactgcaaat aggatggcga ccgaaataat tccaatcagg
    15481 taatcactac tagaaccatg ctctacaatc agttggcgag caatagcaac caggagtacc
    15541 tcaatcacgg tgctaggtga ctgtttgtaa agcattttga taaattcgac tccgactgcc
    15601 aaggtcattg cacgactcag aaaattttga ataaacgtat ccgcttgaat atcaccagct
    15661 aatgagctga gtaggtctgc aaaaagaagc gttgacaagg ctaaaagtgc taagccaagt
    15721 atggcagata aaatcaattc taaatagtag gctgtctctg tcagactatc ctgtaaaaat
    15781 ttcctcatct ttctcctcat caaaagggaa aaagcagttc tcctttttgg ggagtctgct
    15841 actt
//
LOCUS       DASGCC010000043        15723 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.043, whole genome shotgun sequence.
ACCESSION   DASGCC010000043 DASGCC010000000
VERSION     DASGCC010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15723
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.043"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            94..933
                     /locus_tag="U1404_000921"
     CDS             94..933
                     /locus_tag="U1404_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5347889.1"
                     /translation="MIIKRVLNHNAIIAQSNKNVDILLFGKGIAFGKKVGDAIPPSSI
                     EKSFLLKNSDNMNRFTELFIDVPIELVYVCEKIINLGKITLGNHFDEIIYINLTDHIN
                     SSIERHKEGVVVTNPLRWEIAKYYKEEFELGKKALSIIKKDLHVELPVDEAAFIALHF
                     VNANLENIFQESYRITGIIMKIEQIIQDYYSTEFNQDSIDYYRFITHVKLFAHRLVEG
                     NEYNDEDDVDLLELMKKKYPREYQCGTRVADFIRLEYDYLLSPSELVYLIAHIRRLTK
                     NLS"
     gene            944..2785
                     /locus_tag="U1404_000922"
     CDS             944..2785
                     /locus_tag="U1404_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5347890.1"
                     /translation="MKYKNTALAILEAVGGEKNVLRATHCVTRLRLELKDENIVSDER
                     VKSISGVLGIMKKNGQYQIILGNDVANYYKEFTALGKFDSDSVQQVKKANVLEQVIEY
                     IAGSMTPLIPAMLGGGMIKVLVIVLPMLGLLKADSQSISFLAFFGDAPYHFMPIFLAY
                     SASQKLKVTPALAMSVAGILLHPNFVQMVSSGDPLHFLGAPVTPASYGSSVIPILIMV
                     WLMKYIEAVFNKVTPAITKSFLQPTLVLLVSGFIALVLVGPLGVIVGEGLSQLVEQMH
                     GVAGWLTLAVLGAIMPFIVMTGMHWAFAPIFLAASIATPDVLILPAMLGSNLAQGAAS
                     MAVAFKSKNSNTKQIAFAAGFSALFAGVTEPALYGVTLKYKKPLYAAMIGGGLAGLFV
                     GLTGVKAYLFAVPSLIALPQFIYSEAASNITNAMIAAAISIIVTFILAYFLGIDEETS
                     TVNLEKVAPGISSRKNVFSPLSGQILPLEKVNDATFSKKMLGEGVAIIPKDGKVYAPF
                     DGAITSLFPTKHAIGLTSDEGVELLIHFGLETVELKGRGFVSHVSDGEKVEKGQLMLE
                     VDVEMLVAEGYDIVTPVVVTNTQEYLDVLLLSTKEEVNYADDLLAVL"
     gene            2800..4224
                     /locus_tag="U1404_000923"
     CDS             2800..4224
                     /locus_tag="U1404_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5347891.1"
                     /translation="MSIFPDNFLWGGAVAANQVEGAYNEGGKGLSVQDVLPNGGLGEA
                     TQEPTEDNLKLQAIDFYHRYKEDIALFSELGFKVFRTSIAWSRIFPNGDEEFPNEEGL
                     QFYDELFDELLKNGIEPLVTLSHYETPLYLARKYHGWVDRKMIQFFEKFARTVFERYK
                     DKVKYWLTFNEVNSVLELPFTSGGIDLPNEELSKQDLYQAIHHELVASSLVTKIAHEI
                     IPDCKVGCMVLAMPTYPMTPNPEDVWAAHAYENLNYLFSDIHVRGYYPNYAKRYFKEN
                     GIKITFMEGDEELLKNNTVDFLSFSYYMSITQAADPSKYSSGRGNILGGLVNPYLEAS
                     DWGWQIDPIGLRLTLNRYYDRYQIPLFIVENGLGAKDQLVKDEAGGLTVHDDYRIQYM
                     QEHLLQVAEAIQDGVEVMGYTSWGCIDCVSMSTAQLSKRYGLIYVDRNDDGSGSLTRY
                     RKKSFYWYKEVIQSNGSILGNSSK"
     gene            4981..5982
                     /locus_tag="U1404_000924"
     CDS             4981..5982
                     /locus_tag="U1404_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5347892.1"
                     /translation="MLKNKNLLATIVALTVMVVAALFLTQKEQNNSTNSTEKVKIGVL
                     QFVTHDSLDEIYKGIKAGLEEGGYTTTDNLEIDFMNAEGDQSQVQTMSKKLVDNGNEL
                     LIGIATPAAQSLANATTELPIIMGAVTDPVGANLVTDLKNPGGNITGVSDQTPVADAV
                     SLIKEITPDAKTIGVLYSSNEDNSKIQVAEFKAAAEEAGYTVLEYAVASSNEIAATVE
                     VASSKADVLFTPVDNTVASAFSTVVSVANKTKTPIFTSVEDMVEGGGIASVTLSQYDL
                     GVATGKMAAKILDGANPADTPVQIFNEGTVVVNQKVAKELGITLSDDVISKASKVIE"
     gene            6005..6871
                     /locus_tag="U1404_000925"
     CDS             6005..6871
                     /locus_tag="U1404_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5347893.1"
                     /translation="MIVSTVSQALLWAVLGLGIFVTFRILNFPDMTTEGSFPLGGAVA
                     VTLLTQGVHPILATLAAVLVGCLAGFVTGLLYTKGKIPTLLAGILVMSSCHSVILFIM
                     GRANLGLLNTKRLQDFLPFSEQVNGLLLGLGSLAVVIGALMFFLYTRFGQAFIATGDN
                     PDMARSFGINTSRMELLGLVLSNGIIALAGALIAQQEGYADVSRGIGVIVVGMASLII
                     GEVIYGNLTMLERFLAIVVGAIFYQFLILVVISLGINTSYLRIFSAMILATCLMVPEL
                     KNKLLKGASLSR"
     gene            6868..7626
                     /locus_tag="U1404_000926"
     CDS             6868..7626
                     /locus_tag="U1404_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347894.1"
                     /translation="MKAIVELKNATKVVTNGFDEERVILDNVNLTIYQGDFITILGGN
                     GAGKSTLFNVIAGTLPLTSGSVHILGEDVTNWPAEKRAKYLARVFQDPKMGTAPRMTV
                     AENLLIAKYRGEGRGLVPRRLAQQTEEFAQLLPRVGNGLEKHLDTPAGLLSGGQRQAL
                     SLLMASLKQPELLLLDEHTAALDPKTSQSLMQLTDELIETKGMTALMVTHQMEDALRH
                     GNRLIVMKNGQIIQDQTAEEKSKMKLEDYYKLFD"
     gene            7809..8294
                     /locus_tag="U1404_000927"
     CDS             7809..8294
                     /locus_tag="U1404_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HEM5347895.1"
                     /translation="MDKLVFESLADLGMDYIVVEHPPALTTEEADRYIEGLEGVRTKS
                     MFLTNKKKTAFYLLIMDDQKQLDMDRFRDLVGANRIRMASSDSLMEKMHLPAGAVSVF
                     GLLHNVDKDIQVFFDKEILSEPILTFHPNVNTKTIFVKTEDVLRFVEEIGFSAKIVDL
                     G"
     gene            8300..8704
                     /locus_tag="U1404_000928"
     CDS             8300..8704
                     /locus_tag="U1404_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEM5347896.1"
                     /translation="MRKCLAICSLLCCLFLVGCRTGAAYQAEIEPMEQSELYTEKEIE
                     AAILVVQDYFDHHFNSCKLLTIGYSGDNEKEFDEWAEHYGAEEAIILTSSFKVAAEGA
                     EPTLEPNSTHTDWKWILVRNVGGKWEHKGHGY"
     gene            8960..10621
                     /locus_tag="U1404_000929"
     CDS             8960..10621
                     /locus_tag="U1404_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM5347897.1"
                     /translation="MSTIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLG
                     VDVVVPNFDYLEENKHRVAGVFLSHGHADAIGALPYLLEKVKVPVFGSHLTIELAKLL
                     VKGNNATKKFNDFHVINAETEIDFGDSVVSFFQTTHSIPESLGIVVKTDEGNIVYTGD
                     FKFDQAADKFYRTDFGRLAEIGNEGVLALLSDSANADSNVQVASMHEAGEEILNTIAD
                     CDGRVIVAAVASNIVRIQQIFDAAEATGRRVVLTGHDVENIVRTAIQLKKLRLVSERL
                     LVKPKDMNKYEDHELIILETGRMGEPLNGLRKMSIGRHRYVEIKEGDLVYIVTTPSIS
                     KEAVVARVENLIYKAGGTVKSITKNLRVSGHGNARDLQLMLNIMKPKYLFPVQGEYRQ
                     LDAHAKAALEIGMYPENIIIVKRGDVMAFEEGDFVHSGAVPAGDVMIDGNAMGDVGNI
                     VLRDRKILSEDGIFIVAITVNRREKKIISKAKVNTRGFVYVKKSKDILREASELVNTT
                     VENYFTKDSFDWAELKSAVRDDLAKFLFDQTKRRPAILPVIMEVK"
     gene            10686..11462
                     /locus_tag="U1404_000930"
     CDS             10686..11462
                     /locus_tag="U1404_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM5347898.1"
                     /translation="MAIMKIEYHSEALDMSRQVTVLYPDRNRVENPDDNDIPVLYLLH
                     GMGGNQDSWLNRSTVERLVRYTNLIVVMVNTDKGWYTNTTYGMNYFDAIAVELPQILK
                     RFFPNMSDKREKNFIAGLSMGGYGTFKIAMMTNRFSHAASLSGALYFDFDNPAAAELG
                     SLSYWQGVFGDISDKQNPNNLLEIAKQSDKKTKFYAWCGEEDFLFEGHQKAVGELKEL
                     GFDIEASFGPGKHEWYYWNQQIEKVLAWLPIDFKLEERLS"
     gene            11528..12223
                     /locus_tag="U1404_000931"
     CDS             11528..12223
                     /locus_tag="U1404_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEM5347899.1"
                     /translation="MKLIGNILRWIWRTFWGLIWLSMMLLACGLGLLFYFQQEAAPQM
                     LQTLAQEVQLMVKGQSEVTIEEGVNTIKHLTTDTVNTADHGRWESNTATVYIETQNPT
                     FVAAYETAIANWNATGAFTFVMTSDPNQADIIATEMNDGNTQAAGEANSTTNLLTNYY
                     SSVTVRLNSFYLLNDQYGYDMDRIIHTAEHELGHAIGLDHEDSQTSVMESAGSNHGIQ
                     QADIDAVLALYSE"
     gene            12234..12599
                     /locus_tag="U1404_000932"
     CDS             12234..12599
                     /locus_tag="U1404_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347900.1"
                     /translation="MLRTITNTIKRYPEQALLFLYNAGIFAWMQSTSHSIMEQIGIDS
                     NWFDKIPEPIKAWTGASLESMQTLLNSSAWGWLIVSMILMLVIRFVKGLIKFVIMLII
                     IGGGLYLLWQNKELVQSLV"
     gene            12650..14548
                     /locus_tag="U1404_000933"
     CDS             12650..14548
                     /locus_tag="U1404_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5347901.1"
                     /translation="MIILSGNKIERSFAGEVLFNNINIQVDERDRIALVGKNGAGKST
                     LLKILVGEETATSGEISTKRDLSLSYLAQDSRFESANTIYDEMLHVFDDLRTTEKRLR
                     SMEEQMGSLSGSDLDQLMKTYDSLSEEFRLAGGFSYEADIRAILNGFKFDQTMWDMKI
                     SELSGGQNTRLALAKMLLESPELLVLDEPTNHLDIDTIAWLENYLVHYKGALIIVSHD
                     RYFLDKVATLTLDLTKHSLDRYVGNYSQFVELKEQKLQTELQNYEKQQKEIAKLEDFV
                     QKNIVRASTTKRAQARRKQLEKMERLDKPTTGQKSANMTFQSDKTSGNIVLTVENAAV
                     GYDGDILSQPISIDQRKLDAIAIVGPNGIGKTTLLKSIIGALPFIKGEAKLGANVEVG
                     YYDQTQSALTPSNTVLEELWSAFPTTPEVEIRNRLGAFLFSGDDVKKSVAMLSGGEKA
                     RLLLAKLSMENNNFLILDEPTNHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVAT
                     KVLEISETGSTLYLGDYDYYLEKKAELEVEAQPDQLESTSQSAGAMDYQAQKENQKEQ
                     RKLARRIEQIEAEIETIENRLSELNQAMLETNDIGQLTDYQKEIDQLTSQQESLMEEW
                     EELSEQMG"
     gene            14557..14886
                     /locus_tag="U1404_000934"
     CDS             14557..14886
                     /locus_tag="U1404_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347902.1"
                     /translation="MIQQNTETLEDNLRFNKLSKLIQTKLSQYFETYPSAVQCQLVCF
                     DRDETRRKVLSYDIYSDFDKLFWVESIAKPISSYSYGHQIDKKDIDKLDREFILDTFL
                     GIDEERG"
     gene            14893..15720
                     /locus_tag="U1404_000935"
     CDS             14893..15720
                     /locus_tag="U1404_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM5347903.1"
                     /translation="MTKHQRFLNSDQFFACPHCGQALGLELNSLRCPNRHTFDIAKQG
                     YVNLAPQVKQSANYHKSSFENRQAFLEAGYYDHLYEALERKIAELGLRSVLDIGCGEG
                     FYSRKLAEKMDLDILAFDISKDSILLAAKSDRTKSVKWFVSDLTKLPIQDKTIDGILD
                     IFSPANYQEFARVLKAGGAILKLVPGPNHLKELRHLAKDQLRKESYDNQDIVDHFKSY
                     LGQVEQVLVSRTLPITAAHAQVLADMTPLFFQVDQSKLDLSQLTEITIEGVLLIGTI"
BASE COUNT         4644 a         2849 c         3620 g         4610 t
ORIGIN      
        1 taaggcgagc aggaacctat ttaaatgaat cgatacgata tatgtcgatt tcttttaagt
       61 aggttctttt attttaagtt taaaggaaaa tttatgatca taaagcgtgt attaaatcat
      121 aatgcaatca tagcacaaag taataagaac gttgatatat tgttgtttgg taaaggaatt
      181 gcatttggaa agaaggtcgg agatgcaatc ccaccttctt cgatagaaaa aagttttttg
      241 ctcaagaata gcgataatat gaatcgcttt acggaattat ttatcgatgt tcctattgag
      301 ttggtttatg tttgtgagaa aataataaat ttaggaaaga taacacttgg aaatcatttt
      361 gatgagatta tttacatcaa tttgacagat catatcaatt ctagtataga aagacataag
      421 gaaggagtag tcgttacgaa ccctcttaga tgggaaattg ccaaatatta taaagaggag
      481 tttgaactgg ggaaaaaagc attatccatc ataaaaaaag atttacatgt cgaactccca
      541 gttgatgaag cagccttcat cgctttgcat tttgtcaatg cgaatttgga aaatattttt
      601 caagaatctt atcgtattac tggaattatc atgaagattg aacaaattat tcaagactat
      661 tattctacag aattcaatca ggattctatt gattactacc gattcatcac acatgttaaa
      721 ttgtttgctc atcgtttggt agaggggaat gaatacaatg atgaagatga tgtggatctt
      781 ttagagttaa tgaaaaagaa gtatccaaga gagtaccaat gtggaactcg agtagcggac
      841 tttattcggt tagaatatga ttatctactg agtccaagtg aattagtcta tttaattgct
      901 cacattcgac gtttaacaaa aaatttatca taaggagtct attatgaagt acaagaatac
      961 tgcattggca atcctagagg cagtcggagg agaaaagaat gttcttcgtg caacccattg
     1021 cgttactaga ttgcgactgg aattgaaaga tgagaatatc gtgtccgatg aacgtgttaa
     1081 atccatttct ggagtactcg gtattatgaa gaaaaatgga cagtatcaaa ttatcttagg
     1141 taatgatgta gctaattact ataaagaatt tactgcatta ggaaaatttg attctgattc
     1201 agttcaacag gttaaaaaag caaatgtctt agaacaagtc atcgagtata tcgctggctc
     1261 tatgacacca cttattccag ctatgcttgg tggaggtatg ataaaagttc tagtcattgt
     1321 cttaccgatg ctggggcttt taaaagcgga ttcccaatct atttcatttt tagccttttt
     1381 tggagatgca ccatatcact ttatgccgat ttttttggcc tactcagctt cacaaaaact
     1441 taaagttaca cctgctttag ccatgtcggt tgctggtatt ttgctacatc ctaattttgt
     1501 tcaaatggta tcttcaggtg atccacttca ttttttaggt gcccctgtta cacctgctag
     1561 ctatggttca tcagttattc caattcttat tatggtttgg ctaatgaagt atattgaagc
     1621 tgttttcaat aaggtcactc cagcaataac aaaaagtttc ttacagccaa ccttggtcct
     1681 gcttgtttca ggtttcatag ctttagttct tgttggacct ctcggcgtta ttgttggtga
     1741 aggattatcg caattggttg aacaaatgca tggtgtagct ggttggttaa ctttagcagt
     1801 tcttggagca atcatgccat ttatcgttat gaccggtatg cactgggctt ttgcaccgat
     1861 tttcttggca gcttcaatcg cgacacctga tgtactgatt ctaccagcaa tgttaggttc
     1921 taacttggca caaggtgccg cttctatggc agttgcattt aagagtaaaa atagtaacac
     1981 gaaacaaata gcctttgcag ctggattttc agctttattt gctggtgtca ctgagcctgc
     2041 tttatatggt gttactctaa agtataaaaa accattgtat gcagcaatga ttggtggtgg
     2101 tctagcagga ttatttgttg gtttgacagg tgtaaaagca tacctttttg cagtaccttc
     2161 tctcattgct ttgccacaat ttatttactc tgaagcagct tcaaacatta ctaacgctat
     2221 gattgctgcg gcaatttcaa ttattgtcac atttattttg gcctatttcc taggtatcga
     2281 tgaagaaacg tcaacagtta atttagaaaa agtagcacct ggcatttcaa gtagaaaaaa
     2341 tgtcttctct cctctttcag gtcaaattct ccctttagaa aaagtaaatg atgcaacgtt
     2401 ttcaaaaaaa atgcttggag aaggagttgc aattatccct aaggatggaa aagtctatgc
     2461 tccatttgac ggggctatta ccagtctttt tccaacaaaa catgcaatcg gtttaacaag
     2521 tgatgaaggg gtagagttgc ttatccactt tggattagaa actgtcgagc taaaaggaag
     2581 aggttttgta agccatgttt cagatgggga aaaagttgaa aagggtcaac tgatgctgga
     2641 agtggatgta gaaatgcttg tcgcagaagg gtacgatata gtgactcctg tagttgttac
     2701 aaatacacag gaatatctgg atgttctctt gctttcgaca aaagaggaag tcaactatgc
     2761 tgatgattta ttagcagtct tataattaga ggagggtata tgtcaatttt tccagacaat
     2821 ttcttatggg gaggagcagt agctgcaaac caagtagaag gtgcatataa tgagggagga
     2881 aaaggattat ccgttcaaga tgttcttccc aatggtggac tgggtgaagc tacccaagaa
     2941 ccaacggaag ataatttgaa attacaagct attgattttt accatcgata caaggaagat
     3001 atagccctgt tttcagagtt gggatttaag gtatttagaa catcaattgc ttggagtaga
     3061 atatttccga atggagatga agaatttcca aatgaagaag ggctacagtt ttatgatgaa
     3121 ctttttgatg aacttctaaa gaatggtata gagcctcttg taactctttc tcactatgaa
     3181 actcccctgt atctggcaag gaaatatcat ggctgggtgg atagaaaaat gattcaattt
     3241 tttgaaaaat ttgctcgtac agtttttgag cgatacaaag ataaggttaa gtactggttg
     3301 acatttaacg aggtcaattc tgtcttagaa ctgcctttta caagtggtgg aattgacttg
     3361 ccgaatgaag aactttcaaa acaagattta tatcaggcca ttcaccatga acttgtagct
     3421 tctagtcttg ttaccaaaat tgctcatgaa attattcctg actgtaaggt tggctgtatg
     3481 gtcttagcta tgccgaccta tccaatgaca cctaatcctg aagatgtttg ggcggctcat
     3541 gcctatgaaa atttgaacta tttattttcg gatatacatg ttagaggata ttatcctaat
     3601 tatgccaaaa ggtactttaa agaaaatggc ataaagatta cttttatgga aggtgatgaa
     3661 gagttattaa aaaataatac ggttgatttt ctctccttca gttattatat gagtattact
     3721 caggcagcag atccatcaaa atattcatct ggaagaggaa atatcttggg tggtttggtc
     3781 aatccttatt tagaagcttc tgattggggt tggcagattg atccaattgg tttaagattg
     3841 acactaaatc gttattatga tcgataccag attcctttat tcattgttga aaatggtttg
     3901 ggagctaaag atcagctagt gaaggatgag gctggtggtt tgactgttca tgacgattat
     3961 cgaattcaat acatgcaaga acacctttta caagttgcgg aggcgataca ggatggcgta
     4021 gaagtcatgg gttatacttc ttggggctgt attgattgtg tatctatgtc taccgcacaa
     4081 ttatctaaaa gatatggact aatttatgtt gatagaaatg atgatggaag cggcagtcta
     4141 actagatata gaaagaaatc attttactgg tataaagaag ttattcaatc caatggcagt
     4201 atcttgggca atagctcaaa atagactctt aaggtattaa aaagttttca gaaaatttaa
     4261 tcaaaagtat tgacaaagtg attttgatac cgtataatca tctgtaatca gaagaagtag
     4321 taaagcagaa gtcttcaggg agcctgtggt gctgagaaca ggtggcagag ttttatgaaa
     4381 tgggctgatg tgcatttatg tctattttat gacgtcgtta gtcggtcttg ccgtaccacc
     4441 agtactgcct tcgcccgact gcctagtcct aaaatgccct aaattcacaa ggattgtttg
     4501 gcataacata ctttgcgtag actgttttgg ctgagtacga ggcaggtcga cgcagcttat
     4561 actagcggta tagcaaggag agctaacgaa gtaatcagcc aaaacagtca cgtaaatgaa
     4621 cttaaaacaa tgatagttcg gtccgcacac cttacagtgc aactccttgt tagaggagat
     4681 gagatatggg agggttctag acaattccca taagtgaggt ggcaccgtgt cattgacgcc
     4741 ctcgcaggaa gttttttcct gcgggggctt tttccttgtc tttgtagatt gcttttatat
     4801 tttgttacga ttggcttgcc taacttgagt tatgtctgcg cctccgttcc ttatctaaaa
     4861 gcaatctact ttgacaatta ttaacaaaac gaggtaatca tgatgaaacg atggcgatgg
     4921 tgggataata tattgatgac gtagaaattg tatattgtgt attttacgag gagaatgaat
     4981 atgttgaaaa ataaaaattt acttgctaca attgttgccc ttactgttat ggtagttgct
     5041 gccctgtttt tgacgcaaaa agaacagaac aattcaacga atagcacaga aaaagtcaaa
     5101 attggggtcc tccaatttgt gacgcatgat tcactagacg aaatttacaa gggaatcaaa
     5161 gcaggacttg aagaaggtgg ttataccaca acggataatt tagaaattga ttttatgaat
     5221 gcagaaggtg atcagtcaca ggttcaaacc atgagtaaaa aattggtgga caatggcaat
     5281 gaattattga ttggtatcgc aacacctgct gcacaaagtc ttgccaatgc aaccacagaa
     5341 ttacccatta tcatgggggc tgtaacagat ccagtcggag ccaacctggt gacggatttg
     5401 aaaaatcctg gtggaaatat tacaggggta tctgaccaaa caccagtagc agacgcagtt
     5461 tctctcatta aagaaattac accagacgct aaaactatcg gtgtcctcta ttcttcaaat
     5521 gaggacaatt caaaaattca agtagcggaa tttaaggcag cagcagaaga ggctggctat
     5581 actgttcttg aatatgcagt tgcttctagt aatgaaattg cagcgacagt agaggtcgca
     5641 agtagtaaag cagatgttct ctttacacca gtagacaaca cagttgcctc agcattttca
     5701 actgtcgtat ctgtggcaaa taaaaccaaa actccgattt tcactagcgt agaagacatg
     5761 gtagaaggtg gaggtatcgc atctgttacc cttagccaat atgacttggg tgtggcaact
     5821 ggtaagatgg ctgcgaaaat tcttgatggt gccaatccag cggatacacc tgtacaaatc
     5881 tttaacgagg gtaccgttgt tgtcaaccaa aaagttgcta aagaattagg aattaccttg
     5941 tcagatgatg tgattagtaa agcaagcaag gttattgaat aagagataag agaaaaggaa
     6001 aaatatgatt gtatcaacag tttcacaggc tcttttatgg gctgtactag gtttgggaat
     6061 attcgttacc tttcggattc tgaattttcc tgatatgacg acagaggggt ctttcccgct
     6121 tggaggagcg gttgctgtta ccttattgac gcaaggagtt catcctatct tggctactct
     6181 agcagcagtt cttgttggct gtttggcggg ctttgtcaca ggcttgcttt ataccaaggg
     6241 gaaaattccc actctcctag ctggtatctt ggtcatgtct tcctgtcact ctgtcattct
     6301 atttatcatg ggtagggcaa atctaggctt actgaatacc aaacgtttac aagatttcct
     6361 tcctttttct gagcaagtca atggtctctt gctaggtcta ggtagcctag cggtggtgat
     6421 tggtgccttg atgttcttcc tctatactcg ctttggacag gcctttattg caaccgggga
     6481 taatccagat atggctcgca gttttggtat caatacaagt cgaatggagt tgctaggtct
     6541 tgttctttca aatgggatca tcgctcttgc aggtgccttg attgcacaac aagaaggcta
     6601 tgcggatgtg tcgcgtggta ttggtgtcat tgtggtcggt atggctagtc tgattatcgg
     6661 tgaggtaatt tatggtaacc ttactatgtt agaacgattc ttggccattg ttgtcggagc
     6721 gattttctat cagttcttaa ttttggtggt catttccctc ggtatcaata ccagctacct
     6781 ccgtatcttc tcggccatga ttctggcaac ttgcctcatg gttcctgagt tgaaaaataa
     6841 acttctgaaa ggagccagtc tgtcacgatg aaagcaattg ttgaattaaa aaatgccacc
     6901 aaggtggtga caaacggttt tgatgaagaa cgtgtgattt tggataatgt caatctgacc
     6961 atttaccagg gtgattttat taccattttg ggtggaaatg gggctgggaa gtcaaccctc
     7021 tttaatgtca ttgctggaac cctacccttg accagtggtt cagtccatat tcttggtgag
     7081 gatgtgacca attggcctgc agaaaaacgt gctaagtatc tggcacgtgt tttccaagat
     7141 cccaaaatgg gtacagcgcc acggatgacg gtggcagaaa atctactgat agctaagtac
     7201 cgtggcgagg ggcggggctt agtgccacgc agattggccc aacagacgga agaatttgcc
     7261 cagcttttgc cgagagtggg aaatggtttg gaaaaacatt tggacacgcc agcagggctc
     7321 ttatcaggtg gtcaacgcca ggcattgagt ttgttgatgg cgagtttgaa acagcctgaa
     7381 cttttactct tggatgagca tactgcagcc ctcgacccta aaaccagcca atccttgatg
     7441 caattaacgg acgagttgat tgagaccaag ggaatgacgg ccctcatggt cactcaccag
     7501 atggaagatg ctctgcgtca cggtaatcgc ttgattgtca tgaaaaatgg tcagattatt
     7561 caggaccaaa cggctgaaga aaaatccaag atgaaactgg aagattatta taagttgttt
     7621 gattaagaac ctgtgtggat agttcgcaac ttccaaccaa gtttggtttt ggctaaaact
     7681 gaatcttata tcaaacagaa cacttgtgaa tacaggtcta aagtctggag taatccaggc
     7741 ttttattatc ctttgaattt ttagttaaaa agtagtataa tatactaaat atgtcaagag
     7801 gtgctgtcat ggataaattg gtttttgaaa gcttagctga cttgggaatg gactacatcg
     7861 ttgtagagca tccaccagct ctgacaactg aggaagcaga ccgttacatt gaagggttag
     7921 aaggagtacg gaccaagtcc atgtttctga ctaataagaa aaagactgca ttttatttac
     7981 tgatcatgga tgaccagaag cagctggata tggaccggtt tcgtgatttg gtgggagcca
     8041 accgcattcg gatggcctcg agtgatagct tgatggaaaa aatgcacttg cctgcgggtg
     8101 cggtatctgt ttttggcttg ttacataatg ttgataagga tattcaagtc ttttttgata
     8161 aagaaatcct ttctgaaccc attctaacct tccaccccaa tgttaatacg aaaacgattt
     8221 ttgtaaaaac agaggatgtt ttgcgttttg tagaagagat tggcttttca gcaaagattg
     8281 ttgacttggg gtaacaaaga tgagaaaatg tttagctatt tgtagtctgt tgtgttgtct
     8341 ttttttggta ggatgtcgga caggagcagc ttatcaggca gagattgaac cgatggaaca
     8401 atcagaattg tatacggaaa aagagattga ggcggctatt cttgtagttc aagattactt
     8461 tgatcaccat tttaacagtt gtaaattgct gaccatcggt tacagtggtg ataatgagaa
     8521 ggaatttgat gagtgggcgg agcactatgg tgcagaggaa gctattatcc taacttcgtc
     8581 ttttaaggta gcagctgagg gggcagagcc caccttagag cctaatagta cccatacgga
     8641 ttggaaatgg attttagtgc ggaatgttgg tggtaagtgg gaacataagg gacatggtta
     8701 ctaatgtata tgtagaactt cgttgatttt cagcggagtt ttttgtaaat tttcttgaaa
     8761 aaatgtataa tagaagcgat agctatttag gtatttctat ttaaaagttg cgttgatggt
     8821 tgaatataat tttgaaccaa agtgtgtctt ttgcaaatag agctccgaca tagcagactg
     8881 taattcgact tggaactccc aaggaccgtt ggtaagaaaa ataaaatgga cacctgtggg
     8941 atgtccaaaa ggagtaaaga tgagtacaat taaaattatg gctcttgggg gtgtgcggga
     9001 aaatggaaaa aacctgtaca ttgccgaagt gaatgaacat atttttgttt tggatgcagg
     9061 ggcaaagtat cctgagaatg aacagttagg tgtggatgta gtcgtcccaa atttcgatta
     9121 tttggaagaa aataagcatc gtgtagcagg ggtcttttta tctcacgggc atgcagatgc
     9181 tatcggagcg cttccttatc tcttggagaa agtgaaagtg ccagtatttg gttcgcactt
     9241 gactatcgaa ttggctaagc tacttgtcaa ggggaataat gctactaaga aatttaatga
     9301 tttccatgtt atcaatgctg aaactgaaat tgatttcgga gattcagtgg tatctttctt
     9361 tcagacgacc cactctattc cagagagttt aggaattgtc gttaagacgg atgagggaaa
     9421 tattgtctac acaggtgact ttaagtttga ccaggcggca gataagtttt atcgtacgga
     9481 ttttgggcga ttggctgaaa tcggtaacga aggtgtgttg gccctcttgt cagactcagc
     9541 taatgcagat agcaatgttc aagtagcgag catgcatgag gctggggagg aaattctcaa
     9601 tacgattgct gactgtgacg ggcgtgttat tgtggcagca gttgccagca atattgtacg
     9661 tattcaacag atttttgacg cggcagaagc aactggtcgt cgtgtcgtgt tgacaggaca
     9721 tgatgtggaa aacattgtcc gaacagcgat tcaattgaaa aaacttcgtt tggtcagcga
     9781 acgcttgttg gtaaaaccaa aggatatgaa caagtatgaa gaccatgaat tgattatttt
     9841 agaaactggt cgtatgggcg agccgttaaa tggattgcgt aaaatgtcta tcggtagaca
     9901 tcgctacgtt gaaatcaaag aaggtgatct agtttatatt gttaccactc caagtatttc
     9961 aaaagaagcg gttgttgctc gtgtggagaa cttgatttac aaggctggtg gtaccgtaaa
    10021 atctatcaca aagaatcttc gcgtctctgg gcatgggaat gctcgtgatt tgcagctcat
    10081 gctcaacatc atgaagccta aatatctttt cccagttcaa ggggagtatc gtcaattgga
    10141 tgctcacgct aaggctgcgc ttgaaattgg tatgtatcca gaaaacatta tcatcgttaa
    10201 gcgtggggat gtcatggctt ttgaagaggg ggattttgtc catagcggag cggttcctgc
    10261 tggtgatgtc atgattgacg gaaatgccat gggcgatgtt ggaaatatcg tccttcgtga
    10321 ccgtaaaatc ctatcagaag acggtatctt tatcgtggct atcactgtca accgccgtga
    10381 gaaaaaaatc atttctaaag ccaaggtcaa tactcgtggt tttgtctacg tgaaaaagag
    10441 caaggacatc ttgcgtgagg catcagaatt ggtgaataca acggtggaaa attactttac
    10501 aaaggatagc tttgactggg cagagcttaa gagtgctgtt cgcgatgatt tagcaaaatt
    10561 cctctttgac caaactaaac gtcgcccagc tattttgccg gtaattatgg aagtcaagta
    10621 agctgattta tatacataag aagagccgag ggaaactcag gctctttacc ataaggagaa
    10681 gatttatggc aataatgaaa attgaatacc attcagaagc tctagatatg tctagacagg
    10741 ttacggtttt atatccagat cgaaatcgtg tggaaaatcc cgatgacaac gatattcctg
    10801 tcctatatct tttgcacggt atgggaggaa atcaggattc ctggctgaat cgttctacag
    10861 tggaacggtt ggttcgttat accaatctta tcgtggttat ggtcaataca gataaaggtt
    10921 ggtataccaa taccacttac ggtatgaatt acttcgatgc cattgcagta gagttgcctc
    10981 aaattctcaa acgatttttc ccaaatatgt ctgacaagcg ggagaagaat tttatcgctg
    11041 gtttgtctat gggtggttat gggaccttca agattgccat gatgaccaat cgtttttcac
    11101 acgcagcttc gctttcaggc gcattgtatt ttgattttga taatccagcg gcagcagaat
    11161 tgggaagtct ttcgtattgg caaggagtat ttggtgacat ttctgataaa cagaatccga
    11221 ataatttgtt agaaattgct aaacaatccg ataaaaagac taagttttat gcctggtgtg
    11281 gtgaggaaga ttttctcttt gaagggcatc aaaaggcagt tggggagttg aaagagctgg
    11341 gatttgatat agaggcaagt ttcggacctg gtaaacatga gtggtactac tggaatcagc
    11401 agattgagaa ggtattggct tggttgccaa ttgatttcaa attggaagaa agactgtcct
    11461 agtttttaag aaaagtttca gaaattatgg ctatactaaa acctatttct agaaagaggt
    11521 atagtctatg aaacttattg gaaatattct acggtggatt tggcggacat tttggggtct
    11581 gatttggtta tcaatgatgt tattggcttg tggtctaggt ctattattct attttcaaca
    11641 ggaagcagct cctcagatgt tacaaactct agctcaagaa gtgcaattga tggtcaaagg
    11701 acagtctgaa gtgacgattg aggaaggtgt taataccatt aagcacctga cgactgatac
    11761 ggtcaataca gctgatcatg gtcgatggga aagcaatact gcgactgttt acattgaaac
    11821 ccagaatcca acatttgtag ctgcctatga aacagccatt gcaaattgga acgcgacagg
    11881 ggcatttact tttgtgatga caagtgatcc aaatcaggct gatattattg ctactgagat
    11941 gaatgatgga aatacccagg cagcaggtga ggccaattca acgactaatt tattgacgaa
    12001 ttattatagc tcggtaacgg tgcgtctgaa tagtttttat ttattaaacg accaatatgg
    12061 ttatgatatg gatagaatta tccatacagc tgagcatgaa ttgggccatg ctattggcct
    12121 agatcatgaa gatagtcaga cctctgttat ggaatcggca ggttctaatc atggtatcca
    12181 gcaggcagat attgatgcgg tccttgcctt gtattcagaa tagaagggaa aatatgcttc
    12241 gaacaattac aaacacaata aaacgttatc ctgagcaagc tctgctcttt ctctataatg
    12301 ctgggatttt tgcatggatg cagtctacca gtcattcgat tatggaacaa atcggtatag
    12361 atagcaactg gtttgataaa atccccgaac ctatcaaggc ctggacaggt gccagtctag
    12421 agagtatgca aaccttactc aattcttctg cttggggatg gctgattgta tctatgatat
    12481 tgatgttggt catccgcttt gttaagggct tgattaagtt tgtcatcatg ctcatcatta
    12541 ttggtggtgg tctttatctg ctctggcaga ataaggagct tgttcaatcc ttggtataaa
    12601 tagaggaatc aaatcagcct tgtgctgatt tttttggtat aatattttca tgattattct
    12661 aagtggaaac aagattgaac gctcttttgc gggcgaagtt ttatttaaca atatcaacat
    12721 tcaagtggac gagcgggatc ggattgccct tgtcggaaaa aatggggcag gcaagtctac
    12781 tctgcttaaa atccttgtcg gagaagagac tgcgacaagc ggagagattt caaccaagcg
    12841 tgatttgtca ctgtcttatc tggcacagga cagccgtttt gagtcggcaa ataccattta
    12901 cgatgaaatg ctccatgttt ttgacgacct gcggacgacg gaaaaacgcc tgcggtctat
    12961 ggaagagcag atgggcagcc tatctggtag cgacctagat caactgatga aaacctacga
    13021 tagtctgtca gaggaatttc gtctggcagg tggttttagc tatgaggcgg atattcgtgc
    13081 cattttgaac ggctttaagt ttgaccagac catgtgggac atgaaaatct ctgaactctc
    13141 aggtggtcag aatactcgac ttgcactggc aaaaatgctt cttgaaagcc cagaactctt
    13201 ggtcctggac gagccgacca accacctgga catcgacacg attgcttggt tagaaaacta
    13261 cctagtgcat tacaagggag ccttgattat cgtcagccat gaccgctatt tcttggacaa
    13321 ggtggcgaca ctgacactgg acttgaccaa gcattccttg gatcgctatg tgggcaatta
    13381 ttctcagttt gtcgagctca aagagcagaa gttgcaaaca gaattgcaaa actatgaaaa
    13441 gcaacagaag gaaattgcca aactagaaga ctttgtccag aaaaatattg tccgtgcttc
    13501 gaccaccaag cgcgctcagg ctagacgcaa gcagttggaa aagatggagc gactggacaa
    13561 gccaacaact ggtcagaagt ctgctaacat gaccttccag tcggacaaga cttctggcaa
    13621 tatcgtcttg acagtggaaa atgctgcggt gggctacgat ggagatatcc tttctcagcc
    13681 catttctatt gaccaacgga aactagatgc cattgccatt gtcggtccga atggaatcgg
    13741 aaaaactacc ctgctcaaat caatcatcgg agctttgcca tttatcaaag gggaagccaa
    13801 gctaggtgcc aatgtggaag tgggttacta cgaccagacc cagtcagccc taacaccttc
    13861 caatacagtc ttggaggagc tctggtcagc ctttccgact acgcctgaag tggagatccg
    13921 caaccgcctt ggagccttcc tcttctcagg agatgatgtc aaaaagtccg ttgccatgct
    13981 gtcgggtggg gaaaaggccc gtctgctcct cgctaagcta tctatggaaa acaacaactt
    14041 cctcatcctc gacgagccga ccaaccacct ggacatcgac agtaaggagg tcctggaaaa
    14101 tgcccttatc gactttgacg gcaccctgct ctttgtcagc cacgaccgct atttcatcaa
    14161 ccgcgtcgcc accaaggtgc tcgaaatctc ggaaacgggc tccacgctct acttgggcga
    14221 ctatgactat tatttggaga aaaaggcaga gctggaagta gaagcccagc ctgaccagct
    14281 agaaagtact agccaatcag ccggagccat ggactaccaa gcccaaaagg aaaaccaaaa
    14341 agagcaacgc aaactagctc gccgcatcga gcaaatcgag gcagaaatcg agacaatcga
    14401 aaatcgcctg agcgagctca accaagccat gttagaaacc aacgacattg gccagttgac
    14461 cgattaccag aaagaaatcg accaactgac cagccaacaa gaaagtctta tggaagaatg
    14521 ggaagaatta tctgagcaga tggggtaaga aataagatga tccaacagaa tacagaaaca
    14581 ctcgaagata acttacgatt taataaatta tccaaactga ttcagacaaa attgtcccaa
    14641 tattttgaaa cctatccttc agctgtccag tgccaattag tttgttttga tagagatgaa
    14701 actcgtagaa aagtccttag ctatgacatt tattccgatt ttgataagct cttctgggta
    14761 gagtcaatag caaagcctat ttctagttat tcctacggac atcaaattga taaaaaagat
    14821 atagacaaac tagataggga gtttatcttg gatacttttc ttggaataga tgaagaaaga
    14881 ggatagattt tcatgaccaa acaccaacgt ttccttaata gcgaccaatt ttttgcctgt
    14941 ccacattgtg ggcaggctct tggtcttgag ctcaacagcc tccgctgtcc caaccgccac
    15001 accttcgaca tcgccaagca gggctacgtc aatctggcac cccaggtcaa gcagtctgct
    15061 aactaccaca agtctagctt tgaaaaccgc caggcctttt tagaggcagg ctattacgat
    15121 catctctacg aggctttgga gaggaaaata gcagagctgg gcttgcggtc tgtcttggac
    15181 atcggctgtg gagagggctt ttattcccgt aagttagccg agaaaatgga cttggacatt
    15241 cttgcttttg atatttccaa ggattccatt ctcttggcag ccaaatctga caggaccaag
    15301 tcggtcaaat ggtttgtcag tgacttgacc aagttaccta ttcaagataa gaccattgac
    15361 ggcatcttgg acatcttttc cccagccaat tatcaggaat ttgccagagt gctgaaagct
    15421 ggtggggcaa ttctaaaatt agtcccaggc cccaatcacc tcaaggagct ccgccattta
    15481 gccaaagacc aactccgcaa ggaatcctat gataaccagg atattgtgga ccatttcaag
    15541 tcttacctgg gacaggtgga gcaagtgcta gtcagtcgaa ctctgccgat tacagccgcc
    15601 catgctcagg tcttggcaga catgacaccc ctctttttcc aagtagacca gtccaagttg
    15661 gatttgagcc agttgaccga gattacgatt gagggagtgc tcttgattgg aactatataa
    15721 aaa
//
LOCUS       DASGCC010000044        15658 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.044, whole genome shotgun sequence.
ACCESSION   DASGCC010000044 DASGCC010000000
VERSION     DASGCC010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15658
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.044"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(110..1261)
                     /gene="recA"
                     /locus_tag="U1404_000936"
     CDS             complement(110..1261)
                     /gene="recA"
                     /locus_tag="U1404_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEM5347904.1"
                     /translation="MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLG
                     ERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGG
                     IAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
                     AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG
                     NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEA
                     VVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIF
                     DEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED"
     gene            complement(1313..2494)
                     /locus_tag="U1404_000937"
     CDS             complement(1313..2494)
                     /locus_tag="U1404_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEM5347905.1"
                     /translation="MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGD
                     NEQRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQILATFLGRNLVFDELAMAKLDRF
                     FASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
                     FSESLLPLLSQSQQQLYSRILRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTL
                     RLSTKATSQEEANLRLNQLEEEILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIA
                     IVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEADCIRQELQADLGLA
                     VSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNT
                     L"
     gene            complement(2531..3100)
                     /locus_tag="U1404_000938"
     CDS             complement(2531..3100)
                     /locus_tag="U1404_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEM5347906.1"
                     /translation="MSRCAWVNLNNPLYIAYHDEEWGKSLHDEQSLFELLCLESYQAG
                     LSWEIVLNKRQAFRSAFFNYDIQKVAAMTDSELDSLLTNPDIIRHKAKLYATRANAQA
                     FLRVQEEFGTFDTYLWSWVDFTPLDNPIKSFRELPTKSELSERLSKDLKKRGFKFVGP
                     VCIYSYLQAAGLLNEHEETCEIGKKLRTN"
     gene            complement(3354..3944)
                     /gene="ruvA"
                     /locus_tag="U1404_000939"
     CDS             complement(3354..3944)
                     /gene="ruvA"
                     /locus_tag="U1404_000939"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEM5347907.1"
                     /translation="MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGKVQQEV
                     TVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIE
                     QKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
                     ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK"
     gene            complement(3983..5920)
                     /gene="mutL"
                     /locus_tag="U1404_000940"
     CDS             complement(3983..5920)
                     /gene="mutL"
                     /locus_tag="U1404_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEM5347908.1"
                     /translation="MSHIIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIE
                     ISVEEAGLKMIQITDNGEGIAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPS
                     IASVSHMIIETATADSAHGLHLEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKY
                     VRSQQAELSHIVDVVNRLSLAHPEMAFALVNEGRELIRTAGTGKLRQAISGIYGIASA
                     KKMVEIEAEDLDFQISGYVSLPELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKL
                     MVGRFPLAVISIEIDPYLADVNVHPTKQEVRISKEKELMTLIREAISQALKEQDLIPD
                     ALENLAQSSTRPKVKAEQGTLPLREPKIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEI
                     VESPAENKPTSVQFAERQSVESEDQEHPNLSAKELAKLADKLDREATSTFPELEYFGQ
                     MHGTYLFAQGKTGLYIIDQHAAQERVKYEYYREKIGQVDNSAQQLLVPYIFEFPQNDA
                     LDLVHKMDALRQVGVNLEEYGSNQFILREHPIWMKEEEIESGIYEMCDMLLLTDQVSI
                     KQYRAELAIMMSCKRSIKANHALDDYSARDLLRQLSYCQNPYNCPHGRPVLVHFSKSD
                     MEKMFRRIQENHTSLRELGKY"
     gene            complement(6038..7561)
                     /locus_tag="U1404_000941"
     CDS             complement(6038..7561)
                     /locus_tag="U1404_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol oxidase"
                     /protein_id="HEM5347909.1"
                     /translation="MTELDVVSDVVTHPEETYRRSRRASRRQQVQLNGEFHERVLKTK
                     YWPALVWSLVLSVFSVANPLLMPFATNMQTQNLYAGMAMANGQIPYGDFFGTSGLLFY
                     LLAFLGHLGGTFIIFGILQFIALLIAGVYFYKVVAYFSQSEHLATSSSHWFYVFIFAL
                     GFGGMYAEMFALPFLLTSVWFLVRYFENAVRDEAFILYGIDAALVFLIYPKSLILWLV
                     AGLVLFIFNIQHRQVTRGIYQLLATIFGFLLILYAVGYYAFEAQILGTAIQQTFLYNL
                     QLDFHHSYLYLALAIVSVFLLLSGFFKSFIQMVFSFKQGRHTYIKVLLLLTFLVQCVF
                     IIGNANFQWSQLILLLPYGFAMSVVYLRDEDVEDYRGYLRRQFFLPLAICLGIIAQPA
                     YLYLVQGDLRTDREQVANYIGEQTKDSDKIYVWDNSASIYLSSQRLSAATITTAEPYL
                     NTDDNKNSLMYNINKNEAKFVVVNKNLPILDEIKTNLESQYQSVQTTDYFTIYQKNE"
     gene            complement(7730..8971)
                     /locus_tag="U1404_000942"
     CDS             complement(7730..8971)
                     /locus_tag="U1404_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM5347910.1"
                     /translation="MLENWLNTKQGQVFHYKMEKIEYALELLGNPQFAVPVIHVAGTN
                     GKGSTIAFMRQLFQTHGLRVGSFVSPHMVSVHDRICIDSQPISDHDFQHYLQKVYDLE
                     QEVATRYEPFRYFEVMVLIMFLYFEAQQPDVALVEVGIGGLLDTTNVVAPALSVITSI
                     GMDHQDLLGSTLGEIAEQKAGIIKENVPVVLGPLCPETTAICRHIAQDKQASVYQFGQ
                     EFTYKAGQFSNADLELSELVLGLAGHHQEENAAVALQTFLLYMTNIQKDIQPQLIQQA
                     LAQTSWPGRLELVAQEPKIYLDGAHNVPAIERLIEFIQVQEEPVTILFSALRRKDFQE
                     MLELLDEKLPHTALVLTSFAYDGALSEENRQGRDYVENYRQFIEAWQSSKQGILIVTG
                     SLYFISEVRRIFKNEYLFANK"
     gene            complement(9168..9559)
                     /locus_tag="U1404_000943"
                     /pseudo
     CDS             complement(9168..9559)
                     /locus_tag="U1404_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936152.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(9609..10157)
                     /locus_tag="U1404_000944"
     CDS             complement(9609..10157)
                     /locus_tag="U1404_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347911.1"
                     /translation="MTLNTFSDTANTFTFNYTFKDHDTAQVAGHALMGYMTGTFEQPG
                     IEVYYDNDKVGGDYNRLAVEYVADTELTETFRRICDSFQGYYNDPEAETDVEDQYRLE
                     RVEQLKQSETFDSLLEKVVIYELELLDYAERLLSDDPIPTDTEMAYMTLNLIGGKGVG
                     LFKSLDEDNEYSGLAYYNAEAE"
     gene            complement(10235..10693)
                     /locus_tag="U1404_000945"
     CDS             complement(10235..10693)
                     /locus_tag="U1404_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347912.1"
                     /translation="MKEQEFFEQAEKELEELNQHRADFMTMDFKELNNADYINFLNIG
                     NRIFSEDTTLNVYELYKHPDTRAKCFATIAKIAYHVNNMFQTEERMRTMIDSLELHFQ
                     NMVKKLVHQTDSDKLAELLLEIKKDNPNMTAEQESQFIRDIAVSGLLAMQ"
     gene            complement(10706..11521)
                     /locus_tag="U1404_000946"
     CDS             complement(10706..11521)
                     /locus_tag="U1404_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain protein"
                     /protein_id="HEM5347913.1"
                     /translation="MAKTKIYFWLKIDKKFFDNIFIKRLKTIPGGYTMTVIYIRLMLE
                     SLESDCILYYEGYFENLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDKNAELPQA
                     KAMVMSETNWASYKREQRQNKERLDNVQKSLTNSNSCPTEIEIEKDIKKDIDINIELE
                     VDNKKTATDTNIYDYYQQRIGSLDGYQYEKLKDYLDIDKLEPELVKRAIDRGADNSKR
                     NFGYINKILKNWAQNGIRTIAQQDEEQRQFVDSKANKQKSNDWVPDPNYPPPY"
     gene            complement(11508..11792)
                     /locus_tag="U1404_000947"
     CDS             complement(11508..11792)
                     /locus_tag="U1404_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM5347914.1"
                     /translation="MRLELTAQSEIDLKTGILELIENYLEAREQTPPRLLGLITAQQV
                     KDELGIKDKTLKRWEDNGLRRYQPPLEDTRKIFYRVSDILVFLGVENGKN"
     gene            complement(11782..12120)
                     /locus_tag="U1404_000948"
     CDS             complement(11782..12120)
                     /locus_tag="U1404_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347915.1"
                     /translation="MTENRLPPHLYKVFKLLPLGMELPITGADMERLTGLDIRTIREN
                     IRQLIVDYGIPVCGGRDNKQGGYYIPQNETERLAGVLPLQRQYDQEHKRIHALLTADL
                     EDWRKYRDEA"
     gene            complement(12117..12266)
                     /locus_tag="U1404_000949"
     CDS             complement(12117..12266)
                     /locus_tag="U1404_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347916.1"
                     /translation="MLTFRELERIAETILKHTTPEETQCYLDMDHDSKLLWIKYKIAS
                     LEVQA"
     gene            complement(12278..12481)
                     /locus_tag="U1404_000950"
     CDS             complement(12278..12481)
                     /locus_tag="U1404_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347917.1"
                     /translation="MQEMTIETALTLIAIFTPLNLYLWFGVGLGTYQLDIEPKIKTEG
                     KDTRPLKNERYGAYIQLAGKHYN"
     gene            complement(12469..12870)
                     /locus_tag="U1404_000951"
     CDS             complement(12469..12870)
                     /locus_tag="U1404_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347918.1"
                     /translation="MKDNNRETIIHFEMSNQEYAPVKNAISEELEAVIRKVYQLDHET
                     GWTLHYLTEIMLNHFHEDVARVQYGDLTPIECSLNSITHRVESAKVALLKAGYEDKIE
                     VGNPMWYLKLILQDFEHMKKLAKKEVKKCKK"
     gene            complement(13334..13960)
                     /locus_tag="U1404_000952"
     CDS             complement(13334..13960)
                     /locus_tag="U1404_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM5347919.1"
                     /translation="MELVYMDGRKEPYTLSSIVAECANISHHAVQEHIRKQKDRLERF
                     GKVSFQMRPLPSGQQAKDYILNEQQATLLITFLKNTEQVANFKENLVKAFFEMRDELA
                     QFRYQRALEKPKRKALHEAIETWQEAPKHAHSTVTNLLLKGTTGMNKRQLMAHRGGHN
                     GIDSLTSQELIRYQALEDMAIAMINLGMTYQDIKNMVFRPLKNAPQGA"
     gene            complement(13973..14719)
                     /locus_tag="U1404_000953"
     CDS             complement(13973..14719)
                     /locus_tag="U1404_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HEM5347920.1"
                     /translation="MRRNYSKVIEEMRTIHGLNLVAIGQRIGTDPRTVGKWAQGKHQP
                     NKDSRKKINNLYREVKQSMTTQTTIEPFEDFYDWSKMKKKKPTTEVIATQQFGNKSFE
                     IYGNKDNPLFIAVEVAEMIEVQNTTDLLKRIDEDEKLTYVISRAGQKREVNMLTEFGL
                     YEVLFQSRKPKAKEFKKVVKNILKEIRVNGYYMQGELIQDQPTQSAIELNSDMAYIKN
                     RLAELQSMTTMADIKIGLAKTYRIAELMED"
     gene            complement(14738..14964)
                     /locus_tag="U1404_000954"
                     /pseudo
     CDS             complement(14738..14964)
                     /locus_tag="U1404_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195665.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            15118..>15658
                     /locus_tag="U1404_000955"
     CDS             15118..>15658
                     /locus_tag="U1404_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001107589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5347921.1"
                     /translation="MAKNSPQDIKNREYFSANLNRIMKEKGVRQIDIHNDLDIPKSTI
                     TGYVKGRSLPTSGNLQKLADYLNVKKSDLDSRFSNNDVYKEFLLMLEKQLEEKKYLVN
                     SVSKEKIFQKVKERERRDKELIERVKGMNRSVKPEEFLSTITESLEEYNPKNDYGLLM
                     DLALKTSSILFWLDIVFQKR"
BASE COUNT         4203 a         3495 c         2942 g         5018 t
ORIGIN      
        1 aaaaaagtct ggaatctcca gactttttcg ttcttatact aaacaacttc gtacacacct
       61 ataacagata tgcacaaata gttcaatatt aaatctattt tgttaggaat taatcttcta
      121 attcaatacc gccatcaaga tctaggataa catcttggat ttcttccgca acaacaggag
      181 cttcttcggt cgcaacttct tcaactccat ctgcttcaat caagccataa tgaacacgta
      241 tcttgcggtc aatttcatca aagattgctg gattatctgc taagaatttc ttagcatttt
      301 cagaaccttg gccaattttt tctccattat atgaatacca agcacctgct ttttggatga
      361 tgccgaggtt actaccaatc tcaatcaatt cacctgtgcg agaaattcct tcaccgtaca
      421 tgatttcaac aacagcttct ttaaatggtg gcgccacctt gttcttcaca atcttcacct
      481 tggtttcctt accaacgttt tgatctttct tgtcgcctgt ccctttgatt tgtgtgtttc
      541 cacgaacatc catacggaca gatgcataga atttaagcgc acgtccacca ggtgttgttt
      601 cagggttacc aaacatgaca ccgacttttt cacgcaactg gttaatgaaa atggctaccg
      661 tcttagtttt gttgatggat gctccgagtt tgcgcatagc ctgactcatc atacgagcct
      721 gcagaccaac atgactatca ccaatatcgc catcgatttc tgcacgtggt acaagggctg
      781 caaccgagtc aacaacaacc aagtcaaccg caccagagtc gatcagcttg cctgcaattt
      841 caagaccttg ttcccctgag tctggctgtg acaatagtaa ctcatcaata ttgacaccaa
      901 gagctgctgc ataggctgga tccaaggcgt gttccgcatc gataaaggca gcaataccac
      961 catctttctg ggcttgagct actgcatgaa gggcaacagt tgtcttacct gaactctctg
     1021 gaccataaat ctcaatgata cgacctttcg gatagccacc cgctccaagc gcaatgtcga
     1081 ttgacaaact acctgagctc atgacttgaa ctttttgttc agcacgctca ccaagacgca
     1141 taacagcacc cttaccaaaa tctttttcaa ttgattttag ggcatcatcc agcgcttttt
     1201 tacgctcatc gccaaatttc tttgtaatat cttctaattt ttttcctggt ttcttagcca
     1261 atgattttct cctcttttct tagtcaaact attatagcaa atatctgcta tttcacaaag
     1321 tgtttcgtac aaaatcccag gcctgcagac aagcaagctg gcgaaggtat tgccacgaat
     1381 aaccacctaa atctatctct ttttgggaaa tacccgaggt cgtagccaaa gtgagatata
     1441 cttttgcaag tacgttgtcc tctgttgatt ccggtttgat aagcacagac acagccaaac
     1501 ccaaatcagc ttgcagctcc tgccgaatgc agtcagcttc ctctgatagc ctgcccgatt
     1561 ctgtccctag ctgaccgatg acttttcctc cgctaaaata cggctgatca gccaaagcca
     1621 ggcttaattc agcttgcaag agaccacctg tcccctgttc gacgatagcg atggtttgtc
     1681 ttttctccgc caaacgagtc gctaccgttt tgaccaaact attgtcctct ccgtaggcat
     1741 agaaatagtc tgccagtttg tcatgttgta agatttcttc ttccaactga ttcaaacgta
     1801 gatttgcctc ttcttggctg gtcgctttgg tggacaagcg taaagtcacc tctccaactt
     1861 ttgcataagg agcaagagtt gggtctgtct gcttgtcgat caagtccgcc aaaacagtca
     1921 ccaactggct ttcaccaatg ccaaaaaaac gtaggatacg cgaataaagt tgctgctgag
     1981 attgggacag taaaggtaag agactctcag aaaacatggc cttgagctca cttggtgggc
     2041 caggcaaaac aatataggtt acaccatctt gctcaatcat accaccaaca gctaaaccag
     2101 ctggattctg tagcgcctga cttccctcca caatctgtgc ctgacgttca ttatttggtg
     2161 tacggacacg acctgggcga ctggcaaaga aacggtctaa ttttgccata gccaactcat
     2221 caaacacaag atttctacct aagaaggtcg ccaggatctg cttggtcaag tcatcctcag
     2281 ttggacccaa tcctccacag agaatgacca ggtcgctccg ctgacgggct acttccagta
     2341 cagacagaag cctctgttca ttatctccaa cagctgtgtg gaaatagaca tcaattccca
     2401 gctctgcaca tttctccgaa aggaactgag cattggtatt aacgatttga cctgtcaaaa
     2461 tctccgtccc aacggcgatt agttctgctt tcatattcct cctctgtcta gggtgcgatt
     2521 gctcgctcat ctaattagtt cgtaatttct ttccaatctc gcaagtttct tcatgttcat
     2581 tcaacagacc tgctgcctgc aaataagaat aaatacagac aggacctaca aacttgaaac
     2641 ctcgtttctt caaatctttg gacaatcttt ctgatagttc acttttggtc ggtagctctc
     2701 gaaaggactt aatagggttg tcaagaggtg taaagtcaac ccaagaccaa agatacgtat
     2761 caaacgtgcc gaattcctcc tgtactcgaa gaaaggcctg agcattggcg cgggtagcgt
     2821 atagctttgc cttatgacga atgatgtctg gattggtcag aaggctatct aactcgctat
     2881 ctgtcatagc cgcaaccttt tgaatatcat agttgaaaaa agcagagcga aaagcctggc
     2941 gtttattgag aacaatttcc caggaaagtc ctgcttggta ggattccaag caaagcaact
     3001 caaacaaaga ctgctcatcg tgaagtgact tgccccattc ttcatcatgg taagcaatat
     3061 aaagtggatt atttagatta acccaagcac aacgggacat agaaactcct tttcgtgaat
     3121 aactaaagtg cgaatcagga taaactgact gaaacacggc tacgatactt tgtaaaattg
     3181 tcaaactgaa tcctaaatat caccgaataa cgcagttgac atctggcaaa aggcttcgtc
     3241 aaaactcgcc ttttacctag ttgtcattgc ggaggtctca caacgaaatt tctagcaaaa
     3301 tttctgttcg gccgtctatt ttgctttgta tcgcttaacg ccttagtatc ctattacttc
     3361 atcagcattt taagggctga cttgatgtag ttttcagcgg tgtcattggt gccttcaaag
     3421 aatttcttga ttttcttgag ttcggctggg cggtaaccaa gggcttccat ggcttccata
     3481 gcttcatcaa gagcgatatt ttcactggat ggtgctactt gttgaacagg acccgcttct
     3541 tcgctcatga caaacttgcc ttccaggtcc aaaatcatct gctgggctgt tttcttgcca
     3601 atcttcggaa acttggtcag gtaggtaatg tttttctgct caatagcacg aacaagtcca
     3661 tcattatcat caacagcaat aatagccaga gccgttgttg gaccaatacc tgatactgaa
     3721 atcagactca gaaagacgga tttttcattt tctgtagcaa atccgtagag caaatgagca
     3781 tcttctcgaa tcacttgatg agtatagacc gtcacttctt gctggacttt tccagagtat
     3841 gcgtagggat tagcaacctg caagatatag cctactcctt gtgtttctac cacaatatat
     3901 tttgcagtta tttttgttaa aattccttta atatagtcgt acatatactt cctttactaa
     3961 tgcgtcaact ttttcaacta tgttaatact tgcccaattc tcgcaaactc gtgtgatttt
     4021 cctgaatgcg acggaacatt ttttccatat ccgatttgct aaaatgtact aagactgggc
     4081 gaccgtgcgg gcagttatag ggattttggc agtaagacaa ttgtctcaat aaatcacgcg
     4141 ccgaataatc atccaaagca tggttggcct tgattgaccg tttacaagac atcatgatag
     4201 ccagttctgc ccgatactgc ttgattgaca cctgatccgt caagagcaac atgtcgcaca
     4261 tctcataaat gccagactca atctcctctt ccttcatcca aataggatgt tcacgcagaa
     4321 taaattgatt agatccatat tcttccaagt tgacaccaac ttgacgaagg gcatccattt
     4381 tgtggactag gtcaagggca tcattctgcg gaaattcaaa aatatagggc accaataact
     4441 gttgagccga attgtcaacc tgtccaattt tctcacggta gtattcgtat ttgaccctct
     4501 cttgtgcggc atgctggtca atgatataaa gtcctgtctt accttgcgca aataaatacg
     4561 tcccatgcat ttgaccaaaa tattctaact ctggaaatgt cgaggtcgct tcccggtcta
     4621 atttatctgc cagttttgcc aattcttttg cacttagatt aggatgctcc tgatcttctg
     4681 attccaccga ctgacgttct gcaaattgaa cagatgtagg tttattttcg gcaggcgact
     4741 caacaatctc ttgcctatcc tcttcgagag gtttgacatc ctcagcgacc acgtctggtt
     4801 ttaagaagaa gtcttgctta atcgtatcat aatagatttt tggctctctg agtggtaagg
     4861 tgccttgctc tgcttttact tttggtcgag tacttgactg agctaaattc tcaagagcat
     4921 ctggtatcaa gtcctgctct ttaagcgctt gactaatcgc ctctcgaatc aaggtcatga
     4981 gttctttttc cttggagatg cgaacttcct gcttggtcgg atgcacattg acatcagcaa
     5041 gataggggtc aatttctata gaaatcactg ccaacggaaa gcgtccaacc atcaacttac
     5101 tgccgtaacc ttccaaaatc gctcgattca gcaaaaaatt cttgatatag cgaccattga
     5161 tgaaaatgga aatgtagttg cggttggcac gagtcaactc tggcaaggaa acataacctg
     5221 aaatctgaaa atccagatct tctgcctcaa tttcaaccat ttttttggca gaagcaatcc
     5281 cataaatccc tgaaattgcc tgacgaagtt tccctgtccc tgcagttcta attaattctc
     5341 gtccttcgtt tactaaggca aaagccattt ccggatgagc tagactcaat cgatttacaa
     5401 catcaacaat atgtgataat tcagcctgtt gactgcgaac atatttgaga cgagcagggg
     5461 tattgtaaaa taaatccgaa acagtaatct gcgtaccaac tggacgacta actggctcct
     5521 ctttctcgat gacaccacct ttggcctcca aatgaagtcc gtgtgcagag tctgccgtag
     5581 ctgtctcaat gatcatatga ctgacagaag caatggaagg cagagcttct ccacgaaaac
     5641 cgagggtgcg aatacgaaac aaatccgatt gattttttat cttactggtg gcgtgacggc
     5701 ggagggcaag cgctacttca tcaggggcaa tcccctcacc gttatccgta atttgaatca
     5761 ttttaaggcc agcctcttca acactaattt caatctgact agcccctgcg tcaatggaat
     5821 tttccaccaa ctccttaacc acactggctg gtcgctcaat gacctcacca gccgcaatct
     5881 ggttggctag tatttctggt agttcaataa tatgtgacat catttctcct acatttcttt
     5941 aataattttt cccgaatgct tatttttaca ttataccaca tatccacttt ccctcctttt
     6001 cccagatagg ctaaagaaaa aatgactgcc tgagcaatca ttcattcttt tgataaatcg
     6061 taaagtaatc cgttgtctga acagactggt actgtgattc taaatttgtc ttgatttcat
     6121 ctagaattgg caaattctta ttgacgacta caaattttgc ctcattttta ttgatgttat
     6181 acatcaagct atttttattg tcgtcagtat tcagataggg ttctgctgta gtaatcgttg
     6241 cggcagataa acgttgactt gaaagataga tgcttgcgct attatcccaa acataaatct
     6301 tatccgaatc tttcgtttgt tcaccaatgt aattggcaac ttgttcacgg tcagttctca
     6361 aatctccctg taccaaataa agataagcag gttgagcgat aatacccaag caaatagcta
     6421 acggaagaaa gaattgacga cgcaaatacc cacgataatc ttctacatcc tcatcacgca
     6481 ggtaaacgac tgacatcgca aaaccatacg gtaaaagaag aatgagttgg ctccattgaa
     6541 aattagcatt cccaataata aagacacatt gaactaagaa agtcaataat aggagaactt
     6601 tgatataggt atgtcttcct tgtttgaaag aaaacaccat ttggatgaaa cttttaaaga
     6661 atccagataa gagtaaaaat acagacacaa tcgccaaggc taaatataga taggaatggt
     6721 gaaagtctaa ctgtaagtta taaaggaaag tttgttgaat agctgtcccc agaatctgtg
     6781 cctcaaaagc ataataacct accgcatata gaatcagaag aaaaccaaaa atggtcgcta
     6841 ataattgata gattcctcga gtaacttggc ggtgttggat attaaaaata aataaaacta
     6901 gacctgcaac taaccaaagg attagacttt ttgggtaaat taaaaatacc aatgccgcat
     6961 cgattccgta gaggataaat gcctcatcac gcactgcatt ttcaaaatag cggaccagaa
     7021 accacacact agtcaaaaga aatggaagag caaacatttc tgcatacatc cctccaaaac
     7081 caagtgcaaa aataaataca tagaaccaat gactagaact tgtcgctagg tgttctgact
     7141 gactaaaata agctacaacc ttatagaaat agactcccgc tatcagtaat gctataaact
     7201 ggaggattcc aaagataatg aaagttcctc ccagatgacc taagaaagca agtaaataga
     7261 ataataaccc gcttgtacca aaaaaatcac cataagggat ttgtccattt gccattgcca
     7321 tccctgcata taaattttga gtttgcatat tggttgcaaa tggcattagc agtggattgg
     7381 ctacgctaaa aacacttaaa actaagctcc aaacaagagc tggccaatac tttgtcttta
     7441 atactctttc atgaaattca ccattcagtt gcacttgctg tctgcgtgat gctctacgac
     7501 tacgccgata agtttcctca ggatgagtaa ctacgtccga gactacatct aattctgtca
     7561 ttttcttctc cttggatttg ctttccttat tatatcaaaa agcactcccg atgtcatttc
     7621 ctatcgggag ttctggaaat ttttgcaaac tgttctaatt ggcgaaaggt atggcgtttg
     7681 ttctcttgaa attcttttaa aaaggctact ttttctgcat gtgtcatacc tatttattcg
     7741 caaaaagata ttcattttta aaaatccgac gaacttctga gataaagtag agagagcctg
     7801 tgacaatcaa aatcccttgc ttgctagatt gccaagcttc tataaactgc cggtaatttt
     7861 caacataatc tcgtccttgt cggttttcct ccgacaaggc accatcataa gcaaagctgg
     7921 ttaatacaag ggcagtatgt ggtaattttt cgtccaataa ttccagcatt tcttgaaagt
     7981 ccttgcgccg aagggccgaa aagagaatgg tgacaggctc ttcttgaacc tgaataaatt
     8041 caatcaagcg ttcgatagcg gggacattgt gggctccatc caaatagatt tttggctctt
     8101 gagcaaccaa ttccaaacga ccaggccagc tagtttgggc aagggcttgt tgaatcaact
     8161 gaggttgaat gtctttttga atattggtca tatagagtag aaaagtttgt agggctacgg
     8221 ccgcattctc ttcttgatga tggcctgcca gacccagaac taattctgac agttccaagt
     8281 ccgcattgct gaactgtcct gctttatagg tgaattcctg accaaattgg tagacagagg
     8341 cttgtttgtc ttgggcaatg tggcgacaga tggctgtggt ttctggacaa agtggtccta
     8401 agacgacagg cacgttttcc ttgataatcc ctgctttctg ctctgctatt tcccctaaag
     8461 tcgagcctag taaatcctga tggtccatgc cgatggaggt gatgacgctg agagccggtg
     8521 ccacgacgtt ggttgtatcc aaaagccctc cgatacccac ctctactagt gccacatcgg
     8581 gttgttgagc ttcgaaatag aggaacataa tgagcaccat gacctcaaaa taacggaagg
     8641 gctcatagcg tgtagcgact tcctgctcca agtcgtagac tttctgtaaa tagtgctgaa
     8701 aatcatggtc tgaaatgggc tggctgtcaa tacaaatcct gtcgtgtaca ctcaccatgt
     8761 gaggagatac aaaactaccg acacgcaagc cgtgagtctg aaagagctga cgcataaagg
     8821 caatggtcga tcccttgcca ttggttccag caacatgaat gaccggaact gcaaactggg
     8881 gattccctag cagttctagg gcatactcaa tcttttccat cttgtaatga aaaacctgac
     8941 cttgtttggt gtttaaccaa ttttctaaca tagccacctc ctacatactg tctagtataa
     9001 caaaaacata ctaagattag tagtgaggaa atctccgacg ggagaaagta ctcactacta
     9061 atcttagtat gtttttgtgt aatcacgcgc ttccatacgt tcgtctattc gtcgttttag
     9121 aaattgccga agtacttcac ctagataacc ctctcaacca atagtattta tcccgcatct
     9181 tcagcaatga ttgctcgtaa ctcttcaacc gtcaaatctt caaatggatt atgaggcgca
     9241 acggatacca taccatcatg ttcaagtttt gtcttagtct taaattcggc atctttccgt
     9301 tctaggtacc attttgacaa gtccacattc ccgtcttcaa tcgcttttga tatatttagt
     9361 ttagctcgtg ttttaacacg ttgcttaagt agttcttttc ggtcagtaaa ctgtgggttt
     9421 ttcttgcaat aatcatacag ggttggtttg catacaaaca agcttcttca tcgcttagcc
     9481 ctcttagaaa tgcttcctct aatttcttta ccgttccttg tgtcattttt gtaggtctac
     9541 cgcctttatt tttcatcatg ttattcctct ctaattttag cacaaaaaga ggcggttgcc
     9601 tctctctgct attctgcctc agcgttgtaa taagcaagcc cgctgtattc gttatcttcg
     9661 tccagtgact tgaatagccc tacaccttta ccgccaatta agtttagtgt catataagcc
     9721 atttccgtat ctgtcggaat agggtcatca cttagcaaac gttccgcata gtccagcaac
     9781 tccagctcat aaatcaccac cttttcaagc aagctatcaa aagtttctga ctgcttgagt
     9841 tgttccacgc gctccaggcg gtactggtct tcaacgtcgg tttctgcttc aggatcgttg
     9901 tagtagcctt ggaaactgtc acaaatccgc ctgaaggttt cagtaagttc agtatctgcc
     9961 acatattcca ccgccaaacg gttgtaatct ccgcccactt tatcattatc ataatacact
    10021 tcaatcccag gttgttcaaa tgttcctgtc atgtagccca taagcgcgtg ccctgcaact
    10081 tgtgcggtgt cgtggtcttt gaatgtgtag ttaaatgtaa atgtgtttgc tgtgtctgaa
    10141 aatgtgttta atgtcatgtc tttattctcc ctagttgttt gataaatttg gaaaagtttc
    10201 cttatttcgg tatcatcggt cacggtgtcg cctcctactg cattgctaat agtccactaa
    10261 ctgcaatatc tcgtataaac tggctttcct gttctgctgt catattcgga ttgtctttct
    10321 tgatttccag tagtagctca gccagcttgt cactatctgt ctgatgtacc agtttcttaa
    10381 ccatgttttg aaaatgcagt tcaagactat caatcatggt acgcatacgt tcttctgtct
    10441 gaaacatgtt gttaacgtga tatgcaattt tggcaatggt cgcaaagcat tttgctctcg
    10501 tgtctggatg cttatatagt tcgtacacgt tcaaagtggt atcttcggaa aaaatccggt
    10561 ttccaatgtt caaaaagttt atatagtctg cattattgag ttctttaaaa tccatagtca
    10621 tgaagtcggc tctgtgctgg tttaattcct ctaactcctt ttctgcttgc tcaaaaaatt
    10681 cttgttcttt catttgcgcc tctttctagt atggtggtgg atagttcggg tctggcaccc
    10741 aatcgtttga tttttgttta tttgctttac tatcgacaaa ctgtctctgc tcctcgtctt
    10801 gctgagctat tgtccgaatg ccattctgtg cccaattttt tagaatctta ttgatgtagc
    10861 caaagttcct ttttgagttg tcagctcctc tatcaattgc cctcttgaca agttcaggtt
    10921 caagcttatc aatatctaag taatctttta gtttctcata ctgataaccg tccaaggaac
    10981 caattctttg ttgataataa tcataaatat ttgtgtcagt agcagttttt ttattatcta
    11041 cttctaactc tatatttata tctatatctt tctttatatc tttctctatc tctatctctg
    11101 ttggacacga gttggaatta gtcaaagact tttggacatt gtccaatctc tctttgtttt
    11161 gtcgttgttc ccgtttgtag ctagcccagt ttgtttcact cataaccata gctttggcct
    11221 gtggtaactc tgcattttta tcttcatcaa tctgtatcag accgcatttt gtaaagtatg
    11281 ccatggtcat atcgatatca tcttccgaca catccaactt caaagccaat tcttccttga
    11341 gattttcaaa ataaccttcg tagtagagaa tgcagtcact ttcaagactt tcaagcatta
    11401 ggcggatata gattactgtc atagtgtaac cgcctggaat agtctttagt ctcttgatga
    11461 aaatattgtc aaaaaatttt ttatcaatct tcaaccaaaa atatatttta gtttttgcca
    11521 ttctcaaccc ccaaaaatac cagaatatca ctgaccctat aaaagatttt cctagtgtct
    11581 tctagtgggg gctggtaacg tcttagccca ttatcttccc aacgtttcaa ggtcttatct
    11641 tttatgccta gttcatcttt aacctgttgg gcggtgatta gccctaacag tcttggcggt
    11701 gtttgctcac gcgcctccag atagttctct ataagctcca gaatgcctgt ttttaggtct
    11761 atttcacttt gtgcggttag ttcaagcctc atctctatac ttcctccagt cttctaagtc
    11821 agcagtcaaa agcgcgtgaa tacgcttgtg ctcctggtcg tattgtcgtt ggagcggtag
    11881 cactccagca agtcgctcag tttcattctg ggggatatag tagcctcctt gcttgttatc
    11941 acgcccgcca caaacgggta tgccataatc aacaataagc tggcgtatat tctccctaat
    12001 ggttcggatg tccaagcctg tcaatcgttc catgtccgcc cctgtgatag gcaattccat
    12061 tccaagcggt agtaacttga aaactttgta taagtgtggt ggtagtcgat tttctgtcat
    12121 gcctgcacct ccagacttgc gattttgtat tttatccaaa gcaatttact atcgtgatcc
    12181 atatcaagat agcactgcgt ttcttctggt gttgtgtgtt tgagaatggt ctctgctatc
    12241 cgttcaagtt ctctaaatgt cagcatggtt tcccctccta gttgtagtgt ttgcctgcaa
    12301 gctgtatata agccccgtag cgctcgtttt taagcggtct agtatcttta ccctcggtct
    12361 tgattttagg ttctatatca agctgataag tacctaaacc aacgccaaac catagataga
    12421 ggttcagcgg tgtaaagatt gctatcaaag ttaaagctgt ttcgattgtc atttcttgca
    12481 ttttttaacc tccttcttgg ctagtttttt catatgctca aaatcttgca agattagttt
    12541 taaataccac ataggattac ctacttcaat cttgtcttca tatccagctt ttaagagtgc
    12601 tacctttgcg ctctcgactc ggtgagttat actgttcaaa ctgcactcaa tcggtgtcaa
    12661 atcgccatat tgaactcgtg ccacgtcctc atgaaagtgg ttcagcatga tttcggttag
    12721 atagtgcaat gtccatcctg tttcatgatc tagctgatat acttttctga tgaccgcctc
    12781 tagctcttcc gatattgcat tctttacggg tgcgtattct tggttagaca tttcaaaatg
    12841 gattatcgtt tctctgttat tgtctttcat gtagttcttg cctctgtttc ttttattgtg
    12901 tctgtgtaat ggcctgtgtg ggctgtctcc gtgagttcaa aagactttgc ttattggttc
    12961 tttactatac gatttctata cctagcccag actattccca gcggttgccc gccccagact
    13021 taccaggtcc ccctgtggtc gtgtaagcct gtgccaaaat aatagccttg ctgtgtgtga
    13081 ttttcttagg gtggtttagg ctgctcttgg tccatggcta cctaatggcg ataccagcac
    13141 ctaatacttt tctgctccag ttttaagggt tagcgccctc tgtatggtca aagtgtccta
    13201 gatatggtat aatctagcta taaaacattt actaaaaccc ttttaataac agcttgcctg
    13261 cttgttaatt ttgttttagt tagtggttaa aaggctttgc tgattggtct cggtaagcct
    13321 ttttttgtta atctcacgcg ccctgtggtg cgttttttag tggtctgaat accatatttt
    13381 taatatcttg gtatgtcatg cctaagttga tcatagcaat agccatgtct tctaatgctt
    13441 ggtatctgat aagctcttgg ctggttaggc tgtcaatacc attatgtccg ccacggtgtg
    13501 ccattagctg gcgtttgttc attccagtag ttccctttag caaaaggttt gtaaccgtgc
    13561 tgtgcgcgtg ttttggggct tcctgccatg tttcaatagc ttcatgtagt gccttacgct
    13621 taggcttctc tagtgccctc tgatatcgga attgtgccag ctcgtcccgc atttcaaaga
    13681 atgctttgac taggttctcc ttaaagtttg caacttgctc ggtattcttt agaaaagtga
    13741 ttagcaaagt tgcctgttgc tcgtttaaga tataatcttt tgcctgttgc ccactcggta
    13801 aaggtcgcat ttgaaatgag acctttccaa atcgttcaag cctatctttc tgctttctga
    13861 tatgttcctg tactgcgtga tggctgatgt tggcgcattc tgctacaata ctgctcaatg
    13921 tatacggctc tttccgtccg tccatgtaaa ctaattccat gcttgtccct ttctagtctt
    13981 ccataagttc agcaattcgg tatgttttgg ccagtccaat tttaatatct gccatggtgg
    14041 tcatgctttg caactctgca agtcggttct tgatgtaagc catgtcagaa tttagctcga
    14101 tagctgactg ggttggttgg tcttgaatta gttcaccttg catgtagtag ccgtttacac
    14161 gaatttcttt caagatgttt ttgactactt ttttaaactc tttggctttt ggtttgcgtg
    14221 attgaaaaag tacttcataa agtccaaact cagttaacat gtttacttct cgtttttgac
    14281 ctgccctaga tattacatag gtcagcttct catcttcatc aatccttttt aataagtcgg
    14341 ttgtattttg tacttcaatc atttcagcca cttcaacagc aataaaaagt gggttgtctt
    14401 tatttccata aatttcaaat gacttatttc cgaattgttg agtagcgata acctcggtag
    14461 tcggtttctt tttcttcatt tttgaccagt cgtaaaaatc ttcgaatggt tcaattgtgg
    14521 tttgtgttgt catactctgt tttacctctc tgtatagatt attgattttc tttctgctgt
    14581 ccttgttggg ttggtgtttg ccctgtgccc acttgccaac tgttcggggg tctgttccga
    14641 tacgctgacc aatagcaacc aagttcagcc cgtgaatggt tcgcatttct tcaatgactt
    14701 tactatagtt ccttctcatt gcttgcctgc tcctttctta ttcctctggc gttagttcta
    14761 tttttttcgt actgtcgcct aaaaaatatc atctaactta acacgataca acttggacaa
    14821 gtctttcaac aactcaaaag ggattatagt actatctttt tcgtactttg agatagtttg
    14881 aaaattcttg cctacttttt tagctacctg tcgcaaggta taacctgcat ttactcgaca
    14941 cgccttcagc gtccattgcg tcatactctt ttagctcctt ccaaaagtga taaaacaata
    15001 gtactattat tttcgtactt agtcaagtgt ttttttacaa aagttttatt tttttcgtac
    15061 cttgtcattt tttatgttat aatcaaaata gataaatgtt gaaacggagg ggattacatg
    15121 gcaaagaata gcccacagga tataaaaaat agagaatatt tttctgctaa cctcaataga
    15181 attatgaaag aaaaaggagt tcggcaaata gatattcata atgatctaga tataccaaaa
    15241 agtacaatca cagggtacgt taaaggacgt tcgttgccaa cgtcaggaaa tttacaaaaa
    15301 cttgctgatt atctcaatgt aaaaaagtcg gaccttgatt ctcgcttctc aaacaatgat
    15361 gtctataaag aatttctgtt aatgcttgaa aagcaattgg aagaaaaaaa ataccttgta
    15421 aatagcgtgt caaaagaaaa aatttttcaa aaggtaaaag aaagagaacg tagagacaaa
    15481 gaattaattg aacgcgttaa aggtatgaat cgctctgtga aacctgaaga gtttcttagc
    15541 actataactg aatcgttgga agaatataac cccaaaaatg actatggttt acttatggac
    15601 cttgctttga aaacgagtag catacttttt tggcttgata tagtatttca aaaaagaa
//
LOCUS       DASGCC010000045        15606 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.045, whole genome shotgun sequence.
ACCESSION   DASGCC010000045 DASGCC010000000
VERSION     DASGCC010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15606
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.045"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            40..1308
                     /locus_tag="U1404_000956"
     CDS             40..1308
                     /locus_tag="U1404_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5347922.1"
                     /translation="MKKLIHNKLFLSSFVADLISNFGDTLYYLALMNHVLLLADTKFA
                     LAMITASETLPILAGLFIGIWADKTKNKLDTILATLVVRVGLYAFVGFLMGFAPALWV
                     VAVVCVINFLSDLAGQYENGLYMPVSLRVVAAEDRETAMAFKMTVKSLLQIAFQASGA
                     ILIGFMSYQNLAFFNAETFLVSLAIMATLRPALAKLLKENPIQEAEQTETEAGLIKGM
                     RNSLKESYQAVQNILVLKASIVTIASLNAIFTALSPLVILNMKEFSDFVIVNAGTTVA
                     LISIFFSVGSILGSSIGMALFKNVSLINLLKFSTLMPVLIFSGFFLHNIYVVLTVIFV
                     TAMTLGVFNPKMNALVLNELPEDKLATVGGGIDAFCQIGMVAGQALVALMVTILSVTS
                     ISLIFLLLSVGLVSYTILVGCKPKNEVAQV"
     gene            1320..2360
                     /locus_tag="U1404_000957"
     CDS             1320..2360
                     /locus_tag="U1404_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HEM5347923.1"
                     /translation="MKLDYRDYRSEIVEKLFIPLIVKEREEPFEADLSQKEKDILKDA
                     LDIRNEVENKLADFRQEVNEVFVWGHIFTILHTLYFYLLDQGQDPKTVEEACQLILTL
                     SQEEVEDAMRTMLASENDGHREKDLSLMELLEKTDKKPAEKWYWSLALRNPLETVERS
                     VDLLNKLLPIYQPYFEGARAEREAFARDFDIEQLYRESKQLAMTSLDSLGVETAQFFV
                     LSPWNYWFAYYGNEQFDYMKVALLASCRIDQIMLSNDELDLDDLTTALKVISDSTRYQ
                     VLVELTKPHAKSKDIAERMAITGAAVSFHTQKLINGDLLLFNTKNSDVKYSVNRELLQ
                     EVIAKLTEDFDL"
     gene            complement(2497..3462)
                     /locus_tag="U1404_000958"
     CDS             complement(2497..3462)
                     /locus_tag="U1404_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347924.1"
                     /translation="MQNKTKQLNTSLLSLIQFIGAILVVALHCRRLFEADQLHFIQKS
                     IFSRMVVPYFMVTASFFLRRNYPSLSKQYLTWSILYLPFYLIYLTLQEIPFLYYPLAL
                     LVGLTYTGTSYQLWYMPAFFLGLILVHLSLEKWGWRITACLACLLYLLGSVETYSAYL
                     AESIFLTAFDNYKTFFFTSRNGLFYAPIFVLIGFYLANKLNHPIFQHRQKTKLLVCTA
                     LLAFEATVIYLNQGYDKNFLFSLIPFTAYLVAWTLTTDLFRKKKFQFLKEYASYYYFI
                     HVIPVEISFFFLETSSLTKIQQGWLVFLITIITCQLLSWLIINTQ"
     gene            3651..4337
                     /locus_tag="U1404_000959"
     CDS             3651..4337
                     /locus_tag="U1404_000959"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEM5347925.1"
                     /translation="MKDLHAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNE
                     RLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRL
                     GKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTD
                     YKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQA
                     AAKNAVEARG"
     gene            4340..7873
                     /gene="smc"
                     /locus_tag="U1404_000960"
     CDS             4340..7873
                     /gene="smc"
                     /locus_tag="U1404_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEM5347926.1"
                     /translation="MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESL
                     RWALGESSAKSLRGGKMPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVER
                     HIYRSGDSEYLIDGQKVRLRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAI
                     FEEAAGVLKYKTRKKETESKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLEL
                     DGQRKELYLDVLVAQLLLGKEKLSEKEAELESVKTELTSYYKQRSELEQENQNLKEKR
                     HRLSEQLEREQAVLLDLTKLISDLERKIEVHKLESSQNESSRQEAQARLENLLTRREQ
                     LAEQIEQKQETLAQLDSSLSSLKDDIAAVDKEISYFSEDPDQVLDHLREQYVALMQEE
                     AEASNSLTKIQQDIANQISLSESKSEDLARLQTEKQTAQEVLDKSRKSLEEADHVLRQ
                     LLESYQIKKSELDQTQTAYQAEQGRLFDLLDQLKGKQARQSSLEAILKNHSNFYAGVK
                     AVLQAAPSLGGIIGAVSEQLTFDTRYQTALEIALGGASQNVIVEDEATAKRAIAFLKE
                     KRQGRATFLPLTTIKPRQLSGQQVSLLESSEGFLGLASDLVTYQPNLDAIFQNLLGTI
                     AIFDSIDHANQAARATKFQVRMVTMDGAEIRPGGAFAGGSNRNNSTTFIKPELDALLG
                     EIAELSSQLQEQESLVAAKKTSLDQTREALETIKAEGEEARLNQQSARIHQEQAENRL
                     AQLSAQYDLQMSQVSPTILTELEEAAAKEEVNVQALNEKKLALDQQINQVRDNRDSIQ
                     ESLQKLQTQKGQLTLEQAELTSQLRFEQTDLRRLQEEKVVADKEISLLEDMIDQKLEA
                     LEDTSIEILEEQLQAASDKQNQTNQILIRLKFELEDIDGQFEDLEERLQQARTKNDDL
                     IRKQAKLEADCEQAGDKLRTLLGNLTEHFKLSFEAAQSQAKEVENLAVAEQSLKDLER
                     AIRALGPVNLDAIEQYDEVNNRLTFLNEQRTDILSARDLLLDTIHEMDDEVKERFKVT
                     FEAIRESFKQTFKQMFGGGSADLILTEGNLLTAGVEISVQPPGKKIQSLNLMSGGEKA
                     LSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKESQFIVVTHRKGT
                     MAAADAMYGVTMQESGVSKIVSVKLKDVEKL"
     gene            7870..8679
                     /locus_tag="U1404_000961"
     CDS             7870..8679
                     /locus_tag="U1404_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5347927.1"
                     /translation="MINKIYASDMDGTFLREDHSFDKERFRRILNQFKEKGYLFVATS
                     GRSMQSLKLVFEDFVDEIGFVAENGSIVEYQGQTIFMDDPISPEIYLPIIAGIDAGPF
                     GSSRSMVLSGLENFYLLKNAEPQFLEAMTNYYAHFRLVDTFEEVREEIIKINAKFSPE
                     EMDDARRWLNDTFEGVTAMTTGFDNIDIIPNGSNKSVGLSHLCAHFGITRQDVVAFGD
                     NQNDLDMFDFAGLALATENAREEVKAQADWMIGHCNDGAVLAYLEEEVNGN"
     gene            8669..9481
                     /locus_tag="U1404_000962"
     CDS             8669..9481
                     /locus_tag="U1404_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5347928.1"
                     /translation="MAIKLIALDLDGTLLTSDKRISEANKKALQAARERGVYVVLTTG
                     RPLQAIGTFLEELDLLGENQYSITFNGGLVQENTGRVLDKVGFTIEDVRTIRRVTNDL
                     DLPLDVLYGGDVYSLPSAHESLYLTCNPLLNKIVASDEEMPEDFVYNKAVSAVAADFL
                     DGQIPKIPAELHERFEIFKSRDILLEWSPKGVHKANGLAKLIGHLGIDQSEVMACGDE
                     GNDLSMIEWAGLGVAMANATDEIKSAANLVLPKNNDEDGIAWVIEHYVLNED"
     gene            9483..10757
                     /gene="ftsY"
                     /locus_tag="U1404_000963"
     CDS             9483..10757
                     /gene="ftsY"
                     /locus_tag="U1404_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEM5347929.1"
                     /translation="MGLFDRLFGQKKQEEQVALVEEVEREQSASSEDTVTTEVESATQ
                     EMEKFQSEVAETELTAEQEAQKQRTLDMMAQYYAAKEAAAARVKEAQEQGFDPAIQTK
                     VKEEPVEEVAPVGQESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEML
                     ILSDVGVQVASTLTEELRYEAKLQNAKKTDELRRVIIEKLVDIYEKDGQFSERINFQD
                     DLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDV
                     PVVTGPEKSDPASVVFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRT
                     LPDAPHETLLALDASTGQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELD
                     IPVKLIGFGEKIDDIGEFKSEEFMRGLLEGLV"
     gene            complement(10781..11338)
                     /locus_tag="U1404_000964"
     CDS             complement(10781..11338)
                     /locus_tag="U1404_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347930.1"
                     /translation="MQHKGTQILETERLILRPFQASDVESVFQNWTSDEKVTTYLTWP
                     THQTLQDSEDYVQFCLQSYSQEKTYRWVIELKENQQPIGDISVVSLDERVQAAELGWV
                     LGSKWWGQSYMAEALEAVNHYLLEEVGCLRITAVHDSENRPSGRVMEKVGMTYEGTLR
                     QAARNNRGIVDIAIYSLLHTDRKSR"
     gene            complement(11340..12014)
                     /locus_tag="U1404_000965"
     CDS             complement(11340..12014)
                     /locus_tag="U1404_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM5347931.1"
                     /translation="MTELNTILTQLQAASHAGTLKRYEKIGETKPYYGVPMGAISGIA
                     KAYKNRLDLFAPLWQTGVLEAQYLAIQIAKNKPDQLPQADLENCLNEQISVNVLDKLA
                     SIILSKRKDSRVWEEDLLAKDQAIFQRLGWFLRAKYFAGKTATNQEIEETLDHIRQHL
                     QTADPLIQWTMNQCLVEIAVAYPDYLEQGLVIGQELAVYSDMKVPKGCTSAYAPDWIE
                     ALLRRK"
     gene            complement(12156..13643)
                     /locus_tag="U1404_000966"
     CDS             complement(12156..13643)
                     /locus_tag="U1404_000966"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000096131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEM5347932.1"
                     /translation="MSSHVLFTIFGASGDLAKRKLYPSLFRLYKAGHIKENFAVIGTA
                     RRPWTKEFFEQTVIESLGDLPDTPRQAHEFASHFYYQSHDVNDTEHYVALRKLQDDLC
                     EKYNTQHNKVFFLSMAPEFFGTIAKHLKSEQIVDGQGFERLIIEKPFGTSLETASKLN
                     DELAAAFNEDQIYRIDHYLGKEMVQNIFAVRFANIIFEHIWNRDYIDNVQITFAEAIG
                     VEDRGGYYDHSGALKDMVQNHALQVLSLLAMDKPASFKEEDVRAEKIKVFQHLRQPSD
                     EDLKRNFIRGQYAAGSIDGKDYVSYLDEPNIAEGSQTETFAGGVFFVDTDRFRDVPFF
                     FRTGKRLTEKGTRVTITFKHAEDIFGQPSEANVLTIFIQPTEGFMLSINGKEVGSHFA
                     LTPAKLNFRHNATALGNSPEAYEKLFFDVLNGDSTNFSHWEEVKASWSLIDRIVDLWA
                     SNQVPLHTYPAGTMGPEATFDLLESYGCKWVWTPDVWYRERGLLK"
     gene            complement(13722..14537)
                     /locus_tag="U1404_000967"
     CDS             complement(13722..14537)
                     /locus_tag="U1404_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000617844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HEM5347933.1"
                     /translation="MIRFLILAGYFEMTMYLYISGKLDQYINLHYSYLAYLSMVLSFI
                     LAIVQLYVWVKEIRVHSHLKSKIAKLSSVGLLLIPLAIAWLFPTVSLDSTTVAAKGYH
                     FPLAAENDTNTQNQEGTTVQYLKPDTSIYFTKSAYQNQMREIADRYLAEETIIVTNEN
                     YMEVMEAIYDYPTEFSGKTIEMIGFVYNDPDNSQQFFLFRFGIIHCIADSGVYGLLST
                     GATTEFPNNTWVKARGTIKVSYHTSLKQNLPTLELQSMVQIEQPDSPYVYRVF"
     gene            complement(14534..15439)
                     /locus_tag="U1404_000968"
     CDS             complement(14534..15439)
                     /locus_tag="U1404_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM5347934.1"
                     /translation="MFGLDQLPTSVLQAGAIFLSIMIEALPFVLIGAIISGFIDVFIT
                     PDKVRKLLPKNKFLAILFGTFIGFIFPSCECGIVPIVNRLLEKKVPSYTAVPFLVTAP
                     VINPIVLFATFTAFGNSLLFAFYRALGAIIVSLVLGIILGFFVKGPILKGSKFDHHQH
                     GYSDKTSWQKVGFALIHAIDEFFDTGRYLVFGCLFASLVQVYIPTAVLTTIGHSPLTA
                     ILLMMLLAFLLSLCSEADAFIGASLLSSFGFAPVMAFLVIGPMVDVKNLLMMKHYFKG
                     KFIVGFIITITLVILGYSLILGGVV"
     gene            complement(15441..15587)
                     /locus_tag="U1404_000969"
     CDS             complement(15441..15587)
                     /locus_tag="U1404_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347935.1"
                     /translation="MAVTYKRQDDLEKMLEEFASFEKLEEIEYPDPKSKENSEKNNLN
                     QDKK"
BASE COUNT         4544 a         2906 c         3778 g         4378 t
ORIGIN      
        1 tattaaacaa atatttaatc gatgtttaag gagatgttta tgaaaaagtt gattcacaat
       61 aaattatttc tatctagctt tgtagcagac ttgatttcta actttggaga tactctttac
      121 tatctggctt tgatgaacca tgttttactc ttagcagata ccaagtttgc cctggctatg
      181 attaccgcat ctgaaacctt gccgattttg gctggtctct ttatcgggat ttgggcagac
      241 aagaccaaaa acaaattgga taccattctt gcaactctgg tggttcgtgt cggtctctat
      301 gcctttgttg gcttcttgat gggatttgca ccagccctct gggttgtggc ggtggtctgc
      361 gtcatcaact tcctgtctga ccttgctggt caatacgaaa acggtctcta tatgccagtc
      421 agcttgcggg ttgtggctgc tgaagaccgt gaaacagcta tggcttttaa gatgacggtg
      481 aaaagtcttt tgcaaattgc cttccaagct agcggtgcta tcctcatcgg attcatgtct
      541 taccagaatc tcgccttctt caatgcagag accttcttgg tcagtcttgc catcatggca
      601 accctccgtc cagctcttgc caagctactg aaggaaaatc ctatccaaga agctgagcaa
      661 acagaaacag aagcaggact tatcaagggt atgcgtaaca gtctcaaaga atcctaccaa
      721 gctgttcaga atattcttgt tctcaaagcg tcaattgtga ccattgccag cctgaatgcc
      781 atttttacag cactttcacc attagttatt ctcaatatga aggagttctc agactttgtg
      841 attgtcaatg caggaacaac cgttgctttg atttccattt tcttctcagt tggtagtatc
      901 ttggggtcaa gtatcggtat ggctttgttc aaaaatgtta gcttgatcaa tctcctcaaa
      961 ttctctacat tgatgccagt cttgattttc tcgggtttct ttctccacaa tatttatgtg
     1021 gtattgacgg ttatttttgt gacagctatg actttgggtg tcttcaatcc gaaaatgaat
     1081 gccttggtct taaatgaact gcctgaagat aaattggcga cagtcggtgg agggattgat
     1141 gctttctgcc agattggtat ggtagcaggt caagccttgg tagcccttat ggtaacaatc
     1201 ttatctgtca caagtatttc cctcatcttc ctcttgcttt ctgtgggact agtaagctat
     1261 actattcttg tgggttgtaa acctaaaaat gaagtagctc aagtttagaa agtatgcgta
     1321 tgaaattaga ttatcgagat taccgcagtg aaattgtgga aaaactgttc attcccttga
     1381 ttgtcaagga gcgtgaggag ccgtttgaag cggatttgtc acagaaggag aaagacattc
     1441 tcaaagatgc cttggacatt cgcaatgaag tagaaaacaa gctggcggat tttcgtcagg
     1501 aagtcaatga ggtctttgtt tggggccata tctttacaat cctgcacacc ttgtatttct
     1561 acctcttgga tcaaggacag gatccaaaga cagtcgagga ggcttgtcag ctgattttga
     1621 ccttatcgca agaagaggta gaagatgcta tgcggaccat gctagcgtct gaaaatgacg
     1681 gtcatcgtga aaaggacctc agcctcatgg aactcttgga aaagacagat aaaaagccag
     1741 cagaaaagtg gtattggtca ctagcccttc gcaatccctt ggaaactgtt gagcggtctg
     1801 tcgatctcct gaacaagcta ctcccaatct atcagccgta ttttgaaggg gcaagagcag
     1861 agcgggaagc ctttgctaga gactttgaca ttgaacaact ctacagagaa tccaagcagt
     1921 tagccatgac cagcttggat agcttgggtg tagaaactgc ccaattcttc gttctcagtc
     1981 catggaatta ttggtttgct tattatggca atgaacaatt tgactatatg aaagttgctc
     2041 ttttagcttc ctgccgaatt gatcagatta tgctgtcaaa tgacgagttg gatctggatg
     2101 atttgacaac ggctcttaaa gtcatcagcg atagtacgcg ttatcaggtc ttggtggagc
     2161 tgaccaagcc tcatgccaag agcaaggaca ttgcagaacg catggctatt acaggggcgg
     2221 ccgtatcctt ccacacccaa aagctaatta acggtgactt acttctcttc aatacaaaaa
     2281 atagcgatgt caaatacagt gtcaatcgtg aacttctcca agaggtcatt gccaaattga
     2341 cagaggattt tgatttgtaa aaaaagcctt gtaagttaga tcttacaagg ttcttttgtg
     2401 cttatactct tcgaaaatcg aaatcagacg ttgttgactt gatttgatga acttcagttc
     2461 tatccgcatc tgcgtcgcct agtctgtttt tgattttcat tgagtattaa tgattaacca
     2521 gctgagtagt tggcaagtga tgatggtgat aaggaagact aaccaccctt gctgtatttt
     2581 ggtcagggaa ctagtttcta ggaagaaaaa gctgatttcg actgggataa catggataaa
     2641 ataataatag ctggcgtatt cttttagaaa ttggaatttt ttcttgcgga agaggtctgt
     2701 ggttaaggtc caagcgacta gataggctgt gaacggaatc aggctaaata gaaagttctt
     2761 gtcgtagccc tgattgagat agatgacagt ggcttcaaaa gctaaaaggg ctgtgcagac
     2821 aagtagtttg gttttttgtc ggtgttggaa aatggggtga ttgagtttgt tggctagata
     2881 aaagcctatc aggacaaaaa tcggtgcgta gaagaggccg ttgcgactgg tgaaaaagaa
     2941 ggttttgtag ttgtcaaatg cggtcaggaa aatcgattct gctaggtagg cggagtaggt
     3001 ttcgactgag cctagaagat agagaaggca ggctagacaa gctgtgatgc gccagcccca
     3061 tttctccaag gaaagatgga cgaggataag acctagaaag aaagcgggca tgtaccagag
     3121 ttggtagctg gtgccggtat aggtcagtcc gactaggagt gcgaggggat agtagaggaa
     3181 ggggatttct tggagtgtta ggtagatgag gtagaagggc aggtagagga tggaccaggt
     3241 caggtattgt ttggagaggc tggggtagtt gcgtcggagg aagaagctgg cggtgaccat
     3301 gaagtaggga acgaccatgc ggctaaagat tgatttttgg atgaagtgga gctggtctgc
     3361 ttcaaatagt cttcgacagt gaagggcaac gacgaggatg gctccgatga actggatgag
     3421 ggagagcagt gatgtattga gttgttttgt cttattttgc atgctaacgt tcttcttttt
     3481 tcttctattt tatcgaaatc tgatgaatat gtaaatgttt gcaaaaagat gtggagaggt
     3541 gctggctgaa acttagttga caagagaagt ccagtggaaa atgtggtata atgttaggac
     3601 ggagtaaatg taaaccatct atttcgttta agttagaaag gagcatatag atgaaagatt
     3661 tacatgcaaa attattggct gattttggga ttgatttttc ggatttgaat ttattagaaa
     3721 cggcttttac ccatacttct tatgccaatg agcatcgcct tctaaaaatt tcacataatg
     3781 agcgcttgga atttttagga gacgctgttc tccaattaat gatttccaaa tatctctatc
     3841 aaaaatatcc tgatagaccc gaaggtgaga tgtccaagtt gcgttcgacc tttgtacgtg
     3901 aggagtcttt ggctggtttt tcacgtgctt gtggttttga tcggtttctt cgtcttggta
     3961 agggggaaga gaagtctgga gggcgaaatc gcgatactat tttaggagat gctttcgagg
     4021 cgttcttagg agctctgcta ttggacaaag gggaaaagac cgtggaggaa tttatccata
     4081 aggtcatgat tcctcgttta gaaaaaggga attttgagcg cgtgaccgac tataagactg
     4141 ctttgcagga aattttgcag gtcaatggtg agattgctat ttcgtatcaa gtaatagctg
     4201 agtctggacc tgcccatgat aagacctttg aagtggaggt atctgctgat cggcgtgtga
     4261 ttggtcgtgg tcgtggtcgc tctaagaaat tagctgaaca agccgccgcc aaaaatgctg
     4321 tggaggctag aggataggta tgtatctaaa atcaattgaa atgcagggct ttaagtcctt
     4381 tgcggataag actaaggtag tctttgatcg tggagtgact gctgttgtag ggccgaatgg
     4441 ttctggcaag tccaatatta cagaaagtct acgttgggcc ttgggagagt cgtctgctaa
     4501 aagcctacgt ggaggcaaga tgccagacgt catcttttcg ggaacagaaa gccgcaaggc
     4561 tcttaactat gcctcggttg tcgtgacctt ggataatagc acaggtttta tcgccaataa
     4621 acagaaagaa atcaaggtag aacgccacat ttatcgatct ggtgatagtg agtacttgat
     4681 tgatgggcaa aaggttcgtc tacgggatat tcatgatctt ttcatggata cgggcttggg
     4741 acgtgattct ttctctatca tttcacaagg gcgggttgaa gcaattttca attccaagcc
     4801 tgaggaacgc cgtgctattt ttgaagaggc ggcaggggtc ttaaaataca agacgcgtaa
     4861 aaaagaaaca gaaagtaagt tggcacaggc ccagggcaac ttggaccgct tggatgatat
     4921 tatctatgaa ttggataatc aggtcaaacc attagagaaa caggcacaaa ctgctaagaa
     4981 atttctagaa ttagatggtc aacgtaagga attatactta gatgttttgg tggctcagtt
     5041 gttgcttggt aaggaaaagt tatcggaaaa agaagccgaa ctagagtctg tcaaaactga
     5101 attgactagc tactacaaac agcgttctga gctggagcaa gaaaatcaga acttgaaaga
     5161 gaagcgccac cgcctttcag aacaattgga gcgtgaacag gcagttctgt tggatttgac
     5221 caagttaatc agtgatttgg agcgaaaaat tgaggtccat aaactggaat ctagtcaaaa
     5281 cgaatcaagt cgtcaagaag cgcaggcgcg cttggaaaac ttgttgacta gacgagagca
     5341 gttggcagaa cagattgagc aaaagcaaga aacgcttgcg caattagata gttccttgtc
     5401 tagcttgaaa gacgatattg ctgcggtaga caaagaaatt tcctactttt cagaagatcc
     5461 tgatcaggtt ttagatcatc tgcgtgaaca gtatgttgct ctgatgcagg aagaggcaga
     5521 agcttcaaac agtctgacca agattcagca ggatattgcc aatcaaatca gtctttctga
     5581 gagtaaatct gaagacttgg cacgcttgca gacggaaaaa caaacagctc aagaagtact
     5641 tgataagagt cggaaaagtt tagaagaagc agatcacgtt ttacgccagt tgcttgagag
     5701 ctatcagatt aaaaaatcgg aattagatca aacccagact gcttatcagg ctgagcaagg
     5761 tcgcttgttt gatttgctgg atcagttgaa aggcaagcag gctcgccagt ctagtttaga
     5821 agctatttta aaaaatcact ccaatttcta cgcgggggtt aaggctgtct tacaggcggc
     5881 accaagctta ggaggaatta ttggagcagt cagtgaacaa ttgacctttg atactcgtta
     5941 ccaaacggct ttggaaattg ctcttggcgg tgctagtcaa aacgtcatcg ttgaagatga
     6001 agcgactgct aaacgagcta tcgcattttt gaaagaaaaa cggcaaggac gggcaacctt
     6061 cttacctcta acaactatca agccacgtca gctttctgga cagcaagtct ctttactaga
     6121 atcttcagaa ggattcttgg ggcttgcaag tgatttggtg acttatcagc caaatttaga
     6181 tgcgattttc caaaatttgc taggcactat tgcgattttt gatagcattg accatgccaa
     6241 ccaggcggcg cgtgcgacca agtttcaagt gcgtatggtg accatggatg gagcggaaat
     6301 ccgtcctggt ggagcctttg ctggtggtag caatcgaaat aacagcacga cctttatcaa
     6361 accagaactg gatgctcttt taggagaaat agcagagctg tctagccagt tgcaggagca
     6421 agaaagcttg gttgcagcta agaaaactag cttagaccaa accagagaag ccttggaaac
     6481 gattaaggcg gagggggaag aagctagatt gaaccagcag agcgcaagga ttcatcagga
     6541 acaggcagaa aatagactgg ctcagctatc agcccagtat gacctgcaaa tgagtcaggt
     6601 tagtccgacc attttgactg agctagaaga ggctgctgct aaggaagaag taaatgtcca
     6661 agccttgaat gagaaaaaac tagccttgga tcaacaaatc aatcaagtcc gtgataatcg
     6721 cgacagtatt caagaaagct tgcagaaact acagactcag aagggtcaac taactttgga
     6781 acaggctgaa ctgactagcc aacttcgttt tgaacagaca gatctgagac gtttgcaaga
     6841 agaaaaagtg gttgcagata aggaaatttc tcttttagag gatatgattg accagaagct
     6901 agaagctctt gaagatacta gcattgagat tcttgaagaa caattgcagg ccgcatctga
     6961 taagcaaaac cagaccaatc agattctaat tcgcttaaag tttgagttgg aagatattga
     7021 tgggcagttt gaagacttgg aagaaagatt gcaacaagct cggactaaga atgatgattt
     7081 gatccgtaag caggctaagt tagaggcgga ttgtgagcaa gcgggcgata aattacggac
     7141 tttacttggt aatttgaccg agcatttcaa attgagtttt gaagctgctc agtctcaggc
     7201 caaggaagtt gagaatcttg cagttgctga acaaagcctc aaagacctag aaagagctat
     7261 tcgtgctttg ggtccagtca atttggatgc tattgagcag tatgacgagg tcaataaccg
     7321 tctgaccttc ctcaatgagc aacggacaga tattttgtcg gcgcgtgatt tactactaga
     7381 tactatccac gagatggatg atgaagtcaa agagcgcttc aaggttactt ttgaagctat
     7441 tcgtgaaagc tttaagcaga cattcaaaca aatgtttggc ggtggttcag cggatttgat
     7501 tttgacagaa ggtaacctat tgactgcggg tgtggagatt tctgttcaac ctccgggtaa
     7561 gaaaattcaa tctctcaatc ttatgtcagg tggcgaaaaa gccctttcgg ccctcgctct
     7621 gctattttcc attatccgtg ttaagaccat tccttttgta attctcgatg aggtggaggc
     7681 agccttggat gaggcgaatg tcaaacgttt tggcgactac ctcaaccgtt ttgataagga
     7741 gagtcagttt atcgtcgtga cccaccgtaa agggaccatg gcggcagcgg atgccatgta
     7801 tggggtgacc atgcaggaat ctggcgtgtc caagattgtt tccgttaagc tgaaagatgt
     7861 ggagaaatta tgattaacaa aatttacgcc agtgatatgg atggtacctt tttacgagaa
     7921 gaccatagtt ttgataagga acggtttcgt cgtatactga atcagtttaa agaaaaaggt
     7981 tatttatttg tggcaacaag tgggcgatct atgcaaagcc tgaaacttgt ttttgaagat
     8041 tttgtagatg aaatcggttt tgtggcagaa aatggttcaa tcgttgaata tcaggggcag
     8101 actatcttta tggatgatcc aattagtcct gaaatttatc tgccaattat cgcgggtatt
     8161 gatgcaggtc cctttggtag cagtcgttcc atggtgctgt ctggacttga aaacttttat
     8221 ttattaaaaa atgctgagcc tcagttttta gaagcgatga cgaattatta cgcacatttt
     8281 cgattggtag acacatttga agaagttcga gaagagatta taaaaatcaa tgccaaattt
     8341 tctcctgagg aaatggacga tgctagacga tggttaaatg atacatttga aggtgtaacg
     8401 gccatgacaa ctggttttga caatattgat ataattccaa atggttcaaa taaatcagtt
     8461 ggattgagtc atctctgtgc tcattttgga attacccgtc aggatgtagt ggcatttggt
     8521 gataatcaaa atgatttgga tatgtttgac tttgcaggtc tggctcttgc gacagaaaat
     8581 gcaagagagg aagtgaaggc ccaggcagat tggatgattg gtcattgcaa tgatggagca
     8641 gtattagcct atttagagga ggaagtaaat ggcaattaag ttgattgcat tggatttaga
     8701 tggaacactt ctgacatcgg acaaacggat ttcagaagct aataaaaagg ccttgcaggc
     8761 agcgcgtgag cgtggagttt atgtagttct gacaacaggg cgtcctttac aagctatcgg
     8821 tacttttcta gaagaactag atctgctagg ggagaatcaa tattcgatta catttaacgg
     8881 tggtctagtc caggaaaata caggtcgggt tttggataag gttggcttca ccattgaaga
     8941 tgtgcgcacc atccgtcgtg tgacaaatga tttggacctg cctttggatg tcctgtatgg
     9001 tggcgatgtc tattctctac catcagccca tgaatcactt tatctaactt gtaatccatt
     9061 gcttaataaa attgtggcaa gcgatgagga aatgccagaa gattttgtct acaataaggc
     9121 agtttcagct gtggcagcag actttttgga tggacaaatt ccaaaaattc ctgcggaact
     9181 tcacgagcgt ttcgagattt tcaaatcgcg tgatattctg ctcgaatgga gtccaaaagg
     9241 tgttcataaa gcaaatggtt tggctaagtt gattggacat ctggggattg atcagtcaga
     9301 agttatggcc tgtggcgatg aaggaaatga tctttcgatg attgaatggg ctggtctggg
     9361 tgttgccatg gctaatgcga ctgatgaaat caagtctgcg gccaaccttg tcctgccaaa
     9421 aaacaatgat gaagatggca ttgcttgggt catcgagcac tatgtattga atgaggacta
     9481 gtatgggatt atttgatcga ttatttggac aaaaaaaaca agaggagcaa gtcgctcttg
     9541 ttgaagaagt ggaaagggag cagtcggctt ctagcgaaga tacagtaact actgaagttg
     9601 agtcagctac tcaagaaatg gaaaagttcc agtctgaagt agcagagact gaattgacag
     9661 ccgaacaaga agctcagaaa caacggacct tagacatgat ggctcaatat tatgcagcca
     9721 aagaagccgc tgcggctcga gtgaaggaag cgcaggaaca aggctttgac cctgctattc
     9781 aaaccaaggt caaggaagag cctgttgagg aagttgctcc agtagggcaa gaaagtgaac
     9841 aggacaagta ccagcgaacc ttgaaaaaaa ctcgtacagg atttggggca aggctcaatg
     9901 aattctttgc caatttccgt tcggttgatg aagaattttt cgaagagttg gaagaaatgc
     9961 tgattttatc agacgtaggt gtgcaagttg cttctacgct gacagaggag ctccgctatg
    10021 aagccaagct acaaaatgcc aagaagacag atgaactccg tcgggttatc atcgaaaaat
    10081 tggtggatat ttacgaaaaa gatggtcaat tcagcgagcg aatcaatttc caagatgatt
    10141 tgacagtcat gctctttgtc ggtgtcaacg gtgttgggaa gacgacgtct atcggtaagt
    10201 tagcctacaa gtacaagcaa gctggcaaga aggtcatgtt ggtcgcagcg gacaccttcc
    10261 gtgcgggtgc ggtagcccag ctggtcgagt ggggtcgccg tgtcgatgtg ccagtagtca
    10321 caggacctga aaagtcagac ccagctagtg tggtttttga tggggtaaaa cgtgccgtgg
    10381 cagaaggcgt ggacattctc atgattgaca cagcaggtcg cttgcaaaat aaagaaaacc
    10441 tcatggcaga gctggaaaaa atcggtcgca tcatcaaacg aaccctacct gatgcaccgc
    10501 atgaaaccct cttagcacta gatgcctcca caggtcaaaa cgccctcagt caagccaagg
    10561 aatttgcaaa aattactcca ttgactgggc tagtcttgac taagctagac ggtacagcaa
    10621 aaggtggtgt tgtccttgcc atccgtcagg aactggatat tccagtcaag ctgattggtt
    10681 tcggtgaaaa aattgatgac ataggtgaat tcaaatccga agaattcatg cgtgggcttt
    10741 tggaaggatt ggtatagaaa aaagtcgtta gttcaatgaa ctagcgactt tttctatctg
    10801 tatgcaacag tgagtaaatg gcaatatcca caataccccg attatttcga gcggcttggc
    10861 ggagagttcc ttcataggtc ataccgactt tttccatgac acgaccagaa ggacgatttt
    10921 cactatcgtg aacagctgta atccgtaaac agcccacttc ctccaataaa tagtgattaa
    10981 cagcttcaag agcttcggcc atataacttt gcccccacca tttactgccc aacacccaac
    11041 ctaattcggc agcttgaact ctttcatcaa ggctgacaac ggaaatatct ccaatgggtt
    11101 gctgattttc tttgagctca attacccacc tgtatgtttt ttcctgtgaa taggattgaa
    11161 gacagaactg gacatagtct tcactatctt ggagtgtctg atgagttggc caggtcagat
    11221 aggtggtaac cttttcatct gaagtccagt tttggaaaac tgattcaaca tcgcttgctt
    11281 gaaaagggcg taaaattaga cgttctgttt ctaaaatctg agttccttta tgttgcatct
    11341 tatttcctcc tcaacaatgc ctcaatccag tctggtgcat aggcagaagt acagcctttt
    11401 ggcaccttca tatcggaata gacagcgagt tcctgaccga ttacaagtcc ctgttccagg
    11461 tagtcgggat aggcaacggc aatctccacc aagcattggt tcatggtcca ttggataagc
    11521 gggtctgcgg tttgtaaatg ctggcgaata tggtctagag tttcttcaat ttcttggttt
    11581 gttgctgttt ttccagcaaa gtatttggca cgaaggaacc aacctaggcg ttgaaaaata
    11641 gcttggtctt tggcaagcaa atcttcttcc caaaccctgc tgtcttttcg tttgctgaga
    11701 atgatggaag ccagcttatc gagcacattg accgaaattt gttcattgag gcaattctct
    11761 aggtcagctt ggggaagctg gtcaggctta ttttttgcaa tttgaatagc taaatattgt
    11821 gcttcaagga cacctgtttg ccagagtggg gcaaataagt ccagtcgatt tttataggcc
    11881 ttggcgatac cagaaatagc tcccattgga acgccgtagt agggcttagt ttcgccaatt
    11941 ttttcataac gcttgagggt gccagcatgg ctggctgctt ggagttgtgt gagaatggtg
    12001 tttaattcag tcataaatat ctcccaaaaa aactggattg ctccagtttt tatatgtagt
    12061 cgtttagttt gcttttagta caaggcaacg agctgtaggc tgtactaaag tacggcaaag
    12121 cgagttaacg aagtaatcaa agataaacta aatgactatt tcaataagcc acgttcacga
    12181 taccatacat ctggtgtcca aacccacttg caaccgtagc tttctagcaa atcaaaggtt
    12241 gcctcaggtc ccatagttcc agctgggtag gtgtggagtg ggacttggtt gcttgcccac
    12301 aaatcaacaa tgcggtcaat caagctccag cttgctttca cttcttccca atggctaaag
    12361 ttggtagagt cgccgttcaa gacatcgaaa aatagttttt cgtaggcttc gggtgaattt
    12421 ccaagagcag ttgcattgtg gcggaagttg agtttggcag gagtaagagc aaagtgggaa
    12481 ccaacttcct tgccgttgat agagagcatg aagccttctg ttggctggat gaagatggtc
    12541 aatacattgg cctcagaagg ctgaccaaaa atatcttccg catgcttgaa ggtgatggtc
    12601 acgcgcgtgc ccttttctgt cagacgttta cctgtacgga agaagaaagg tacatcacgg
    12661 aaacggtcag tatcaacgaa gaagacacct cctgcaaagg tttctgtctg agaaccttcg
    12721 gcaatatttg gttcatccaa gtagctaacg tagtcttttc cgtcgatgga acctgctgca
    12781 tattgaccac ggatgaagtt gcgtttgagg tcctcatcag aaggctgacg aaggtgttgg
    12841 aagaccttaa tcttttcagc gcggacatct tcctctttga agctggctgg cttatccatt
    12901 gctagaaggg ataggacttg aagggcatgg ttttgcacca tgtcttttaa ggcgccagaa
    12961 tgatcgtagt agcccccacg atcctcaaca ccaatcgctt cagcaaatgt aatttggacg
    13021 ttatcgatgt aatcgcggtt ccaaatatgc tcaaaaataa tattggcaaa gcgaaccgca
    13081 aagatatttt gtaccatttc cttgcctagg taatggtcga tacggtagat ttggtcttca
    13141 ttgaaggcag cggctaattc atcattgagt ttgcttgcag tttcaaggct tgttccgaaa
    13201 ggtttttcga taatcaaacg ctcaaaacct tgtccatcaa cgatttgctc agatttgagg
    13261 tgtttggcaa tggttccgaa aaattcaggc gccatagaga ggaagaagac cttgttgtgc
    13321 tgggtattgt atttttcaca caagtcgtcc tgcaatttac gaagagctac ataatgttcc
    13381 gtgtcattga catcgtggct ttggtagtag aaatgacttg caaattcatg agcttgacgt
    13441 ggtgtgtcag gcagatcacc tagtgattca atgacggttt gctcaaaaaa ttccttggtc
    13501 cagggtctgc gagctgtacc aattactgca aagttttcct tgatgtgtcc agccttatag
    13561 aggcgaaata aagatgggta aagtttgcgt ttggcaaggt cgccactagc accaaaaatt
    13621 gtaaacaata catgtgatga cataatttca ttcctatctg ttgaatatca ttaatagtat
    13681 accacaaatt gtcagaaaat tcactttttg agttggaatt attagaaaac acggtagaca
    13741 tacggggaat ctggctgttc aatctgaacc atcgattgta attcaagtgt tgggagattt
    13801 tgtttcaacg atgtgtggta ggaaaccttg attgttcctc tggcttttac ccaagtattg
    13861 ttaggaaatt ctgtggtagc ccccgtagag agtaagccat ataccccaga atcagcaatg
    13921 cagtgaataa taccaaagcg gaaaaggaaa aattgctggc tattgtcagg gtcattgtag
    13981 acaaatccaa tcatttcaat cgtttttcct gaaaattccg taggatagtc gtagattgct
    14041 tccatcactt ccatatagtt ttcattagta acgataatgg tttcttcagc caagtatcta
    14101 tcagcaattt cacgcatctg gttttgatag gcagattttg taaaataaat agaagtatca
    14161 ggcttgagat actgaacagt cgtcccttct tggttttgtg tattagtatc gttttctgct
    14221 gctagtggga aatgatagcc cttggcagca acagttgttg aatccaggct taccgtagga
    14281 aagagccagg ctatagcaag aggaatgagc agtagtccaa cgcttgatag tttggcaatt
    14341 ttgcttttta aatggctatg tactcgaatt tcttttaccc agacatacaa ttgtacgatg
    14401 gcaagtatga aagataaaac catggataga taggctagat agctatagtg cagattaatg
    14461 tattggtcta attttccaga gatataaaga tacatggtca tttcaaagta acctgcaaga
    14521 attaaaaaac gaatcatact acacctccaa gtatcagact atatcccaaa ataacgagag
    14581 tgatagtaat gataaaaccg actataaatt tccctttgaa ataatgtttc atcatgagca
    14641 agtttttaac atccaccatg ggtccgataa ctaagaaagc cattactggg gcgaatccga
    14701 agctggatag tagtgatgca ccaataaagg catcggcttc ggaacatagg gaaagaagaa
    14761 aggccagcaa catcatcagt aaaatagctg ttaatggact gtgaccgatg gtagtcagga
    14821 cagcggttgg aatatagact tgtacgagac tggcaaatag acaaccaaag actaggtaac
    14881 gtcccgtatc aaaaaattca tcaatggcat gaataagtgc gaagccaact ttttgccaac
    14941 tggttttatc tgaataacca tgctggtgat ggtcaaactt gcttccttta agaattggtc
    15001 cttttacgaa aaaaccaaga atgattccca atactaggga tacaatgatg gctcctaggg
    15061 ctctatagaa ggcgaaaagt agggaatttc caaaagcggt aaaggttgca aaaaggacga
    15121 taggattaat cacaggcgcc gttactaaaa agggaacagc agtataactc ggcacttttt
    15181 tctctaatag ccgattgaca atagggacaa taccacattc gcaagacgga aaaatgaagc
    15241 cgataaaggt tccaaataga atggcaagaa acttgttttt aggtaagagt ttacgaacct
    15301 tatctggtgt tataaacaca tcgataaaac ctgaaataat agctccaatc aagacaaagg
    15361 gcaaggcttc aatcatgata gacaggaaaa tagcccccgc ctgtaggacg gaggtaggta
    15421 attgatcaag accaaacata ttatttttta tcctgattca agttgttttt ctcggaattt
    15481 tcttttgatt ttggatctgg atactcaatt tcttccaatt tttcaaatga agcaaattct
    15541 tccagcatct tttctaaatc atcttgtcgt ttataagtta cagccatagg gcacctccaa
    15601 aaattt
//
LOCUS       DASGCC010000046        15356 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.046, whole genome shotgun sequence.
ACCESSION   DASGCC010000046 DASGCC010000000
VERSION     DASGCC010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15356
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.046"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            18..1259
                     /locus_tag="U1404_000970"
     CDS             18..1259
                     /locus_tag="U1404_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM5347936.1"
                     /translation="MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKIL
                     YEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNL
                     DARSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNV
                     SGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYT
                     YYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSP
                     ENRFVATNDLMNYVYSNFSLVTLVKKGEAFEDSKIKVFNGEKETSPVVAAADLTVVQR
                     KQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLKDQDLIGKGYISEQASVDMIIPSDM
                     KEASWPFSWWNQFVRYVNEKL"
     gene            complement(1533..2948)
                     /gene="sufB"
                     /locus_tag="U1404_000971"
     CDS             complement(1533..2948)
                     /gene="sufB"
                     /locus_tag="U1404_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEM5347937.1"
                     /translation="MSEERIEPTPIDLGEYKFGFHDENVELVASTGKGLNEEVIREMS
                     RIKGEPEWMLEFRLKSYETFKKMPMQTWGADLSELDFDDIVYYQKPSDKPARSWDDVP
                     DKIKETFERIGIPEAERAYLAGASAQYESEVVYHNMKEEYDKHGIIFTDTDTALKEHP
                     ELFKKYFGKLVPPSDNKLAALNSAVWSGGTFIYVPKGVKLDIPLQTYFRINNEGTGQF
                     ERTLIIVDEGASVHYVEGCTAPTYSTASLHAAIVEIIAHEGAYMRYTTIQNWSDNVYN
                     LVTKRARAEKNATVEWIDGNLGAKTTMKYPAVYLEGEGARGTMLSIAFANKGQVQDTG
                     AKMIHNAPRTSSSIVSKSIARGGGEVNYRGQVTFAKNSAKSISHIECDTIIMDDISKS
                     DTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSESEATEMIVMGFVEPFTKEL
                     PMEYAVELNRLIAYEMEGSVG"
     gene            complement(3298..3738)
                     /locus_tag="U1404_000972"
     CDS             complement(3298..3738)
                     /locus_tag="U1404_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEM5347938.1"
                     /translation="MALSRLDSLYMAVVSEHSKLPRHRGSLDGVEKLELHNPTCGDVI
                     ELSVKIEKDVITDIAFDGVGCTISTASASMMTEAVLGKEISQIQELAEIFSQMVQGQE
                     DPRQKGLGDASLLAGVAKFPQRIKCATLPWNALKKALERSDSAE"
     gene            complement(3725..4948)
                     /locus_tag="U1404_000973"
     CDS             complement(3725..4948)
                     /locus_tag="U1404_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5347939.1"
                     /translation="MDFESIRKDFSILDQVVNDEPLVYLDNAATTQKPQQVLDVLEDY
                     YQTDNANVHRGVHTLSERATARYEAARQKVADFIQAKSSKEILFTRGTTTSLNWVAQF
                     AKEILQPDQEVIISVQEHHSNIIPWQQACQQIGAKLRYVPLKDGELDVDSLKSILSEK
                     TKFVSLAHVSNVLGGVVPIGEIAELVHQVGAYLVVDGAQSVPHMAVNVQELDVDFFAF
                     SGHKMLGPTGIGVLYGKEELLNLMSPVEFGGEMIDFVYEQSATWKELPWKFEAGTPNI
                     AGAIGLGAAVDYLTEIGMDAIQAHEAELVDYVFPKLQAIPGLTIYGSQDLSKRTGVIA
                     FNLDDLHPHDVATALDYEGVAVRAGHHCAQPLLRYLQVPATVRASFYIYNTKADCDKL
                     VEAIIKTKEFFNGPI"
     gene            complement(4953..6215)
                     /gene="sufD"
                     /locus_tag="U1404_000974"
     CDS             complement(4953..6215)
                     /gene="sufD"
                     /locus_tag="U1404_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013989976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEM5347940.1"
                     /translation="MTKEKIQEFSALQAEPTWLTDLRLKAFDKIAELDLPVIERVKFH
                     RWNLGDGSLATNDEIGAVPDFTAIGDNPMLVQVGSQTILEQLPVDLVEKGVVFTDFAS
                     AMDLIPDVIEKYLGVAVAYDEHKLAAYNTAYFNATAVLYVPDNVEIDQPVEALFYQDS
                     TSPVAFNKRVLIIAGKNAKLNYLERFESLGDGAATTSANIVVEVIALAGSQIKFAAID
                     RLGKHLDTYLNRRGYLGNDATIDWAIGLLNEGNVVADLDSELKGNGSHANLKVVGLSS
                     GRQVQGVDTRVTNYGHNSVGHILQHGVILESGTLTFNGIGHIVRGAKGADAQQESRVL
                     MLSDKARSDANPILLIDENEVTAGHAASIGQVDPEDMYYLMSRGLDQATAERLVVRGF
                     LGAVITEIPVKEVRDQLIAVIEEKLTKR"
     gene            complement(6232..7005)
                     /gene="sufC"
                     /locus_tag="U1404_000975"
     CDS             complement(6232..7005)
                     /gene="sufC"
                     /locus_tag="U1404_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEM5347941.1"
                     /translation="MSVLEIKDLHVEIEGKEILKGVNLTLKTGEIAAIMGPNGTGKST
                     LSAAIMGNPSYEVTQGEILFDGVNILELEVDERARMGLFLAMQYPSEIPGITNAEFLR
                     AAMNAGKEDEDKISVRDFITKLDEKMELLNMKEEMAERYLNEGFSGGEKKRNEILQLL
                     MLEPTFALLDEIDSGLDIDALKVVSKGINAMRGEGFGAMIITHYQRLLNYITPDVVHV
                     MMEGRVVLSGGPELAQRLEKEGYVQVAAELGIDYKEDDI"
     gene            complement(7485..8657)
                     /locus_tag="U1404_000976"
     CDS             complement(7485..8657)
                     /locus_tag="U1404_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002306490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM5347942.1"
                     /translation="MIPFALKYIMVIITTMVISAIATPLVRFMSLRVGAVDNPNARRI
                     NKVPMPSAGGLAIFVAFTISVLWFLPGIVTRVNYHGTYLHYIWPLVLASSIIVLTGFI
                     DDVKELKPAPKMFGILAAATIIWIFTEFRFDSFKIPFGGPFLQFPVWLSFLLTVLWIV
                     SITNAVNLIDGLDGLVSGVSIISLTTMGIVSYFFLHDSNIFLTLTIFVLVAAIVGFLP
                     YNYNPAIIYLGDTGALFIGFMIGVLSLQGLKNSTAVAVVTPMIILGVPITDTVVAIIR
                     RKLSGQKIYEADKMHLHHRLLSLGLTHRGTVLVIYTISFLFSLTSLLLNVSSRIGGIL
                     LLVTMGLGIEILCELIGIFGINRTPLLNLLRFIGNSSYRQEKIAKYKKCCEEKKRK"
     gene            complement(8654..9376)
                     /gene="mecA"
                     /locus_tag="U1404_000977"
     CDS             complement(8654..9376)
                     /gene="mecA"
                     /locus_tag="U1404_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HEM5347943.1"
                     /translation="MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTV
                     LDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDLDQNLNFDEFTDLSELGDVASMT
                     PDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
                     FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPAL
                     QEHGTLMLPLVAIEELRKVPTV"
     gene            complement(9504..10340)
                     /locus_tag="U1404_000978"
     CDS             complement(9504..10340)
                     /locus_tag="U1404_000978"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEM5347944.1"
                     /translation="MLLELLKAIFLGIIEGVTEWLPVSSTGHLILVQEFVKLNQSKNF
                     LEMFNIVIQLGAILAVMTIYFKKLNPFQPGKTKRDIQLTWQLWAKVVIACIPSILIAV
                     PLDNWFEAHFNFMVPIAIALIVYGIAFIWIENRNSGVEPQVTDLAKMSYKTALLIGCF
                     QVLSIVPGTSRSGATILGAIILGTSRSVAADFTFFLGIPTMFGYSGLKAVKYFLDGNS
                     LNMEQVWILLVASMTAYLVSLVVIRFLTDFVKKHDFTVFGYYRIILGAILLVYAFITF
                     LF"
     gene            10467..12032
                     /locus_tag="U1404_000979"
     CDS             10467..12032
                     /locus_tag="U1404_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM5347945.1"
                     /translation="MKRKLSIFLLTLIAVFSVTTGVRADEYLRVGMEAAYAPFNWTQE
                     DDSNGAVPIEGTNQFANGYDVQVAKKIAASMDKELLVVKTKWEGLVPALTSGKIDMII
                     AGMSPTEERKKEIAFSDSYYTSIPTLVVRSDSQYANATSLADFAGAKITAQQGVYLYD
                     LIDQIEGANKQTAMGDFSQIRQALESGIIDAYVSERPEGRTAEAANKAFKMVELADSF
                     ETNAEDVTIAVGMRKDDERIAQVNKVLATISEEEQIALMDDMIENQPVEEASEGETPS
                     FFAQVWNIVVNNWQQLLRGTGMTLLISILGTIIGTAIGLLIGVFRTAPKAANKALAIG
                     QKVLGWIINIYIEIFRGTPMIVQSMVIYYGTAQAFGLNLDRTLAAIFIVSINTGAYMS
                     EIVRGGIFAVDKGQFEAATALGFTHNQTMRKIVLPQVIRNILPATGNEFVINIKDTSV
                     LNVISVVELYFSGNTVATQTYQYFQTFTVIAIIYFILTFTVTRILRAVEKHFDTDTYT
                     TGANQMQVEVPHD"
     gene            12025..12768
                     /locus_tag="U1404_000980"
     CDS             12025..12768
                     /locus_tag="U1404_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5347946.1"
                     /translation="MTKNVILEIKNLKKSYGQNQVLKDISISVEKGEVISIIGSSGSG
                     KSTFLRSINLLETPTEGQILYHGQDVLDKGYDLTTYREKLGMVFQSFNLFNNLNVLEN
                     AIVAQTTVLKRDRAEAEKIAKENLNKVGMTEQYWQAKPSQLSGGQKQRVAIARALSVD
                     PEVILFDEPTSALDPEMVGEVLKTMQDLAKSGLTMLIVTHEMEFARDVSDRVIFMDKG
                     VIAEEGNPQQIFENPQEERTREFLQRFLG"
     gene            complement(12892..13101)
                     /locus_tag="U1404_000981"
     CDS             complement(12892..13101)
                     /locus_tag="U1404_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347947.1"
                     /translation="MTSYEKVAAVVGWVREKKITGYRISKETNAREMSVIALAQGRAK
                     IDNISFATALGLIDFYDKNHKKFEN"
     gene            complement(13187..14089)
                     /locus_tag="U1404_000982"
     CDS             complement(13187..14089)
                     /locus_tag="U1404_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEM5347948.1"
                     /translation="MVLGPIVFIGSFLFFVLIALILIASGLYVVKQQTVAIIERFGKY
                     QKTSTSGINFKIPFGVDVIAARIQLRMLQSEIVVETKTQDNVFVTMNVATQYRVNENN
                     VTDAYYKLMHPEAQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQKQVAEEMSTYG
                     YVIVKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRL
                     HGVGIAQQRKAIVDGLADSIRELKESNVSLSEEQIMSILLTNQYLDTLNNFAQGGNQT
                     IFLPGNPEGVEDIRTQILSSLRAK"
     gene            complement(14099..15349)
                     /gene="ilvA"
                     /locus_tag="U1404_000983"
     CDS             complement(14099..15349)
                     /gene="ilvA"
                     /locus_tag="U1404_000983"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase IlvA"
                     /protein_id="HEM5347949.1"
                     /translation="MITAKNVEQAYSVLKRVVVRTPLDYSRYLSEKYGATIYLKRENE
                     QRVRSFKIRGAYYAISQLTDDEKSRGVVCASAGNHAQGVAYTCQEMQIPATIFMPITT
                     PQQKIGQVKFFGGDYVEIRLVGDTFDESAKAAQDYTQESGKTFIDPFDDENVQAGQGT
                     VAYEILEEAEEQTISFDQILVPIGGGGLVAGVSAYLKEHAPEIKIVGVEASGARSMKA
                     AFDKGRPVKLDQIDKFADGIAVQKVGKSTYEVARKYVDRLIGVDEGWISGTILDLYSK
                     LGIVAEPAGAATIAALEVVKDKIKGQTICCIISGGNNDINRMPEMEERALIYEGIKHY
                     FVVNFPQRPGALREFVNDILGPNDDITRFEYIKRANKGTGPVLIGIALGDKTDYTQFI
                     SRLEEFDPQYINLHENDSLYKMLV"
BASE COUNT         4405 a         3540 c         3072 g         4339 t
ORIGIN      
        1 cagccaaagg aatgatcatg cgtaaatttt tactaacact cactacagtt attgctcttt
       61 ttttcacttc cacacctatt ttggcagaag atttttctgt tgcagccaag catgctatcg
      121 cagtcgaagt aagtagcggc aaaatcttgt atgagcaaga tgccgaaacc aaagcaagca
      181 tcgcttctat cagtaagaca ttgagcattt acctggtcta cgaagcactg gcaaagggtg
      241 agatcacttt agatactatg gtagatattt ctgattatcc ctatagcctc acttctaata
      301 cagaattaag taatgtaaac ctggatgcac ggtcctattc agtaagagac ctattaaacg
      361 cttctttaat cacatcatcc aatagtgcta ttattgctct ggcagaaaaa atagccggta
      421 gcgaagctgc attcgtggat cgaatgaagg caaaagtcca agaatgggga attaccgata
      481 caaaaattgt caatgtatcc gggctagata ataccgactt gggtgaaaat atttatccag
      541 gttccagtcc tgaagatgta aatatgtttt cggccctaga tgttgctatc atcgcaagac
      601 gattaatact cgactatcct caggtactcg acattacctc gctaaacgcc tacgattttg
      661 gcggctacac ttactatagt accaaccaaa tgctgagcga cggcactcac gctcgtggag
      721 gggtggacgg cttaaaaaca gggacctcaa actcggctgg ttcaagtttt cttgcaacaa
      781 ctcaacaagc tggtatgcgc attatcacag tagtattgaa tgccaatgat gggctgacct
      841 ctccagaaaa tcgctttgtc gcgacaaatg atttgatgaa ctatgtttat tctaactttt
      901 cgcttgttac actagtaaaa aaaggtgaag cctttgaaga tagtaagata aaggttttca
      961 atggcgaaaa agaaacaagt cctgttgttg cagcagcaga tttaaccgtt gttcaacgaa
     1021 aacaaactga taatgtcccc accgcaactt ttacaacgga tataaaagaa attgatgctc
     1081 ccctcaaagc agggaccttg gtcagcaaac tacaactgaa agatcaagat ctcattggaa
     1141 aaggttatat ttccgagcaa gctagtgtcg atatgattat ccctagcgat atgaaagaag
     1201 catcctggcc attctcttgg tggaatcaat ttgtccgcta tgtcaatgaa aaattataaa
     1261 aaaatagtat gtcgaacgat tttcgacata ctattttttt atcgtagagt gacaaccgct
     1321 actccttatc tccagcctcg gatggtgaga gttcctgcag aactctttat tacatatcac
     1381 ttccttacag gaagcgatgt cagtagggta atctagtctc ccagactatg ttatttataa
     1441 agaagagcga ctgccgtcgc tcctcatctc ctacttcagt ggggagtttg acgggcttga
     1501 acagctttaa agctgttcaa gttcgcggca aactatccca ctgaaccctc catctcatag
     1561 gcaatcagtc tgttgagttc gactgcgtat tccattggga gttctttggt gaatggttcg
     1621 acaaagccca tgacaatcat ctccgtggct tcggattcgg ataggccacg gctcatgagg
     1681 tagtagagct gttcttctga gatttttgag actttggctt cgtgttcgag ggccacttgt
     1741 gagttgtgga tttcattaaa tggaatggtg tctgacttgg aaatatcatc cataataata
     1801 gtatcacact cgatgtggct aatcgacttg gctgagtttt tagcaaaggt cacttgacca
     1861 cggtagttga cttctccacc gccacgggca atggatttgg acacgataga agatgaggta
     1921 cgtggggcat tgtgaatcat cttagcaccg gtatcctgga cttgaccttt attggcaaag
     1981 gcaatggaca acatggttcc acgggctcct tcaccttcca agtaaaccgc agggtatttc
     2041 atggtcgtct tagcaccaag gtttccgtca atccactcaa ctgtggcatt tttctcggca
     2101 cgggcacgtt tggttaccaa gttatagacg ttgtcagacc agttttgaat ggtggtataa
     2161 cgcatatagg caccctcgtg ggcaatgatt tctacaatcg ctgcatggag acttgctgtt
     2221 gagtaggtcg gagctgtaca gccttctacg tagtgaacgc ttgctccttc atctacgatg
     2281 atgagggtgc gttcaaactg ccctgttcct tcattgttga tacggaagta ggtttgaagc
     2341 ggaatatcca gcttgacacc ttttggtacg tagataaagg tgccccctga ccaaaccgct
     2401 gagttgaggg cagccagttt gttatctgac ggcggaacga gttttccaaa gtattttttg
     2461 aaaagctctg ggtgttcttt aagagccgtg tcggtatccg taaagataat gccgtgcttg
     2521 tcgtactctt ctttcatatt gtggtagacc acttctgatt cgtactgggc agaagcaccc
     2581 gccaggtaag cacgctcagc ttctgggata ccgatgcgtt caaaggtttc cttgattttg
     2641 tctggtacat catcccagct gcgtgctggc ttatctgacg gtttttgata gtaaacaatg
     2701 tcatcaaaat ccagttcaga cagatcagca ccccaggtct gcatcggcat tttcttgaag
     2761 gtttcgtagg atttcaaacg gaattccaac atccattcag gctcgccttt gatacgggac
     2821 atttcacgaa tgacttcttc gttcaaaccc ttaccagttg aagccactag ttccacgttt
     2881 tcatcatgga aaccgaattt gtattcccca agatcaatcg gggttggttc aattctttct
     2941 tctgacataa tataagatac taagcccctt aagaaagcaa atgaaaaaca ggaaatcgac
     3001 ttcgtgcgca aacacacgcg gagatttatc ttttttcaaa agcttttagg gcgagttcaa
     3061 tttcatttcc aatcagaaac tgaacaatcc tttctgtatg attttcattt ttgtttattc
     3121 gatgatgctc agtaagcatc ttcacttcgt tcgattgctt tcttcaagac actaaacttg
     3181 gttggaacta aagttcctaa ccaagtaacg caaggttcta atcaaccttg ctaagtggct
     3241 tactaattgg ctgattttgg taatatcgac caaaatcgct catgtcgcag ttacccttca
     3301 ttcagcacta tcacttcgtt ccagtgcttt cttcagggca ttccacggta atgtggcaca
     3361 tttgatgcgt tgggggaatt tggcaacacc tgcgaggagg gaggcgtctc ccagtccctt
     3421 ctggcgtggg tcttcttgac cttggaccat ttgtgagaag atttctgcta gttcttgaat
     3481 ctgactgatt tctttgccaa gcactgcttc agtcatcata gaagctgatg cggttgaaat
     3541 ggtgcagcca acgccgtcaa aagcaatatc ggtaatcaca tctttttcaa tcttgactga
     3601 tagttcaatc acatcaccgc aggttggatt gtggagttct aacttttcca ctccgtccaa
     3661 acttccgcgg tgacgaggca acttggagtg ttcagacaca actgccatat aaagagagtc
     3721 taatctagat agggccattg aaaaactcct ttgtcttgat gattgcctcg accaacttat
     3781 cacagtcagc cttggtattg taaatgtaaa aacttgctcg tacagtagca ggcacctgca
     3841 aatatctgag aagcggttgg gcacaatggt ggcctgcccg cacagcaaca ccttcatagt
     3901 ccagagcagt tgccacatcg tgtggatgca agtcgtccaa gttaaaggca ataactcccg
     3961 tccgcttgga caggtcctga ctgccataaa tggtcaagcc tggaatagcc tgcaattttg
     4021 gaaagacata gtcaaccagt tctgcctcgt gggcctggat agcgtccata ccaatttcgg
     4081 tcaggtaatc aacggctgct cccagaccaa tcgcacctgc aatattgggc gttcctgcct
     4141 caaacttcca aggcaattcc ttccaagtag ctgactgctc atagacaaag tcaatcattt
     4201 caccgccgaa ttcaactggc gacatgagat tgagcaattc ttccttgccg tagagaacgc
     4261 cgattcctgt cggtcccaac attttatgac ctgaaaaggc aaagaaatcc acgtctaatt
     4321 cttgcacgtt gacagccatg tggggaactg actgggctcc gtccaccacc aagtaggcac
     4381 cgacttgatg caccagctct gctatttccc caataggaac cacgccacct aggacattgg
     4441 atacgtgggc cagggagacg aacttggtct tttcggagag tatggacttg aggctatcca
     4501 catccaactc gccgtctttt agtggaacat agcggagctt ggcacctatt tgctgacagg
     4561 cttgctgcca agggatgata ttggagtggt gctcttggac cgagattatc acttcctggt
     4621 ctggctggag aatttccttt gcaaactgag ctacccagtt gagactggtg gtcgttcctc
     4681 tggtaaagag aatttccttg ctagacttgg cctggataaa atcagccacc ttctgccgag
     4741 ccgcctcgta gcgagccgtt gcccgttctg acagagtatg aactccacgg tggacattgg
     4801 cattgtctgt ctggtagtaa tcttccagta catccagtac ctgttgcggt ttttgggtgg
     4861 tcgccgcatt gtccaaatag accagcggct catcgttaac aacttggtct aggattgaaa
     4921 aatccttgcg aatgctttca aaatcaatca tcttatctct ttgttagttt ttcttcaatc
     4981 acggcaatca attggtcacg aacttccttg acaggaattt cggtaatgac tgcgccaagg
     5041 aaaccgcgaa caaccaagcg ttcagcagtt gcttggtcca gaccacgact catgaggtag
     5101 tacatgtctt ctggatccac ctgaccgatt gaggctgcgt gtccagctgt gacctcattc
     5161 tcatcgataa ggagaattgg gttagcatct gagcgagcct tgtcagacag catgaggaca
     5221 cggctttcct gctgggcatc cgcaccttta gcaccacgga caatgtgtcc gatgccattg
     5281 aaggtcaagg ttccgctttc taagataacc ccatgttgca ggatgtgacc gaccgaatta
     5341 tgtccatagt tggtcacgcg cgtatccaca ccttggacct gacgacctga tgacagtccg
     5401 acaactttga ggttggcatg gctaccgttt ccttttaatt cactgtccaa atcggcaacc
     5461 acatttcctt cgttgagcag accaatcgcc cagtcaatcg ttgcatcgtt tccgagatag
     5521 ccgcgacggt tgaggtaggt atccaaatgc ttgccaagac ggtcaatagc cgcaaacttg
     5581 atttggctac cagcaagggc gattacttcc acgacaatat tggctgaagt cgttgctgcg
     5641 ccgtcgccca aactttcaaa gcgttctaga taattaagct tggcattttt tccagcgatg
     5701 atgaggacac gtttgttaaa ggcaactgga ctggtgctgt cttggtagaa aagggcctca
     5761 actggctggt cgatttcaac attatctggc acgtaaagga cagctgttgc gttaaaataa
     5821 gctgtgttat aggcggctaa tttgtgttca tcataagcta cagctactcc aagatatttc
     5881 tcgataacat ctggaataag atccatagct gaggcaaagt ccgtaaagac cacacctttt
     5941 tctacaaggt caaccggcaa ctgttctaga atcgtttggc tgccaacttg aaccaacata
     6001 ggattgtcac cgatagctgt aaaatctgga actgccccga tttcatcatt tgtagctagg
     6061 cttccgtcac ctagattcca acggtgaaac ttgacccgct cgataaccgg caagtccagc
     6121 tctgctattt tgtcaaaagc cttaagacgc aggtctgtca accaagttgg ttctgcctgc
     6181 aaggctgaaa attcttgaat cttttctttg gtcatagctt cctccaaaga cttaaatgtc
     6241 atcttctttg tagtcgatgc caagctctgc tgcgacttgg acataacctt ctttttccaa
     6301 gcgttgtgcc aattctggtc cgcctgaaag cacgacacgg ccttccatca tgacatggac
     6361 aacatcagga gtgatgtagt tgagcaagcg ttggtagtga gtaataatca tggcaccaaa
     6421 gccttcacca cgcatagcat tgatcccctt tgacacgact ttaagggcat caatatccaa
     6481 tcctgagtca atctcatcaa gaagggcaaa agtcggttcc aacatgagta attgcagaat
     6541 ctcattgcgt tttttctcac cacctgagaa accttcgttg aggtaacgct ctgccatttc
     6601 ctctttcatg ttaaggagct ccatcttttc atccaactta gtaatgaaat cacgaacaga
     6661 aatcttgtct tcgtcttcct taccagcgtt cattgcggca cgaagaaatt ccgcattagt
     6721 aatccctgga atttctgacg ggtattgcat agccaagaaa agacccatac gggcacgttc
     6781 atcgacttct aattctaaaa tattgacacc gtcaaacaga atctcacctt gggtaacttc
     6841 gtagcttgga ttgcccatga tggctgctga aagggtggat ttccctgttc cgttcggtcc
     6901 catgatggct gcaatttcac ctgttttaag ggtcaggttg acacctttta ggatttcctt
     6961 accttcgatt tcaacatgaa ggtctttgat ttctaatact gacatgctgt gctccttttc
     7021 atttttgtcc tcttcaaaaa ccacattaac tgaccaagct aactagatac accgataaga
     7081 ctcaaccttg gcagtgggga aagaactcga ccatccatag aagagttcgt tttcccaccc
     7141 ccgcacagtt gattaggtca gatttggagt gtaaaacacg aacaaatctg ccaatcaacc
     7201 actgcgctga gatgttgaca ctaacgttga gaagcggtac ggggcttgag cccagcctca
     7261 ctccactgga ctgttaaacc caatcaacca ctactgctct gagatgttga cgctaacttt
     7321 aagaagcggt gcggggcttg aacccagcct cttttcttgt taatgatgat tttcagagag
     7381 tgttaatcta taaaatagtc ttttctgaca attttaatta accatatcca ctatattata
     7441 tcaaaaaaag agcctgacgg ctcttatctt gtttagaaag attcttattt tctttttttc
     7501 tcttcacagc actttttata ctttgcgatt ttttcttgac ggtaactact attaccaata
     7561 aaccgaagaa gattgagcaa tggagttcga ttaataccaa agatgccaat caattcacag
     7621 agaatctcaa ttcccagtcc catggtcacc aataggagaa taccccctat tcgactcgaa
     7681 acattgagca aaagagaggt cagggagaat aagaaagaga tggtgtaaat caccaatact
     7741 gtgccacgat gagtaagtcc cagagagagc aagcgatgat gcagatgcat cttatctgct
     7801 tcatagattt tttgcccaga caattttcga cgaatgatgg ctactacagt atccgtaata
     7861 ggcactccaa gaataatcat tggagtaacc actgcaacag ctgtcgaatt tttcagtcct
     7921 tgaagggaca agactccaat cataaacccg atgaaaaggg ctcctgtatc gccaagataa
     7981 atgatagcgg gattatagtt ataaggtaaa aatccaacaa tcgctgcgac caaaacaaag
     8041 atggttaagg tcaaaaaaat attgctatca tgcaaaaaga aataagacac aattcccatc
     8101 gttgtcaggg aaataatcga tactcccgaa actagaccat ccagaccatc aatcaagttg
     8161 actgcattcg taatagaaac aatccaaagg accgttaata gaaaagagag ccagacagga
     8221 aattgaagga aaggtcctcc aaaaggaatc ttaaagctat caaaacgaaa ttccgtaaaa
     8281 atccaaatga tcgtcgctgc agctagaata ccaaacattt taggagcagg ctttagctcc
     8341 ttgacatcat caatgaatcc cgtaagaacg ataatgctgg atgctaggac caggggccag
     8401 atataatgca agtaagtgcc atggtaattg acacgggtaa caattcctgg taaaaaccat
     8461 aggacagaaa tggtaaatgc cacaaagata gccagacctc ccgctgaagg catgggcacc
     8521 ttatttattc gccgtgcatt gggattatcg actgctccaa ccctcaggga cataaaacga
     8581 accaaggggg ttgcaatagc tgatatgacc atagttgtaa taatgaccat tatgtatttt
     8641 agagcaaaag gaatcatact gtcggaacct tcctaagctc ctcgattgcc acaagcggaa
     8701 gcatcaaagt tccgtgttct tgtaaagcag gtctggtcaa cttagtatca ttggtaaatt
     8761 ccaacattct tgagagaatg tagcctggat actgcttgga acgattttct acattgataa
     8821 gaactgtcaa gtagtagtga ccatccattt tatataattc cgattcttct actggataat
     8881 caaccgtacc aacaaaagta aacagatcct ctatcgttgg aaattccaaa atatagtaaa
     8941 tatagcgctc ctgctcctct tcatctgctt cttcctcttg ctctacctct tccaaatgac
     9001 gaactgctgt tgcatccggt gcacttttct cacgaacggt ttgctccaaa ctcttgaaaa
     9061 actcatctgg agtcatactt gcgacatcac caagttccga caaatctgta aattcatcaa
     9121 aattcaagtt ctgatccaaa tcagatttgg taacaaagat gtccacccga tctggcttcg
     9181 gagtcacacg aaaactcaac ataccgcttt ctcggaaagt cattggtaaa tccaattcat
     9241 ccaaaacagt atagaagaac tcctctgtct tttcttgcgg aatgagaaag tccgaaagtt
     9301 ccattcctct ctcttccaaa tcatctaatt ttatagtgat tttcaaggtt gaatcactaa
     9361 tttgctttac tttcataact acctcattca ttgattcatc aatttcttaa aattgattga
     9421 tcattttcaa tactcataca tatcttccac cattatacta aaaccaagct cgaaagacaa
     9481 aagaaaagca ggtctccctg ctcttaaaat aaaaatgtaa taaaggcata aaccaataaa
     9541 atcgccccta aaatgatgcg gtagtaacca aaaaccgtga aatcatgttt tttaacaaag
     9601 tctgtcaaga aacgaataac aactaaggat actaagtaag ccgtcatact agcgactagc
     9661 aagatccata cctgctccat attcaggcta ttgccatcta agaaatattt aacagccttc
     9721 aagccactat aaccaaacat ggttggaatc ccaaggaaga aggtaaaatc tgccgccaca
     9781 gatcggctgg tccccaaaat aatcgctccc agaatggtcg cacctgagcg actagtcccc
     9841 ggaacgatgc ttaagacctg aaaacaccca atcaacaagg cagttttata agacattttc
     9901 gctaagtccg tcacctgtgg ctctacacca ctgttacggt tctcaatcca aataaaggca
     9961 ataccgtaga caatcaaagc aatcgcaatc ggtaccataa aattgaagtg cgcttcaaac
    10021 caattatcca acgggactgc aattaggatg gacggaatac aggcaatgac aaccttggcc
    10081 cataattgcc aagtcaattg aatatcacgc ttggtttttc caggctgaaa tggattcaat
    10141 tttttaaagt aaatagtcat aactgctaga attgctccta gctgaatgac aatattaaac
    10201 atttctagga agttcttgct ttggtttaat ttcacgaact cttgaaccaa aattaaatgc
    10261 cccgttgaag aaactggcaa ccattccgtc accccttcaa tgattcctaa aaatatagcc
    10321 ttcaacaatt ccaatagcat aaaaatctcc ttttcatcaa ttctctacat tatatcataa
    10381 aaaaactccc tattcatagt acaaggatat tgaaatttgt cagaattttt aataaaatgg
    10441 tgtaatagca ttttaaagga gacattatga aacgtaaact cagtatattt ctgctgaccc
    10501 taatcgctgt tttttctgta acaacagggg ttcgggcaga cgaatacctg cgggtcggta
    10561 tggaagctgc ctatgcacca tttaactgga cccaagaaga tgatagcaac ggtgccgttc
    10621 ctattgaggg aaccaatcaa tttgccaacg gatatgatgt tcaggttgca aaaaaaatcg
    10681 ctgcatccat ggacaaagaa ctcttggttg ttaaaaccaa gtgggaaggc ttagtccctg
    10741 ctcttacatc tggtaaaatc gatatgatta tcgccggtat gagcccgaca gaagagcgca
    10801 agaaagaaat cgccttctca gatagctact acacttcaat tcctaccctg gttgttcgtt
    10861 ctgatagtca gtacgcaaac gcaaccagct tggcagattt tgctggcgca aaaatcactg
    10921 cccagcaagg ggtttacctc tatgatttga ttgaccaaat tgaaggggct aacaaacaga
    10981 ctgccatggg agatttctca caaatccgtc aagctttaga atctggcatt atagacgcct
    11041 atgtttctga acgtccagaa ggtcgtacag cagaagctgc aaataaagct ttcaaaatgg
    11101 ttgaattggc agacagtttt gaaaccaatg ccgaagacgt gaccattgct gtcggtatgc
    11161 gcaaagatga cgagcgtatc gctcaggtca acaaagtctt agcaactatt tcagaagaag
    11221 agcaaatcgc acttatggat gatatgattg aaaaccagcc cgttgaagaa gccagcgagg
    11281 gcgaaacacc tagtttcttc gcccaagttt ggaatattgt tgttaacaac tggcaacaac
    11341 ttctgcgcgg aactgggatg acattactca tttccatcct cggtacaatt atcggtactg
    11401 ctatcggtct cctcatcggt gtcttccgta cagctccaaa agcagcaaac aaggcgcttg
    11461 ctattggtca aaaagtgctc ggttggatta tcaatatcta catcgaaatt ttccgtggta
    11521 cgccgatgat tgtacaatcc atggttattt actatggtac cgcccaagca ttcgggctca
    11581 atcttgaccg cacacttgcc gctatcttca ttgtatccat caacacaggt gcctacatga
    11641 gtgagattgt ccgcggtggt atctttgccg tcgataaagg ccaatttgaa gctgctactg
    11701 ctctcggatt tactcataat cagaccatgc gtaagattgt ccttccacag gttattcgta
    11761 acatcttacc agcgactggt aatgaatttg tcatcaatat caaagatact tctgtattga
    11821 acgttatctc agttgttgaa ctctatttct caggaaatac tgtcgcaacc caaacctatc
    11881 aatatttcca aacctttacg gttattgcta ttatctactt catcctaacc tttactgtga
    11941 cacgtatctt acgcgcagtt gaaaagcatt ttgatacaga tacatacaca acaggtgcaa
    12001 accaaatgca agtcgaggtg ccacatgact aaaaatgtaa ttcttgaaat caaaaatcta
    12061 aagaaatcat acggacaaaa tcaagtcctc aaagacatct ctattagcgt tgaaaagggc
    12121 gaggttatct caatcatcgg ttcatctggt tcgggaaaat caaccttcct ccgatctatc
    12181 aaccttttgg aaacaccaac agaaggacag attctatacc acggacaaga tgttttggat
    12241 aaaggatatg acttgacgac ttaccgtgaa aaactaggta tggtattcca atccttcaac
    12301 cttttcaaca atctaaatgt attggaaaat gccattgtag cacaaactac ggtactgaaa
    12361 cgagatcgag ctgaggcaga gaaaatcgcc aaggaaaacc tcaacaaggt tggcatgacc
    12421 gaacagtact ggcaagccaa accaagtcaa ctctctggtg gacagaaaca acgcgtggcc
    12481 attgcacgtg ccctatctgt tgacccagaa gttatcctct ttgatgagcc gacttctgct
    12541 ctcgatccag agatggtcgg ggaagttctc aaaaccatgc aagatttggc aaaatcagga
    12601 ttgacgatgc ttatcgtaac tcacgaaatg gaatttgccc gtgacgtatc tgaccgcgtt
    12661 atctttatgg ataagggtgt catcgccgaa gaaggcaacc ctcaacaaat ctttgaaaat
    12721 ccacaagaag aacgcacacg tgaattcctt cagcgttttc ttggttaaac tcaatctgtt
    12781 ccatagaaga ccattactta ccagtttcaa aactggtaag tttttttgac taaaaaagag
    12841 aggaatcgca aaattcctct ttttggacat ctctaaatga aaccatttag attagttttc
    12901 aaatttcttg tggtttttgt cgtaaaaatc aatcaaaccc aaggcagttg caaatgaaat
    12961 attgtcaatc ttagcgcgac cttgtgcaag agcgataact gacatttcac gagcatttgt
    13021 ttccttactg atacggtaac ctgtgatttt cttttcacga acccagccga caacagcggc
    13081 tactttttcg taactagtca ttagaaaccc ctttcttttt tattcgtgca atttagtata
    13141 atatgtttta acctattttg tcaagtaaaa tgttcgtttt ttaccatcat tttgccctaa
    13201 gagatgatag tatttgcgtc cttatgtctt cgaccccctc cggattcccc ggaaggaaga
    13261 tagtttgatt acctccttgt gcaaaattat tgagagtatc caagtattgg ttggtcagca
    13321 agatagacat aatctgctct tcagataggc taacatttga ttctttcagt tcacgaatcg
    13381 aatctgccag tccgtctaca atcgccttac gttgttgtgc aatacctaca ccatgcaagc
    13441 gatccttctc agcctctgct tctgctgctg tgacaatttt aatcttgtca gcttctgcca
    13501 attcttgggc cgcaacccgt ttccgctgag ctgcgttaat ttcattcata gattgcttaa
    13561 cctcggcgtc tggctctacc ttggtaatta aggttttgac aataacataa ccgtaggttg
    13621 acatctcttc tgctacttgt ttttgtacct caagtgcaat ctcatccttt ttctcgaaga
    13681 gctcatccag ggtcaattta ggcacagatg aacgcagagc atcttcaata taggacttaa
    13741 tctgtgcttc tgggtgcatg agcttgtaat aggcatccgt cacattattt tcatttactc
    13801 gatattgagt tgccacattc attgtgacaa aaacgttatc ctgcgtcttg gtttctacca
    13861 caatttcact ttgcaacatc cgcaattgaa tgcgagctgc aatgacatca actccaaatg
    13921 gtattttaaa gttaatacct gaagtagatg ttttttggta tttcccaaag cgctcaataa
    13981 tagcgaccgt ctgctgcttg acaacgtata gccctgaagc aatcaaaatc aaagcaatca
    14041 gtacaaagaa caagaaacta ccaataaaaa caattggacc aagcaccata atgacctcct
    14101 aaactagcat tttataaagc gaatcatttt catgaagatt gatgtactgg ggatcaaact
    14161 cttccaagcg agaaataaac tgcgtataat ctgttttatc tcctagggca ataccgatta
    14221 gaaccggccc tgttccctta ttggcacgtt tgatatattc aaaacgagta atatcatcat
    14281 ttggccctag aatatcattt acaaattcac gaagagcccc tggacgttgt ggaaaattaa
    14341 caacaaagta gtgtttaatt ccctcgtaga taagcgcacg ttcctccatt tccggcatcc
    14401 tgttgatgtc gttattacca ccagaaatga tacaacaaat ggtttgcccc ttgattttgt
    14461 ccttgactac ctcaagagct gcaatcgttg ctgctcctgc tggctcagca acaataccca
    14521 gcttagaata gaggtctaaa atagtcccgg aaatccatcc ttcatccaca ccaatcaggc
    14581 gatctacgta tttccgagcc acttcgtagg tcgacttacc gactttctgt accgcaatac
    14641 cgtcagcaaa tttatcaatt tggtctaatt taaccggacg acctttatca aaagccgctt
    14701 tcattgaccg tgccccactt gcttcaacac caacaatctt aatttcaggt gcatgttctt
    14761 tcagataggc cgaaacgcct gcaaccagac cacctcctcc tatgggaact aaaatttggt
    14821 caaaactaat ggtttgctct tccgcttctt ccaagatttc ataggctact gttccctgac
    14881 cagcctgcac attttcatca tcgaatgggt ctataaatgt tttcccactt tcctgagtat
    14941 aatcttgtgc tgccttggct gactcatcga aggtatcacc tacgagccga atctctacgt
    15001 agtctcctcc gaaaaattta acctgcccta ttttttgttg cggagttgta atgggcataa
    15061 aaatcgtagc aggaatttgc atttcctgac aggtgtaggc cacaccttga gcatggtttc
    15121 cggccgaagc acagaccact ccgcgtgact tctcatcatc tgtcaattgt gaaatagcat
    15181 aataggctcc tcgaatttta aaagagcgaa cacgctgttc attttctctt tttaaataaa
    15241 tagttgcacc atatttttcc gataagtatc gactataatc caagggggta cgtactacca
    15301 cgcgcttaag aacggagtat gcttgttcta cattttttgc tgtaatcata gttcca
//
LOCUS       DASGCC010000047        15154 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.047, whole genome shotgun sequence.
ACCESSION   DASGCC010000047 DASGCC010000000
VERSION     DASGCC010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15154
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.047"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            127..576
                     /locus_tag="U1404_000984"
     CDS             127..576
                     /locus_tag="U1404_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5347950.1"
                     /translation="MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAE
                     RSEVETFVKDIEAELRISKSVASNLVKRMEKNDFIRVLPSQFDRRYKQLVLTEKGRSK
                     ICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV"
     gene            569..2275
                     /locus_tag="U1404_000985"
     CDS             569..2275
                     /locus_tag="U1404_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347951.1"
                     /translation="MFKEAILRYKWYALASVLLTSIVVATTLMQPSYLQDVLTAVLAN
                     DKEEIVRVGKFLLLIAGIGLLAGLTNTIMAAKISQGVSADIREKTFRKIQSFSYANVE
                     EFNAGNLVVRMTNDVNQIQNLVMMLFTILMRVPLLFVGAFIMAVRTLPELWWIIVLMV
                     IIIMGIMAVVMGLMGPRFGKFQSLMDRMNSIAKENLRGIRVVKSFVQEKNQYAKFKEV
                     SNELLDLNLFIGYGFSILQPLMMFISYMAIFVSLYLVSGMLDTNIEAVGGFTSFMSYL
                     MQIMFAIIMTSFMGMQASRAAISIKRLSEVLDTEPAMTFKDGAKEDLDGRIVFDNVSF
                     TYPHDTEPTLKNISFEIESGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTVSIGGRDL
                     KDISQETLRDTVSIVLQKAILFSGTIADNLRQGAPGADLERLERAAGIAQAKEFIDRL
                     DDTYESQVEERGNNFSGGQKQRMSIARGVISDPKVLVLDDSTSALDAKSEKLVQEALN
                     HDLKGTTTVIVAQKISSVVKADKILVLDEGRLIGQGTHAELVATNDVYREIYETQKGR
                     EE"
     gene            2276..4060
                     /locus_tag="U1404_000986"
     CDS             2276..4060
                     /locus_tag="U1404_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000859866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5347952.1"
                     /translation="MKTLRFFWFYFKRYKLSFAVIFLAIVAATYLQVKTPVFLGNAIA
                     EMGKIGQAYFMANQAGQADFQPDMADFNGVMLNLFFAYAATVVASLIYTLLFTRIVAH
                     STNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
                     VGMVIMMFRQDTRLALVTIASTPVALIALVIIIRLSRKYTDKQQAAVSKLNAYMDEKI
                     SGQKAIIVQGVQEETIDGFLELNEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFA
                     GSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQVAASWAELQLAFTGAHRIQEMF
                     DEPEEVRPQNAPLFIELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGS
                     GKTTIMNLINRFYDVNGGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIR
                     FGDESISQEMVETAARATHIHDFIMSLPEGYETFVTDDENIFSTGQKQLISIARTLLT
                     DPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEIIVLKDGK
                     VIEQGNHSQLLKLNGFYAELYHNQFVFE"
     gene            4162..4605
                     /locus_tag="U1404_000987"
     CDS             4162..4605
                     /locus_tag="U1404_000987"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000701975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEM5347953.1"
                     /translation="MKIRGFELVSQFTDENLLPKRETAHAAGYDLKAAERISLEPGEI
                     KLVPTGVKAYMQANEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFAQM
                     RNITEETVVVEAGERMVQAVFAPFLLADGDQADGVRTGGFGSTGK"
     gene            4612..5145
                     /locus_tag="U1404_000988"
     CDS             4612..5145
                     /locus_tag="U1404_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5347954.1"
                     /translation="MQILFVRHSEPDYSMFDQHDNPRLYAGFGRDLAPLTEKGRTLAQ
                     EIASNPIFSQAQVVVASSVTRALETATYIAHAQQLPLLVEPFFHEWRPDMTGQNASQD
                     EAVLAHRLFLENSGAVPESSPVRYETAAEMRERFLQALEKYKAYDRIVIVCHGMLIRQ
                     FVPKETIAYCEILEYTL"
     gene            5152..6522
                     /gene="radA"
                     /locus_tag="U1404_000989"
     CDS             5152..6522
                     /gene="radA"
                     /locus_tag="U1404_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEM5347955.1"
                     /translation="MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEV
                     KNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFNRVLGGGVVPGSLVLIGGDPGIG
                     KSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
                     IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTK
                     EGTLAGPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVL
                     NPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRAS
                     LIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFI
                     GEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVL
                     QKVFNL"
     gene            6643..7137
                     /locus_tag="U1404_000990"
     CDS             6643..7137
                     /locus_tag="U1404_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEM5347956.1"
                     /translation="MSYFQNFMKANKAYVDLHGDYHLPLRPKTKVAIVTCMDSRLHVA
                     QALGLALGDAHILRNAGGRVTEDMIRSLVISQQQLGTREIVVLHHTDCGAQTFTNEEF
                     AVQLKRDLGVDVAGQDFLPFTDIEESVREDIALLKQSPLIPDDVEISGAVYDVDTGRM
                     TEVI"
     gene            7345..8103
                     /locus_tag="U1404_000991"
     CDS             7345..8103
                     /locus_tag="U1404_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HEM5347957.1"
                     /translation="MSDNRMKYTIDSNMQFPLVEIALEAGESAYIQQGSMVYHTPSVT
                     LNTKLNARGGSGFGKLMGAIGRSMVSGESMFITQAISNSDDGKIALAPSTPGQVIALE
                     LGAEQYRLNDGAFLALDGSAQYKMERQSVGKAFFGGQGGLFVMTTEGRGTLLANAFGS
                     IKKLTLDGGSITIDNAHVVAWSRDLDYNIHMENGFLQSIGTGEGIVNTFTGYGEIYVQ
                     SLNIETFAQVIGNHIVGAGGDGGGGSTSLLDAIF"
     gene            8281..8727
                     /locus_tag="U1404_000992"
     CDS             8281..8727
                     /locus_tag="U1404_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HEM5347958.1"
                     /translation="MKVRIEFDDSLDHVEVVIRTSQLGPEIEQIQQALQQVSRPSLVF
                     YKGSSEYFLSLGDILFFETDGTKIFAHTGDDAYEVKMKLYELGEHLPIYFCRVSKSTI
                     ANARAVYSLDKSFSGTSRISFYQTHKEVHVSRHYYHLLKEKLREVR"
     gene            8732..9391
                     /locus_tag="U1404_000993"
     CDS             8732..9391
                     /locus_tag="U1404_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347959.1"
                     /translation="MKRLLIGAAVIGLAVLVLLRDSLGLHLAMPFWTTVWFVLTFVTG
                     FHRLVKLDWLASIFCFGLAFIAANSVYEWVEFGTWNMFLSLVLLCLGLKLIFKPRKRR
                     LAHGVVTGVIGDKGRDTAFGSSTRYIHEENFIHDSVDVAFGSSTVYFDQAVILGNKAD
                     FHIDAAFSNITLYLPADWQAVVELDSAMSTTNNYASEPKEKVLLVTGDMAFSTLNIYS
                     M"
     gene            9483..10763
                     /locus_tag="U1404_000994"
     CDS             9483..10763
                     /locus_tag="U1404_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5347960.1"
                     /translation="MKKILKNATYLWVLTADMLSNFGDVVYYLALMNYVLLVPNSRLA
                     LAIVTFSEIFPSFMGLFTGYLADKTVNKISTIKLTLLFRVLLYLILGFCMGFEPALWI
                     VVVAATFNVFADFAGFYENGLYTPLGLRVAPKEEREQYSAFRQTVTSLLNIAFQALSA
                     LLVGLLSYQNLAFLNAGTFLAALLIMQLLTPVFRKLLTEQPLKIAEQSSQTEQKTKRP
                     GILASFKQAIVELRKIPEFRLVLITTPLINACGAILYPILVLLISEDPGLVFLNVETT
                     LALTILIFFIGHILGSTLVFTLFKNTSMVTLEVAATFSLLGVFVGMLLHQLPIIFFFL
                     TTMGISSGASGPKFNAKFVNSMPEEQLATIGGAVSTYFMLGQAFTRLLVSGLVLILTV
                     NQISGLFLAATGLLVLYILYWLARNQKTPQNQSV"
     gene            10835..12289
                     /locus_tag="U1404_000995"
     CDS             10835..12289
                     /locus_tag="U1404_000995"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEM5347961.1"
                     /translation="MTKPIRVRYAPSPTGLLHIGNARTALFNYLFARHHGGTFLIRIE
                     DTDRKRHVEDGERSQLENLRWLGIDWDESPETHEQYRQSERLDIYQKYVDQLLAEGKA
                     YKSYVTEEELAAERERQEAAGETPRYINEYLGMSEDEKAAYIAEREAAGIVPTVRLAV
                     NETGIYKWNDMVKGEIEFEGGNIGGDWVIQKRDGYPTYNFAVVVDDYLMKISHVIRGD
                     DHIANTPKQLMVYEALGWEAPEFGHMTLIINSETGKKLSKRDTNTLQFIEDYRRKGYM
                     PEAVFNFIGLLGWNPGGEEEIFSREQFIQLFDENRLSKSPAAFDQKKMDWMSNEYIKN
                     ADLETIFNLAKPFLEEAGRLTDKAEKLVELYKPQLSSADEIVGLTDLFFSDFPELTAE
                     EKEVMAGETVPTVLNALKEKLEAMTDEDFQPDNIFPQIKAVQKETGIKGKNLFMPIRI
                     AVSGEMHGPELPNTIYLLGREKSIQHIDNMLKSL"
     gene            complement(12344..12844)
                     /locus_tag="U1404_000996"
     CDS             complement(12344..12844)
                     /locus_tag="U1404_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5347962.1"
                     /translation="MEIWNTYTADGHLTDHTLTRGESIPDGLYHLVVECIIRHHDGST
                     LFMKRDSTKPSYPDYYEATAGGSALFGEIAEQAILREVREETGIELTADQLRHHTHFV
                     AHDDQCIFHCYWAETDWDKSTIQLQSNETSNYIWVPQENLKNFLETELVIPRQKDYVE
                     RLFLKS"
     gene            12965..13840
                     /locus_tag="U1404_000997"
     CDS             12965..13840
                     /locus_tag="U1404_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5347963.1"
                     /translation="MQTIIPHLWYDTEAKEAVAFYVELFGGKIDWTYTITDTPSGDSD
                     LIQFQLGDMTLAAISAGPYFKLNESMSLMVNVASKDEVTRLYQVLSEGGRVLMPLGEY
                     PFSPYYVWLEDRFGLSWQLSYAPDLDKPYQFDICLLFSQEQVGLAQPMLDYYKDKLHQ
                     ARLGRLSYYGEGEAAVAAAKLNYAELFIGDQKIIAMDHGYGGVASFNEAFSFMVYVDS
                     QEEAESWYEKVSAVPEAEICGWAKDQFGISWQIVPRILMEAYDTANPEKVKAVNAAVM
                     TMKRLDIAAIQALLN"
     gene            13946..14464
                     /locus_tag="U1404_000998"
     CDS             13946..14464
                     /locus_tag="U1404_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor NadR"
                     /protein_id="HEM5347964.1"
                     /translation="MKATERRKKILSLLRESPYPLAANYLAKEFGVSRQVIVGDVALL
                     RAEGEAVLATPRGYLLQSSLPSTEGAYIRKIACQHGPEEVEKELTILLEGGAQILDVE
                     IEHPIYGLLSGKLNIASLEDRDHFLDALGQYQGVLLSNLTEGVHTHTVSFPSVQAYNE
                     LSAALKHAGILL"
     gene            14544..15092
                     /locus_tag="U1404_000999"
     CDS             14544..15092
                     /locus_tag="U1404_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347965.1"
                     /translation="MSQLTLSSKNSVKQLSISAILTAFAILIPLMMPIKIIIGPASYT
                     LASHIPLFIAMFISPATAIFVALGSSLGFFLAGFPIVIVFRALTHLFFLTLGAVLVKR
                     FPTLMDSKRFLLLGIGLNLLHGLGEYIVVMVLTSGQQTSATYWITMLGLVGVGSAIHG
                     LLDFSLAYYFWKILKERKIYQP"
BASE COUNT         3913 a         3191 c         3729 g         4321 t
ORIGIN      
        1 tcgagtaagt aatggtgctg aaataacaaa atattttcag aaaagagcaa acggaataat
       61 tgacaatagt tcctaagaga actataatag ttctcatggt aattattttc gtagaaagga
      121 gctattatgg gacatactat tgcagatttt cggaatctat taaatcagat tgaacaaatc
      181 agtgaaacca ttgcaaagga atatgatgtg gagcacctag ctggaccaca gggatgggct
      241 ctgcgtttca tagcagaacg gtctgaagtt gaaacctttg tcaaagacat tgaagcggag
      301 ttgaggattt ccaaatccgt tgccagcaat ctagttaagc gaatggagaa aaatgacttt
      361 attcgggttt taccttctca gtttgacaga cgctataagc agttggtctt gacagagaaa
      421 ggtcggagca agatttgtca cctaaaatcc ttccatgagg agatgcacca ttctctcttt
      481 cgaggtattc aaaaggaaga atttgatttg atcagacagg tagccgatca attaaaagat
      541 aatattcaac actataagga gaagaatcat gtttaaagaa gccattttac gttacaaatg
      601 gtatgccttg gcatcggtct tgttgacgtc tattgtcgta gcaacgacct tgatgcaacc
      661 tagttattta caggatgtat tgactgctgt cttggccaat gataaggaag aaattgttcg
      721 tgtcggtaag ttcctcttgc tgattgcggg aatcggtctc ttggctggtc tgaccaatac
      781 aatcatggca gctaagattt ctcagggagt gtctgcggat attcgtgaga agacctttcg
      841 gaaaattcag agcttttctt atgccaatgt agaggaattt aacgcaggga atttggtggt
      901 tcgtatgacc aacgacgtca accaaattca gaaccttgtc atgatgctct ttacgatctt
      961 gatgcgggta cctctgctct ttgttggtgc ctttatcatg gcggtgcgca ctttgccaga
     1021 actttggtgg attatcgtgc tcatggtcat catcatcatg ggaatcatgg cagtcgtgat
     1081 gggcttgatg ggaccgcgct ttggtaaatt ccagtccctg atggacagga tgaacagcat
     1141 tgcaaaggaa aacctccgtg ggattcgtgt ggttaagtcc tttgtacagg agaagaatca
     1201 atacgctaaa tttaaagaag tatccaatga gcttttggat cttaacctct ttattggtta
     1261 tggtttttct atcttgcaac ctttgatgat gtttatctcc tacatggcga tttttgtgtc
     1321 gctttatctc gtttcaggga tgttagacac taatatcgaa gcagttgggg gctttacttc
     1381 ctttatgagt tacctcatgc aaatcatgtt tgccattatc atgactagct ttatggggat
     1441 gcaggcttca cgtgctgcta tttccattaa acgtttgagt gaggttttag atacagagcc
     1501 agcgatgacc tttaaagatg gtgcaaaaga ggacttggat ggtcggattg tctttgacaa
     1561 tgttagcttc acctatccgc atgataccga gccgaccttg aaaaatatct cctttgagat
     1621 tgagtctggt cagatggtcg gtgtggtcgg tgcaacgggt gcgggtaaat caacactagc
     1681 tcagctcatt ccgcgtttgt ttgatccaca ggaagggact gtgtcaattg gcggtcgtga
     1741 tttgaaagac atcagtcagg aaaccttgag agatacagtg tctatcgttt tgcaaaaagc
     1801 tattctcttc tcagggacca ttgcagacaa cctgcgtcaa ggtgcacctg gtgcagattt
     1861 ggaacgtttg gagcgggccg caggtattgc ccaagccaaa gaatttatcg accgcttgga
     1921 tgatacctat gagagccaag tagaagaacg tggaaataac ttctcaggtg gtcagaaaca
     1981 gcggatgtcc attgcgcgtg gggtgattag tgatcctaaa gtcttggtgc tagatgattc
     2041 gacatcagcc ttggatgcca agtctgagaa gctggtccaa gaggccctca accatgactt
     2101 gaaggggaca acgacggtca tcgttgctca gaagatttct tctgttgtca aagctgataa
     2161 gattttggtt cttgacgaag gccgtctgat cggtcaaggt acccacgcgg agttggtagc
     2221 gacgaacgat gtttaccgtg aaatctacga aacacagaaa gggagggagg aatagatgaa
     2281 gacattacgt tttttctggt tttattttaa acgctataaa ctgtcctttg ctgtgatttt
     2341 tctagctatt gtggcagcga cctacttgca ggtcaagaca cctgttttcc ttggaaatgc
     2401 cattgcggag atggggaaaa ttgggcaggc ttactttatg gccaatcaag ctggtcaggc
     2461 tgactttcag ccagatatgg ctgattttaa cggggttatg ctcaatcttt tctttgccta
     2521 tgcggcgacg gttgtggctt ccttgattta caccctcctc ttcacgcgta tcgtggctca
     2581 ttcgaccaac cgtatgcgta agggcttgtt tggcaagctg gaacgcttga cagttgcctt
     2641 ctttgatagc cacaaggacg gggatattct ttctcgcttt accagtgatt tggacaatat
     2701 ccaaaacgct tttaaccagt ccttgaccca agtggtgacc aacatcgctc tttatgttgg
     2761 tatggtcatc atgatgttcc gtcaggatac tcgcttggcc ttggtgacca ttgcttctac
     2821 gccagttgct ttgattgccc tagtgattat cattcgcctg tcacggaaat atactgataa
     2881 gcaacaggct gcggtatcta agcttaatgc atacatggat gagaagattt ccggacaaaa
     2941 agcgattatt gtacaaggtg tgcaggaaga gacaattgat ggtttcttgg aactcaatga
     3001 agaagttcgt cgtacgacct tcaagggacg cttgtttggt gggattctct tcccatttat
     3061 gaatgggatg agtttggtca atactgccat tgttatcttt gcaggttcca gcattgttct
     3121 caacgatagt tcgctagaaa cagctgccgc acttggtctg gtggtgactt ttgttcaata
     3181 ttcgcaacag tattaccagc caatcatgca ggttgctgcc agctgggcag aattgcagct
     3241 agctttcaca ggagctcatc gtattcagga aatgtttgat gagcctgagg aagttcgccc
     3301 tcaaaacgct ccgctattta tcgaattaaa agaaggtgtt gaaatcaagg acattgactt
     3361 tggctacctg ccgggtcaga aggtcttgga caaggtgtca atctctgctc ctaagggcaa
     3421 aatggtggca gtcgttggtc cgacgggatc tggtaagact accattatga acttgattaa
     3481 ccgcttctac gatgtcaatg gtggtagtgt ggcttttgac ggtcgtgata ttcgggaata
     3541 tgacttggac agcttgcggg ataaggtcgg cattgtcttg caggagtcgg ttcttttctc
     3601 aggtactatt gcggacaata ttcgctttgg tgatgagagc atttcgcagg aaatggttga
     3661 aaccgcagct cgtgccaccc atatccacga ctttatcatg agcttgccag agggttatga
     3721 aacctttgtg actgatgatg agaatatctt ctcgacaggt cagaaacagc tgatttccat
     3781 tgcccgtacg ctcttgacag atccacaagt cttgattttg gacgaagcaa cctcaaacgt
     3841 tgatacggtg acggaagcca aaattcaaaa ggctatggag gctattatcg ctggacggac
     3901 cagcttcgtc attgcccacc gcctcaaaac catcctcaat gcggacgaaa tcatcgtcct
     3961 caaagacgga aaagtgatcg agcaaggcaa ccacagccaa ctcctcaagc tcaacggctt
     4021 ctatgccgaa ctctaccaca accagtttgt gtttgagtaa agttgaaaac cccagccact
     4081 aggttggagt tttgctttta gcctacgaat aaattataat agagagcgta ttatgcagga
     4141 agaaattgaa gggaaactac tatgaaaatc cgtggttttg aactggtcag ccagtttact
     4201 gatgaaaatt tattgccaaa acgtgagacc gctcatgcag caggttatga cctgaaagct
     4261 gcggagagga tcagcttaga gcctggtgag attaagctgg ttccaacggg tgtcaaggcc
     4321 tatatgcagg caaacgaggt cctctatctc tacgaccgtt cgtccaaccc tcgcaagaag
     4381 gggctggttt tgattaactc agttggagtt atcgacggcg actactatgg caatccagcc
     4441 aatgaaggtc atatctttgc ccagatgcga aacatcacag aggaaactgt cgtggtggaa
     4501 gctggcgagc gaatggtgca ggctgttttt gcacccttcc tcttggctga cggcgaccag
     4561 gccgacggcg ttcggacagg tggatttggc tcgacgggga aatagactac tatgcagatt
     4621 ctctttgtgc ggcattccga acccgactac agtatgtttg accagcatga taatcctcgg
     4681 ctgtatgcag gttttggacg ggatttggct cctttaactg aaaaggggcg gactttagct
     4741 caggaaattg ctagtaatcc tatcttttcc caagctcaag tagtcgtcgc ttcaagcgtc
     4801 acacgggcct tggaaactgc gacctacatt gctcatgccc agcaactacc tcttctggtc
     4861 gagccctttt ttcatgaatg gcgaccagat atgacggggc aaaatgccag tcaagacgag
     4921 gctgtcttag ctcatcgatt atttttggaa aatagcggag cggtgcctga gtcttcacct
     4981 gttcgctatg agactgctgc ggagatgaga gagcgatttt tacaggccct tgaaaaatac
     5041 aaagcctatg accgaatcgt tatcgtctgt cacggtatgc tgatacgcca gtttgttccc
     5101 aaagaaacta tagcctactg cgaaatccta gaatacactc tataggagga aatgaccatc
     5161 gctaagaaaa aaacaacctt tgtctgtcaa tcctgcgagt accactcgcc caagtatctg
     5221 ggccgttgcc ccaactgtgg ctcctggtct agctttgtcg aggaagtgga agtcgctgaa
     5281 gtcaagaacg agcgggtcag tctgacaggt gagaagaccc gtcctatgaa gctcaatgaa
     5341 gtgtcgtcca ttcaagtggc ccgcaccaag accaatatgg aagagtttaa ccgtgtcctt
     5401 ggtggcggcg tggtgccggg cagtctggtc ctgattggag gcgatccagg gattggcaaa
     5461 tcgaccttgc tcctgcaagt atcgacccaa ctttcgacta ttggcaccgt cctctatgtg
     5521 tcgggggaag agtctgccca gcagattaag ttgcgagcgg agcgtttggg cgacattgac
     5581 agcgagttct atctctatgc ggagaccaat atgcagagca ttcggactga gattgagaaa
     5641 atcaagccag atttcctgat tatcgactct atccagacca ttatgagccc tgacatttct
     5701 agcgtgcaag gttctgtcag tcaggtccgt gaagtgacca atgagcttat gcagattgcc
     5761 aagaccaaca atatcgcaac ctttatcgtc ggccacatga ccaaggaagg caccctggct
     5821 ggaccgcgga ccttggagca catggtagac accgttctct attttgaggg cgagcgtcaa
     5881 cacaccttcc gtatcttgag ggcggtcaaa aatcgctttg gctccaccaa cgaaatcggt
     5941 atttttgaaa tgcagtcgca gggcttggtc gaagttctca atccaagtga ggtctttctg
     6001 gaagagcgtc tggacggagc gactggctcg gctattgtcg tgaccatgga gggcacccgc
     6061 cctatccttg ccgaagtgca ggctctggtg accccgacca tgtttggcaa tgccaagcgg
     6121 accacgacag gcttggattt caaccgtgcc agcttgatta tggcggtttt ggaaaaacgg
     6181 gccggtctgc tcctccaaaa ccaagatgcc taccttaagt cagcaggcgg tgtcaaactg
     6241 gatgagccag ctattgacct agcggtcgca gttgcccttg cctccagtta caaggacaag
     6301 ccaaccaacc cacaagagtg ctttataggc gagattggcc tgacagggga aatccgccgc
     6361 gtcaatcgga ttgaacaacg gattaacgaa gccgccaaat tgggctttac caaggtctat
     6421 gccccaaaaa attccctgac aggtatcaag gtgcccaagg aaatcaccgt tatcagcgtg
     6481 accaccattg gcgaagtctt gcagaaagta ttcaacttat gaaatcattc gggagtgaca
     6541 gctagtcgct cctctttttg cgacaaatag tcgggaatgt gataagctag gtctaaccta
     6601 tttctgaaaa tttcagaaat tctcatcaga caaggaggtc ctatgtctta ttttcaaaac
     6661 tttatgaagg ccaacaaggc ctatgttgac ctgcatggtg attaccattt gcctcttcgt
     6721 ccaaagacca aggtggctat cgtgacctgt atggactcac ggcttcacgt ggctcaggcc
     6781 ttgggcttgg ctttggggga tgctcacatt ctgcggaatg caggtgggcg cgtgacggag
     6841 gacatgattc gctcgctggt tatttcccag cagcagctcg gcacacggga aatcgtggtg
     6901 ctccaccata cagactgcgg tgcccagacc tttaccaatg aagaatttgc ggtccaactc
     6961 aagcgagatt tgggagtgga tgtggctggt caggattttc ttccttttac agacattgaa
     7021 gaaagcgtgc gggaggatat tgctctcttg aaacaatctc cgctcatacc tgacgacgtt
     7081 gaaatttctg gtgcggttta tgatgtggat acaggtcgta tgacagaagt tatataggaa
     7141 tgctcaggaa gttcggtttt tcctgtaaat tttatctgaa tgaccgagaa atccttgaca
     7201 agtttttttg aatgagataa aattgtatta tcacaacaga acaagcggag agataaatga
     7261 tgcttggttt attctagctt gttcttggtt tattatggct atcctgtggt taacaggacc
     7321 tttcgtaaaa aataggagtc aactatgtca gacaatcgga tgaaatatac tatcgatagt
     7381 aatatgcagt ttcctttggt ggaaatcgcc ttggaagctg gtgaatcagc ttatattcaa
     7441 caggggagca tggtctacca tacgccgagt gtgaccttga ataccaagct caatgcgcgt
     7501 ggtggttcag gttttggtaa attgatgggg gccatcggtc ggtcaatggt atcaggcgaa
     7561 tctatgttta tcacgcaagc catttccaat agtgacgatg gaaaaattgc ccttgcgcct
     7621 tcaacaccag gtcaggttat tgccttggaa cttggggcag agcaatatcg actaaatgat
     7681 ggtgccttcc tggcccttga tggttctgct caatataaaa tggaacgcca gagtgttggg
     7741 aaagctttct ttggtggtca gggtggactc tttgtgatga cgacagaggg acgcggaaca
     7801 cttttggcga atgcgtttgg ttctattaag aagctaactt tggatggtgg aagtatcacc
     7861 attgacaatg ctcatgtggt tgcttggagt cgtgatttgg actacaatat ccatatggaa
     7921 aatggtttcc tccaatctat cggtacaggt gaaggaatcg ttaatacctt tactggttat
     7981 ggagaaatct atgtacagag tttgaacatt gagacctttg ctcaggtcat tggcaatcat
     8041 attgtcggtg caggtggtga tggtggtggt ggaagcacat cgttgctgga tgcgattttt
     8101 taagaagaaa aactctgcaa ttttcaaaat catataataa aaataaagtc cctcgcgtaa
     8161 tgcaagggac ttttcttagt ttatttctac cacttacctg tctaattttg ccacttactg
     8221 aaatgccctt gtaattggat gtcgaactgg tataatagag ctatcaaaaa ggagggagct
     8281 atgaaagtta ggattgaatt tgatgacagc ttagatcatg ttgaagttgt tatccgaacc
     8341 agccagctgg gaccagagat tgaacagatt cagcaagctt tgcaacaagt tagtcgtccc
     8401 tcgcttgttt tttacaaggg gagcagcgag tattttcttt cattgggtga catacttttc
     8461 tttgaaacgg acggaaccaa gatttttgct catacaggcg atgatgccta cgaggttaaa
     8521 atgaaactct atgaacttgg ggagcatttg cccatctact tttgtcgggt ttctaaatca
     8581 acgattgcca atgctagagc tgtgtattca ttggataagt ctttttcagg aactagtcgg
     8641 atttccttct atcagaccca caaggaagtc cacgtgtcgc ggcattatta tcatttatta
     8701 aaagaaaagt tacgagaagt gaggtaggga gatgaaacgt ctattaattg gagctgcagt
     8761 tataggactg gcggttttgg tcttgttgag ggattcattg ggtttgcatt tggcaatgcc
     8821 cttttggacc actgtctggt ttgtattaac ctttgtgaca ggttttcacc gcttggtaaa
     8881 gttggattgg cttgccagta tcttttgttt cggcctagct tttatagctg ccaactctgt
     8941 ctatgaatgg gtggagtttg ggacttggaa catgtttctg tcgcttgtct tactctgtct
     9001 tggcttgaaa ctaattttta aaccaaggaa gcgcagactg gctcatggag ttgtcacagg
     9061 ggtgattggc gacaagggac gcgatacagc ttttggttcc tcgactcgtt atatccatga
     9121 ggagaatttt attcatgata gtgtggatgt agcctttgga tctagtacag tctattttga
     9181 tcaggcggtg attctgggta ataaggcaga ttttcatatc gatgcggcct tctcaaatat
     9241 cacactctat ctgcctgctg actggcaagc ggttgtagag ttggatagcg ccatgtcaac
     9301 aactaacaac tacgcatctg agccaaaaga aaaggttctc ttggtgacgg gtgatatggc
     9361 attttctaca ttaaatattt actctatgta aaagaataat cgcagaggaa agtctatcca
     9421 ggttcctctg taaaataaaa attcggaata ttctggaaat tattcaaaag aaagggatta
     9481 tcatgaaaaa gattttgaaa aatgctacct acctatgggt actgacggcg gatatgctgt
     9541 ccaattttgg cgatgtggtc tattatctgg ccttgatgaa ctatgttttg ctggtgccca
     9601 acagtcgtct ggctctggcg attgtgacct tctcggaaat cttccctagc tttatggggc
     9661 tctttacagg ctatctggca gacaagacgg tcaacaaaat cagcactatc aagctgaccc
     9721 tactctttcg tgttcttcta tacctcatcc tcggattctg catgggcttt gagccagccc
     9781 tctggattgt cgtggtggct gcaactttca atgtctttgc agacttcgct ggcttctatg
     9841 aaaacggcct ctatacacct ctgggattac gcgtagcgcc caaagaagag cgggagcagt
     9901 actcggcctt tcgccagacc gtgaccagcc tcctcaatat cgcctttcag gccctctctg
     9961 ccctcttggt cggcctcctc tcctaccaaa acctggcctt tctcaatgcc ggcacctttt
    10021 tagccgccct cctcatcatg cagctgctga cgccagtctt tcgcaaactc ctgacggagc
    10081 agcctttgaa aatagcagag cagtcgagcc agactgagca aaaaaccaag agaccaggca
    10141 ttctagcttc cttcaagcaa gccatcgtgg agctgcgcaa gatacccgag ttccgcctgg
    10201 tcctgattac cacccctctt atcaacgcct gtggagcgat tctctatcct attctggtcc
    10261 tgctgattag cgaagaccca ggccttgtct tcctcaatgt tgaaacaacc cttgccctga
    10321 ccattctgat cttctttatc ggacatattc tgggctcgac cttggtcttt acccttttca
    10381 aaaataccag catggtgacg ctggaagtgg cagcaacctt ctctctactt ggcgtttttg
    10441 tcggaatgtt gctacatcaa ctgccaatta ttttcttctt ccttactaca atggggatta
    10501 gttcaggagc tagtggacct aagtttaacg ctaagtttgt caattctatg ccagaggagc
    10561 agttggcgac cattggcgga gcggtatcaa cctattttat gctaggtcaa gcctttactc
    10621 gactgttggt ttcgggtttg gtcttaatct tgactgtcaa tcagattagc ggacttttcc
    10681 tagctgcaac tggtttgtta gtcctctata tcctctactg gctggcacgt aaccaaaaaa
    10741 cacctcaaaa tcagtctgtt tagactgatt tttctgttat ctgggggtgt tctatgctat
    10801 aatgttcttg attgaaattt tacaggagag aaacatgact aaaccaattc gtgtgcgtta
    10861 cgcaccaagt ccaacgggac ttttgcatat cggaaatgct cgtacagcat tgtttaacta
    10921 tctttttgcc cgtcatcacg gcggtacttt ccttattcgt atcgaggaca cagaccgcaa
    10981 gcgccatgtg gaagacggcg agcgttctca gcttgaaaac ctgcgttggt tggggattga
    11041 ctgggatgag agtccagaaa ctcatgagca ataccgtcag tctgagcgtt tggatattta
    11101 ccaaaagtat gttgatcagc tcttggcaga aggcaaggcc tacaagtctt atgtgaccga
    11161 agaagagttg gcggcggagc gtgagcgtca ggaagctgcg ggtgaaactc ctcgctacat
    11221 caacgaatac cttggtatgt ctgaagatga aaaagcggcc tacatcgcag agcgtgaggc
    11281 ggctggcatt gtcccaacgg ttcgcttggc tgtcaacgaa acaggtatct acaagtggaa
    11341 tgacatggtt aagggcgaaa tcgagttcga aggtggcaac atcggtggtg actgggttat
    11401 ccagaaacgt gacggctatc caacttacaa ctttgccgtg gtggtggacg attatctcat
    11461 gaaaatctcg cacgttatcc gtggggacga ccacattgcc aatacaccca agcagctcat
    11521 ggtctacgaa gcacttggtt gggaagcacc agaatttggt cacatgacgc ttattatcaa
    11581 ttctgaaact ggtaaaaaac tgtctaaacg tgatactaac acccttcagt tcatagaaga
    11641 ttaccgtcgt aaaggttaca tgcctgaagc tgttttcaac tttatcggtc ttttgggttg
    11701 gaacccgggt ggcgaggaag aaatcttctc ccgtgagcaa tttatccaac tctttgacga
    11761 gaaccgcctc agcaaatcgc cagctgcctt tgaccagaag aaaatggact ggatgagcaa
    11821 tgagtacatc aaaaatgctg atttagaaac tattttcaac cttgctaagc cattcttgga
    11881 agaagcgggg cgtttgacag acaaagcaga aaaattggtg gaactttaca agccacaact
    11941 gtcatctgcg gatgaaatcg ttggtttgac agacctcttc ttctcagatt tcccagaatt
    12001 gactgcggaa gaaaaagaag tgatggcagg cgaaacagta ccgactgttc tcaatgccct
    12061 caaggaaaaa ttggaagcca tgacggacga agatttccaa ccagataaca tcttcccgca
    12121 aatcaaggct gtccaaaaag aaacaggcat caagggcaaa aacctcttca tgccaatccg
    12181 tatcgccgtt tcaggcgaaa tgcacggacc agagttgcca aacaccattt acctgctcgg
    12241 ccgtgagaaa tccatccagc atattgacaa tatgttgaag agtttgtaat gaaataatct
    12301 ccgctgtcct gtgatagtgg ggatttgtct gttaaggggg gggttagctt tttaaaaaca
    12361 acctctccac atagtctttc tgccttggaa tgactagctc tgtttccagg aaatttttca
    12421 aattttcttg tgggacccag atataattgc tggtttcgtt ggattggagt tggattgtgg
    12481 atttgtccca gtcggtttca gcccagtagc agtggaaaat gcactggtcg tcatgggcga
    12541 caaagtgtgt atggtggcgg agttggtcag ctgtcagctc aatgcctgtc tcttcgcgga
    12601 cttcgcgcaa aatggcctgc tctgctattt ccccaaacaa agctgaacct cctgctgttg
    12661 cttcataata gtcagggtag gagggcttgg tgctgtcgcg tttcatgaag agggtactgc
    12721 cgtcgtggtg gcggatgatg cactcgacga ccaggtggta gaggccgtcg ggaatggatt
    12781 ctccgcgtgt gagggtgtgg tcggtcaagt gaccgtcggc tgtgtaggtg ttccagattt
    12841 ccatttcatt ctcctgtcaa ttttgtagtt attcagtata gcacatctgt aagtgcaaag
    12901 caacatgttt tgtttttgta cggacaagtg ttatactggg gctactaact caaaggagaa
    12961 atcaatgcaa actataatcc cacatctctg gtatgataca gaggcaaaag aagcggtggc
    13021 tttctatgta gaactcttcg gtggcaagat tgactggacc tacaccatta cggatacgcc
    13081 ttcgggtgat tcggatttga ttcagtttca actgggcgat atgaccttgg cggctattag
    13141 tgcgggtcca tactttaagc tcaatgagtc catgtccctc atggtcaatg tagctagcaa
    13201 ggatgaagtg acacgtttgt accaagtctt gtcagaaggc ggtcgtgtgc tcatgccttt
    13261 gggagaatat cctttcagcc cttactatgt ctggttggaa gaccgctttg gtctgtcttg
    13321 gcaactgtct tatgcaccgg acttggacaa gccttatcag tttgacatct gcctgctctt
    13381 ctcgcaggaa caggttggtt tggcccagcc tatgttggat tactacaagg ataagctgca
    13441 tcaagctcgt cttggtcgct tgtcttacta tggcgaaggt gaggctgcgg tggcggctgc
    13501 caagttgaat tatgcggagc tttttatcgg agaccaaaaa attatcgcta tggaccacgg
    13561 ctacggtggt gtggcttctt tcaacgaagc cttctcattc atggtctatg tagacagtca
    13621 ggaagaagcg gagagctggt atgaaaaagt gtctgctgtg ccagaagcgg agatttgcgg
    13681 ttgggccaag gaccagtttg ggatttcttg gcagatcgtg ccgcgtattt tgatggaggc
    13741 atacgatacg gctaatccag aaaaggtcaa ggcagtcaat gcagcggtga tgaccatgaa
    13801 gcgtttggac attgcggcta ttcaagcatt gctaaactag cagatgataa cggagactgt
    13861 tctgcagttt ccgttttttg gttgaggaaa ggttgattta taggaatttt gatataatgg
    13921 aaaaaagtgt acgaaaggaa tgtgtatgaa agcaacagaa cgacgtaaga aaatcctatc
    13981 ccttttacga gaaagcccct atccccttgc agctaattat ctggcgaaag aatttggagt
    14041 gagtcggcaa gtaattgttg gagatgtagc cttgcttcgt gcggagggag aagctgtctt
    14101 ggcaactcca agagggtact tactccaatc ttctttgcca tctactgaag gagcttacat
    14161 tcgaaagata gcttgtcaac atggtccaga agaggtagaa aaagaattga caatcttgct
    14221 agagggtgga gctcaaatac tagatgttga aattgagcat cccatttacg gcttattatc
    14281 aggcaagctg aatattgcaa gtttagaaga tagggatcat tttttggatg ccttgggtca
    14341 ataccaaggt gtgttactga gtaatttaac agaaggagtt catacacata cagtctcttt
    14401 cccatctgtg caagcctata atgaactttc agcagcttta aaacatgcag gtattttact
    14461 ataaaatcaa taaacattac aggtgtcttg acacatgtaa tgtttttgtt ttataatcaa
    14521 accaatagaa agagaggtgc ctaatgtctc aattaacact atcatctaaa aattcagtta
    14581 agcagctatc aattagtgca attttaaccg catttgccat tttaatacct ttaatgatgc
    14641 cgattaaaat cattattggc ccagcatcct atacacttgc tagtcacatt cctttgttta
    14701 tagccatgtt tatttcacca gctactgcta tttttgttgc tttaggttct agtttaggct
    14761 tttttctcgc cggttttcca atcgttattg tatttcgggc gcttacgcat ctgttcttcc
    14821 ttaccttagg tgcggtcttg gtcaagcgtt ttccgactct catggattct aagcgctttt
    14881 tactattagg aattgggctt aatctcctgc atggtctagg agaatatatt gtggtgatgg
    14941 tgcttacttc ggggcaacaa acttctgcta cctactggat aacgatgctt ggcttggtgg
    15001 gtgttggctc ggctattcat ggattgcttg attttagttt agcttattat ttctggaaaa
    15061 ttttaaaaga acggaaaatt tatcaaccat aatcagttat gatgaggaat atattttaga
    15121 agctggagaa tattctctag ctttttttgg aaat
//
LOCUS       DASGCC010000048        15124 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.048, whole genome shotgun sequence.
ACCESSION   DASGCC010000048 DASGCC010000000
VERSION     DASGCC010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15124
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.048"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(43..969)
                     /locus_tag="U1404_001000"
     CDS             complement(43..969)
                     /locus_tag="U1404_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5347966.1"
                     /translation="MNLSKEKLLFHHYYANWLRIYKEGAIREVTLKKYRMTLQWLIRL
                     APSLLLEDLNRVRYQELINSYAKTHERQTTMDFHHQLKGAILDAVDEGIIERDPTRKV
                     IIKGRLPRKKKTKYLNQFELHQLIQELRLGEELNWDWLILLIAKTGIRFSEALALTTQ
                     DFDFHRQLLTIDKTWNYKGDGGFLPTKNKSSIRKIQLDWQTSTQFANLLQHTQPDDLL
                     FVKKERIYNSTINAILEKRCLSANLPVITIHALRHTHASILLFAGVSIASVARRLGHA
                     SITTTQKTYLHIIRELENQDIDLIMRSLSGLC"
     gene            1063..1665
                     /locus_tag="U1404_001001"
     CDS             1063..1665
                     /locus_tag="U1404_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5347967.1"
                     /translation="MKNFKERKIMKLEELALFTGGSLQVRLDTTSWEDARDYILYNQQ
                     HHQLDGYEVIEEVIDSRTVTTDREVTLLEEGDLLFSLLSGKAVLVRAEHAGLLYTQNY
                     IKIEPIAKLDKVFLLYLINESSAIRRQFYQSLQGSEVMKYTVKQLKSLQLGALPPLDS
                     QQKLGKIYLDGLALRQKRQAYAQGDFLRLTYLLKEVYAHE"
     gene            1658..4864
                     /locus_tag="U1404_001002"
     CDS             1658..4864
                     /locus_tag="U1404_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM5347968.1"
                     /translation="MNELAFETELIQYITTGTITQPEHLEGLEWSVSDSSTLYAVKSK
                     LWTYEPGIKTTEQLWENFRNILWQHNQHRLDKPLSDTEFAQVKQIISDLKTPYEAGQF
                     LYGISGVSELEITLDDGRHTFLTVFDQRKIGGGDTVYQVVNQIRRTPKIPGRRECIFD
                     TTLLINGLPIIQIEEKKDTVDVDKALNQMHQYIQERQYTDIFSTLQILVAIAPNNVRY
                     MANTTAEKFNKDFAFHWQRKSDGSKVRNWKEFADSMLSIPMAHQMATNYMILDGTPQK
                     QMLKVMRPYQVYATQAVIEGIKKVDFELGCNKVGYIWHTTGSGKTITSFKTAWLASRM
                     PKVDKVVFLVDRIALTNQTKDDYLAYDPEAGENSFGSIRETQNTTALARQLTSKDSGI
                     IVTSVQKLDTLVKRKSFKSPDKHIVFIVDEAHRSTGGDSFAGIQKAFKKAAWIGYTGT
                     PNLDDTGASLRTQDIFGPLLHAYTIKNAISDRNVLGFKVDFETTIDQEKLKITYLPDF
                     YRQKYPKWTSAQIEEKIANLSPDDMDDAVTSSVYDENPEHVRLVVEDVFKHWANRSGS
                     GRYNALFTTHVGGGRASTPMAMMYFREFQRINQLHREQGGLVLKVGVTFALNTQNNDS
                     MVESNTGLLEAIAIYNTEFGTSFGLSDVAAYTEDLVSRLNRTAKDKNYLDLVIVVDQL
                     LTGFNAPELNTLYVDRTLKGASLIQAYSRTNRVEDMDKKPFGRVINYRWPAHNEKLMN
                     QALAIYADDSATDLSDAEQKNNNEKNGLVAKPFKEVFAEVKQTVDQLRELTGDFNDIP
                     KSEKKREAMLELLRAYNQGLSKLKQYQPEEVDGVIEGFDYNQPDRFIESLGISVEEEK
                     LLTTVLANELKRTLAKEQKVSIHQIELKMTHIKEVTIDYDKLTELVELLLNQVHEEKM
                     VEAAATRDELDRFASGLEDLNYADQIRQTGDAIYRGDFPTQDMNFAYPVKGLDSQKII
                     QEASRVYIDKKLLAFRIQWGLTEHIRNQELRELLARHRYGQNDLDDTGHLRTLIKEAS
                     RDYQTWAEGDAVKGLSKIQYRNQLRQALYDLADDLVGQ"
     gene            4972..6222
                     /locus_tag="U1404_001003"
     CDS             4972..6222
                     /locus_tag="U1404_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5347969.1"
                     /translation="MTKEKSTVPRLRFPGFTDAWKQRKAMEIFKFVSDKGYADLPILS
                     ASQELGMIRRDEIGIDIKYDKEAVANYKRVLPGQFVIHLRSFQGGFAWSEIEGLTSPA
                     YTILDFKEENSSKFWRNVLTSPNFIKKLETVTYGIRDGRSISYSDFSTLNFVIPTLPE
                     QEAIGSFFSDLDQLITLHQRKLDDVKELKKALLQKMFPKGNGNDFPELRFPEFTDAWK
                     QRKLGEVADFSIKTNSLSRDKLSSYFYEVQNIHYGDILTKYDAILDVCNKELPSIIGS
                     TISDFADALLSEGDIVFADAAEDSTVGKAIEVRNFKGKNVVSGLHTIVARPKVSYAPY
                     YLGYLINSTAYHNQILPLMQGTKVSSISKANLKSTTVVFPTLPEQEAIGSFFSDLDQL
                     ITLHQRQLDHLKLLKKALLQQMFI"
     gene            6235..6903
                     /locus_tag="U1404_001004"
     CDS             6235..6903
                     /locus_tag="U1404_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM5347970.1"
                     /translation="MTYSQDYLDDLLVRMAYHSSGIEGNTISLPETVSIILESTLPGK
                     HKSIREFYEIENHKQAFQALLIALDNGEELSLGLVKDIHALLMDRLQHDRGQFKSVQN
                     AIIGATFKTASPEETPFLMQQWVDNANYRLGLPLEIAELLEVLADVHIQFERIHPFSD
                     GNGRTGRLILMFQSMLKLGAPVLISKEDRALYMELLAEQDVTGLSQLLKRSLEFEQER
                     KKQF"
     gene            6987..7502
                     /locus_tag="U1404_001005"
                     /pseudo
     CDS             6987..7502
                     /locus_tag="U1404_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942557.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
     gene            7547..9136
                     /locus_tag="U1404_001006"
     CDS             7547..9136
                     /locus_tag="U1404_001006"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEM5347971.1"
                     /translation="MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEH
                     QERFLVEDEIISPAPGETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVA
                     KIDNSEIVASDYQTIFDHFNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSL
                     NSIVKLIDSIEYKNDEGKDILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT
                     LGLEKSDTSFSVYDPTMGSGSLLLTVRNELPQGQHIKFYGQEMNTTTYNLARMNLMMH
                     QVSYSNMILNNADTLESDWPDGVDELGIDQLRSFDAVVANPPYSAKWDNRESKLKDPR
                     FMEYGKLAPASKADFAFILHSLYHLNNTGTMAIVLPHGVLFRGAAEGHIRKLIIEKNY
                     LDAVIGLPANLFYGTGIPTTILVFKKNRQTKDVFFIDASKEFEKGKNQNHLSDDMVEK
                     IVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQLEQDR
                     LEIRALEDKIRQQLKTLGVDF"
     gene            complement(9187..10461)
                     /gene="serS"
                     /locus_tag="U1404_001007"
     CDS             complement(9187..10461)
                     /gene="serS"
                     /locus_tag="U1404_001007"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000884256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEM5347972.1"
                     /translation="MLDIKRIRTDFDGVAAKLATRGVAAETLANIKELDAKRREILVT
                     VEELKAERNTVSAEIAQAKRNKENADDKIAAMQKLSADVKNLDAQLLEIDEELNAIIT
                     VLPNTPHDSVPVGADEEENVEVRRWGTPREFTFEPKAHWDLGEDLDILDWERGAKVTG
                     ARFLFYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTF
                     ELADTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIR
                     LHQFHKVEMVKFATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTY
                     DLEVWIPAQNAYREISSCSNTEDFQARRAQIRYRDAADGKVKLLHTLNGSGLAVGRTV
                     AAILENYQNEDGSVTIPEVLRPYMGGVEVIKP"
     gene            complement(10679..11050)
                     /locus_tag="U1404_001008"
     CDS             complement(10679..11050)
                     /locus_tag="U1404_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003092275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HEM5347973.1"
                     /translation="MAQSQNTSVELQTTGVSYMGFGGKVGKFLIGDKALEFYPDSNVE
                     RYIQIPWSEMTSIGANVSGKAISRHFEIYTEKSRFLFASKDSGKILKIAREHIGNEKV
                     VKLPTLMQTIGRKISNLFAKK"
     gene            complement(11110..12021)
                     /locus_tag="U1404_001009"
     CDS             complement(11110..12021)
                     /locus_tag="U1404_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5347974.1"
                     /translation="MSEKIQLSVSDRKKVWWRSTFLQGSWNYERMQNLGWAYAMIPAI
                     KKLYTKKEDQAAALERHLEFFNTHPYVASPILGVTLALEEERANGAEIDDTAIQGVKI
                     GMMGPLAGIGDPVFWFTVRPILGALGASLALSGNIMGPIIFFLGWNIIRMAFLWYTQE
                     FGYKAGSEITKDMSGGILQDITKGASILGMFILAVLVQRWVSITFAVDLPAKQLSEGA
                     YIVFPEGTVTGAELKGILGQALSGLSLEPTQAQTLQGQLDSLIPGLMGLLLTFLCMHL
                     LKKKVTPITMIIGLFIVGILARFFGIM"
     gene            complement(12039..12848)
                     /locus_tag="U1404_001010"
     CDS             complement(12039..12848)
                     /locus_tag="U1404_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM5347975.1"
                     /translation="MSDITLISAILVVIVAFFAGLEGILDEFQFHQPLVACTLIGLVT
                     GNLAAGVMLGGSLQMIALGWANIGAAVAPDAALASVAAAIIMIKGGDFSTEGIAVATT
                     TAIPLAVAGLFLTMIVRTISVGLVHGADNAAKDANFAAVERYHLFALLLQGLRIAVPA
                     ALLLAIPAEAVQAVLESMPAWLSGGMAVGGGMVVAVGYAMVINMMATREVWPFFALGF
                     AFAAISKLTLIALGVIGVAIALIYLNLSKQGGSGNGGASSNDPIGDILEDY"
     gene            complement(12880..13872)
                     /gene="manX"
                     /locus_tag="U1404_001011"
     CDS             complement(12880..13872)
                     /gene="manX"
                     /locus_tag="U1404_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002308759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM5347976.1"
                     /translation="MSIGIIIASHGEFAAGIHQSGSMIFGEQEKVQVVTFMPSEGPDD
                     LYAKLNAAVDAFDADDEVLVLADLWSGSPFNQASRVAGENPDRKFAIITGLNLPMLIQ
                     AYTERMINAAAGVEEVAANIIKEAKDGIKVLPEELQPAEATPVADAAPVALQGAIPPG
                     TVIGDGKLKINLARIDTRLLHGQVATGWTPASKADRIIVVSDTVAKDELRKQLIKQAA
                     PGNVKANVVPIKKLIEVSKDPRFGNTHALILFETPQEALEAIEGGVEIKELNVGSMAH
                     STGKTMVNNVLSMDKDDVATFEKLRDLGVEFDVRKVPNDSKKDLFELINKANVQ"
     gene            complement(14094..14906)
                     /locus_tag="U1404_001012"
     CDS             complement(14094..14906)
                     /locus_tag="U1404_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5347977.1"
                     /translation="MKKKIIAIDLDGTLLNNDSQLSDYTISTIKKVRQAGHTVLIATG
                     RPYRMAEKFYQQLELDTPMINFNGSLVHIPGKKWQWEQNILIDKKYLLEFLKEEETFE
                     ADFIAGEYKNKFYITQKNLDKIDPALMGVEQITPDTLIKPELITSDPHSILMQTRATD
                     KYELAKEMNAYFKDELEINTWGGPLNILETCAKGVNKATALSYVLNLYQATPSDLIAF
                     GDEHNDVEMLDLAGTAYAMKNCSDTLRPHADRLTAFANFEDGVARELENLFL"
BASE COUNT         4537 a         2910 c         3368 g         4309 t
ORIGIN      
        1 tccatacgga ttcgtctttt gctataagta gaaacatgga atttaacaaa gtccggagag
       61 tgaccgcata attaaatcaa tatcttggtt ttccaactca cgaatgatat gaagataggt
      121 tttttgggtc gttgttatgc ttgcatgacc aagtcgtcta gcaacgcttg cgatagagac
      181 cccggcaaat aataaaatag atgcatgggt gtgtcgcagg gcatgaatgg tgatgacagg
      241 aaggtttgca cttaggcaac gcttttcaag aatggcattg atggtagagt tgtatatccg
      301 ctctttcttc acgaaaagta ggtcatcagg ttgggtgtgc tgtaataagt tggcgaattg
      361 ggtgctggtt tgccagtcga gttggatttt tcgaattgaa gatttatttt ttgtaggtaa
      421 aaatccgccg tctcctttat aattccatgt tttatcaatg gtcaacagct gtcggtgaaa
      481 atcaaaatct tgagtagtga gagcaagggc ttcggagaat cgaatacctg ttttagcaat
      541 caataagatg agccaatccc aattcagctc ctctccgaga cgtaattctt gtatcaactg
      601 atgaagttca aattggttga ggtattttgt ctttttcttt cgaggaagtc ttcctttgat
      661 aatcacctta cgtgtcggat ctcgttcaat aattccttca tctacagcat ctaaaatagc
      721 tcctttcaac tggtgatgaa aatccattgt tgtctgtcgt tcatgtgttt tagcatagct
      781 gttaatcaat tcttggtaac gaacccgatt caaatcttcc aacaacagac taggagctag
      841 cctgataagc cactgcaaag tcattctata tttcttgaga gtgacttctc gaatggctcc
      901 ttccttgtaa atccgaagcc aatttgcata atagtgatgg aaaagcagtt tttcttttga
      961 taagttcatg acagaacctc ctttttaatt tttaaaaatt acataattta ttgacagatt
     1021 tccgaggaga tgatatactt attttagcga aaaaatgtaa ttatgaaaaa tttcaaagaa
     1081 aggaaaatta tgaaactaga agaattggct ctctttacgg gaggtagttt acaggttcgc
     1141 ttggatacta ccagctggga agatgctaga gactatatcc tctacaatca gcaacatcat
     1201 caattggatg gttatgaggt gatagaagaa gtgatagata gtcggaccgt gacgacagat
     1261 agagaagtga ccttgctcga ggagggcgac ttactcttta gtttactatc ggggaaggct
     1321 gttttagtga gagcggagca cgcaggctta ctctatacac agaactatat caaaattgag
     1381 cccattgcaa agctggataa agtcttcttg ctgtatctga tcaatgaatc ctcggctatt
     1441 agacggcagt tttaccaaag cttacagggg agtgaggtaa tgaaatatac agtcaagcaa
     1501 ctgaaaagtt tacagctagg cgccttgcct cctttagata gtcagcagaa actaggaaag
     1561 atttatttag atggattagc cttacggcag aagcgacaag cttatgcgca aggagatttt
     1621 ttacgactaa catatttgtt aaaggaggtt tatgcacatg aatgaattag catttgaaac
     1681 agaattgatt caatatatta cgacagggac tattacacag ccggagcacc tagaaggttt
     1741 agaatggtct gttagtgatt cttcgacctt gtatgcagtc aaatctaaac tgtggactta
     1801 tgagccgggt atcaagacaa cggagcaatt atgggaaaat tttcgtaata ttctctggca
     1861 acacaaccaa catcgattgg acaaaccctt gagcgatacc gagtttgctc aagtcaagca
     1921 gattatttca gatctgaaga caccttatga ggctggccag tttttatatg gaattagcgg
     1981 tgtttccgaa ttggaaatta cgcttgatga tggacggcat acatttttga cagtattcga
     2041 ccaacgtaag ataggcggtg gggacactgt ctaccaagtg gtgaaccaaa ttcgtaggac
     2101 tcctaaaatc cctggacgac gagaatgtat attcgataca accttgttga ttaatggctt
     2161 acctattatt cagattgaag agaaaaagga tacggtagat gtggacaagg cattgaacca
     2221 aatgcaccaa tatatccagg aacggcaata tacggatatt ttttctacct tgcagattct
     2281 agtcgctatc gcccccaaca atgttcgcta tatggccaat accactgcgg aaaaatttaa
     2341 taaggacttt gctttccact ggcagcgtaa atctgacggt agtaaggttc ggaattggaa
     2401 agaatttgcg gattccatgc tcagcattcc tatggcccat cagatggcga ccaactacat
     2461 gatcttagac gggacaccgc agaaacaaat gctgaaagtc atgcgtccct atcaagttta
     2521 cgccactcag gcggtcattg aggggataaa aaaagtcgat tttgaactag gctgtaacaa
     2581 ggttggctac atctggcata caacaggctc agggaaaacg atcactagtt ttaaaacagc
     2641 ttggctggca agtcgaatgc ccaaggtaga caaggttgtc tttctagtgg atcgtatcgc
     2701 tttgaccaat cagactaagg atgattatct ggcttatgat ccagaagctg gggaaaatag
     2761 ttttggtagt attcgagaaa ctcaaaatac cacagccttg gcacggcagt tgactagtaa
     2821 ggatagtggg attatcgtta cttctgtgca aaaattggat acactggtga agagaaaatc
     2881 cttcaaatca ccagataagc atatcgtgtt tatcgttgac gaagctcatc gctcaactgg
     2941 tggagatagt tttgcaggga ttcaaaaggc ctttaagaaa gcagcttgga ttggctatac
     3001 aggaactccc aacttagatg atacaggtgc tagtctgcgg acgcaagata tttttggccc
     3061 tcttcttcat gcctacacta ttaaaaatgc cattagtgac cgcaatgtac tagggtttaa
     3121 ggtggatttt gagacaacca tcgatcagga aaaactaaaa ataacttact tgccagattt
     3181 ttatcggcaa aaatacccga agtggacaag tgcacagatt gaagaaaaaa ttgccaatct
     3241 aagtccggat gatatggatg atgcggtgac ttctagcgtc tatgatgaaa atccagagca
     3301 tgttcgattg gtagtcgaag atgtcttcaa acactgggca aatcgttctg gcagtggccg
     3361 ttacaatgcc ttgttcacca cccacgtagg tggaggcagg gcctccacac ccatggctat
     3421 gatgtatttc cgagagtttc aacgaatcaa tcaactgcat cgagagcaag gaggtctggt
     3481 cttgaaggtg ggagtgacct ttgccttgaa tactcaaaat aatgatagca tggtcgagtc
     3541 aaatactggt ttgcttgaag ctattgcgat ctataacaca gaatttggga cgtcctttgg
     3601 cttgtcagat gttgctgcgt atacagagga cttggttagt cgcctcaata gaacagccaa
     3661 ggacaagaac tacttagatt tggtgattgt cgtggatcag ttgttgacag gtttcaatgc
     3721 tcctgagctc aatactcttt atgttgaccg aaccttaaaa ggagccagtc ttatccaggc
     3781 ctattctcgt accaatcgtg tggaggatat ggataaaaaa ccttttggac gggtgatcaa
     3841 ttaccgctgg ccagctcata atgagaaatt gatgaatcag gccttggcca tctatgcaga
     3901 tgatagtgct accgatttat cagatgcgga acaaaaaaat aacaatgaaa aaaatggact
     3961 ggtggctaag cctttcaagg aagtatttgc tgaagtcaaa caaacggtcg accaattgag
     4021 agagttgacg ggtgatttca atgatattcc gaagtctgag aaaaagcgtg aggctatgtt
     4081 agaattgctc cgtgcttaca atcaaggact gtctaagctc aaacagtatc agccagagga
     4141 ggttgatggg gtgattgaag gatttgatta caatcagccg gaccgcttta ttgaaagttt
     4201 gggaatatct gtagaggaag aaaaactttt gacgacagtc ttagccaacg aattgaaacg
     4261 aaccttggcg aaagagcaaa aagttagcat tcaccaaatt gaacttaaga tgactcacat
     4321 caaggaagtg acaattgact acgataaatt gaccgaactg gttgagctct tgctgaatca
     4381 ggttcacgaa gagaagatgg tagaagccgc agctaccagg gatgaattgg atagatttgc
     4441 aagcggtttg gaagatctca actatgctga ccaaatccgt caaacagggg atgcaatcta
     4501 tcgaggtgat tttccgacac aagatatgaa ctttgcttat ccagtcaagg ggcttgatag
     4561 tcagaagatt atccaagaag cttcgcgtgt ttatattgac aagaagctcc ttgcttttcg
     4621 aatccaatgg ggcttgacgg agcatatccg caaccaagaa ctacgagagt tgttggcgag
     4681 acatcgatat ggtcagaatg acttggatga taccggacac ttacgtacct tgataaaaga
     4741 agctagtcgc gattaccaga cctgggcaga aggtgatgct gttaaaggct tgagcaagat
     4801 tcagtaccgc aatcagttga gacaagcact atatgatttg gctgacgact tggttggtca
     4861 ataggttgcg attttgttgg atgatagcgt ataatagaat ggaaatcgtc cgaaaaattg
     4921 caaaaataac tttcagaaat agaacaaaaa gagagtagaa aaggagggac tatgacaaaa
     4981 gaaaaatcaa ccgtaccacg attgcgcttc cccggattca cggacgcttg gaaacagcgt
     5041 aaggcaatgg agatttttaa gtttgtgtct gacaaagggt atgcagattt accaattttg
     5101 tcagcttctc aagaacttgg gatgattaga cgagatgaaa taggaattga catcaaatat
     5161 gacaaggaag cggtagcgaa ttataagcgt gttttaccgg gtcaatttgt aattcatctt
     5221 cgatcatttc aaggaggatt tgcatggtct gagatagagg gactgacatc acctgcctat
     5281 acaatattgg attttaagga agaaaactcg tcaaaatttt ggcgaaatgt gttaactagt
     5341 ccgaatttca taaaaaaact tgaaacagtt acatatggaa taagggatgg acggagcata
     5401 agttattctg atttttcgac attaaatttt gtcatcccca cgctccccga acaagaagcc
     5461 atcggcagct tcttttccga cctagatcag cttattactc ttcatcagcg aaaattagat
     5521 gatgttaaag aattgaagaa ggctttgtta cagaaaatgt ttccgaaagg gaatggaaac
     5581 gattttcctg agctaagatt cccagaattt acggacgctt ggaaacagcg taagttgggg
     5641 gaggtggcgg acttttccat aaaaacaaac tcactttcta gagataagtt atcatcgtat
     5701 ttttatgaag ttcagaacat tcattatggg gatattttaa caaaatatga tgctatttta
     5761 gatgtatgta acaaagaact tccatcaatt attggaagta cgatttcaga ctttgcagat
     5821 gctttactta gtgaaggaga tattgttttc gcggatgcag cagaagactc gactgttggg
     5881 aaagctattg aagttcgaaa ttttaagggt aagaatgttg tttctggttt acatacgata
     5941 gttgctaggc cgaaagtttc ttatgccccc tactatttag gttatctaat taattcaact
     6001 gcataccata atcaaatttt acctttaatg caggggacaa aagtgagctc aattagtaag
     6061 gctaatttaa aatccacgac agtagtgttc cccaccctcc ctgaacaaga agccatcggc
     6121 agcttcttct ccgacctaga tcagcttatt actcttcatc agcgtcagtt ggatcatctg
     6181 aaactgttga aaaaagcatt gttgcagcag atgtttatat agaaagaggt cagtatgaca
     6241 tattcgcagg attatttaga tgaccttctg gtacgaatgg cctatcattc cagcgggatt
     6301 gaggggaata ccatttctct gcctgagacg gtttcgatta ttttggaaag tacgctacct
     6361 ggcaagcaca agagtatccg tgaattttac gagattgaaa atcacaaaca agccttccaa
     6421 gctctgctaa ttgccttaga taatggggaa gagctgagtt tgggactggt taaggatatt
     6481 catgccttgt tgatggaccg cctccagcat gatcgggggc agtttaagtc ggtacaaaac
     6541 gctattattg gtgcgacctt caagactgca tcgccagagg aaacgccttt tctcatgcaa
     6601 cagtgggtgg ataatgccaa ctatcgcttg ggtttgcctt tggaaatagc tgagctgtta
     6661 gaggtgctgg cagatgtgca tattcagttc gagcgtattc acccatttag tgatgggaac
     6721 ggccggacag gacggctgat tctgatgttt caaagtatgt taaagctggg agcgcccgta
     6781 ctgattagta aagaagatcg agctctttat atggagttgt tagcggaaca agatgtgact
     6841 ggattatccc aattactcaa acgctccttg gagtttgaac aagaacgaaa aaaacagttt
     6901 taagtcgagt tttcagaaag cgactttcaa tcggaactat tatttttgcc tgaaaataca
     6961 atgaaaacct tactttcaca actacttgga aacagcgtaa gttgggggag gttgcggaaa
     7021 aaattagtca aaaaaatcta gatagacagt atgtagaaac ttttacaaat tctgctgaat
     7081 tcggtatcat ttctcagagg gatttctttg aaaaaaatat ctctagtctg gataatataa
     7141 gtggatacta tattgtgaat cctgatgatt ttgtatataa tccaaggatt tcaaatttag
     7201 ctccagttgg tccaataaag cggaataaat tgggaagagt gggggttatg tcgcctcttt
     7261 atactatatt tagattttca gatatacatt tggattttgt agagaagtat tttgacacaa
     7321 caatttggca tagatatatg gagctgaatg gggatagtgg agctcgctca gatagatttg
     7381 ccattaaaga ttcagttttc aaaggtctac ctattcctct ccccaccctc cctgaacaag
     7441 aagccatcgg tagcttcttt tccgacctag atcagcttat tactcttcat cagcgaaaat
     7501 gagatttcga gtaaaaaatg aaacaacatg aaaggattac aaaaacatgt caaaaactat
     7561 tcaggccatt actaatcaga tttggtccat ggccaatgaa ttgcgaggaa atatggatgc
     7621 ttcggaatat aagaactata tcctagcctt catgttctat cgctatctat ctgagcatca
     7681 agagcgtttc ttggtggaag atgaaattat cagtcctgct ccaggagaaa ctgttcagga
     7741 tgcctatgcg cgagaagcag ttgggaatga cttggtagag catttggaaa atacagcttc
     7801 tcaccttggg tatgccatcg agcctgaaga tacctgggca agactggtag ccaaaattga
     7861 taacagtgag attgtagcga gtgactacca gacgattttc gatcatttta acgccaatgt
     7921 agaactcaat cgggatgcta tggaagattt cagaggcgtc tttaatgaca tcaatctagg
     7981 ggactctcgt ttgggcaatt caacggttgc gcgtgcaaaa tccttgaaca gtattgtgaa
     8041 gttgattgat agcattgagt ataaaaatga cgaaggaaag gatattctgg gagaaatcta
     8101 tgagtatctt attggacagt ttgccgcttc ggcaggtaaa aaaggtggag aattttatac
     8161 cccgcatcaa gtgagtaaga ttttagccaa gattgttact ttaggtttgg aaaaatcaga
     8221 tactagcttc tctgtttacg atccaaccat gggttcaggg tctttgctac taacagtgcg
     8281 taatgaacta cctcagggcc agcatatcaa attctatggc caagaaatga acacaactac
     8341 ttataacttg gcgcggatga acctgatgat gcatcaggtc agctacagca atatgatttt
     8401 gaataatgct gataccttag aaagtgactg gccggacggg gtcgatgaac ttggaatcga
     8461 tcagctacgt agttttgatg cggtcgtcgc aaacccaccc tactctgcta aatgggacaa
     8521 tcgtgagtcc aaattgaagg atccacggtt tatggaatac ggtaagctag caccagcctc
     8581 taaagcggac tttgctttta tcttacacag tctttatcat ctgaataata cagggaccat
     8641 ggccattgtt ttaccacacg gagtgctctt taggggagca gcagaaggtc atattcgcaa
     8701 actgattatt gagaaaaatt acctggatgc agttattggc ttgccagcta acctgtttta
     8761 tggcacaggc attccaacca ctattctggt cttcaaaaaa aatcgtcaga ccaaggatgt
     8821 cttctttatc gatgcgagca aggagtttga aaaagggaag aaccagaatc acctttccga
     8881 tgatatggta gaaaaaatag tagagaccta tcacaatcgc cagtctgttg acaaatatgc
     8941 tcatttggca tcaatagaag aaattgtaga aaacgactac aatctaaata ttcctcgtta
     9001 cgtcgatact tttgaggaag aggaagagat tgatctcggg caagtaacgc agcaactaga
     9061 acaagataga ctagagattc gggctctaga agataagatt cgtcaacaat taaagacttt
     9121 gggagtagat ttttagataa atgaaaagag cgagtaggat ttttcctcgc tctttctttg
     9181 tatgtcttaa ggtttaatca cttctacccc acccatgtat ggacggagaa cttctggaat
     9241 ggtgacagaa ccgtcttcat tttgatagtt ttcaaggatt gccgcaacgg tacgaccaac
     9301 tgctagacca gaaccgttga gggtgtggag caatttgacc ttgccgtcag cagcatcgcg
     9361 gtagcggatt tgggcacgac gagcttggaa atcctcggta tttgaacagc ttgagatttc
     9421 acggtaggca ttttgggcag gaatccagac ttccaagtcg taggtcttag cagctgagaa
     9481 gcccatatca cctgtacaga gggccaaaac acggtaaggc aagcctagtt tttgaaggat
     9541 attttctgcg tttgcggtca ttttttccaa ttcatcataa gactgttctg gtgtggcaaa
     9601 tttgaccatt tcaaccttgt ggaattggtg aaggcggata agaccacggg tgtcacgacc
     9661 agcagaacca gcttcagaac ggaaagatgg gctcatggct gtgaagtaga ttggcaggtc
     9721 tttttcttcc agaatctcgt tgcggtagta gttagtcaac ggcacttccg cagttgggat
     9781 gaggacgaag ttagtgtctg ccaactcaaa agtatcttcc ttgaacttag gatattgacc
     9841 agtaccgaac atagagtcgt ggttgaccat gtaaggtgtg atgatttctt ggtagccttc
     9901 tgcgatatgc tcgtccaaca tgaagttgta gagggcacgt tctaagcgag cacccaagtt
     9961 cttgtagaaa aggaagcgtg caccagttac ttttgcgcca cgttcccagt ccaaaatatc
    10021 caggtcttcg cccaaatccc agtgagcttt tggctcgaaa gtgaattcac gaggtgttcc
    10081 ccaacggcga acctctacgt tttcttcttc atccgcacca actggaacag aatcgtgcgg
    10141 cgtatttgga agaacggtga tgatggcgtt taattcttca tcgatttcca aaagctgagc
    10201 gtctaagttt ttcacatccg cagacagttt ctgcatggca gcaatcttgt cgtcagcgtt
    10261 ttccttattg cgttttgctt gggcaatctc cgcagaaacg gtgttgcgct ctgcttttaa
    10321 ttcttctaca gtaaccaaga tttcacggcg ttttgcatcc aattccttga tgtttgccaa
    10381 ggtttcagca gccacaccac gagtagctaa tttggcagcc actccgtcaa aatcagtacg
    10441 aatacgtttg atatctagca tagatgtctc ctttagaata aaaaagcaca gaatgagaga
    10501 tgctggagcg atatttaccg cggttccatc cagcttcaca ttctgtgcac ttgattgtat
    10561 tttgataatt tcataacggt agaatttcac aactttttcc tatctgctca cagcgaccgc
    10621 agactttctg gaaggagcca gatgctactt atccgtttct actattatac ttgaattttt
    10681 attttttggc aaatagattc gaaatttttc tgccgattgt ttgcataaga gtcggtaatt
    10741 tcacaacttt ttcattgccg atatgctcac gggcaatttt aagaatctta ccagaatctt
    10801 tagatgcaaa caagaatcga cttttctctg tataaatttc aaaatgacgg ctgattgctt
    10861 tgccagaaac gtttgcgcca atgctagtca tttctgacca aggaatctgg atatagcgtt
    10921 caacgttgct atctgggtag aattcaagtg ccttgtcacc aattagaaat ttaccaacct
    10981 tgccaccaaa gcccatgtag gaaacccctg tggtttgtag ttcaacgctt gtattttgtg
    11041 attgtgccat agtgctctct ccctagatat tcattatatc ataaaacccc gcaagagcgg
    11101 ggtccttgat tacataattc cgaagaaacg agcaagaata cctacgatga agagaccgat
    11161 aatcattgtg attggtgtta ctttcttctt aagcaagtgc atgcagagga aagtaaggag
    11221 aagtcccatc aaaccaggaa tcaagctgtc caactgacct tgtaatgttt gagcttgagt
    11281 tggttcaagg ctaagtccgc taagagcttg accaagaata cctttcaact cagcaccagt
    11341 aacagtacct tctgggaaga cgatgtaagc accttctgac aattgtttag caggaagatc
    11401 tacagcgaaa gtaatagata cccaacgttg aacaagaacg gcaaggatga acataccaag
    11461 gattgaagca cctttagtga tgtcttgaag gataccacca gacatgtctt tagtgatttc
    11521 gctaccagct ttgtaaccaa attcttgtgt ataccatagg aaggccatac gaatgatgtt
    11581 ccagccaagg aagaagatga ttggtcccat gatatttcca gatagtgcaa gtgaagcacc
    11641 aagagcacca aggattggac gaacagtaaa ccagaagact gggtcaccga taccagcaag
    11701 aggtcccatc ataccgattt tcacaccttg gatagctgtg tcatcgattt cagcaccatt
    11761 agcacgctct tcttcaaggg caagagttac accaaggatt ggtgaagcaa cgtatgggtg
    11821 tgtgttgaag aattccaagt ggcgctcaag agcagcagct tgatcttctt ttttagtgta
    11881 aagttttttg atagctggga tcattgcata agcccaacct aagttttgca tacgctcata
    11941 gttccatgaa ccttgaagga aggttgaacg ccaccaaact tttttacgat cgcttacgga
    12001 aagttgaatt ttttctgaca tgatgaatct cccttctctt agtagtcttc aaggatgtcg
    12061 ccgattgggt cgttagatga agcaccaccg ttacctgatc cgccttgttt tgacaagttg
    12121 aggtagataa gagcgattgc aacaccgata acaccaagtg cgataagtgt caatttgctg
    12181 atagcagcaa atgcaaaacc aagtgcgaag aatggccata cttcacgagt tgccatcatg
    12241 ttgataacca tagcataacc tacggcaaca accataccac caccaacggc cataccacct
    12301 gacaaccaag ctggcataga ttcaagaact gcttgaacag cttctgcagg aattgcaaga
    12361 agaagagccg caggaactgc gatacgcaaa ccttgaagga gaagagcaaa caagtggtaa
    12421 cgttctacag cagcgaagtt tgcatcttta gcagcattgt cagcaccgtg tacaagaccg
    12481 actgagatag tacgaacgat cattgtaagg aaaagaccag ctacggcaag agggatagca
    12541 gttgttgttg caacggcaat accttcagtt gagaagtcgc cacctttgat catgatgatt
    12601 gcagcagcta cagaagcaag agcagcgtca ggtgcaacag ctgcaccaat gtttgcccaa
    12661 ccaagtgcaa tcatttgtag agaaccacca agcataacac ctgcagccaa gttaccagtc
    12721 acaagaccga taagggtaca agctaccaat ggttgatgga attggaattc gtcaaggata
    12781 ccttcaagac cagcgaagaa ggcaacgatg acaacgagaa ttgcagaaat aagtgtaata
    12841 tctgacatgt tgtaatcctt tctatactaa cagatcgatt tattgaacgt ttgccttgtt
    12901 gataagttca aacaagtctt tcttcgaatc gtttggtact ttacgcacat caaattcaac
    12961 gccaaggtca cgcaattttt caaaggttgc aacgtcatct ttgtccattg acaatacgtt
    13021 gttaaccatt gttttaccag ttgagtgagc catagaacca acgttcaatt ctttgatttc
    13081 aacaccacct tcaattgctt caagagcttc ttgaggagtt tcgaaaagaa tcaaggcgtg
    13141 agtgttaccg aatcgagggt ctttagaaac ctcaatcaat ttcttgattg ggacaacgtt
    13201 cgcttttacg ttaccaggtg cagcttgttt gatgagttgt ttacgcaatt catctttggc
    13261 aactgtatct gatacaacga tgatacgatc tgctttggaa gcaggagtcc aaccagtcgc
    13321 cacttgaccg tgcaagagac gagtgtcgat acgggctaag ttgattttca acttgccatc
    13381 accgataaca gtacctggag ggatagcacc ttgtagtgca acaggagcag catcggcaac
    13441 aggagtagct tcagctggtt gaagttcttc tggaagaact ttgataccat ctttggcttc
    13501 cttgataatg tttgccgcaa cttcttccac gccagcagca gcgttaatca tacgctctgt
    13561 gtaagcttgg ataagcattg gcaagtttag accggtgatg atagcaaact tacgatctgg
    13621 attttcacca gctacacggc ttgcttggtt gaatggtgaa ccactccaaa ggtcagccaa
    13681 aaccaaaact tcatcatcgg catcgaatgc gtccacggca gcatttagct tagcgtataa
    13741 atcatctgga ccttcacttg gcataaaagt aacaacttgt actttttctt gttcgccaaa
    13801 gatcattgaa cctgactgat gaataccagc agcaaattcg ccatgacttg caataatgat
    13861 tccaatactc attattgatc ctcctaaatt tttcttgttc atgtaaaaac cattgaatgg
    13921 gctttcatgt tcgaactata ccattataaa acgttttcag tacatttgtc aagtaggttt
    13981 gtgttaaaag tgcaaaatat ttccaaaact tttcataatc atgtatcaga aaagtgataa
    14041 aaatatgcaa cgaatatgac aaaaacctga cagtttatca ggttttttga tgtctataaa
    14101 aataggtttt ctagttcacg tgcgacacca tcttcaaaat tagcaaatgc tgtcaatctg
    14161 tcggcatgtg gacgaagtgt atcgctacaa tttttcatgg cataggctgt tcctgctagg
    14221 tctagcatct caacatcgtt gtgctcatcg ccgaaggcaa ttaagtcgct aggagtggct
    14281 tggtagaggt taagaacata gctcagagcg gttgccttat tgacaccttt tgcacaagtt
    14341 tcgaggatat ttaatggtcc gccccacgta ttgatttcta actcatcttt gaaataggca
    14401 ttcatttctt ttgcaagttc atacttatca gttgcacgag tctgcataag gatggaatga
    14461 ggatcactag tgattaattc aggtttgatg agtgtatctg gagtaatctg ttcaaccccc
    14521 atcagagccg gatcaatctt atctaagttc ttttgagtga tgtagaattt attcttgtat
    14581 tcaccagcaa taaaatctgc ctcgaatgtt tcttcttctt ttagaaattc gagtaggtat
    14641 tttttgtcaa ttaaaatatt ttgttcccat tgccatttct ttccagggat gtgaactaaa
    14701 gaaccgttga aattaatcat gggagtatcc agttctagtt gttggtaaaa tttttcagcc
    14761 attcgatagg ggcgacctgt ggcgataaga acggtgtgtc ctgcttggcg gaccttcttt
    14821 atagttgaga tggtataatc agataattgg ctatcattat tgagcaatgt gccgtccaaa
    14881 tcgatagcta tgattttttt cttcatattt aatagcattc ctttctagag ttgttatact
    14941 agtttttaat agtaaataat gtttagctag tagctagatt gctgagaaat tgttttatgc
    15001 gtcaaagaat agtacttgta ggtaaccata tcttgaacta ataacttcca gtataacaaa
    15061 aggagataat aaaagcaaag aagcgataaa ttttgtatag atttttgtaa gtctgcaacg
    15121 ttcg
//
LOCUS       DASGCC010000049        15011 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.049, whole genome shotgun sequence.
ACCESSION   DASGCC010000049 DASGCC010000000
VERSION     DASGCC010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15011
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.049"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(41..826)
                     /locus_tag="U1404_001013"
     CDS             complement(41..826)
                     /locus_tag="U1404_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019770702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM5347978.1"
                     /translation="MVYTSLKSPEKDYTYDLHIAHLYGDLMNTYGDNGNILMLKYVAE
                     KLGARVQVDIVSLTDEFDKNFYDIAFFGGGQDYEQSILAKDLPTKKDSLADFIENDGV
                     MLAICGGFQLLGQYYIEAGGRKIDGLGIMGHYTLNQTNNRYIGDIKIHNDEFNETYYG
                     FENHQGRTFLADNQKPLGKVVYGNGNNKEDGGEGLHYKNTFGSYFHGPILSRNANLAY
                     RLVTTALRKKYGQDIQLASYADILSKEVAEEYGDVKSKAEFEK"
     gene            complement(826..2169)
                     /locus_tag="U1404_001014"
     CDS             complement(826..2169)
                     /locus_tag="U1404_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEM5347979.1"
                     /translation="MKVNTALGILAGKSSQFILKKLGRGTTLPGKIALKFDKHILDSL
                     AKDYEVVVITGTNGKTLTTALTVGILQEAFGEITTNTSGANMITGITATFLSAKKNKK
                     GKKIAVLEIDEASLARVTDFIKPSLIVFTNIFRDQMDRYGEIYTTYQMILDGAAKAPQ
                     ATILANGDSPLFNSTNVINPVKYYGFATEEHEPRLAHYNTEGVLCPHCHQIIQYKLNT
                     YANLGSYICNNCGFCRPELDYKLTDLKEITNTSSTFAIDGQDYKINIGGLYNIYNALA
                     AVSVAAFFGVTPEKIKAGFDKSKAVFGRQETFKLGDKDCTLVLIKNPVGATQAIEMMK
                     LAPYDFSLSVLLNANYADGIDTSWIWDADFEQITQMDIPQVFAGGVRSSEIARRLRVT
                     GYPENQITETPKLEDIMALIEQSSSQHAYILATYTAMLEFRDLLAQRQAVGKEMK"
     gene            2351..3205
                     /locus_tag="U1404_001015"
     CDS             2351..3205
                     /locus_tag="U1404_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HEM5347980.1"
                     /translation="MLNLNQLLDTGYWSSLIASPWTALLHLIDISIVVYLIYNFSKAI
                     AGTKIMTLIRGVFLFIIVQIIASLFGLQTIAWLINQVITYGVIAAVVIFAPELRAMLE
                     KLGRTTQIFGTNTVSAEEKLIVAFLKSVAYMSPRKIGALVAVEQAQTLQEYRATGIPL
                     NADISQELLINIFIPNTPLHDGAVIVKEDKVAVACAYLPLSESAGISKEFGTRHRAAI
                     GLSEVSDAFVFIVSEETGSISIARNGIFKHDLTLDEFEAELRATFISENVEKKSIWKR
                     LGGGKHER"
     gene            3195..3899
                     /locus_tag="U1404_001016"
     CDS             3195..3899
                     /locus_tag="U1404_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5347981.1"
                     /translation="MNDKFKAVGHLALSIFLALLLFFYATTTNYKNSESAAQNTESET
                     YVHTLSNVPIEIEYDTNKYFISGLSSTVAVELRGSNRVLLQRESDESTRTFQVTADLR
                     ELSDGTQTVKLQLTNLPAGVSATLAPDAITVKIGKKVSKAFPVAGRVYSNQLAEGYSL
                     SKVSVNVDTVKVTTDEETMAKIDRVEAVAMDVSNLSENYSGTAKLQAVDSDGNVLPVV
                     LSQTEANMQIILTKTK"
     gene            3912..5261
                     /locus_tag="U1404_001017"
     CDS             3912..5261
                     /locus_tag="U1404_001017"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006270661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEM5347982.1"
                     /translation="MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETDVPRV
                     FVARDTRISGQMLEAALIAGLLSVGIHVYKLGVLATPGVAHLVKTEKASAGVMISASH
                     NPAQDNGIKFFAGDGFKLDDALEAEIEALLDAEEDTLPRPSAQGLGDVVEYPEGLRKY
                     QQFLVSTGTDLDGMKVALDTANGAAATSARQIFVDLGADLTVMAEKPDGLNINEGVGS
                     THPEKLQELVKETGSQIGLAFDGDSDRLIAVDENGDLVDGDRIMYIVGKYLADRGLLA
                     KNTIVTTVMSNLGFHKALDREGIEKAVTAVGDRYVVEEMRKEGYNVGGEQSGHVILMD
                     YNTTGDGQLTAVQLTKIMKETGKKLSELAAEVTIYPQKLVNIRVENSMKDKAMEVPAI
                     AAIIEKMEAEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRAEIGI"
     gene            5407..6951
                     /locus_tag="U1404_001018"
     CDS             5407..6951
                     /locus_tag="U1404_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000025412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5347983.1"
                     /translation="MSILEVKNLSHGFGDRAIFENVSFRLLKGEHIGLVGANGEGKST
                     FMSIVTGQLQPDEGKVEWSRYVTAGYLDQHAKLEKGQSVRDVLRTAFDELFKTEARIN
                     DIYMSMAEEGADMDALMEEVGELQDRLESRDFYTLDAKIDEVARALGVMDYGMDKDVT
                     ELSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDI
                     PFLNDVINIVYHVENQLLTRYTGDYYQFQEVHAMKRAQLEAAYERQQKEIADLQDFVN
                     RNKARVATRNMAMSRQKKLDKMEIIELQAEKPKPSFDFKMARTPSRFIFQTTDLEIGY
                     DRVLTRKPLNLTFERNQKIAIVGANGIGKSTLLKSLLGIIPPLGGSVERGEYLELGYF
                     EQEVAGGNRQTPLEAVWDAFPALNQAEVRAALARCGLTSKHIESQIQVLSGGEQAKVR
                     FCLLMNRENNVLVLDEPTNHLDVDAKDELKRALQAYKGSILMVCHEPDFYEGWVDDVW
                     DFNELT"
     gene            7179..7826
                     /locus_tag="U1404_001019"
     CDS             7179..7826
                     /locus_tag="U1404_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5347984.1"
                     /translation="MTVGKTVPLDWFEKAQGKKLLGLACGGGQQGPIFAAHGYETTIL
                     DFSKEQLDKDRLVAERENLDLQTVQADMTQAFLFEDESFDIIFCPVSNVYVEDLTNMW
                     QESYRVLKKGGLLMVGYMNPWIYVFDSDDVWDYPDKTLVPKYSLPFNARQLEEAGQIT
                     IDPEYGYEFSHTLEEQIAGQLRAGFAMIDFYESKDSRNRLTQYASDYLANLSIKW"
     gene            7989..9194
                     /gene="sstT"
                     /locus_tag="U1404_001020"
     CDS             7989..9194
                     /gene="sstT"
                     /locus_tag="U1404_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEM5347985.1"
                     /translation="MNKIISVWKKMNLIRKIGIGVVLGVLLGLIAPKITVIALFGSLF
                     VGALKAIAPLLVLTLVAHALSQAPAGQKSNMRTVICLYLFGTFAAAFIAVGASYLFPI
                     KLVLSTTTTTDIIPPQGIAEVFQDLLLKVVDNPINALATANYIGVLTWAAVFGLAFRH
                     ASKTTKDLLQSAAEVTSKVVGWIIGLAPFGIMGLVFDTIANNGLTALKDYGLLLLLLV
                     GSMIFVALVVNPLIAFLVMKKNPYPLVFECIRVSGVTAFFTRSSAANIPVNMQLCKRL
                     GVDPDTYSVSIPLGATINMAGAAITINILTMAAVHTLGISVDFSSALLLSVVASLSAA
                     GASGVAGGSLLLIPVACSLFGIPNELAMQVVGVGFVVGVIQDSCETALNSSTDVLFTV
                     VAERSAWKK"
     gene            9456..10856
                     /gene="pepV"
                     /locus_tag="U1404_001021"
     CDS             9456..10856
                     /gene="pepV"
                     /locus_tag="U1404_001021"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HEM5347986.1"
                     /translation="MTVDFRAEFDKRKDEFLADLFDLLRINSERDDSQADAQHPFGPG
                     PVRALDKFLEIAQRDGYPTKNVDNYAGHFEFGEGDEVLGIFGHLDVVPAGSGWDTDPY
                     EPQIIDGRLFARGSSDDKGPTMACYYGLKIIKELGLPTSKKVRFIVGTDEESGWADMD
                     YYFENVGLPLPDFGFSPDAEFPIINGEKGNITAYLHFAGENSGAAKLHSFTGGLRENM
                     VPESATAIISGDLADLDSKLADFTAAYGLKADAETLENGQIQVTVIGKSAHGSTPEEG
                     VNGATYLAKFLSQFAFDGAAKAYLDLAGQVLLEDHDAQKLGVAIYDEQMGALSMNAGV
                     FKFDETSSDNTIALNFRYPKNTNPETIKAGLEKLGVEAVSLSEHGHTPHYCPIDDPMV
                     ATLLSVYEKHTGLKGHEQVIGGGTFGRLLKRGVAYGAMFPGDVNTMHQANEFIEVEQL
                     YRAAAIYAEAIYELIK"
     gene            10897..11355
                     /locus_tag="U1404_001022"
     CDS             10897..11355
                     /locus_tag="U1404_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5347987.1"
                     /translation="MKLKELTVADLEMVKQLFLSVFSQEPWNDDWSDEEQLDCYIGDL
                     LGHPRALCFGLFDPEKVIGLSLGYIRYWCEGTEYRIEEFCISRDYQGQGHGASLLADI
                     EKQLADRKIVHILLQTERNLSAYSFYKKCGFRALEEDVTMVKKVGHHGTC"
     gene            11342..11920
                     /locus_tag="U1404_001023"
     CDS             11342..11920
                     /locus_tag="U1404_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEM5347988.1"
                     /translation="MELADIRQAIIEDVANRDFTNKGIAPLFQAPSTAKILIIGQAPG
                     LKTQEKGRLFDDASGNNLRQWLGVDRQTFYESGHFAILPMDFYYPGKGKSGDLPPRKD
                     FAPKWHPLIMKQLPQIELTILVGNYAQTYYLEKSQRNLTERVKHADDYLPKYFPLPHP
                     SPRNNIWQAKHPWFVEQTLPILKNNINILLGK"
     gene            11992..12774
                     /locus_tag="U1404_001024"
     CDS             11992..12774
                     /locus_tag="U1404_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEM5347989.1"
                     /translation="MRKWKKIIIGCFALLTVCLLFAPTLARANQIPDRPTGTTVVDET
                     QLLSSETIAEIDQLNRSWASTEQALQVGVYVTESLSSDIESLANETFRHWQVGFAGTD
                     NGVLLVVAIADRAFRIETSDNAATVITDVEAKDILENAREFFRQEDYSGGISYIVNSI
                     GDRFYGTSIGKNQLAAIEEGTSEKDDGFWLFLIVILIAILFGIIDKSSRGGGGPGNLL
                     WMLVDDHHHYHNHHSSNSSSSSFGGGSWSGGGGGGGGASSGW"
     gene            12847..13428
                     /locus_tag="U1404_001025"
     CDS             12847..13428
                     /locus_tag="U1404_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM5347990.1"
                     /translation="MKKKWLAILLPILALLFLGMGAVGQYNGLVDSYAEVENAQANVD
                     TQLQCRYDLIPNVVAAVKGAMEHEEEIFTAIAEARAKIGSSQVGTSDYNQAQSQLDSA
                     VSRLLVVAENYPQLTANQQVSALITELEGTENRILVARKDYNSVATTYNKKIKRFPTS
                     IYANLFGYEKVELFQATNDAATTVPSVDLSDKE"
     gene            13440..14903
                     /locus_tag="U1404_001026"
     CDS             13440..14903
                     /locus_tag="U1404_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEM5347991.1"
                     /translation="MDFGFDILAIMIPIIVVVLFVLLFVFGYVSAKPNEAIVITGLGK
                     PRTLIGRSGFMIPFIEKRSYISIEQFSTDVQTTDFVPTLDFINVKADAVVKVKVGISD
                     ELLNAAAQNFLNWKTADISASIQDVLEGNLREIIGQMELRDMVNNRQAFAEKVQSNAA
                     PDLAKMGLEIIAFTVQSFTDDNDVIKNLGIDNIVTIQKDAANARAKAEREQAEVRARE
                     DKAANDARVAADLEIAKKQNELAIEQANLKRQSDVQLAQANAAYGIEEQAQRKEIERA
                     TAEANIVKQQKEAEVKAEEVKVREQELSATIRKQAEAEKYARQQAAEADLIERQRKAE
                     AELYETQREAEAQKARAEAAKYAAEQEAAGIEAKGRAEAEAIRLKLEAEAEGLSKKAD
                     AMAKFNDAAVTEMVVNVLPEIAKNIAAPLGNVDKITMYGEGNASKMVGDLMTTMDKTT
                     EGLGLNVRDLISATLTGRAMSTGLLTAQETKEAEGDK"
BASE COUNT         4256 a         2970 c         3621 g         4164 t
ORIGIN      
        1 aaaaatgaaa ccgcctctgg atatcagaag cggttttgct ttatttctca aactctgcct
       61 tgcttttcac atcgccgtat tcttcagcga cttctttgct gaggatgtcg gcgtagctgg
      121 caagttggat gtcttgtccg tattttttgc ggagggcagt agtgaccagg cggtaggcca
      181 ggttggcatt gcgggataag attggtccgt ggaagtagct accgaaggtg tttttgtagt
      241 gcagaccttc gccgccgtct tccttgttat tgccattacc gtagacaacc ttgcccagcg
      301 gtttttggtt gtcagctagg aaagtacgcc cttggtggtt ttcaaaaccg tagtaggttt
      361 cgttgaactc atcattgtga attttgatgt caccgatgta gcggttattg gtctggttga
      421 gggtgtagtg gcccatgatt cctagaccgt caatcttgcg accgccagct tcaatataat
      481 attgaccgag caactggaag ccaccgcaga tagctagcat gacgccatcg ttttcgataa
      541 agtctgctag gctgtctttt tttgtcggta aatccttagc aagaatggat tgttcatagt
      601 cctgtccacc gccgaaaaag gcgatgtcgt agaaattttt gtcaaattca tctgtcaggg
      661 aaacgatgtc cacctggaca cgagccccca gcttttcagc cacatactta agcatgagga
      721 tattgccatt gtcaccgtag gtgttcatca aatcaccgta gaggtgggcg atgtggagat
      781 cgtaagtgta atctttttca ggacttttta atgacgtata gaccattatt tcatctcctt
      841 tccaacggct tggcgttgag ccagcaggtc acggaattcg agcatagctg tataagtagc
      901 taaaatataa gcatgctggc tactcgattg ctcaatcaag gccatgatat cttctagttt
      961 tggtgtttca gtaatctggt tctcaggata gccagtcaca cggaggcgac gggcgatttc
     1021 agacgagcgg acaccacctg caaagacttg tggaatgtcc atttgagtga tttgttcaaa
     1081 gtcagcgtcc caaatccagc tggtatcaat tccgtcagcg tagttggcat tgagaaggac
     1141 ggacaggcta aaatcgtatg gagccagttt catcatttca atagcctgag tcgcaccgac
     1201 cgggttttta atcaagacca gtgtacaatc tttatcaccc agcttgaagg tttcttggcg
     1261 accgaagact gccttggact tgtcaaaacc tgccttgatt ttttcaggag ttacaccgaa
     1321 aaatgctgct acgctgacag ctgctagggc attgtagatg ttgtagaggc ctccgatgtt
     1381 gattttgtaa tcctgaccgt caatggcaaa ggtagaagaa gtattggtga tttctttcaa
     1441 gtctgtcaac ttatagtcca gctctggtcg gcaaaagcca cagttgttac agatatagct
     1501 gcccaagtta gcgtaggtat tgagcttgta ctggataatc tggtggcaat gaggacagag
     1561 aacgccttcg gtattgtaat gggccagacg aggttcatgt tcttccgtcg caaaaccgta
     1621 gtattttact ggattgataa cgtttgtcga gttaaaaagt ggactatcac cattggccaa
     1681 aatagttgcc tgcggagctt ttgcagcccc gtccaaaatc atctggtagg tggtataaat
     1741 ctcaccgtag cggtccatct ggtcacggaa gatattggtg aaaacaatca ggctcggctt
     1801 gataaagtcg gttacacggg caagacttgc ttcgtcaatc tccaagacgg caatcttctt
     1861 gcccttttta tttttcttgg cagacaaaaa ggttgctgta attcctgtga tcatattggc
     1921 accgctggta ttagtcgtga tttctccaaa ggcttcttgg agaatcccaa cggtcaaggc
     1981 agttgttaaa gtcttaccat tggttccagt aataacaacg acttcataat ctttagccaa
     2041 actatctaaa atatgtttat cgaatttgag ggcaattttc ccaggcagag tagtaccacg
     2101 tcctagtttt ttcaaaatga actgggaact ttttcctgct agaataccca aagctgtatt
     2161 tactttcatg ggactatttt atcataaaga ctggggattt tctagaatgg agtgtgttgg
     2221 aacgtgatat attcctgcag taaatctgta atatttttaa caggaaggtc actattttct
     2281 aaagaaaagg ggaaaaaata tggtataatg agtacattac tatgtatgag ttagaaagta
     2341 tgagaatgat atgttaaacc taaaccagtt actggataca gggtattggt cgagtttgat
     2401 agccagtcct tggaccgcgc tgctgcacct aattgatatt agtatagttg tttatttgat
     2461 ttataatttt agtaaggcta ttgcaggtac taaaattatg acattgattc gaggggtttt
     2521 tctcttcatt attgtccaga ttatagcgag tttattcggt ctgcagacga ttgcttggct
     2581 gattaatcaa gtaatcacgt atggggttat tgcggcagta gttatttttg caccagagtt
     2641 gcgtgctatg cttgaaaaac tcggtaggac aactcagatt tttgggacaa atacagtgag
     2701 tgcagaagaa aagttaattg ttgcttttct caaatcggtt gcttatatgt ctccgcgtaa
     2761 aatcggagcg cttgtggcag tagaacaagc ccaaacattg caagaatata gagcaacggg
     2821 gattccactt aatgcggata tatcacagga attgttaata aatattttca tcccgaatac
     2881 accgttacat gatggggctg taattgtcaa ggaagacaag gtagctgttg cttgtgctta
     2941 tttgcccctg tcagagagcg caggaatttc aaaggaattt ggaacacgac atcgtgcagc
     3001 cattggctta tcggaggtat ctgatgcgtt tgtatttatt gtctctgaag aaactggcag
     3061 tatctctatt gcacgaaacg ggatattcaa acatgatttg actttggatg agtttgaagc
     3121 agagttgcga gcgactttta tttctgaaaa tgtagagaaa aagtccatct ggaagcgatt
     3181 aggaggtggc aaacatgaac gataagttta aagctgtagg tcacttagcc ttatctattt
     3241 ttctagcatt gttgctcttt ttctatgcaa caaccaccaa ctataaaaat tcagaatcag
     3301 ctgcacagaa cacggagtca gaaacctatg ttcacacact gagcaatgta ccgattgaaa
     3361 ttgaatatga tacaaacaag tattttattt ctggactttc ttcgacggtg gcagttgaat
     3421 taaggggctc taatcgtgtt ctcctacaga gagaatcaga tgagtcaact cggacgtttc
     3481 aagtgactgc ggatttgaga gagttgagtg atgggacaca gactgtcaag ctacaattga
     3541 ccaatttgcc ggctggagtg agtgcgacac tagcacctga tgcgattacc gtcaagattg
     3601 gtaaaaaagt tagcaaggca ttcccagtag caggtcgagt atatagtaat caattggcag
     3661 aaggttacag tctgtctaag gtttcagtca acgtagatac cgttaaagtg acaacggatg
     3721 aagaaacaat ggctaagatt gatcgggtcg aagctgttgc gatggatgtg agcaatctgt
     3781 ctgagaatta tagtggtaca gctaaattac aggctgtaga tagcgacggc aatgtcttgc
     3841 cagttgtact gtctcagacg gaagcaaata tgcaaattat acttacaaaa acaaaataag
     3901 aggttatgaa aatgggtaaa tattttggga cagatggtgt ccgtggagaa gcaaacgtag
     3961 aattaacgcc agaattagca ttcaaattgg gtcgttttgg tggttatgtc cttagccagc
     4021 atgagacgga tgttcctcgt gtctttgtgg cgcgtgacac acgtatctca ggtcaaatgt
     4081 tagaggctgc cttgattgca ggacttctat cagtagggat tcatgtgtat aaattgggag
     4141 ttttggcgac accgggtgtt gcccacctag tcaaaactga aaaagcaagt gcaggtgtca
     4201 tgatttctgc aagtcataac ccagcacaag ataacggtat caaattcttt gctggtgatg
     4261 gtttcaaatt ggatgatgca ttggaagcgg aaattgaggc tcttcttgac gctgaggaag
     4321 acacattgcc acgcccatct gctcaaggtt taggagatgt ggtagaatat ccagaaggtc
     4381 tacgtaagta ccagcaattc ttggtgtcaa ctggtacaga tttggacggt atgaaagttg
     4441 ccctcgatac agccaatggt gccgcagcaa catctgcacg tcaaattttt gtagatttgg
     4501 gagcagattt gacagtaatg gctgaaaagc cagacggttt aaatatcaat gagggtgttg
     4561 gttcaactca tcctgaaaaa ttgcaagaac tggtcaagga aacaggaagt caaattggac
     4621 ttgcctttga tggtgacagt gaccgcttga ttgccgtcga tgaaaatggt gatttagtag
     4681 acggtgaccg tatcatgtac atcgttggta aataccttgc tgatcgaggt ctattggcca
     4741 aaaatacaat tgtgaccaca gttatgtcta accttggttt ccataaggct ttggatcgtg
     4801 aaggtattga aaaagctgtg accgcagttg gtgaccgcta tgtggttgaa gaaatgcgca
     4861 aggaaggcta caatgtcggt ggtgagcagt caggacacgt gattctgatg gattataata
     4921 ccacaggcga cggccagttg accgctgtgc aattgaccaa aatcatgaaa gaaactggta
     4981 agaagttgtc agaattggca gcagaagtga ccatttaccc acaaaaattg gtcaatatcc
     5041 gtgtggaaaa cagcatgaaa gacaaggcaa tggaagtgcc tgctattgca gctatcattg
     5101 aaaaaatgga agcagaaatg gctggcaacg gtcgtatctt ggtacgccca agtggtactg
     5161 agcccctctt gcgtgtcatg gcagaagcgc caacggatgc tgaagtcgat tactacgtgg
     5221 acaccattgc cgatgtggtc cgtgcggaaa ttggaattta agcagaaatc aatcatttgt
     5281 taagatgatt tcattgtctt gaactaccag attgattagg tggctagtag ttccactcaa
     5341 gactgcgaga ataaaagtaa aaactggagt ttggttactc cagttctttg atgttgtgag
     5401 gaaattatga gtattttaga agtaaagaat ttaagtcatg gttttggtga ccgcgcaatt
     5461 tttgagaatg tctccttccg tctcttgaaa ggggagcata tcggtcttgt cggtgccaat
     5521 ggagaaggga aatcgacctt catgtccatc gtgacaggtc aattgcagcc agatgaaggt
     5581 aaggttgaat ggtcacgtta tgtaacggca ggttatttag accagcatgc taaattagaa
     5641 aagggtcaat cagtccgtga tgtcttgcgg acagcattcg atgaactctt caagacagaa
     5701 gcccgtatca atgacattta catgtctatg gcagaagagg gtgccgatat ggatgccctc
     5761 atggaagagg ttggtgaact gcaggatcgt ctggaaagcc gtgatttcta tacgcttgat
     5821 gccaagattg acgaagtagc gcgtgcgctt ggtgtcatgg actatggcat ggacaaggat
     5881 gtgacggagt tatcaggggg acaacgaact aaagttcttc ttgcaaaatt gctcctggaa
     5941 aagcctgaca tcttgcttct ggatgagccg accaactact tggatgctga gcatattgac
     6001 tggctcaaac gctacttgca gaactatgaa aatgcctttg tcttgatttc gcatgacatt
     6061 cctttcttga atgatgtgat aaacattgtc taccatgtgg aaaatcagct cttgactcgc
     6121 tatacaggtg attactacca attccaagaa gtccatgcta tgaagcgggc tcagttggag
     6181 gcagcttatg agcgccagca gaaggaaatt gcagacttgc aggacttcgt taaccgtaat
     6241 aaggcccgtg ttgcgactcg aaacatggcc atgtctcgtc agaagaaatt ggacaagatg
     6301 gagattattg agcttcaagc agagaaacca aagccatcat ttgatttcaa aatggctcga
     6361 actccaagtc gctttatctt ccaaacgact gatttggaaa ttggttatga ccgtgtattg
     6421 acacgtaaac cgctcaatct gacctttgaa cgcaaccaga agattgccat tgtcggtgcc
     6481 aacggtatcg gtaaatccac tcttcttaaa agtttgctgg ggattattcc accgctgggc
     6541 ggttctgtag agcgtgggga gtatttggaa ctaggctatt tcgagcaaga agtagctggt
     6601 ggcaatcgtc agactccgct tgaagccgtt tgggatgcct ttccagccct taaccaggcg
     6661 gaagttcggg cagccttggc tcgttgcggt ctgacttcca agcatatcga aagccaaatt
     6721 caagttcttt caggtggtga gcaagccaaa gttcgcttct gtttgcttat gaaccgtgaa
     6781 aacaatgtct tggttctcga cgagccgacc aaccacttgg atgtggatgc caaggatgaa
     6841 ctcaaacgtg cccttcaagc ctacaagggc tctatcctca tggtctgcca cgagcctgat
     6901 ttctatgaag gctgggtgga cgatgtatgg gattttaatg aattgactta gattgaaagc
     6961 tatcgaacga tagctttttc tttgtgctta tactataata gaatgagcat agtaaaggag
     7021 gtaaaaaatg aaaagaacag aacgaggcca gatttgctag gcctctctag aggaagtaaa
     7081 acggtctggg gatagaccgt tttagctcaa caactagaaa taaagacttg ttgacgaact
     7141 ctttttgacc agtcgagttc tttcccactc gcgtttcttt gacggttgga aagacagtac
     7201 cgcttgactg gtttgaaaaa gcccaaggta agaaattgct gggtctagca tgcggtggtg
     7261 gtcaacaggg accaattttt gcggctcatg gctatgagac aactattttg gacttctcca
     7321 aggaacagtt ggacaaggat aggttagttg ctgagcggga aaatctggat ttgcaaacgg
     7381 tccaggcaga tatgacacaa gcctttcttt ttgaagacga gagttttgat atcatctttt
     7441 gtcctgtttc aaatgtttat gtcgaagatt tgaccaatat gtggcaggag tcttatcggg
     7501 tcttgaaaaa aggaggcttg ctcatggttg gctacatgaa cccttggatt tatgtatttg
     7561 acagtgacga tgtttgggat tatccagaca agaccttggt tccaaagtat agcctacctt
     7621 tcaacgcacg acaattagaa gaagcaggac aaatcacgat tgatccagaa tatggctatg
     7681 aatttagcca caccttagaa gaacagattg ctgggcaatt acgagctggt tttgccatga
     7741 ttgattttta tgaatccaaa gacagtcgca atcgcttgac tcaatatgcc tcagattacc
     7801 tagcgaattt atcgataaag tggtagaaac aagccaccga aagatggtct tttcaactca
     7861 gtaggtaaag ttgaaatgat tgtgcaagat ttttcaggct tccgctgtat aatatctcat
     7921 tttttatgct attgacctga ctggattttt ctgctatgat tgaaaaatgt ttgtttggag
     7981 gtaaatgagt gaataaaata atatctgtat ggaaaaaaat gaatttaatc cgaaaaatcg
     8041 gaattggtgt tgttttggga gtgttactag gcttaattgc tccaaaaata acggtcattg
     8101 ctctctttgg tagtctattt gtaggagcat tgaaagctat agcccctctt ttggttctga
     8161 cactagttgc acatgctcta tcacaagctc ctgctggtca aaaatcgaat atgaggacag
     8221 ttatctgctt gtatctattt ggcacttttg cggcggcctt cattgctgta ggagcaagct
     8281 atttattccc tattaaactg gttctttcta ctacaacgac tacggacatt attcctccac
     8341 aagggattgc tgaagtattc caagacctct tgttgaaggt cgttgacaat ccaatcaatg
     8401 ctcttgcaac ggctaattat attggtgtgt tgacatgggc ggcagtgttt ggcttggcct
     8461 ttcgtcatgc aagcaagaca accaaagatt tattgcaatc tgcggcagaa gtgacttcta
     8521 aagttgtagg ctggattatt ggtctggcac catttggtat catgggcttg gttttcgata
     8581 ccattgcaaa taatggtctg acagctttaa aagactatgg tttactgctc ttactcttgg
     8641 ttggaagcat gatttttgtc gcgcttgttg tcaatccctt gattgctttt cttgtaatga
     8701 agaaaaatcc ttacccgctg gtatttgaat gtattcgggt tagtggggtt acggcatttt
     8761 ttacaagaag ttcagcagct aatatccctg tcaatatgca gctctgcaaa cgtttaggag
     8821 tggatcccga tacatactca gtatccattc cgctcggtgc cacaattaat atggctggcg
     8881 cggctattac gattaatatt ttaacaatgg cagctgttca tacacttggc atcagtgttg
     8941 atttcagctc agctcttctt ttatccgttg ttgcatcact atcagcagca ggagcatctg
     9001 gggtagcagg tggctcgctt ctcctcatcc cagtagcatg tagtcttttt ggtattccaa
     9061 atgagttagc catgcaagta gttggagtcg gatttgtggt cggagtgatt caggactctt
     9121 gtgaaacagc cctcaactca tcaaccgatg ttttgtttac agttgtagca gaacgatctg
     9181 cttggaaaaa atagaaagaa gttgggagac caactttttt tcttcgcttt acttctgaaa
     9241 tctctttcat tttgtgataa aatagactta ctttgatata gtctttgggt ttacttttag
     9301 aactaggcaa cgagccgcag gcataactgg agttaggcaa ggtgagttca aacactccag
     9361 tggagtgttt gaagttggaa ataaggaaac gatgtttcct cgctcgtcga agtaataaaa
     9421 gataaaccaa atgacgacac tgaaaaggag aacatatgac agtagatttt agagcagagt
     9481 ttgacaaacg caaagatgag tttctagcgg acctctttga cctcttacgc atcaattctg
     9541 agcgtgacga cagccaggca gatgcccagc acccatttgg gccaggacca gtgcgtgcct
     9601 tggacaagtt tctagaaatt gctcagcgtg atggctatcc gaccaagaac gttgacaact
     9661 acgcaggtca ctttgagttt ggtgaaggcg acgaagtcct tggtattttc ggtcacttgg
     9721 atgtggtgcc agcaggaagc ggatgggata ccgaccccta cgagccgcaa atcatcgacg
     9781 gtaggctctt tgcccgcggc tcctctgacg acaaggggcc aaccatggct tgttactacg
     9841 gcttgaaaat catcaaggag ttgggccttc cgacctctaa aaaagtccgt ttcatcgtcg
     9901 gtaccgatga agagtcaggc tgggcggaca tggattacta ctttgagaac gttggtctgc
     9961 cattaccaga tttcggattc tctccagacg ctgagttccc gattatcaac ggcgaaaagg
    10021 gaaatatcac agcttatctt cattttgcgg gggaaaatag cggagctgct aaactgcatt
    10081 ccttcacagg cggcctgcgt gagaacatgg tgcctgaatc tgcgacagct attatctctg
    10141 gcgacctagc agacctggac agcaagttgg cagatttcac agcagcctat ggcctaaaag
    10201 ctgacgcgga aacccttgaa aacggtcaaa ttcaagtcac cgtcatcgga aaatcagccc
    10261 acggttcaac cccagaagaa ggtgtcaacg gagcaaccta tttggcaaaa ttccttagcc
    10321 aatttgcctt tgatggagca gccaaagcct atcttgactt agcaggacaa gtccttctgg
    10381 aagaccacga tgcccaaaaa ctcggcgtag ccatctacga tgagcaaatg ggagctcttt
    10441 ctatgaatgc aggtgtcttt aagtttgatg aaacctcatc tgacaacaca attgccctca
    10501 acttccgtta tccaaaaaat accaaccctg aaaccatcaa ggctggtttg gaaaaactgg
    10561 gcgtggaagc tgttagcctg tctgagcatg gccatacccc acattactgc ccaatcgatg
    10621 acccaatggt cgcaaccctc ttgtctgttt atgaaaaaca cacaggcttg aaaggtcacg
    10681 aacaagtaat cggtggcgga acatttggac gcctgctcaa acgtggcgtt gcctacggag
    10741 ccatgttccc aggcgatgtc aacaccatgc accaagccaa cgaatttatc gaagtcgagc
    10801 aactctaccg cgccgctgcc atttacgcag aagctatcta cgaactcatt aagtaataca
    10861 tgaagacggg tacgcccgtc ttttttagga ggaagaatga aactgaaaga actcaccgtt
    10921 gcagatttgg aaatggtcaa acagctcttc ttgtctgtct ttagccaaga accttggaat
    10981 gatgattggt cagatgagga acaattagat tgctacatag gcgatttact gggacaccca
    11041 agagcactct gttttggcct gtttgacccg gaaaaagtga tagggctgtc acttggttac
    11101 attcgctatt ggtgtgaggg aacagagtat cgaattgaag agttctgcat ttcccgtgat
    11161 taccaagggc aaggacatgg tgctagttta ttagctgata ttgagaagca gttagctgat
    11221 agaaaaattg ttcatattct tctgcaaacc gaacgcaacc tttcagccta ttctttctac
    11281 aaaaaatgcg gtttccgagc cttagaagaa gatgtgacca tggtcaagaa agtaggacat
    11341 catggaactt gctgatattc gtcaagccat cattgaggat gttgctaacc gagactttac
    11401 gaacaaggga atagctcccc ttttccaagc tccttcgacc gcaaaaattc tcattattgg
    11461 acaggcacct ggcttgaaaa cccaggaaaa agggcgttta tttgacgacg ccagtggtaa
    11521 caaccttcgt caatggttgg gcgtggatcg acagactttt tatgaatcgg gtcattttgc
    11581 tattcttcct atggatttct attatccagg aaaagggaag tctggggatt tgccgcctcg
    11641 caaggatttt gcgcccaaat ggcacccact cattatgaag caactccccc agattgagct
    11701 gaccatattg gtaggcaatt atgctcaaac ttattatttg gaaaaatccc aaaggaacct
    11761 gacggagaga gtgaaacatg cagatgatta ccttcccaag tattttcctt tgccccatcc
    11821 atcacctaga aacaatatct ggcaagctaa acatccttgg tttgttgaac agactctacc
    11881 gatactgaaa aacaacataa atatattgtt gggaaaatga taatatgata taattgtata
    11941 tatataccta ataaattttt cttatctttg ttcatcgaag gaggtgttct gatgagaaaa
    12001 tggaaaaaaa ttatcatcgg ctgtttcgct cttctaacgg tttgcttgct atttgctccc
    12061 acactagcta gagcaaatca gatcccagac cgacccacag gtacaacggt agtggatgag
    12121 acgcagttac tctcgagtga gaccattgca gaaattgatc aactcaatcg aagttgggca
    12181 agcaccgagc aagctttaca ggttggtgtt tatgtaacag aaagtctgtc cagtgatatt
    12241 gaaagtttgg ctaatgaaac ctttcgtcac tggcaggtcg gttttgcagg aacggacaac
    12301 ggagttcttt tagtggttgc catagctgac agagcatttc ggatagaaac ctcagacaat
    12361 gctgccacag tcatcacgga tgtagaagcc aaggatattc tagagaatgc aagggaattc
    12421 tttcgacagg aagactacag tggaggaatt tcctatatcg tcaactccat tggggatagg
    12481 ttttatggta caagcattgg taaaaatcag ttagctgcta tagaagaagg tacaagtgag
    12541 aaggatgacg gcttctggct gtttctcata gttattctga tcgctatcct atttggtatt
    12601 attgacaaat ctagtcgtgg tggtggaggt ccaggcaatc tactctggat gttggttgat
    12661 gatcatcatc actatcacaa tcatcactca tctaattcct catcgtctag ttttggcgga
    12721 ggtagttggt caggtggtgg aggcggcggt ggcggagcct cttctggatg gtaaggcatc
    12781 gtataaggct tctgatagtt gtttgctttt ttacgaatgt ttaatcgtag ttagaaagga
    12841 aatcttatga aaaagaaatg gttagccata cttctcccga ttctcgctct gctgttttta
    12901 ggaatgggag cagttgggca atacaatggc ttagttgaca gttatgctga ggttgaaaat
    12961 gcgcaagcca atgtagacac acagttgcaa tgtcgctatg acttgatacc aaatgtagtc
    13021 gcagctgtca aaggcgccat ggaacacgag gaagaaatat ttactgctat tgcagaagcg
    13081 cgtgctaaaa tcggttccag ccaagtagga accagcgact acaatcaggc acaaagtcag
    13141 ctagattcgg cagtgtctag attgttggta gtggctgaga attatccgca attaacagcc
    13201 aaccaacagg tatctgccct gataacagag cttgaaggta cggaaaatcg gatactggta
    13261 gcccgtaaag actataattc ggtagcaact acctacaata aaaaaatcaa gcggttcccg
    13321 acctccatct atgctaactt atttggctat gaaaaagtcg agcttttcca ggcaacaaat
    13381 gatgcggcga cgactgtacc aagtgttgat ttgagtgata aggaataaag gagataaata
    13441 tggactttgg atttgatata ttggcaatta tgataccaat tattgttgtt gtactatttg
    13501 ttttattgtt tgtatttggt tatgtgtctg ctaagcctaa cgaagcgatt gtcattactg
    13561 gcttgggcaa acctcggact ttaattggtc gttctggttt tatgattccc tttatcgaaa
    13621 aacgctccta tatctctatt gagcagtttt caacagatgt gcagaccaca gattttgtac
    13681 cgactcttga ttttattaac gtaaaagctg acgcggtcgt aaaagtaaag gttgggatat
    13741 ccgatgaatt gctcaatgcg gcagctcaaa acttccttaa ctggaaaact gcagatattt
    13801 ctgcctctat tcaagatgtc ttggaaggaa atctgcgtga aatcattggc cagatggaac
    13861 tgcgtgacat ggttaataac cgccaggctt ttgcagaaaa agtccaatcc aacgcagctc
    13921 ctgacttggc taaaatgggg ctggaaatca ttgcctttac ggttcaatcc ttcacagatg
    13981 acaacgatgt cattaaaaac ctgggtattg acaatattgt gaccatccag aaggatgccg
    14041 caaatgctcg tgccaaagca gagcgggaac aagcagaagt ccgtgcccgt gaggataagg
    14101 cggctaatga tgcgcgtgtt gctgcagact tagaaatcgc caagaaacag aatgaactag
    14161 ctattgagca agctaatcta aaacgtcagt ccgatgtcca actggcacag gcaaacgcag
    14221 cctatggcat tgaggagcaa gctcaacgga aagaaatcga gcgtgctact gctgaagcca
    14281 atattgtcaa gcaacaaaaa gaagcagaag taaaagcaga ggaagttaag gtccgtgaac
    14341 aagagctctc agctactatc cgcaaacagg cagaggcaga aaaatacgct cgtcaacaag
    14401 ctgcagaagc agatttgatt gaacgtcaac gcaaggcaga agcagaactc tacgaaacgc
    14461 agcgtgaagc ggaagctcaa aaagcgcgtg ccgaagctgc taagtatgct gcggagcaag
    14521 aagcggcagg tattgaggcc aaaggacgtg ccgaagcaga agccatccgt ttgaaactcg
    14581 aagcagaggc agaaggtctt agcaagaagg cggatgccat ggctaagttt aatgatgcag
    14641 cggtgacaga aatggtggtt aatgttcttc cagaaatcgc caagaatatt gctgcaccac
    14701 ttggaaatgt tgataagatt accatgtacg gcgaagggaa tgcctcaaaa atggtgggag
    14761 acctgatgac gaccatggac aagacaacag aaggtctagg actcaatgtc cgtgatttaa
    14821 tcagcgcaac cctaactggt cgtgccatgt caacaggttt actgactgcc caagaaacaa
    14881 aggaagcgga aggggacaaa taaaaataat aagcagttgg aagagatggg tgactgagta
    14941 ggtttacacc atcatttcca tcgcatgatt gtttcagaaa tccctacgaa gatgaaaatg
    15001 tttagaaaca g
//
LOCUS       DASGCC010000050        14915 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.050, whole genome shotgun sequence.
ACCESSION   DASGCC010000050 DASGCC010000000
VERSION     DASGCC010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14915
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.050"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(78..1052)
                     /locus_tag="U1404_001027"
     CDS             complement(78..1052)
                     /locus_tag="U1404_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM5347992.1"
                     /translation="MKQEKRRQLAKIAYLYYEEGKSQAEIAAETGIYRTTVSRMLTKA
                     KSEGIVKIEIQDFDRRLYRLEKYVQEKYGLKGLELVENSTDEDQLDLENRLAQAAADM
                     LTNLIDDGKKVGFSWGRSLSLIVDKIGNHRMKGVKFVPIAGGPSHIHARYHVNTLIYD
                     MANKFRGECSFINATIIQENQELAQGILSSKYFEELRADWKDLDVAAIGIGGRVDEKN
                     RQWLDMLTTADFQALSDEGAVGETCCRGLNQYGQAIVEDLQKRTIAISLDDLKEVPDT
                     IALAYGEEKAQAILAVLRAGYIHHLVTDERTIVKVLELDNDVHVHTNL"
     gene            complement(1065..1808)
                     /locus_tag="U1404_001028"
     CDS             complement(1065..1808)
                     /locus_tag="U1404_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5347993.1"
                     /translation="MERLDKIIQLVSQHEKIDVNSLAEQLDVSKVTIRKDLDKLESKG
                     LLRREHGYAVLNSGDDLNIRMSFRYDVKKRIAKEAANLIADNETIMIESGSTCALLAE
                     EICKTKRNVTIITNSYFIANYVRQYDSCQIILLGGEFQKDSQVTVGPLLHKMIQFFHV
                     DKAFVGTDGYDSEHGFTGKNLMRSEVVQYMSDVAENMIVLTDSSKFTKRGTVRRFGLS
                     QVAQVITDTSLSEDLVKELENARVTVRLV"
     gene            1940..2716
                     /locus_tag="U1404_001029"
     CDS             1940..2716
                     /locus_tag="U1404_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019321467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HEM5347994.1"
                     /translation="MNTRKGIIFNIQHFSLHDGPGIRTTVFLKGCPLRCPWCANPESQ
                     KRKPEPMLDAVSKKMTIMGEEKSVDDIISEVMKDIDFYEESGGGLTLSGGEIFAQYEF
                     AKAILMEAKRHGLHTAIETTAFVEHHKFVDLIQYVDFIYTDLKHYNTISHRKVTGVNN
                     NLIIQNIQYAFSIGKEIVLRIPVIPDFNNSLEDAEQFACLFNQLKIDKVQLLPFHQFG
                     ENKYKLLNRTYAMTDVKALHPEDLKDYQAIFIKHNINCYF"
     gene            complement(3013..3300)
                     /locus_tag="U1404_001030"
     CDS             complement(3013..3300)
                     /locus_tag="U1404_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1905 domain-containing protein"
                     /protein_id="HEM5347995.1"
                     /translation="MAKVYEFEAVIHPVPDKGGAYIIFPYDIREEFGKGRVKVHARFD
                     GHPYDGSIVNMGVKDEAGNICYIIGVQKATRLAIGKQAGDRVQVTIQERME"
     gene            complement(3311..3964)
                     /locus_tag="U1404_001031"
     CDS             complement(3311..3964)
                     /locus_tag="U1404_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM5347996.1"
                     /translation="MKINELEKRLLAVADASQAQPMKAYMKNHFDFLGVRTPDRRKVA
                     RQFFKESKAQGIDWEFVEACWSKPYREFQYIAIDYLVTKKKDLVLADLPRLKKLAQSK
                     SWWDSIDGLDKLVGKIVLDNPEAKQTILEWSLDDDFWLRRIAIDHQLLQKEKMDTELL
                     EKILVNNLNQIEFFINKAIGWSLRDYSKTNPDWVRAFLKKYSSQMAGLSIREASKYI"
     gene            complement(3954..4463)
                     /locus_tag="U1404_001032"
     CDS             complement(3954..4463)
                     /locus_tag="U1404_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM5347997.1"
                     /translation="MIDIRSARIEDAADLVAIYAPYVEKTAITFETEVPTVEAFASRI
                     EKTLEKFPYLVSVEEGKVVGYAYASTYYARAAYDWTVELSVYIKQEARGKGIGSLLYD
                     AIEEDLKARGFKNFLACIALPNPASLSLHKKRGYEQVAHFKNVGYKFDTWHDIVWLQK
                     SLVGKQNED"
     gene            complement(4464..5081)
                     /locus_tag="U1404_001033"
     CDS             complement(4464..5081)
                     /locus_tag="U1404_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5052 family protein"
                     /protein_id="HEM5347998.1"
                     /translation="MKLQKKIMLSVVLGLSLVSLSACQSIANWWKNTKEEWIGLEMTV
                     RTYDENSQLIDEMSGRSLSISRNQEFDSVDAEGYSNADSSVLKVTLGNYEIDHVGSSL
                     IAAEEGLEDLYAKYQTTVDIANYDRAIPLVNRMVSSLKNDFTGKAKVVLIRSQNGTPL
                     ATYVGDKVSLYASDAPKTSELLIDGKRLIIYRCDYTIYDRELLEN"
     gene            5239..6090
                     /locus_tag="U1404_001034"
     CDS             5239..6090
                     /locus_tag="U1404_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM5347999.1"
                     /translation="MKQFCAKHKMKLLIFLVVWSFFSGCKVLLTFFGKPDGMDGKYPL
                     FFLTISLVALYVFPMILIIRYIAKRFDISKKVIHLSWILGITASFYFSGLGQTLLGAF
                     WLFIVKPPQTFIQNWGAAVTAPFHEEFGKGLVVLLVLLLLKKLTLKNAVVSGMVVGLS
                     FQIIEDGLYVFQQIFKSKADGFATLIERMLHAGGTHWAFSLAFAVGLVALVSKNSGMS
                     KKQGLFWMLMAVLAHFFLNTPFNEGLTSNSGEITVLMLCFSFCVALAAFFKVDQIETN
                     QHTSNTY"
     gene            complement(6337..7648)
                     /locus_tag="U1404_001035"
                     /pseudo
     CDS             complement(6337..7648)
                     /locus_tag="U1404_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015631733.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-containing oxidoreductase"
     gene            7865..8674
                     /locus_tag="U1404_001036"
     CDS             7865..8674
                     /locus_tag="U1404_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018381403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM5348000.1"
                     /translation="MKEKFQMCKTYLPVVLATIGFVNGCKIIFGELGKPNGMEAKYPL
                     FLLTISLVAIYILPLLVLTYSLAKRYNISKQVIGLSWLLGLTSSVSFSELGHTAIGYF
                     LLEIVKASNDFLNDWGAAISGPLAEEIGKGLTVLLVLLICRKMTLKNALVSGVIVGLG
                     FQIMEDITFVFRDMFMNKLDGFETILERVGQAGWAHWVFTLLFAIGLVALLTKNTGMS
                     KAQGVFWIGASFGIHFLFNSPFNTGIFQTVFPILSISLGLLAYQTVEKLSE"
     gene            complement(8718..10388)
                     /locus_tag="U1404_001037"
     CDS             complement(8718..10388)
                     /locus_tag="U1404_001037"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEM5348001.1"
                     /translation="MKTDIEIAQSVTLKPITEIVEKVGISFDDIELYGKYKAKLSFDK
                     INAVKDNAPGKLILVTAINPTPAGEGKSTVTIGLADALSKIGKKTMIALREPSLGPVM
                     GIKGGAAGGGFAQVLPMEDINLHFTGDMHAITTANNALSALIDNHIHQGNAVGIDQRR
                     IIWKRVVDLNDRALRKVTVGLGGPLNGIPREDGFDITVASEIMAILCLATDINDLKER
                     LANIVIGYRFDRSPVYVRDLAVEGALTLILKDAIKPNLVQTIYGTPAFVHGGPFANIA
                     HGCNSVLATTTALRLADYTVTEAGFGADLGAEKFLDIKVPNLPKAPDAVVIVATHRAL
                     KMHGGVAKTELSAENVEAVKAGFSNLKRHVENIQKYGIPAVVAINEFVSDTADEIAAL
                     KELCAEIGVPVELASVWANGADGGVELAETVVATIENQAANYQRLYKAEDSLEEKVTK
                     IVTQIYGGSGVVFEKKARNQLTEFAKNGWDKLPVCMAKTQYSFSDDQFALGAPTDFDI
                     TVREFVPKLGAGFIVALTGDVMTMPGLPKAPAALNMDVAADGTAIGLF"
     gene            10892..11587
                     /locus_tag="U1404_001038"
     CDS             10892..11587
                     /locus_tag="U1404_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate--cysteine ligase"
                     /protein_id="HEM5348002.1"
                     /translation="MKLLITSGGTSEAIDQVRAITNHASGNLGKIIAEQALKRGHEVT
                     LVTTRQAVKPDSQKNLTIIEITNVDSLKETLEPLVKSHQALIHSMAVSDYTPVYMTGL
                     DELRATEDSSSLLKKQNTESKISSKDDYQVLFLKKTPKVISYVKKWNPAITLFGFKLL
                     VNVPKEELFAVARQSIERNGADYILANDLKDIGENQHIAYLVDKTREIQAQTKDEIAQ
                     LILNTLEKGEQNG"
     gene            11580..12128
                     /gene="coaC"
                     /locus_tag="U1404_001039"
     CDS             11580..12128
                     /gene="coaC"
                     /locus_tag="U1404_001039"
                     /EC_number="4.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HEM5348003.1"
                     /translation="MANITLAVTGSISAYKAADLTSQLTKLGHQVTVLMSRSAMDFIT
                     PLTLQSLSKNLVHTDVMIEENPTLIKHIDIAKETDVFLVAPASANTIAKLANGMADNI
                     ITATALALPIGTKKLLAPAMNTNMYLNPATQKNIKTLIEYGFEEIKPREALLACGDFG
                     TGALAEVTDILEKVSNTLDEKK"
     gene            12115..12684
                     /locus_tag="U1404_001040"
     CDS             12115..12684
                     /locus_tag="U1404_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5348004.1"
                     /translation="MKKNKSTQIATIAIFFAVMIVINILSSIIFNILPVPIKPTIVHI
                     PVIIASIIYGPRVGACLGALMGLMSMTHNTIILLPTSYLFSPFVENGNVYSIIIAVVP
                     RILVGITPYFVYKWIKNRKGLFIAGAIGSMTNTIFVLGGIFFLFSSVFDGNIQAMLAT
                     VLGTNSIAEMIISSVLTAALVPTLQKIQK"
     gene            12775..14493
                     /locus_tag="U1404_001041"
     CDS             12775..14493
                     /locus_tag="U1404_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM5348005.1"
                     /translation="MTYQETYQTWLDFADLPDYLREELVAMDEKTKEDAFYTNLEFGT
                     AGMRGYIGAGTNRINVFVVRQATEGLAKLVESKGEEAKKRGVAIAYDSRHFSPEFAFE
                     SAQVLAAHGIKSYVFESLRPTPELSFAVRHYNAIAGIMVTASHNPKEFNGYKVYGEDG
                     GQMPPADADALTNFIRAIDNPFAVELADLEASKENGLITVLGEETDVKYLEELNDLNI
                     NPELIAEYGKDMKIVYTPLHGTGEMLARRALAQAGFESVQVVEAQATADPDFSTVASP
                     NPESQAAFALAEELGREVGADVLLATDPDADRVGVEVRQADGSYWNLSGNQIGAIIAK
                     YILEAHKQAGTLPANAALAKSIVSTELVTKIAESYGATMFNVLTGFKFIAEKIQEFEE
                     KHNHTYMFGFEESFGYLIKPFVRDKDAIQAVLMVAEIAAYYRSRGMTLADGIDEIFKE
                     YGYFAEKTISVTLSGKDGAEQIKAIMAKFRDNSPAQFNATDIAVFEDFALQTKTDKDG
                     NIEKLTTPPSDVLKYTLADDSWFAVRPSGTEPKIKFYIATVGETLAEAEEKISNIEKE
                     INEFVG"
     gene            complement(14656..14915)
                     /locus_tag="U1404_001042"
                     /pseudo
     CDS             complement(14656..14915)
                     /locus_tag="U1404_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003002869.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4401 a         3360 c         2697 g         4457 t
ORIGIN      
        1 aatttatttc tgcacttttg tgcatttttg gggataaaaa aatacttcaa ccacctttaa
       61 gcgattgaag tactctctta caaatttgta tggacatgca catcattatc cagttctaaa
      121 acttttacga tggttcgttc atctgttacc agatgatgaa tgtagccagc tcgcaataca
      181 gctaaaatgg cttgagcctt ttcctcccca tatgcaagag ctatggtatc tggaacttct
      241 tttaaatcat ctaaagagat ggcaatggtc ctcttttgca aatcctcaac gatagcttga
      301 ccgtattgat tcagaccacg acaacaggtt tcaccgactg caccttcatc tgataaggct
      361 tgaaagtcag ccgtcgtcaa catatctaac cattgacgat ttttttcatc gactcgaccg
      421 ccaataccta ttgctgctac atctaagtcc ttccagtcag cacgtagctc ctcgaaatat
      481 ttagaagaaa gaataccttg agcaagttct tgattctcct ggataatcgt cgcattgata
      541 aaactacatt ctccacgaaa tttattggcc atatcgtaaa tcagagtatt cacatgataa
      601 cgtgcgtgga tatgacttgg accgccagct attggaacaa atttgacacc tttcatacga
      661 tgattcccta tcttatctac aataagactg aggcttctcc cccatgaaaa accaactttc
      721 tttccatcat caatgagatt ggtaagcata tcggctgcag cctgtgccag acgattttct
      781 aaatcaagct ggtcctcatc ggtgctgttt tcaaccagtt ctaaaccttt taatccatat
      841 ttttcttgaa catatttttc taatcgatat aggcgcctat caaaatcttg aatttctatt
      901 tttacaatgc cttctgactt agccttggtc aacattctac tgactgtcgt tctataaatt
      961 cctgtctcag cagcaatctc agcttggctt ttcccctctt cgtagtaaag ataggctatt
     1021 tttgccaact gccttctttt ttcttgcttc atactgcctc caacctaaac tagccttact
     1081 gtgactctag cattttctaa ttccttgaca agatcttcag aaagcgacgt atctgtaatg
     1141 acctgagcaa cttgacttaa accaaatctg cgtactgtcc ctcgttttgt aaatttacta
     1201 gaatctgtta acacaatcat gttttcagca acgtcagaca tgtactgtac tacttcgctt
     1261 cgcattaagt ttttacctgt aaaaccatgc tcactatcat agccgtcagt tcctacaaaa
     1321 gccttatcaa catggaaaaa ctgaatcatt ttatgcaaga gcggcccaac tgttacttgg
     1381 gaatcttttt gaaactcacc acccaataaa ataatctgac agctatcata ttgtcgcaca
     1441 taattggcta taaaataaga atttgttatg atggtcacat ttctcttggt tttgcaaatt
     1501 tcttctgcca agagagcaca agttgaccca gactctatca taatcgtttc attgtcggcg
     1561 ataagatttg ctgcttcttt tgcaattcgt ttttttacgt catagcgaaa ggacatccga
     1621 atattaaggt catcgccact atttagaaca gcatagccgt gttctctacg taataaacct
     1681 tttgattcta acttatctaa atctttacgg atggttacct tagaaacgtc cagttgctcc
     1741 gccaaactat tgacatctat tttttcatgt tgtgatacca gttgtataat tttatctaat
     1801 cgttccattt catcacctca tcattattct atcaaatttt gactcttttt caactatttg
     1861 caacctttca acttacgttc gtaattgtaa aactttcttt tgtgtgataa aatcaaatta
     1921 atcgaaaagg agaaagagca tgaatacacg aaaaggcatt atttttaaca ttcaacattt
     1981 ttcgctccat gacggtcctg gtatacgtac gacggttttc ttgaaaggtt gccccctacg
     2041 ttgtccttgg tgtgcaaatc cagaatctca aaaacgaaaa cctgaaccca tgcttgatgc
     2101 tgttagtaaa aaaatgacca tcatgggaga agaaaaatct gttgatgaca tcatatccga
     2161 agtcatgaaa gacattgatt tttatgaaga atctggtggt gggctcacgc tgtctggcgg
     2221 agaaattttt gcccaatatg agtttgcgaa agctattctt atggaggcaa aaagacacgg
     2281 ccttcatacc gctattgaaa ccaccgcttt cgtagaacac cacaaatttg ttgaccttat
     2341 ccaatacgtt gactttatct atactgattt aaaacattac aatacaattt ctcatagaaa
     2401 agtcaccggc gtcaacaata accttatcat acaaaatatc caatacgcct tttccatcgg
     2461 gaaagaaatc gtcctacgta tccctgttat ccctgacttt aataattccc tcgaagatgc
     2521 tgaacaattt gcctgtctct ttaatcaact caagattgac aaagttcaac tactcccctt
     2581 ccatcaattt ggagaaaata agtataagct tctcaatcga acctatgcta tgaccgatgt
     2641 caaggctctc catccagaag atttaaaaga ctatcaagca atcttcatca aacataatat
     2701 caactgttat ttctaacttt gagaaataca aaaacttcct cggctgagcc aatagcattc
     2761 ctatagaaat cacatactga aatatgcttc tgatagagta tctgaagcat acttagtata
     2821 taaaaaaggc ccaccataaa ggtgggccag ggcatcgttt ccgatgagaa tagaaggttc
     2881 acacaactat tcaaggtccg ctcctgcgtt tcaattaaat gaagacctcc ctagcgtcga
     2941 aagtgacaaa gtcactactc ggctcatcgc atgaatctat tctaccataa tctcaaggat
     3001 ttgcaagcct gattactcca ttcgttcttg aatggttact tgtactctat caccagcctg
     3061 ttttccaata gccagtcgag tagccttttg aacgccaata atataacaga tattgcctgc
     3121 ttcatcctta actcccatat tgacaatgga gccatcatag ggatgaccat caaatctggc
     3181 atgtaccttt accctcccct tgccaaactc ttctcgtata tcatagggaa agatgatata
     3241 ggctccgccc ttatccggta ctggatgaat gaccgcttca aattcatata cctttgccat
     3301 aacagccctc ctagatatat ttactagctt cacgaatgga taagcctgcc atttgggaac
     3361 tgtacttttt tagaaaagcc cgtacccagt caggattggt cttggaataa tctcgcaaac
     3421 tccagccaat cgccttgtta atgaaaaatt caatctgatt gagattgttg accaaaatct
     3481 tctcaagaag ttccgtatcc atcttttctt tttggagaag ctggtggtca atggcaatcc
     3541 gcctcaacca gaaatcatca tccaaactcc attccaagat tgtctgcttg gcctctggat
     3601 tgtccaaaac aatcttaccg actaatttat ccaagccgtc gatactatcc caccaagact
     3661 tactttgagc cagttttttc aaacggggta aatcagctag aaccaagtct tttttcttgg
     3721 taaccagata atcaatggcg atatattgaa actcacggta gggcttagac cagcaagcct
     3781 ctacaaattc ccagtcaatt ccctgagcct tagattcttt gaaaaattgc ctagcaactt
     3841 ttcggcggtc aggagttcgc acacctagaa agtcaaagtg attcttcata taggctttca
     3901 tgggttgagc ttgactggca tccgccacag ccaacaaacg tttttctaat tcgttaatct
     3961 tcattttgct tacctacaag agatttttga agccagacaa tatcatgcca ggtatcaaat
     4021 ttataaccaa catttttgaa atgtgctacc tgttcatacc ctctcttctt atgaagagaa
     4081 agcgaggctg gattaggaag agcaatacag gctaaaaagt tcttaaagcc acgcgctttc
     4141 aaatcttcct ctatggcatc atataaaaga cttccgattc cttttccacg tgcttcttgc
     4201 ttgatatata cggataattc caccgtccaa tcgtaagccg cacgggcata gtaggttgaa
     4261 gcgtaggcat aacccacaac tttaccttct tctactgaga ccagataagg aaacttctcc
     4321 aaggtctttt caattcgact tgcaaaggct tcgacagtcg gtacttctgt ttcaaaggta
     4381 atagcggtct tttctacata aggagcataa attgccacaa ggtctgccgc atcctctatc
     4441 cttgcggaac gaatgtctat catttagttc tccaataatt ctctatcata aattgtataa
     4501 tcacaacggt agataatcaa ccgcttgcca tcaattaaga gttcagaagt cttaggtgca
     4561 tcagatgcat aaagagacac tttatcacct acatatgtag caagcggggt tccgttttgc
     4621 gaacgaatca aaaccacctt tgccttacct gtaaaatcat ttttgagact agataccata
     4681 cgattaacaa gcggaattgc acgatcgtaa tttgcaatat ctactgtggt ctgatatttc
     4741 gcatacaagt cttccaaacc ttcttctgct gcaatcaaag atgagcctac gtggtcaatt
     4801 tcgtaattcc caagtgtcac cttcaagaca gacgaatccg cattggaata gccttcggca
     4861 tccaccgagt caaattcctg attccgcgaa atcgaaaggg atctaccaga catttcatct
     4921 atcaattgag aattttcatc gtatgtcctt accgtcatct ccaaaccaat ccattcttcc
     4981 ttggtatttt tccaccaatt cgcaatggac tgacaagcag acaaactaac aaggctcaaa
     5041 ccaagaacaa cagataacat gattttcttt tgcaatttca tataatagtc ctccaacata
     5101 ttttacttat tatatcacgg aatacaaaaa ccgagaaaaa atagatagac ctgagataat
     5161 aaaaagatgg caatgataaa ctatagcacg gtagggataa ctgacatcta ctaaattaat
     5221 ataaaggaag tcatttttat gaaacaattc tgtgctaaac acaaaatgaa gctacttatt
     5281 tttctagtcg tttggagttt tttctctggc tgtaaagttc ttcttacctt ttttgggaaa
     5341 ccagatggaa tggacggaaa gtatcctctc ttctttctaa ctatttcctt agttgcactt
     5401 tatgtcttcc ctatgattct tatcattcgt tatatagcga aacgttttga tatttctaaa
     5461 aaagttatcc atctcagttg gattttgggt ataacagcta gtttctactt ctctggtctt
     5521 ggtcaaacgc ttttaggagc attttggtta ttcatcgtca aaccacctca aacatttatc
     5581 caaaactggg gagcagctgt caccgctccc ttccatgaag agtttggtaa gggcctagtt
     5641 gtactactcg tactcctatt gctaaaaaaa cttactctaa aaaatgccgt agtcagcggt
     5701 atggttgtag gtttgagttt ccaaattatt gaagacggtc tctatgtctt ccaacaaatc
     5761 tttaaatcta aagcagatgg cttcgccact cttatcgaac gtatgcttca tgctggtgga
     5821 actcactggg ccttctccct tgcattcgca gtcggtttgg tcgctctcgt ctcaaaaaat
     5881 agtggcatgt cgaaaaaaca aggacttttc tggatgctga tggctgtctt agcacacttt
     5941 ttcttgaata ctccattcaa cgaaggacta acatctaact ctggtgaaat aaccgttctc
     6001 atgctctgct ttagtttctg cgtggcactt gctgcatttt tcaaagtaga ccaaattgaa
     6061 acgaatcagc acaccagtaa cacatactga aacaagcctg cattgacagg cttttgttat
     6121 gttacaaacc aagtattcga aatggttgtt gattcatcaa tatctattat cagtctttat
     6181 cccattccat cggtccaaga aatcgcagat aattataaaa aaccgcccat tacggacggt
     6241 catagtcagt caatgaaata aggtcgctcg atgatcttga cactagtcta ggaaacgcag
     6301 ccacaactaa tacaagaagc ttatctccct agagtattaa aaattaaaga cgtcattcaa
     6361 attctcagcc atagtcgggt gagtgaaaat ctgtgttttg aagtagctat aaggaatctt
     6421 attgtcaatc gccatagcaa tcaagttaat cagctcctct gaattgcgac caaagagagt
     6481 cgcccccaga acaagcttac tttccttatc cacgataacc ttgaaaatgc ctttgaggtc
     6541 attattgaca tgggcacgtg gcatattggc gacaggcaat tcgttggcaa tgtagtcgta
     6601 acctgcttcc ttggcttcct tctcggtcag accgacacga gacagcacag gcgtaataaa
     6661 gacgctggtt ggaatagact tacgttggct caagctataa gttccagtcc cagtcaactt
     6721 gccgaaaacg atacggaagt cgtctaggga tgtgtaagtg aattgtggtc cgccattgac
     6781 atctcccacc gcatagacac ctggaacagt cgtttcgcag tagtcatcca ccttaacagc
     6841 accattttcc aaaagctcaa tcgccgtatt ttccaagccc aagtcagcag tgttcggcac
     6901 ccgacctgtc gcatagagga cggcgtcgaa gattgccgtt tcgccattaa ccgtcacagc
     6961 aacttgctcg cccgcagctg ctacttgctc gagtttcgca cccaagacaa aggtcacgcc
     7021 agcttcttcc atatactcct tggctaactt agcaaccact tcctcttctc tcggtaaaat
     7081 agcagagctg acttcatata ccgtcacctg gctgccgagt ttgctgtaaa gcccagcaaa
     7141 ttccaatcca atgttgcctc caccgataat tgccaacgtg ttaggacgag tttccaagtt
     7201 ctgaatgcct gtgctgtcat aaacgtgagc tgtatccaac aagcctggaa ttggaagcac
     7261 gcgcgactta gcacctgtat tgatgacgat ggtttccgca gttagttgaa tggattcctc
     7321 accagccgat acttccacaa ccttgtctgc aacaaaacgt gcgtgtcctt gatacaaact
     7381 agcaccactg cctttcaaga ctgcctcgtt tttgtttcgc agacgagtgg tgactgtttc
     7441 tttttgatcc attacctgct caaaagttca gtttttatct gctgctacca agagggtctt
     7501 ggttggaata cagccaatat tgatacaagt cccgccaaac atagcagtat tttcctcaac
     7561 caaggcaacc tttttcccag ctactggcag cttacctgct aaggtcttta catccaaaac
     7621 caatgaccaa taaatcatat tgttccataa catactcctt ttatttttta aaccttagtc
     7681 tagcaaaaaa gaaaatttga gacacaattc cgttacggct ctattatgga gtcctagttg
     7741 caggaaaaaa cattacaata accgataagg tttagataaa aaataggcga attatagaca
     7801 aaatgtactc atttttgata caatgtatcc atacaccagt ttattaatac agaaaggtca
     7861 aactatgaaa gaaaaatttc aaatgtgtaa aacctatctt ccagtcgtct tagcaacgat
     7921 tggatttgtc aacggttgca aaattatctt tggagaatta ggtaagccaa atggcatgga
     7981 agctaaatat cctctctttc tcctaaccat ttccttggtc gctatttaca tcctccccct
     8041 actagtactg acatattcct tagctaaacg ctataacatc tccaaacaag ttataggtct
     8101 tagctggctt ttaggcttaa caagtagcgt ctctttttct gaactgggac atacagctat
     8161 cggatatttc ctgctcgaaa ttgttaaagc tagtaatgat ttcctaaatg actggggtgc
     8221 agctatttca ggtccattgg cagaagaaat cggtaaaggg ctaactgttc tacttgtact
     8281 gcttatttgt agaaaaatga cactaaaaaa tgcattggta agcggagtga ttgttggatt
     8341 aggtttccaa atcatggaag acatcacctt tgtttttaga gacatgttca tgaataaatt
     8401 agacggcttt gaaaccattc ttgaacgcgt tggtcaagct ggttgggccc attgggtttt
     8461 cacgcttctc tttgccattg gcttagtagc ccttctcacg aaaaatacag gtatgtcaaa
     8521 agcacaggga gtattttgga tcggtgcaag ctttggaatc cattttctct ttaattcacc
     8581 attcaacact ggtatcttcc agacggtgtt tcctatcttg agtatttccc ttggcttact
     8641 tgcctatcaa acggttgaga aactatctga atagacaaaa aatccgcctt tgagcggatt
     8701 ttttatattc attcttgtta gaacaagccg atagctgtcc cgtctgctgc cacatccatg
     8761 ttgagagctg cgggagcttt tggcaaacca ggcatggtca tgacatctcc agtcaaggca
     8821 acgataaagc ctgcacccaa ttttggcaca aattcacgga ctgtaatgtc aaagtctgtc
     8881 ggcgctccaa gggcaaactg atcatctgag aagctgtact gggtcttggc catgcagact
     8941 ggcaacttgt cccaaccatt cttagcaaat tcagtcagct ggttacgagc tttcttctcg
     9001 aaaaccacac ctgagccacc ataaatctgc gtaacaatct tggtcacttt ctcttccaag
     9061 ctatcctcag ccttgtaaag acgttggtag tttgctgctt gattttcaat agtagcaaca
     9121 actgtctcag ccaattcaac accaccatca gcgccatttg cccaaacact tgccaactcg
     9181 acaggtacgc caatttcagc gcaaagttcc ttcaacgcgg caatttcgtc agctgtgtca
     9241 gatacaaatt cattgatagc aacgactgct ggaataccgt atttctgaat attttcaacg
     9301 tgacgcttca agttagaaaa accagctttc actgcctcta cattttcagc agaaagttct
     9361 gtcttggcta caccaccgtg cattttaagc gcacggtggg tagcaacaat gactactgca
     9421 tccggagcct taggcaagtt cggcaccttg atatctagga atttctctgc tccaaggtct
     9481 gcaccaaaac ctgcttctgt tacggtatag tcggccaaac gcagagctgt tgtagttgca
     9541 agaactgagt tacagccatg agcaatatta gcaaatggac ctccgtggac aaaggctggc
     9601 gtgccataga tggtttggac aaggtttggt ttaatagcgt ccttcaaaat aagagtcaaa
     9661 gcaccttcca ccgccaaatc acgcacgtag acaggactgc gatcgaaacg ataaccgata
     9721 acaatatttg ccaaacgttc tttcaagtca ttgatgtctg tcgccaagca taaaatcgcc
     9781 atgatttcag aagctacggt aatatcgaat ccatcttcac gcggaatacc attgagcgga
     9841 ccacccaatc caacagttac tttacgcaaa gcacggtcat taaggtccac gacccgtttc
     9901 cagatgatcc tgcgttggtc aatgcctaca gcatttcctt gatggatatg gttgtcaatc
     9961 aaggctgaaa gagcgttgtt agctgtggta atggcatgca tatcgcctgt aaaatgcagg
    10021 ttgatatctt ccatgggcaa gacttgtgca aaaccaccac cagcagctcc gcccttgatt
    10081 cccataacag gccccaaaga aggctcacgg agggcaatca tagttttctt tccaatttta
    10141 gacaaagcat ccgccagacc aatggttact gttgacttac cttcaccagc aggcgttggg
    10201 ttgatagctg tcaccaagat caatttccct ggcgcattgt ctttcaccgc attgatttta
    10261 tcaaaggaca attttgcctt gtattttcca tagagttcaa tatcgtcaaa gctgatacca
    10321 actttttcaa cgatttctgt gattggtttc aaggttacac tttgtgcaat ttcaatatct
    10381 gttttcatga gagctcctaa tttccttatt ttttatggac attataccat accacagctt
    10441 attttcgcat attttttact atttatgcac taacgtacgg aattttcaga aaaactacag
    10501 gtttctttac ttaaacagat acaaattttt aaaacctgca ttctcatcat agctctacac
    10561 ttccatctaa gactgggttt agttagtttt ttcaaaagag agtcagtatt cttttaaaaa
    10621 ttgccttgat gagcaagcaa acgaccgctt gcataaagca cttcacttat atagtctttt
    10681 agtttacttt tagtacgagg caatgagccg caggcataac tgaagttagg caaggcgagt
    10741 taacgaagta ataaaagaaa aactaaatga cgataataca ggcccttata tttttttgta
    10801 ttagcagcat cattttccag tgtcacagat tgattagcaa atcgattagt gcaaacttta
    10861 cgaaaaatag aaattctagt aaaatatgaa catgaaacta ttgattacat caggcggaac
    10921 aagtgaagct atcgatcaag tccgcgctat tacaaaccat gcttctggaa atcttggaaa
    10981 aatcattgcc gaacaagcct tgaaacgcgg tcatgaagtt actcttgtga ctacaagaca
    11041 ggctgttaaa ccagattctc agaagaattt aaccattatc gaaatcacaa atgttgatag
    11101 tttgaaagaa acattagaac ctttagtcaa atcacatcag gccctgattc atagcatggc
    11161 tgtatccgat tatacacctg tttatatgac tggtttagat gaactaagag caactgaaga
    11221 cagttctagt ctactaaaaa aacagaatac agaaagtaag atttcatcca aggatgacta
    11281 ccaagttctt ttcttgaaaa aaactcccaa ggtcatttcc tatgtaaaaa aatggaatcc
    11341 agctatcaca ctctttggct tcaaactatt ggttaatgtt cctaaggagg aattatttgc
    11401 cgtagctcgc caaagcattg aacgaaatgg cgctgattat atacttgcta atgacttgaa
    11461 ggatattgga gaaaatcaac acattgccta tttggttgat aaaacaaggg agattcaagc
    11521 acagacaaaa gatgaaattg ctcagctcat tttaaatacc ctagaaaaag gagaacaaaa
    11581 tggctaatat cacacttgcc gttactggct ctatttcagc ctacaaagca gctgacctaa
    11641 ctagtcaatt gaccaagctc ggtcatcagg ttacagtcct catgagtcgc tctgctatgg
    11701 acttcatcac acctttgact ctccaatcct tgtcaaaaaa tctggttcac acagatgtca
    11761 tgattgaaga aaatcctact cttatcaagc atatcgatat tgccaaagaa acagacgtat
    11821 ttttagttgc ccctgcttct gccaatacga tagctaaatt agctaatggt atggctgaca
    11881 acattattac ggcaacagct ctggctctgc caattggtac taaaaaactg ctggcacctg
    11941 ctatgaatac taacatgtac ctcaatcctg ctacccagaa aaatatcaaa accctcatag
    12001 agtatggttt tgaggaaatc aaaccgcgtg aagccctgct tgcttgtgga gattttggaa
    12061 ctggggcctt ggctgaggta actgatattt tagagaaagt gagtaacacc cttgatgaaa
    12121 aaaaataaat caactcaaat tgctacaatt gcaatcttct ttgctgtcat gattgtcatc
    12181 aatatattga gttcaattat ttttaatata ttgcctgttc caataaaacc caccatcgta
    12241 catatcccag tcattattgc ttctattata tacgggccac gtgttggggc ttgtttgggg
    12301 gctctcatgg gcttaatgag tatgacccat aatactatta tcttactacc aaccagctat
    12361 cttttctccc catttgttga aaatggtaat gtttattcaa tcatcattgc agttgtccca
    12421 cgtatattag tcgggattac accttatttc gtctacaaat ggataaaaaa tcgtaaagga
    12481 ttatttattg ctggtgcaat tggttcaatg accaatacta tttttgtact tggaggtatt
    12541 ttcttcctct tctcctctgt ctttgatggt aatattcaag caatgttagc aaccgtttta
    12601 ggtaccaatt caattgcaga aatgatcatt tcttctgtat taactgcagc gcttgttcca
    12661 actttacaga aaattcaaaa ataaatatca gaaaatcatg tgaaagcgtg atttttcttt
    12721 tcaaacatgg tataatgaaa gcgtttaata gaaaaatttt taaggagata tgcgatgact
    12781 tatcaagaaa cctatcaaac atggctcgac tttgcggacc ttccagatta cttgcgtgaa
    12841 gaattagtcg caatggatga aaaaacaaaa gaagatgcct tctatacaaa tcttgaattt
    12901 ggtacagctg gtatgcgtgg ctatattggc gctggtacca accgcatcaa cgtattcgta
    12961 gtccgtcaag ctactgaagg tttggcaaaa ttggtagaat caaaaggtga agaagctaaa
    13021 aaacgtggtg ttgccatcgc ttacgattca cgtcacttct cgccagaatt tgcttttgaa
    13081 tcagctcaag ttttggcagc gcatggtatc aaatcttatg tatttgaaag ccttcgtcca
    13141 actcctgagt tgtcattcgc tgtgcgccat tacaatgcca tcgcagggat tatggtgact
    13201 gcaagccaca acccgaaaga attcaacggc tacaaggttt acggtgaaga cggcggacaa
    13261 atgccacctg ctgatgcaga tgcattgacc aactttatcc gtgccatcga caatccattt
    13321 gcagttgaat tggctgacct tgaagccagc aaggaaaatg gtttgattac ggttcttggc
    13381 gaagaaactg acgttaaata tcttgaagaa ctcaatgacc tcaacatcaa ccctgaattg
    13441 attgctgaat acggtaaaga catgaagatt gtctatacac cgcttcatgg tacgggtgaa
    13501 atgttggcgc gtcgtgccct tgcacaggct ggttttgaat ctgtccaagt tgttgaagca
    13561 caagcaactg ctgatcctga cttctctact gtcgcttcac caaacccaga gagccaagca
    13621 gcctttgccc ttgcagaaga actcggccgt gaagtcgggg cagatgtcct tcttgcaact
    13681 gaccctgacg ctgaccgtgt tggtgttgaa gttcgtcaag ctgacggttc ttactggaac
    13741 ctgtctggta accaaatcgg cgctatcatt gctaagtaca tccttgaagc ccacaagcaa
    13801 gcaggtacac ttcctgcaaa cgctgccctt gctaagtcaa tcgtatctac tgagttggta
    13861 actaagattg ctgaaagcta tggcgctacc atgttcaacg tcttgactgg tttcaaattc
    13921 atcgctgaga aaatccaaga gttcgaagaa aaacacaacc atacttacat gtttggtttc
    13981 gaagaaagct ttggctattt gattaaacca tttgtacgtg acaaggatgc tatccaggct
    14041 gtgcttatgg ttgctgaaat tgctgcctac taccgttcac gtggcatgac cttagctgac
    14101 ggtatcgatg aaatcttcaa agaatacggc tactttgctg agaaaacaat ctctgttacc
    14161 ctttctggta aggatggtgc agaacaaatc aaggcaatca tggctaagtt ccgtgataac
    14221 tcaccagcac aattcaacgc tactgacatc gcggtctttg aagactttgc ccttcaaact
    14281 aagacagaca aagatggaaa cattgaaaaa ctcactactc ctccatcaga tgtcttgaaa
    14341 tacaccttgg cagatgattc ttggttcgct gttcgtcctt cgggaacaga accaaaaatc
    14401 aaattctaca tcgcaaccgt tggtgaaaca cttgctgaag cagaagaaaa aatctccaac
    14461 atcgaaaaag aaatcaacga atttgttggg taagagtcac ataaattaga aagtacaaac
    14521 cacccgtgaa aacgggtagt ttgtacactg gctataagcc cacatcacca gccagcgcct
    14581 aaagacgctg gctttcactt tgttcaagcc tcactgcttt tgactcgtca ctagcctctt
    14641 aaagaggcat tcgtactact tgccattatc cctaaaggga tcttcatact cttttacact
    14701 caatttatca agtgctatat catgtttaac tcgctttcta gatttaagct cgtgaagaaa
    14761 tcatccactg gataatttct ttgttcttgt atatatttct taattgtggc ttcattaagt
    14821 ccaacttaca ctcttcaaca attccccaaa ttgttgaagc cctctgtcca gaaatgacga
    14881 ttgccaaatt tatatttgag attagcgtgt ttatc
//
LOCUS       DASGCC010000051        14588 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.051, whole genome shotgun sequence.
ACCESSION   DASGCC010000051 DASGCC010000000
VERSION     DASGCC010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14588
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.051"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(19..771)
                     /locus_tag="U1404_001043"
     CDS             complement(19..771)
                     /locus_tag="U1404_001043"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEM5348006.1"
                     /translation="MSRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAP
                     AVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDY
                     FHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTAEQV
                     ASLVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPS
                     NVAEYTACPDVDGALVGGASLEAESFLALLNF"
     gene            complement(946..2142)
                     /gene="tuf"
                     /locus_tag="U1404_001044"
     CDS             complement(946..2142)
                     /gene="tuf"
                     /locus_tag="U1404_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014335040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM5348007.1"
                     /translation="MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSV
                     NQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQM
                     DGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDL
                     LSEYDFPGDDLPVIQGSALKALEGDSKYEDIVMELMNTVDEYIPEPERDTDKPLLLPV
                     EDVFSITGRGTVASGRIDRGTVRVNDEIEIVGLQEEKSKAVVTGVEMFRKQLDEGLAG
                     DNVGVLLRGVQRDEIERGQVISKPGSINPHTKFKGEVYILTKEEGGRHTPFFDNYRPQ
                     FYFRTTDVTGSIKLPEGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGM
                     VTEIEA"
     gene            complement(2498..3469)
                     /locus_tag="U1404_001045"
     CDS             complement(2498..3469)
                     /locus_tag="U1404_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti sigma factor C-terminal domain-containing
                     protein"
                     /protein_id="HEM5348008.1"
                     /translation="MTMKTFEEVTKKSKRKNLWKTIGLSSLIGFILMLIGVQTVKIIV
                     GAREGRENWKQIILMEISYPNIKHDGIKIQSTSYVSGKLYCNLYKDLAGVPMAFGQHE
                     IYYDLFDRHYDFAQHIPGNTFKYLYDFTTNTKVPVFYNRKKSVWSAQDIANELHYLKD
                     MSGQLVEVAISFDKKYSLAEIKQMIPSNLKQNWYWIGTEGKQNTHYYRPEQLLGLDPE
                     DIQLVFSDMPGDYMTGMDFMKEFLESGDQERAQYLDIPVDDLQAFVDKFGGTDFTKQE
                     EIDQLEFAGIILTGKAEDFAQLEGKDWIYSSSIGASIPIQPYYQLHH"
     gene            complement(3450..3953)
                     /locus_tag="U1404_001046"
     CDS             complement(3450..3953)
                     /locus_tag="U1404_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5348009.1"
                     /translation="MSIKLDQYEKEIIGIAEEISYYLQKSGAGPADSQDIAQDVLVKL
                     LESDIVLPFEKLRAWLYRSAVRAYIDKYRRDKRYHEILQKEFFRREDLLVYDQEGYEE
                     LYQAVADLPEKYQQVIDLYYFQDMSVKEVAHILGTGQSWVKIILYRGRKQLRKILEER
                     GYDYEDF"
     gene            complement(4068..6764)
                     /gene="ppc"
                     /locus_tag="U1404_001047"
     CDS             complement(4068..6764)
                     /gene="ppc"
                     /locus_tag="U1404_001047"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEM5348010.1"
                     /translation="MAIQKLENYNNKEAIREEVTILTSILEKVAAQMMPAETFAKIVE
                     LSQLSRQDDYRALIAIISQLNNDELAVISRYFAVLPLLINISEDVDLAYEINHQNNID
                     QDYLGKISTTIDMVSKQENAAEILEKLNVVPVLTAHPTQVQRQSMLDLTKHIHELLRR
                     YRDVKLGLLNKNKWEDELRCYIEIIMQTDMIREKKLKVTNEITNVMEYYNSSFIKAVT
                     KLQREYKRLAAEKGIVLNNPRPITMGMWIGGDRDGNPFVTAETLKLSALTQCEVIMNY
                     YDDQLYKLYRNFSLSTSIVNVSTAVKMLADLSEDSSVYRENEPYRRAFHYIQMKLANT
                     RDYLVHNKPSDVRYSNVAEFKADLLAIKQSLVENKSMALLKGDFTELLEAVEAFGFYL
                     ASIDMRQDSSIHEASVAELLASARIVEDYSSLSEEAKCHVLLKQLETDPRILSATHMP
                     KSEQLEKELAIFAAARELKDKLGEEIIKQHIISHSESVSDLLELAVLLKEVGLVDVDK
                     ARVQIVPLFETIEDLDNAPDTMRQYLQLDLAKRWIAGNKYYQEIMLGYSDSNKDGGYL
                     SSGWTLYKAQNELTQIGQDYGVNITFFHGRGGTVGRGGGPSYDAITSQPFGSIKDRLR
                     LTEQGEVIGNKYGNKDAAYYNLEMLVSATLDRMVTQMITDPNEIDGYRETMDEIVSDS
                     YRIYRDLVFNNPHFYDYFFAASPIREVSSLNIGSRPAARKTITEIGGLRAIPWVFSWS
                     QNRVMLPGWYGVGSSFKRFIDKHPDNLSKLQKMYESWPFFRSLLSNVDMVLSKSNMNI
                     AFEYAKMCESEEVRNIFHVILDEWQLTKEIILSIEQNDELLAELPFLKASLDYRMPYF
                     NVLNYIQIELIHRLRRGELSKEQENLIHITINGVATGLRNSG"
     gene            complement(6785..7999)
                     /locus_tag="U1404_001048"
     CDS             complement(6785..7999)
                     /locus_tag="U1404_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM5348011.1"
                     /translation="MKIDKRQLLNYSILIPYLILSVIGLVMVYSTTSATQIINGGNPF
                     RTVINQAGFWIVSLVAIYTIYRMKLSFLRKKAVIYSVILVEVFLLAISRLFPPINGAH
                     GWIPLPIAGTLQPAEYLKLIIIWYLAHEFAKQQADIRTYDYVSLIKGSWIPKEFTDWR
                     VVSLLLLGLVATLPDLGNATIIVLIMVVMISVSGIAYRWFSTAVLGIVAASTVILGTI
                     RILGVETVEKIPLFGYIARRFAAYFDPFGNATNSGLQLTHSYYAMSNGGWLGRGLGNS
                     IEKKGHLPEAHTDFAFSIVIEELGFVGASLILALLFFLIIRIIIVGVRARSPFNAMMA
                     LGMAGMLLIQTFVNIGGISGIIPATGVTFPFLSQGGSSLLIISIGIGFVLNIDASEKR
                     RLIEEEIERTLI"
     gene            complement(8136..8501)
                     /locus_tag="U1404_001049"
     CDS             complement(8136..8501)
                     /locus_tag="U1404_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4430 domain-containing protein"
                     /protein_id="HEM5348012.1"
                     /translation="MKKISIMLMVVFSLFLAACTNTTEKQSESAIEVTLQITTKDKAN
                     HQEVTAEEGDSVMDVLKEHHDIVEDNGLITEIDGVSQDASTNTYWMYKVNGQMADKGA
                     KDLTVANGDEIEFYLETFE"
     gene            complement(8498..9001)
                     /locus_tag="U1404_001050"
     CDS             complement(8498..9001)
                     /locus_tag="U1404_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348013.1"
                     /translation="MHDKSEKVRRVSQLVVLSSLTIVLRVVFGPFPNIKPLTAIFLIV
                     LSYFSLLESWILMILVMVGSGLLFGFGTVVLWQVLSFAFIQFIWWLAIGPFIKKENIP
                     LWLQSLLAGILVFLYGLTISFLSATQFRTSPIVFWLNGLVFDSLHAASTVLFYPIIDY
                     IFRRFYK"
     gene            9114..9968
                     /locus_tag="U1404_001051"
     CDS             9114..9968
                     /locus_tag="U1404_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HEM5348014.1"
                     /translation="MRKKLNPMIVVGFFLSFFALIFITGVTGNTVNKTEVANEPAVTQ
                     SNTSTSSKTTNSSSSYYIANALEMKPIVDVSAWQRPSEIDYDTLSKNISGAIVRIQSG
                     SHTKNENTATDKNGLDKSFDTHIKEFQARNIPVAVYAYVTGNSIENMREEARSFYKAA
                     NKYKPTFYWLDVEEYTMDDMNAGVEAFRKELETLGAKNIGIYVGTYFMEDHSINVDKF
                     DAIWIPTYGDDSGYYNAAPNTDLNYDLHQYTSRGYVNGFEHHLDLNIITTLKDPNEVY
                     QKLFTTPE"
     regulatory      9992..10087
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            10146..10694
                     /gene="thiT"
                     /locus_tag="U1404_001052"
     CDS             10146..10694
                     /gene="thiT"
                     /locus_tag="U1404_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HEM5348015.1"
                     /translation="MSTSKLPILAEVAIFSAIALVFDKIPLFTMPQGGSVSLVMLPIL
                     LLALRHGLGVGVLTGGIVGTIQLFYGGYFLNVFQVFLDYALSYAGIGLAGLVAPTLSK
                     QKDLKNATLIITLASFLGGSIRLLATFLSGIIFYADYAPDGMPVWFYSFTYNISYILP
                     STAIASILLILLYRARPGFYNL"
     gene            10797..11639
                     /locus_tag="U1404_001053"
     CDS             10797..11639
                     /locus_tag="U1404_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HEM5348016.1"
                     /translation="MASWISRIIKGMIIALGFILPGVSGGVLAAILGIYERLIGFLAN
                     IRKDFKENFLYFVPVGIGGILGIALFSFPVEFLLQHFQVPVLWAFAGAIVGTIPSLLK
                     ESTQKSKRDSIDLAWLIGTFIISGLLLYNLSDLVGTLPATFASFVLAGALIALGVLVP
                     GLSPSNLLLILGIYTPMLNGFKSLDLFGTFLPIAIGGVLAMVAFSKAMDHALKVYHSR
                     VYHFIIGIVSSSTLLILIPQASNKESISYAGANFVTWIAAIVLFILGAWLGLWMSKLE
                     EKYK"
     gene            11639..12121
                     /locus_tag="U1404_001054"
     CDS             11639..12121
                     /locus_tag="U1404_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA deacylase"
                     /protein_id="HEM5348017.1"
                     /translation="MAKKVKIKKTLVDQILDKAKINHDSLVLNAFEGQLPPGIEEHEI
                     YKTLALTGDKTGPIIGIVPITEHLSEKKLAKISGNKKVSMIPQKDLEKTTGYIHGANN
                     PVGIRQKHNFPIYIDQSALELGHLIVSAGEIGRSIRIDSQVLADFVKADFADLIEGRD
                     "
     gene            12124..12750
                     /locus_tag="U1404_001055"
     CDS             12124..12750
                     /locus_tag="U1404_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5348018.1"
                     /translation="MKIYFVRHGKTEWNLEGRFQGYSGDSALLPESYQDLEKLGKYLA
                     EIPFDAIYSSDLQRAHSTAVEIAKANHHCQTVLTTQQLREWNFGTLEGSKMAIFRAIY
                     PKQAWALKHNLALFNNDLFEAESVRQVTQRMVDFVQSLKGQDMETVLIVSHGAFLTAS
                     IHRLLGFPPAQLRHRGGLDNASVTILETSDFENFTELAWNDTSYKAKQ"
     gene            12853..14343
                     /gene="lysS"
                     /locus_tag="U1404_001056"
     CDS             12853..14343
                     /gene="lysS"
                     /locus_tag="U1404_001056"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003055423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEM5348019.1"
                     /translation="MSTEHFEELNDQQIVRREKMTALAEQGIDPFGKRFERSANSAEL
                     KAQYEDKSKEDLEELGQTAIIAGRIMTKRGKGKAGFAHIQDREGQIQIYVRKDDVGEE
                     NYEIFKKADLGDFIGVEGDVFKTNVGELSIHARKLTHLSKALRPLPEKFHGLTDIETR
                     YRKRYLDLITNRESFDRFVTRSKIISEIRRYLDGLGFLEVETPVLHNEAGGAAARPFI
                     THHNAQNIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQ
                     AYADYLDIMDLTEGIIQHTAKAVVGDGPVTYQGTEIAIHEPFKRIHMVDAIKEQTGVD
                     FWQEMSFEEAKALAAEHKVPVEKHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVS
                     PLAKKNDEDPRFTDRFELFIMTKEYGNAFTELNDPIDQLERFEAQAKAKELGDDEATG
                     VDYDYIEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK"
BASE COUNT         4354 a         3178 c         2735 g         4321 t
ORIGIN      
        1 atccgatgct ttttgttatt agaagttcaa caaagccaag aagctttctg cttcaagtga
       61 tgcaccacca acaagcgcac cgtcaacgtc tggacatgcc gtgtattcag caacgtttga
      121 tgggtttaca gaaccaccgt attgaacgcg aactttgtct gcaacttctt gaccgaaatc
      181 agcagcaaca acgtcacgga cagctttaca catgttttgt gcatcatctt tagtagctga
      241 tttacctgta ccgattgccc agattggctc ataagcaata acaagtgatg ctacttgttc
      301 agcagtcaag tctttcaaag ctgcagaaac ttgtgcacct acaaattcta ctgctttacc
      361 agcttcgtaa gtttcaagtg actcaccaca acagatgatt ggagtcaaac cgttacggaa
      421 gattgcatga gcttttttat taatatcttc atcagtttcg tggaagtaat cacgacgctc
      481 tgagtgaccg ataacaacat agttaacacc catttcagcc aatacttttg gagatgtttc
      541 accagtgaag gcaccagcat cttcaaagta gcagttttga gcagcaactt tcaattcaga
      601 atctttagcg aaccacaaga gagcgttcaa atctacagct ggagctgcga tagctgcttc
      661 aattttgtcg cctgcaggca attttcctgc aattgcctca acgaaagctt gtgcttcttg
      721 agggttttta ttcattttcc agttaccggc aatgattggt ttacgtgaca tttcacttac
      781 ctcttctata tttattgtac aaggtacatt atagcataaa cttagctaag attaaagaat
      841 ttctgtgcat tttatgaata cttacagaaa aactctctac ccgaaagtag agagttacaa
      901 ttaagttgtc tgactataat tgttatttct gggaactcaa tcgaattaag cttcgatttc
      961 tgtaaccata cctgaaccaa cagtacgtcc accttcacgg atagagaaag tagtaccttg
     1021 ttcaacggcg attgggtgga tcaattcaac gtcgatagta acgttatcac caggcattac
     1081 catttcagta ccttctggca atttgattga accagttacg tcagttgtac ggaagtagaa
     1141 ctgtggacgg tagttgtcga agaatggagt gtgacgtcca ccttcttctt tagtaaggat
     1201 gtaaacttca cctttgaatt tagtgtgtgg gttgatagaa cctggtttag agataacttg
     1261 accacgttcg atttcatcac gttgtacacc acgaagaagc acaccaacgt tatcgccggc
     1321 aagaccttcg tcaagttgtt tacggaacat ttcaacacca gtaacaactg ctttagattt
     1381 ttcttcttga agaccaacga tttcgatttc gtcgttgaca cgaacagtac cacggtcgat
     1441 acgtcctgaa gctacagtac cacgaccagt gattgagaat acgtcctcga ctggaagcaa
     1501 caatggtttg tcagtgtcgc gttctggttc tggaatgtac tcatcaacag tgttcatcaa
     1561 ttccataacg atgtcttcgt acttagagtc accttcaaga gctttaagag ctgaaccttg
     1621 gataactgga agatcatcac ctgggaaatc gtattctgaa agaaggtcac ggatttccat
     1681 ttcaaccaac tcaagcaatt cttcatcgtc aaccaagtca actttgttca tgaagacgat
     1741 aaggtgttta acaccaacct gacgtgaaag aaggatgtgc tcacgagttt gtggcattgg
     1801 accgtcagtt gaagctacta caaggatcgc accgtccatc tgagcagcac cagtgatcat
     1861 gtttttaacg tagtccgcgt gtcctggagc gtcgatgtga gcatagtgac gtttttcagt
     1921 ttcgtactca acgtgtgcag tgttgatagt gataccgcgc tcgcgctctt ctggagcagc
     1981 atcgatagac gcatagtctt taggttggtt aactgatgaa ggcaagcgac gtgccaatac
     2041 agttgtgata gctgctgtca aagtagtttt accgtggtca acgtgtccaa ttgtaccaat
     2101 gttaacgtgt ggtttactac gatcgtattt ttcttttgcc attttggtaa aagcctccaa
     2161 taaaatatat tttatagata gacagtaggc aatacagtct aactttacct tactattcta
     2221 tcaaattgta gcagaattgc aagcattttc tatcgttttt tattttatcc attttctgca
     2281 agggctatta gcttcgctta taactttttt tatcatccca ttttaaccta ttactcaact
     2341 aaaaacacct cactgccata ggaatattga tgttaccata gctacaaggt gccacaaata
     2401 cgagactact gcgacagacc tttctccatt cagtcatcct acgactccct gacaagcctc
     2461 ttgctatagg tattgaaaat atattgacta ttttcactta atgatgcagt tgataataag
     2521 gctgaatagg aatggacgcg ccaatactag aagaataaat ccagtccttg ccttccaact
     2581 gagcaaagtc ttctgctttt cctgttagga taatgcctgc gaactccaac tgatcaatct
     2641 cttcttgttt ggtaaagtca gtgccaccaa acttatcgac aaaggcctgc aagtcatcca
     2701 caggtatgtc cagatactgt gctcgctcct gatctcccga ttctaagaac tctttcataa
     2761 agtccatacc tgtcatatag tctccaggca tatccgaaaa gactagttga atatcctctg
     2821 gatctaaccc caaaagctgc tctggacgat agtaatgggt attctgcttc ccttctgtcc
     2881 ctatccaata ccaattttgc ttgagattgc tgggaatcat ttgcttgatt tctgccaaac
     2941 tgtacttctt atcaaaggaa atagccactt ctactagctg cccactcatg tctttaagat
     3001 aatgcaattc attggcaatg tcttgagcac tccaaacaga cttttttcta ttgtaaaaaa
     3061 caggtacctt ggtattggtt gtgaaatcat atagatattt gaaggtattc ccaggtatat
     3121 gctgagcaaa atcatagtga cgatcaaaca ggtcatagta aatttcgtgc tgaccaaaag
     3181 ccataggaac accagctaga tccttatata aattgcagta aagtttccca gaaacataac
     3241 tcgtgctttg gattttaata ccgtcatgtt ttatatttgg ataagagatt tccatcaaaa
     3301 taatttgttt ccaattctca cgaccttctc gtgcaccgac gatgattttt actgtttgaa
     3361 cgccaataag cattaagatg aagccgatga gcgatgatag ccctattgtc ttccataaat
     3421 ttttccgctt actctttttt gtcacctctt caaaagtctt catagtcata tcctctctct
     3481 tctagtattt tcctcaactg cttgcgtccg cggtaaagga taattttcac ccaactttga
     3541 ccagtcccta agatatgggc aacttctttg acactcatat cttgaaaata atagaggtca
     3601 atcacttgct ggtatttttc tggcaggtct gcaactgctt gatagagttc ctcataacct
     3661 tcttggtcat agaccaaaag gtcttctctt ctaaaaaact ccttttgtaa aatttcatgg
     3721 tagcgcttgt ctcgcctgta tttgtcaatg taagcccgaa ctgcagatcg gtaaagccaa
     3781 gctcttagtt tttcgaaagg aaggacaata tcagattcaa gcaatttgac tagaacatct
     3841 tgggcaatat cctgactgtc agctgggccg gctcctgatt tttgcaaata gtaggaaatc
     3901 tcctctgcaa taccaataat ttctttttca tattgatcta gtttgatact tatctcctcc
     3961 tttcactgat aaaacgaata aggggtgatt tggttacgtt ttcttataat tattatatat
     4021 ttttagaata gaaaaaaaca acctccgaag aagttgtttt atgcctatta acctgagttg
     4081 cgcaaacctg tcgccacacc attgatggta atatgaatga gattctcttg ttctttgctc
     4141 aattctccac gacgaagacg atgaattaat tcaatctgaa tatagttgag cacattgaaa
     4201 taaggcatgc gatagtcaag actagctttt agaaacggta gttctgctaa aagctcatca
     4261 ttttgctcga ttgacaaaat aatttctttg gtcaactgcc attcatctaa aatgacatgg
     4321 aagatatttc gtacctcttc gctttcacac attttagcat attcaaatgc gatattcata
     4381 ttggatttag acaataccat atccacgttt gatagaagtg aacggaagaa tggccaagat
     4441 tcgtacattt tttgtaactt agacaaatta tcagggtgct tatcaataaa gcgtttgaaa
     4501 cttgaaccaa ctccatacca acctggcaac atgacacggt tttgtgacca agagaatacc
     4561 catggaatcg cacgcaaacc accgatttct gtgatggttt ttcgagccgc tggacgtgag
     4621 ccaatgttca gacttgatac ttcacgaatt ggactagcgg caaagaaata atcataaaaa
     4681 tgtggattat tgaacacaag atctctataa atacgatagc tatctgatac aatttcatcc
     4741 atggtttcgc gatagccatc gatttcattt ggatcggtaa tcatttgtgt gaccatacgg
     4801 tcaagcgttg cagataccag catttctaaa ttatagtagg ctgcgtcttt gttaccgtat
     4861 ttattaccta tcacttcgcc ttgttctgtc aaacgaagcc ggtccttgat ggaaccaaat
     4921 ggctgagatg taatcgcatc ataggaagga cccccaccac gaccaacagt accaccacga
     4981 ccgtggaaga aggtgatgtt tactccgtag tcttgaccaa tttgcgtcaa ttcattctgt
     5041 gctttgtaga gtgtccagcc ggaggatagg tagccaccat ccttgttgga atctgagtag
     5101 ccaagcatga tttcttggta gtatttattg cctgcaatcc aacgtttcgc taaatctaat
     5161 tgcagatatt gacgcatggt atcaggtgca ttatctaagt cctcgattgt ctcaaaaagt
     5221 ggaacaatct gaacacgggc cttatcgaca tctactagac caacttcttt taataggaca
     5281 gctaattcca gcaaatcaga aacactctcc gagtgtgaaa taatatgttg cttgatgatt
     5341 tcctcaccta gcttatcttt caattcacgc gcagcagcaa agatggccaa ttctttttct
     5401 aattgttctg actttggcat gtgcgttgca gaaagaatgc gtggatcagt ttccaactgt
     5461 ttcaaaagaa catggcattt agcttcctca gataaactgg agtagtcttc tacgatacgg
     5521 gcagaggcca atagctccgc aacacttgct tcatgaatag aagagtcttg gcgcatatcg
     5581 atactagcta ggtagaaacc aaacgcttca accgcttcaa gcaattctgt aaaatcacct
     5641 ttcaatagcg ccatagattt attttcaacc aaagattgtt tgatggctaa taagtcagct
     5701 ttaaactcgg ctacattact atagcgaaca tctgacggct tattgtgaac tagataatct
     5761 cttgtatttg caagtttcat ctgaatatag tgaaaagcac gacgataagg ctcattttca
     5821 cggtagacag aactatcttc agataaatcc gccagcatct taaccgctgt agatacattt
     5881 acaatggaag ttgagagtga aaaattccga tagagtttat agagttgatc atcgtaataa
     5941 ttcataatga cttcacactg agtcaaggcg gacagcttca aggtctctgc agtaacaaat
     6001 ggatttccat cacggtctcc cccaatccac atacccattg taattggacg aggattattt
     6061 aagacgattc ctttctcagc ggccaaacgt ttgtattccc gctgcaactt agtgacagcc
     6121 ttaataaagg aagaattata atactccata acgtttgtga tttcgttggt taccttcaac
     6181 ttcttctcac gaatcatatc cgtctgcatg ataatttcaa tgtaacaacg gagctcatct
     6241 tcccatttgt ttttattgag caagcccaat tttacatcgc gataacgacg aagcaactca
     6301 tgaatatgct tggttaaatc cagcatagac tggcgttgaa cctgagtagg atgggctgtc
     6361 aagactggaa caacattcaa cttttcaagg atttcagctg cattttcttg tttggaaacc
     6421 atatcaattg ttgttgaaat cttaccaaga taatcttgat caatattgtt ttgatggttg
     6481 atttcatagg ccaaatcaac atcttctgat atattaatca aaagtggcaa aacagcaaag
     6541 tatcgagaaa taactgctag ttcatcatta ttcaactgac tgataatagc aatcaatgcc
     6601 cgataatcat cctgacgaga caattgagat aattctacaa ttttagcaaa ggtctctgca
     6661 ggcatcattt gggctgctac tttttccaaa atagatgtta gaatcgttac ttcttcacgg
     6721 attgcttcct tgttgttata gttttctaat ttttgaatag ccatctccta cctctttcct
     6781 atctctaaat tagcgtacgc tctatttctt cttcaattaa tcgacgtttt tcactagcat
     6841 caatattcag aacaaaccct atcccgatgg aaataatcaa aagactcgat ccaccctgtg
     6901 acaagaaggg gaaagttacc cccgttgcag gaataattcc tgaaattcct ccgatattga
     6961 caaatgtttg aattagaagc atacctgcca ttccaagtgc catcatcgca ttaaatggac
     7021 tacgagcacg gacgcctaca ataataattc gaataatcaa aaagaacaat aaggctagaa
     7081 ttaaactagc tccgacaaaa ccgagttctt caatgacaat cgaaaacgca aagtcggtgt
     7141 gggcctctgg tagatgcccc tttttctcaa tcgaatttcc caagccacgt ccaagccatc
     7201 caccgttact catcgcatag taagaatgag tcaattgaag acctgagttg gtggcattac
     7261 caaatggatc aaaataggcc gcgaaacgac gagcaatata accaaagagt ggaatttttt
     7321 ccaccgtttc tacacccaaa atacgaatcg tccctagaat aactgttgag gcggccacaa
     7381 ttcccaaaac cgctgttgaa aaccagcgat aggcaatccc actcacacta atcatcacga
     7441 ccataatcag cacaataatc gtcgcatttc ccaagtctgg cagtgtcgca actagaccaa
     7501 ggaggagcag actgaccacc cgccaatctg taaactcttt cggaatccaa cttcctttaa
     7561 tcaacgatac atagtcataa gtccgaatat ccgcctgttg ttttgcaaac tcatgtgcca
     7621 gataccaaat gataattaat ttcaaatatt ctgccggctg caaggttcct gcgattggca
     7681 gaggaatcca gccatgagct ccgttaatcg gaggaaacaa ccgagaaata gctaacagaa
     7741 atacttctac caaaataacc gaatagataa cggctttctt gcgtaaaaaa cttaatttca
     7801 tacgataaat cgtatagatt gctaccaagc tgacaatcca gaatcctgcc tggttaatca
     7861 ctgttctaaa tggatttcca ccattaataa tttgcgtagc actggttgtc gaatagacca
     7921 tgaccaaccc aatcaccgat aagatgagat agggaatcag tatggaataa ttcaacaact
     7981 ggcgtttgtc aatcttcatt gcttatccaa ccttcttcga gtatagctct tattatagca
     8041 tactttgtat aaaaatactt atcactttct aagttgctct gcaaacattc ggaactgact
     8101 tttgtcgaca agaaaaaggc cgaagccttt catatctatt caaatgtttc aagataaaat
     8161 tcaatttcat ccccattcgc aactgtaagg tctttcgccc ctttatcagc catttggcca
     8221 ttaactttat acatccagta tgtattggta ctcgcatctt ggctaacacc atcaatttcc
     8281 gttatcaaac cattgtcttc tacaatgtca tgatgttctt taagcacatc catgacacta
     8341 tcaccttctt ccgcagtgac ttcctgatga ttcgctttgt ccttggttgt aatctgcaaa
     8401 gtgacttcga tagccgattc actctgtttc tcagtagtgt ttgtacaagc agccaagaag
     8461 agcgagaaga caaccatcaa cataatacta atttttttca tttataaaat ctcctaaaaa
     8521 tataatcaat aattggataa aacaaaactg ttgaagcagc gtgtaaacta tcaaagacta
     8581 gaccattaag ccagaagacg ataggggaag tcctaaactg tgtagcagat aaaaaactta
     8641 tcgttagccc atacaaaaag acaagaatcc ccgccagaag actctgtagc cacaagggaa
     8701 tgttctcttt tttgataaaa ggaccgattg ccaaccacca tataaattgg ataaaagcaa
     8761 aactaagaac ttgccacaaa acaactgtgc caaatccaaa tagcaagcca ctccctacca
     8821 tcactagtat catcaatatc cagctctcca gcaaactgaa ataggacaga acaatgagga
     8881 aaatagccgt gagaggtttt atattgggaa atggcccaaa aaccaccctt aaaacaatcg
     8941 tcaaagagga tagaacaact agctgactaa cacgtcttac tttttcactt ttgtcatgca
     9001 taccaattta gcctacctta ttccctttat tatgtcaagt tcagataatc ttttactatt
     9061 tcttgaatcg tatttttttg attttttcat gattttacgg tagaattgag gagatgagaa
     9121 agaaactaaa tccgatgatt gttgttggtt ttttcctatc cttctttgct cttattttca
     9181 tcactggggt gactggaaat actgtaaata agacggaggt agctaacgaa cccgcagtca
     9241 cacaatcaaa caccagtaca agttctaaaa caacaaattc tagctcaagt tattacattg
     9301 caaatgcgct cgaaatgaaa cctatcgtcg acgtttctgc ttggcagaga ccgtctgaaa
     9361 ttgactacga tacccttagc aaaaacattt ctggcgcaat cgttcgtatt caaagtggat
     9421 cacacactaa aaacgaaaat actgcgactg ataaaaatgg gttagataaa tcctttgata
     9481 cccatattaa agaattccaa gcaagaaata tacctgttgc tgtctatgcc tatgtcacgg
     9541 gaaatagtat tgagaacatg cgagaggaag ctcgaagctt ttataaggcc gcaaataaat
     9601 acaagccaac cttctattgg ttagacgttg aagaatatac catggatgat atgaatgctg
     9661 gagtggaggc ttttcgaaaa gagttagaaa ctctcggcgc taaaaacatt ggaatttacg
     9721 tcggaaccta tttcatggaa gaccacagca tcaatgtgga taaatttgac gccatttgga
     9781 ttcctacata cggtgatgat tctggctact acaatgccgc tccaaatact gacttgaact
     9841 acgatcttca ccaatatacc tcacgtggtt atgtaaacgg ctttgagcac cacctagatc
     9901 tcaacattat tactaccctg aaggatccta atgaagttta tcagaaacta tttacaacac
     9961 ccgaataaaa tgctacaatc tcactaatta catatacaca aaggagtgct tcggctgaga
    10021 tcgcaactgc gaaatcctcg aacctgatct agttaaaact agcgtaggaa ttgtgtgctt
    10081 tatagaatga tactatactc tgctataaac actcctttgt tgaccatcta caaaggagtc
    10141 tttttatgtc cacatcaaaa ttacccatcc tagccgaagt cgctatcttt tctgcaattg
    10201 ccctcgtctt tgacaaaatc ccgctcttta caatgcccca aggtggatct gtgtctttag
    10261 tcatgcttcc aatcttactg cttgctctgc gccacggact aggggtgggg gttcttactg
    10321 gtggtattgt cggaaccatt caacttttct acggtggcta cttcctaaac gtttttcaag
    10381 tttttcttga ctacgcactt tcttacgccg gaattggttt agcaggttta gtggcaccca
    10441 ccctatccaa acaaaaagat cttaaaaatg ctactctcat cattactctg gctagttttc
    10501 taggaggaag catccgattg ttagccacct tcttatcagg aattattttc tacgcagact
    10561 acgctccaga tggtatgcct gtctggttct attcctttac ctacaatatc agctatattc
    10621 ttccttccac tgcaattgcc tctattctgc tcattttact ctatagagca agaccaggtt
    10681 tttacaatct ttaaccaaaa ctgcctgctg gattttatct aacaggcagt ctttttaatt
    10741 atttttactt gctttatgct ataataggaa cgttataata cattttggag gaaattatgg
    10801 cttcttggat ttcaagaatt attaaaggta tgattatcgc actcggcttt atcttacctg
    10861 gtgtctctgg gggggtactc gctgctatcc tcggaatcta tgagcgacta attggatttt
    10921 tagcaaatat tcgaaaagat ttcaaggaaa actttcttta ttttgttcct gtaggaattg
    10981 gtggaatttt gggaatcgca cttttctctt tccctgtaga atttttattg caacatttcc
    11041 aagtcccagt tttgtgggca tttgcgggag caatcgtggg aactattcct agcctactta
    11101 aagaatcaac tcaaaagagc aaacgagata gcattgattt ggcttggttg attgggacat
    11161 tcattatttc tggcctccta ctttacaatt tgagcgatct tgtcgggaca cttccagcta
    11221 cttttgctag ttttgtattg gcaggtgcct tgatcgcttt aggggtactt gttcctggac
    11281 tcagcccttc aaacttacta ttgattttgg gtatctacac gccaatgcta aatggtttca
    11341 aatcacttga tctattcggt accttcctac caatcgcaat cggtggtgtt cttgcaatgg
    11401 ttgcattttc aaaagcaatg gaccacgctc tgaaagtata ccattcacgt gtttatcact
    11461 ttattattgg tatcgtttca tcttctactc tcctaatttt gattccacaa gcaagtaata
    11521 aagagtcaat ttcctatgct ggagcgaact ttgttacatg gattgctgct attgtcctat
    11581 ttatactagg agcatggtta gggctttgga tgagtaaact tgaggaaaaa tataaataat
    11641 ggcaaaaaag gttaaaataa agaaaacctt ggtggaccaa atattggaca aggctaagat
    11701 caatcatgat agccttgttt taaatgcctt cgaaggtcaa cttccaccag gaattgaaga
    11761 acacgaaatt tacaaaacac tggcattaac tggagataaa actggaccaa ttatcggcat
    11821 tgtcccaatc acagaacacc tgtctgagaa aaaattagcc aagatctctg gcaataaaaa
    11881 agtgagtatg attccgcaaa aggacttgga aaagacaact ggctacatcc atggtgccaa
    11941 caatcccgta ggcattcgtc agaagcataa tttcccaatc tacattgatc aatctgccct
    12001 tgaactcggt cacttgattg tctctgctgg agaaattggt cggtcgattc gaattgacag
    12061 tcaggtatta gctgattttg taaaagctga ctttgccgat ttgatcgagg ggagggacta
    12121 gacttgaaaa tctactttgt ccgtcacggt aagaccgaat ggaatttgga gggacgcttt
    12181 caaggctatt ctggagattc agctctcttg cctgaatctt atcaggattt agaaaaacta
    12241 ggcaaatacc ttgctgaaat cccctttgat gctatttatt ctagtgattt gcagcgcgca
    12301 catagcactg ccgtagaaat tgccaaagcc aatcaccatt gccaaaccgt tctaaccacg
    12361 caacaattac gtgaatggaa ttttggaacg ctggaaggaa gcaagatggc aatttttcgt
    12421 gccatctatc ccaaacaagc ctgggcactc aaacataatc tagcactttt taacaatgac
    12481 ttatttgaag ctgagagcgt tcgccaggta actcaacgaa tggtggactt tgtccaatcg
    12541 ctgaaagggc aagacatgga aacagtcctc atcgtcagcc atggtgcttt tctaaccgct
    12601 tctatccatc gcctacttgg ttttccacca gcccaactgc gtcaccgagg tggtttggat
    12661 aatgcatcgg ttactatttt agaaacaagc gatttcgaaa actttacaga attagcttgg
    12721 aatgatacca gctataaagc aaaacagtag aattttctgc tgttttttcc tatcctatta
    12781 gcaatttata ctgatttttt ctctcttcta tgataaaata gaaataacag actttggagg
    12841 aataaaattt ttatgtcaac tgaacatttt gaagaattaa atgaccaaca gattgtccgt
    12901 cgtgagaaaa tgacggctct tgctgaacaa ggcattgacc catttggaaa acgttttgag
    12961 cgttctgcca attcagctga attgaaggcc cagtacgaag ataaatcgaa agaagactta
    13021 gaagaattgg gacaaacagc aatcattgca ggtcgtatta tgaccaagcg tggtaagggt
    13081 aaggcaggtt tcgcgcacat tcaagaccgc gaaggccaga ttcaaatcta cgttcgtaag
    13141 gatgatgttg gcgaagaaaa ctatgaaatc ttcaaaaaag cagaccttgg tgactttatc
    13201 ggtgtcgagg gagatgtctt caagacaaac gttggtgagt tgtctatcca tgctcgcaag
    13261 ttgactcact tgtctaaagc gctccgccca ttgccagaaa aattccacgg tttgacagac
    13321 atcgagaccc gctaccgcaa acgttatttg gacttgatta ctaaccgcga gagctttgat
    13381 cgctttgtga cccgctcaaa aattatctca gaaatccgcc gttaccttga cggacttggt
    13441 ttcttggaag tggaaacacc tgtccttcac aatgaagctg gtggtgctgc agctcgtcca
    13501 ttcatcaccc accacaatgc ccaaaacatt gacatggtcc ttcgtatcgc gacagaactc
    13561 cacctcaaac gcttgattgt cggtggtatg gaacgcgttt atgaaatcgg acgtatcttc
    13621 cgtaacgagg gtatggatgc gactcacaac cctgagttca cgtcaatcga ggtctaccaa
    13681 gcttatgcag attacttgga catcatggac ttgaccgaag gtattataca gcacactgcc
    13741 aaggctgttg tcggcgatgg tcctgttact tatcaaggca ctgaaattgc tatccacgag
    13801 ccattcaagc gtatccacat ggttgatgcc attaaggaac aaactggcgt ggacttctgg
    13861 caagagatga gcttcgagga agcaaaagcc cttgcagctg agcacaaggt ccctgtggaa
    13921 aaacaccata cagaagttgg tcaaatcatc aacagcttct ttgaagaata cgttgaagca
    13981 actcttatcc aaccaacctt cgtctatggt cacccagtag ccgtatcccc actggctaag
    14041 aaaaacgatg aagacccacg cttcacagat cgcttcgagc tcttcatcat gaccaaggaa
    14101 tacggaaatg cctttacaga attgaacgac ccaatcgacc aattggaacg cttcgaagcc
    14161 caagccaaag ctaaagaact cggtgacgac gaagcgacag gcgttgacta cgactacatc
    14221 gaagccctcg aatacggtat gccaccaaca ggtggacttg gaatcggtat cgaccgcctc
    14281 tgcatgctct taacagacac aacaactatt cgggatgtac tcctatttcc gactatgaag
    14341 taagtaagag tagcttgcta ggattgtttt cactagaatg taccaatcgc tctccagttt
    14401 cttagcgatt ggctgaaaag gtctactaga ccttttcact cccgacgatg aaataaaaat
    14461 tacaaactgt ttaacaccgt tacttaaaac actcttggaa attccaagag tgtttttgca
    14521 tgcaaaaaaa tcccaaccac atagtcagga ttttcaggag attatgaaaa atatttagga
    14581 ttaactat
//
LOCUS       DASGCC010000052        14389 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.052, whole genome shotgun sequence.
ACCESSION   DASGCC010000052 DASGCC010000000
VERSION     DASGCC010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14389
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.052"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(19..1353)
                     /locus_tag="U1404_001057"
     CDS             complement(19..1353)
                     /locus_tag="U1404_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEM5348020.1"
                     /translation="MLELFKAINNLVWGPPLLLLLVGTGVYFTLRLGIFQISKLPTAF
                     RLIFSSDQSGQGDVSSFAALCTALAATVGTGNIVGVATAITTGGPGALFWMWVAAFFG
                     MATKYAEGFLAIKYRTKDANGQAAGGPMHYITLGMGQKWKPLAVFFAISGVLVALLGI
                     GTFSQVNSITASLETSFGLEPPLVSVITAISIVFVVFGGIEKISDVSTKIVPFMAILY
                     ILASITVLAVHWDQLLPTLALVFKSAFTPAAAVGGFAGATVQQAIQRGIARGVFSNES
                     GLGSAPIAAAAAKSDNPVEQGLISMTGTFIDTLIICTLTGFTILVTDQWSVEGLAGAP
                     LTQAAFSTVFGQPGVLALTISLVLFAYTTILGWSYYGERCIEFLFGTKAILPYRLVFV
                     AMVALGGFLKLDLIWTIADIVNGLMALPNLIALLALSPVIIKETRQYFAKKK"
     regulatory      complement(1460..1564)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(1827..2459)
                     /locus_tag="U1404_001058"
     CDS             complement(1827..2459)
                     /locus_tag="U1404_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348021.1"
                     /translation="MFSIQSIQKKFGKRSLFSDVTLDLQAGKVYALIGASGSGKTTLL
                     NILAKLESYDAGDILYKGKDLKKLKPHLFFREELGYLFQNFGLLESQTIRENLDLGLI
                     GQKLSKDERKLRQEAALDAVGLSYLDLSQPIYELSGGEAQRVALAKVILKNPPLILAD
                     EPTAALDPKSSQEIMDILLSLKSPDRLIVIATHNPLIWERADLIIKMEDL"
     gene            complement(2461..4443)
                     /locus_tag="U1404_001059"
     CDS             complement(2461..4443)
                     /locus_tag="U1404_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM5348022.1"
                     /translation="MKGKFVLVSTIILAVFMIWLGVSQKETMLVHYYPSVTSLSVSED
                     VTYSDVRQRLEEYSQQTDSVIARRVIEPSTSGGRTFSYDNFSQSSLPRGLEEFQASEK
                     VESALLTKYFIFQGKATVEELRSLLVSLGFDEVQIRKPSTIATLLAFLTQGGQFLAVL
                     VFLITYMALVVVANVRQLRTAGIRLIAGDSRWHLFLLSLQENAKEIALTIPFAVLPAV
                     GLAYLIGLDGYSVYYLVAALVGYHFLLGLIALFFAATFTLAIRIYHFLPLLKGKMPLQ
                     GILTIMVMGQMLALLVVSLGMAQTVYYSGIWQEYQAGARQWEKEEDYYSLAWNIAADG
                     HSGLNSPENWYPLLKQALEKDGALFVKSNLNAYLMGSQLEDGTSLDSYHPAGNTLYVS
                     PNYLQIQDVDLSDEALPSLQEGEFQLLLPEKLRPESDIYLHLYQDYINRMVRPANQAS
                     SATIKGKLAYLKDGQKQFIYNHRSSQHVQYLTDPILVVLAPSSLGKESADFWLNEVDS
                     SILFKNRDKLLRELKARNLFQFVNEVRSSSSLFTELLDRIRIETISTSMGAILGIVTS
                     IILFNTMNLLYFEEFKRDIFIKEIAGMDFLGIHKKYLTFQLLSLLLALGASMVVTGHM
                     FISSISFALFMVNALCLLRWQARKDGTWNIRILKGA"
     gene            complement(4463..5948)
                     /locus_tag="U1404_001060"
                     /pseudo
     CDS             complement(4463..5948)
                     /locus_tag="U1404_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774933.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
     gene            complement(6323..6616)
                     /locus_tag="U1404_001061"
     CDS             complement(6323..6616)
                     /locus_tag="U1404_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348023.1"
                     /translation="MDLNDYYTDIDPDFSFRELRRKIERYRIVMQARVLLDKRDTIKR
                     TGKTDIQKIASETKQTIQTMRGRLETSIKGSVRTGIEEAVDKHSSLYDTITQS"
     gene            complement(6603..6992)
                     /locus_tag="U1404_001062"
     CDS             complement(6603..6992)
                     /locus_tag="U1404_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348024.1"
                     /translation="MESDVIWERIRKREQELFDLEDDYNQEKNKIEARQEDLEQRQNA
                     LKLLIEREQEEMRCFLSRHSLDYDAALSFFQELDQLQEESFYQYRQEMDQLFQQEERL
                     SQQYRTDLYRLEDTISQLRRDYSNGLE"
     gene            complement(6977..8191)
                     /locus_tag="U1404_001063"
     CDS             complement(6977..8191)
                     /locus_tag="U1404_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEM5348025.1"
                     /translation="MISDKDYRDISKVVYDVDLLKAPKTPLIQDTPVVNGSFIIIEPP
                     VDAGNGMQAMAVAPIKGYDTDNKPIPDTSQVVIAYAGTNDGDIKDWATDISMIGGGNT
                     ATFTVPGQNVPYISQSITAVAFADQIVQRYPDATITITGHSLGGSLAMYVALKKDLPA
                     ITFNGPDIHNMISEDEIEYMQQHRAQFRNYRNKYDFLGDITGNKTKSAIYPAVKNIPG
                     DAIADHMLNAWKFNKYGQLIDANGQVVSTFTGAPLEDTRLAMKRWKKQKTALSKGGLS
                     RSEEIFLDSEQARTISAGIASVADAGQMSIFAHCDDYVHQAEELWNSIDFHSYSALSY
                     WEVCALFSEYGVSQETIVREIEETMDIYRQRAEIATEKFTILDTQIIQAINTMLETDK
                     RLAGDFEKWNQM"
     gene            complement(8188..8589)
                     /locus_tag="U1404_001064"
     CDS             complement(8188..8589)
                     /locus_tag="U1404_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348026.1"
                     /translation="MSKKCPRLILVMSAICIAIGGMIMFSFHRMSEEEKLQAQIRKEQ
                     ERMVLYAVNHYEGIEKIEFVNFEKDNKTGTWDSDAIINDKFHVTFVSWGEDDITINGG
                     KSQTGDYLVPKVATTVTEISNIQVKYYKELP"
     gene            complement(8615..8890)
                     /locus_tag="U1404_001065"
     CDS             complement(8615..8890)
                     /locus_tag="U1404_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348027.1"
                     /translation="MITDQDYRWIADDVYKVDPLKTDDTLKQGGRAGQGQYVIIEPPV
                     DAGNGMQAMAVAPIKGYDSDNKPIPDTSQVVIASFPYPDSSVNTEYL"
     gene            complement(8890..9300)
                     /locus_tag="U1404_001066"
     CDS             complement(8890..9300)
                     /locus_tag="U1404_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348028.1"
                     /translation="MSPKRTRLILVMSAICIAIGGMIMFSFHRMSEEEKLQAQIRKEQ
                     ERMVLYAVNHYEGIEKIEFTSFRENRMTGAWYAGAILNDDYKVTITAMGFDGDLSMND
                     GPSDKTGLYLRIKDKPTTISNPNHIEVIYFKGDN"
     gene            complement(9378..9611)
                     /locus_tag="U1404_001067"
     CDS             complement(9378..9611)
                     /locus_tag="U1404_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348029.1"
                     /translation="MITVQDYRWIAEDVYKVDPLKTDDTFKDGDRVAQDKFVILSQPQ
                     DMINGMQAMAVAPIKGYDAENKPIPDTSQVVIA"
     gene            complement(9608..10021)
                     /locus_tag="U1404_001068"
     CDS             complement(9608..10021)
                     /locus_tag="U1404_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348030.1"
                     /translation="MFVCKKRLVLFTGLLFLSIGGMMMFNFHRMSEEEKLQAQIRKEQ
                     ERMVLYAVNHYEGIEKIEFTSFEENKMTGSWSAGAILNDDYKVTITAMGFDGDLSMTN
                     GPSDKTGLYLRIKDKPTTISIPNQIEVIYFEGDNQ"
     gene            complement(10144..11085)
                     /gene="msrB"
                     /locus_tag="U1404_001069"
     CDS             complement(10144..11085)
                     /gene="msrB"
                     /locus_tag="U1404_001069"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001865281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEM5348031.1"
                     /translation="MKEIYLAGGCFWGMEGYFSQIDGILDTSVGYANGQVETTNYQLL
                     KQTDHAETLYLAYDETRINLREILLYYFRVIDPFSVNQQGPDKGRQYRTGIYYTDKAD
                     LPTIEQVMMEQSQLFGGRPLAVEVEPLAHYIPAEDYHQDYLKKNPQGYCHIDLGQAKI
                     PLIDVADYQKPDQQVLKDSLTDLQYQVTQEAATERPFENEFWNSDQAGIYVDITTGEP
                     LFLSTDKFDSGCGWPSFTKPISKEVATYFQDKSHGMNRIEVRSRAGHAHLGHVFDDGP
                     RDKGGLRYCINSAALRFIPREEMEAAGYGLFLDLLSE"
     gene            complement(11125..12654)
                     /locus_tag="U1404_001070"
     CDS             complement(11125..12654)
                     /locus_tag="U1404_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEM5348032.1"
                     /translation="MSTISYKPLNLYRQFKTAAQEFPNVAIYFDKPYASFPELGLENT
                     YQTVFEAIQKRAAQFSAAGIGYGDKVILYKSPAFDTYLLAVAVTALGAVPVMISYHLP
                     SSNLDVFAERLEKSFIVYDQETEERVAGMTRTDLVTKVFLPQVLVQEAVAFEENLLPE
                     DVIQYMTHTSGTTGVPKLICHTAQTMGWRVAWQQTIFDKMTERGLLAFHISPVHSRYN
                     IGVSSAIGLGFPLYPLSSARKDDVERALALHRPSALETHPNNFVQWARLAKEKPEVFS
                     SIRYYHSTFDAINIGTLRAFLEASKEQHPVFMQVYGQSECGPMILRYHRLENLGTVSG
                     RDMGIGLEGYTEARITDAQGNPLPAGENGHIQFLSKGRAVTYYKEDARFQDNVYGAWW
                     DSGDYGCMTPEGTLLLKDRQVDLIEHIDSNLALEDLLLDKLDFLSEVVIIRDVNGAPQ
                     PIIALVEDAEMNWEAWWAMVADLPLLKEPILMAYDDIPRTATMKVQRLKMEAEMKEKN
                     L"
     gene            complement(12787..13101)
                     /gene="trxA"
                     /locus_tag="U1404_001071"
     CDS             complement(12787..13101)
                     /gene="trxA"
                     /locus_tag="U1404_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM5348033.1"
                     /translation="MVQVITDANFEVETQEGVVLVDFWAPWCGPCRMQAPILEQLADE
                     VDEDELRIYKMDVDENPNTARQFGIMSIPTLLFKKDGQVVKQVAGVHTKNQIKAILAE
                     IG"
     gene            complement(13341..13661)
                     /locus_tag="U1404_001072"
     CDS             complement(13341..13661)
                     /locus_tag="U1404_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348034.1"
                     /translation="MHQLYQMLQDLYTKADQIDYATINAIEKEIERWLIRSIYAPLKL
                     REKNAILKQHKKKIQTIGNDGENSVKLIANSFDTSIKGEFSKKVQQVVKEKAKEYTKL
                     EEVE"
     gene            complement(13674..14060)
                     /locus_tag="U1404_001073"
     CDS             complement(13674..14060)
                     /locus_tag="U1404_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348035.1"
                     /translation="MDQYDKLKAELMKKEWEWEDIENQQRKAQKELQEHYENVEETTR
                     ILTRMLEEKYQEVLLELRQVGDETGDLHHLLNNGMSEWHTAIDQERYSSIHRLDQKQE
                     DLDTYYKNQYRKMQDQIDEIYTKYRE"
     gene            complement(14039..>14389)
                     /locus_tag="U1404_001074"
     CDS             complement(14039..>14389)
                     /locus_tag="U1404_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HEM5348036.1"
                     /translation="AQGLVKVAETTHQTLEKETTSTLTEVNEVYSSLGNVPFGFILSP
                     DEVRQAYSSAGVDYHSLVGDSTNQVEKFITRSNQLKQDLVDLESQIQAGIEQKVTEDQ
                     TLAQRIQEWTSTIN"
BASE COUNT         4077 a         3297 c         2696 g         4319 t
ORIGIN      
        1 aagtggctga cttttatctt atttcttctt tgcaaaatac tggcgtgtct ccttgatgat
       61 aacaggagag agagctagta aggcgatcaa gtttggtagg gccatgagac catttacaat
      121 atcggcaatg gtccaaatca agtctagttt gaggaaacca cccaaggcaa ccatagctac
      181 aaagaccaga cggtaaggta agatggcttt ggttccaaat agaaactcaa tacagcgttc
      241 accataataa gaccaaccca gaatagttgt ataggcaaaa agaactagac tgatggttag
      301 ggccaagaca cctggctgtc caaatactgt cgaaaaggct gcctgagtaa gaggagcacc
      361 tgccaagccc tctaccgacc actggtcagt tactagaatc gtaaaacccg ttaaggtaca
      421 gatgataagt gtatcaataa aggtacccgt catagaaatc aagccctgtt caactggatt
      481 atcagacttg gcagccgcag cagcaatagg cgccgaaccc aaaccagatt catttgagaa
      541 aaccccacgc gcaatcccac gctgaattgc ttgttgcaca gtcgcacctg caaaaccgcc
      601 cacagccgct gctggagtaa aggcagattt gaaaactaag gccagggttg gcaagagttg
      661 atcccaatgc acggccaaga cagtaatact tgctaagata tacaaaatcg ccatgaaagg
      721 aacgattttg gttgaaacat ccgagatttt ttcaatccca ccaaaaacaa cgaagacaat
      781 tgaaatagcc gttattacac tgacaagtgg cggttccaat ccaaaactcg tttccaaaga
      841 agcagtgatg gaattaactt gcgaaaaagt tccaatcccc aagagagcta ctaatacacc
      901 tgaaatagca aagaaaactg ccaagggctt ccacttctgt cccatcccca aggtgatata
      961 gtgcataggt ccaccagctg cttgaccgtt tgcatccttg gtacggtatt taatggctaa
     1021 aaatccttcc gcatacttgg ttgccattcc gaaaaaggcc gcaacccaca tccagaaaag
     1081 agccccagga ccacctgtag taatagctgt cgcaactccg acaatatttc ctgtaccaac
     1141 tgtcgctgcc aaagctgtac aaagggccgc aaagctggac acatctccct gaccagactg
     1201 gtcactggag aaaatcagac gaaaagccgt cggcaattta ctgatttgaa agattcccaa
     1261 ccgtagggta aaatagacac ccgttccgac caatagtaac aagaggggcg gtccccaaac
     1321 aagattgttg atagccttaa atagttctaa catagttcct cctaagcgtt tctaacccga
     1381 taaagctgcc ggaaaaacaa aaagaggctt aacacttcaa cctctagaat caacgtgaaa
     1441 aatacagaaa aagcctattt ttcaacgctc tgtcctttta cctgagagtt tcagtagctc
     1501 tacttttcca agcaggacta ccttgcccct tcggtgccaa aatggtctct ccagagttcc
     1561 gtccattgaa cagtcagttt cccttctacc caatatcaac cggttattca gttttatcta
     1621 gttttatttt aatctaattt cacgaaaaaa tcaagaatat tttctgatac tcaatgaaaa
     1681 tcaaaagtag cctaggaaac gaagccgaag atagaactct gttactgtct tgtttcaagg
     1741 taacaggctg aaaaggtcca ccggagcttt tcactcatca aggctcttga caacggataa
     1801 ttttgatttt caaagagtat gaatttttac aagtcttcca tttttatgat aaggtctgct
     1861 cgctcccaaa tcaaaggatt atgggtcgca atcacaatta gccgatctgg gctcttcaag
     1921 gataacaaaa tatccataat ttcttgggag ctcttaggat ctaaggcagc cgtcggctca
     1981 tctgctaaaa tcaatggagg atttttcagg atgactttag caagtgctac ccgctgagct
     2041 tcccctcctg agagttcata gataggctga gacaggtcca gataagacag accaactgca
     2101 tcaagtgccg cttcctgcct caatttcctt tcgtctttgg acaatttctg accaatcagt
     2161 cccaaatcca gattttctct gattgtctga ctttctaaaa gaccaaaatt ctgaaagaga
     2221 tagcctaatt cctccctaaa aaagagatgg ggcttcaact ttttcaaatc cttccccttg
     2281 tagagaatgt cacctgcatc ataggactcc aacttggcta aaatattcag caaggtcgtt
     2341 tttccgctac cactggcacc tatcaaggca tagacctttc cagcctgcaa gtctagcgtt
     2401 acatcagaaa acaaactgcg tttcccaaat ttcttttgaa ttgattggat agaaaacata
     2461 ctaggctcct ttcaaaatac ggatattcca agttccgtct ttcctcgcct gccacctcaa
     2521 taaacagagg gcattgacca taaacaaggc aaaactgata ctacttatga acatgtgacc
     2581 tgtcactacc atgcttgctc caagagccaa caagagggaa agcagttgga acgttaggta
     2641 tttcttatgg attcccaaga aatccatccc tgcaatttct ttgataaaaa tatcacgttt
     2701 aaactcttcg aagtataata gattcatggt attaaacagg ataattgatg tcacaatccc
     2761 taaaatagca cccatagatg ttgaaatggt ctctatccga atacggtcta aaagttctgt
     2821 aaagagggag gaactacttc tcacttcatt gacaaactga aacagatttc ttgccttcaa
     2881 ttcgcgcaaa agtttatccc tgtttttaaa taaaatactg ctatctactt cattcagcca
     2941 aaagtcagca gattcttttc ccagacttga cggtgccagc acaactaaaa tagggtctgt
     3001 caggtattgc acatgttgac tagaacgatg attgtagata aattgcttct gcccatcttt
     3061 taaataggca agttttccct tgatggtagc tgagcttgct tgattggcag gtctaaccat
     3121 acgattgata tagtcttggt aaagatggag ataaatatcg ctttcagggc gcaatttttc
     3181 aggtaagaga agttgaaatt ctccttcttg tagagaaggt aatgcttcgt ccgacaagtc
     3241 tacatcctgt atctgcaaat aatttggact aacgtagagg gtgttgcctg ctggatggta
     3301 gctatcaagg cttgtcccat cttccagttg ggagcccatt aaataggcat tcaaattact
     3361 tttgacaaag agcgcgccgt ctttctccaa agcttgcttt agtaaagggt accaattttc
     3421 aggcgaattt agtcctgagt gaccatccgc agcaatgttc caagccaaac tatagtagtc
     3481 ctcttctttc tcccactgcc gggcacccgc ttggtattct tgccaaatcc ctgaataata
     3541 gacggtttga gccatgccca atgacaccac cagtagagcc agcatttgcc ccataaccat
     3601 aatggtcagg attccttgca ggggcatttt cccttttaac aagggtaaaa agtgatagat
     3661 tcgaatggcc aaggtaaatg tagcagcgaa aaaaagggca atcaaaccaa gcaagaaatg
     3721 atagcctact agagctgcga ccagatagta gacagaatag ccatctaatc caatgaggta
     3781 ggccagtcca actgctggaa gaaccgcaaa tgggatagtt agagctatct ctttcgcatt
     3841 ttcctgtaga gatagtagaa ataaatgcca acgtgaatct cctgcgatca aacggatacc
     3901 tgctgtgcgc aattgcctta cattggcaac cactaccaaa gccatatagg taataagaaa
     3961 gaccagtacg gctaagaatt gaccaccttg tgtcagaaat gcgagtaaag tagcaatagt
     4021 cgaaggcttc cgaatctgaa cctcgtcaaa tccaagcgaa acaagaagag accgaagctc
     4081 ctctactgtc gctttccctt ggaaaataaa atatttggtt aaaagcgcag actccacctt
     4141 ttctgatgcc tgaaattcct ccagtcctct tggtaaggaa gactgactaa aattatcata
     4201 agaaaaggta cgtccacctg atgtacttgg ctcaatcacc cgcctggcaa tcacactatc
     4261 cgtctgttga gaatattcct ctaatcgttg tcttacatct gagtaagtca cgtcctcaga
     4321 taccgacaag ctggtcacag aaggataata atgaactagc atagtctcct tttggctgac
     4381 gcccaaccaa atcataaaga cggctagaat gatcgtcgat acaagtacaa attttccttt
     4441 cattctaact tcacctcatt aactatctgc catttaatac actcaactgg attttttctg
     4501 cctttttcgc ttgtttgttc agtaacatcc aactatttat caacagagcc acaactactc
     4561 ctaggctaac aataactgac tttgtcataa acattgccaa acccatccca acaagagcgg
     4621 agccgacttg ttctcctaga taagaaccat gcaattcgat aaaacgcatc cctgctatcc
     4681 gcttgatggc tatttctctt ttgaaggtct caaagtatag aagattcatc gtattgaaca
     4741 atagtatgga agtgaatatt ccaaggattg tcggagatag ggtcataaga atttcaagtt
     4801 gaacattttt tctcagggtg ttgtactgtt gcctgctaga taacaagcta cctattgtgt
     4861 ttcgtaaatt gtatttctcc aacagctgtt ccagcatctc tttatctttg aaaaatacaa
     4921 aatctggtaa ggcattttcc caaaaatagg acgtttcttc aaaactttca ggtgatagaa
     4981 caacaatcaa cggagcctgt aaaaattgct cataatttat cggagtatga ttgtaaatga
     5041 accatcgctt ctcgtctgaa atgtaataaa cgtttgaata caaacttatg gatttttctc
     5101 catccgcaag caatttccct accatgtcct caaaataagc ttggtaaaca ctcgcatcat
     5161 tttgcaaact ctttggtaat aataatgcaa tttctccttt acctaattgc tttatctctt
     5221 ccagctgctt gaaatcgtac aggccacctt ctgattgtat atagttcggc gtcacataca
     5281 gcaccctttc tagagaaatt tccttgctgg attcaatgat ggtatgttct tttattgtgt
     5341 tatgccgttc ttaaaaaacg actagcaatc tgccaactcc tcacccctga aagcatctct
     5401 atacctgccg accgcaagta gacagtctgc ccaactactg tcaatgcaag attggtgagt
     5461 ataaagataa taaggcctaa gctcggagct cccctaccaa gaaatagact taaactgttt
     5521 aatagggtcg gtctataaat atagctatcc accaatccca gtgactgtaa gacgttttct
     5581 accactttga tgtccagatt cccttttaca acatagtaat tttcagctaa gttggcctga
     5641 ctagctacta acctatccgc tttgaccaag ccctgtggaa gctccccctt cccaaaaaca
     5701 tcataactgg tagtagttcg cccactatca tctgtttctg ttattgtctt agcaattaga
     5761 ctattttcct tttcagctaa atttgtcagg gcatccgaca cttcttcata ggtcacttct
     5821 tcccctcgac ttaatatgga aaccgatgga tagtaatgat aaattaaaga atcgagttgt
     5881 agactcacta accatataca gaagagacag acgctaaaag tagataaata agtaaatact
     5941 tttttcataa cgaacctcat ttgcacaaaa aggaggtgga ctccaccacc tccctatcat
     6001 tagaacccgt aaccaaaatc aacatgtttt ccaaagttta ttgtatcact tcgctattat
     6061 ctctatctta acatataaac aaaacaaaaa caaggttgct tgcattctta ccatgccgta
     6121 cgcatgaaga aaatgcgtat aaccatttcc tagacatctg cattttcaaa gcgttttcat
     6181 gaaaccaata cttcaaccag gatcgtcttt catttccaaa gctataaaca gttttctacc
     6241 aaaaacggat gccaacagca agaaaatagt tttgaaaacg aaaatttctt tattcgcttg
     6301 ttatgcgtaa ctatatctca gcttaacttt gggtgattgt atcatacaag ctgctgtgtt
     6361 tatccacggc ttcttcaatc cctgtacgta cactcccttt gatactggtt tccaaccgtc
     6421 ctctcatcgt ttgaatcgtt tgcttcgttt cgctggctat cttctgaatg tctgtcttcc
     6481 ctgttctttt tatagtgtcg cgtttatcca acaagactct agcctgcatt actatgcgat
     6541 agcgctctat tttccgccgt agttctcgga aagagaaatc aggatctata tcggtatagt
     6601 aatcattcaa gtccatttga atagtccctc cttaattggc taatagtgtc ttctaagcgg
     6661 tagaggtctg tccgatattg ctgggacagc ctctcctcct gttgaaacag ttgatccatc
     6721 tcttgacggt actgataaaa ggattcttct tgtaattgat ccaactcttg aaaaaaggac
     6781 aaggccgcat cataatccaa ggaatgacga ctgagaaagc aacgcatctc ttcctgttct
     6841 ctttctatca agagttttaa agcattctga cgctgttcta ggtcttcttg acgtgcttca
     6901 atcttatttt tctcttggtt atagtcatcc tccagatcaa ataattcttg ctctcgctta
     6961 cggattcttt cccatattac atctgattcc atttctcaaa atctcctgct agtctcttat
     7021 ctgtttccag cattgtgttg attgcttgaa taatttgagt gtccaagatg gtgaactttt
     7081 ctgtagctat ctctgccctc tgccgatata tatccatagt ctcttcaatc tctctgacaa
     7141 tggtttcctg actaacacca tactctgaga aaagggcaca aacttcccaa tagctgagag
     7201 ctgaatagga atgaaaatca atcgaattcc acaactcctc tgcttggtgt acatagtcat
     7261 cgcaatgggc aaaaatactc atttgccctg catctgcaac actagcaatc cctgctgaga
     7321 tggttctggc ctgctcactg tccaaaaaaa tctcctcact acgacttagg ccacctttag
     7381 ataaggctgt tttctgcttt ttccagcgtt tcatagccaa acgagtatct tccaaaggag
     7441 caccagtaaa ggttgatacc acctgaccgt tggcatcaat cagctgacca tatttgttaa
     7501 acttccaagc atttagcatg tgatcagcta tagcatcccc tgggatattc ttcaccgctg
     7561 gataaatagc tgatttcgtc ttatttcccg taatatctcc aaggaagtca tacttatttc
     7621 gatagttacg aaactgtgct ctatgctgct gcatatactc tatttcatct tctgaaatca
     7681 tattgtgaat gtcgggaccg ttaaaggtaa tagcaggaag atctttcttc aaagcaacat
     7741 acatcgccag agagcctcct aacgaatgcc ctgtgattgt gatggttgca tcgggatagc
     7801 gttgtactat ctgatctgca aaagctaccg cagttataga ctgagatata taggggacat
     7861 tctgaccggg aacggtaaaa gtagccgtat tccctccgcc tatcatagaa atatctgttg
     7921 cccaatcttt aatgtcgcca tcattagtcc ctgcgtaggc aataacgact tgggaagtat
     7981 ctggaatcgg tttgttgtca gtgtcgtaac ccttgatcgg agcaaccgcc atggcctgca
     8041 taccgttgcc cgcatcaaca ggtggctcga tgatgataaa actaccattt acaactggag
     8101 tatcttgtat tagtggagtt ttaggtgcct ttaataggtc tacatcataa accactttag
     8161 aaatatctct ataatcttta tccgatatca tggcaactcc ttatagtatt ttacttgtat
     8221 attactaatt tctgttactg tggttgctac tttaggaact aagtaatctc ctgtttgaga
     8281 ttttccacca tttattgtaa tatcatcttc tccccaagat acaaaagtaa catggaattt
     8341 gtcatttata attgcatcac tatcccatgt ccctgtctta ttatcctttt caaaatttac
     8401 aaactctatc ttctcaatcc cttcatagtg attgacggcg tacaaaacca tccgctcttg
     8461 ttcctttcgg atttgagcct gcaatttttc ttcctcactc atacggtgaa aactaaacat
     8521 tatcattcct cctattgcga tacaaatggc actcataacc agtatgaggc ggggacattt
     8581 tttggacata taaaacctcc ttaagttgat tatactataa atactcggta tttacactag
     8641 aatcaggata aggaaaactg gcaataacga cttgggaagt atctgggatc ggtttgttgt
     8701 cagagtcata gcccttaatc ggagcaaccg ccatggcctg cataccgttg cccgcatcaa
     8761 cgggtggctc gatgatgaca tactgccctt gtcctgctct accgccttgt tttaaagtgt
     8821 catctgtttt caacggatct actttatata catcatctgc aatccagcga taatcctgat
     8881 ctgttatcat tagttatccc ccttaaaata gattacctca atgtgatttg gatttgaaat
     8941 ggttgtcggc ttgtctttaa ttcgtaaata caaacctgtt ttgtctgaag gaccatcatt
     9001 catcgacaaa tctccatcaa atcccattgc tgttatcgta actttataat catcatttaa
     9061 tatagcacct gcataccaag cacctgtcat cctattttct ctaaaactgg taaactcgat
     9121 cttctcaatc ccttcatagt gattgacggc atacaagacc atacgctcct gttccttacg
     9181 gatttgagcc tgcaacttct cttcctcact catgcgatga aaactaaaca ttatcattcc
     9241 tcctattgcg atacaaatgg cactcataac cagtatgagg cgggtacgtt ttggggacat
     9301 ataaaacctc cttatgttga ttatactata aatactcggt atttacacta gaatcaagat
     9361 aagaaaacta tcttatacta ggcaataacg acttgggaag tgtctggaat cggtttgttt
     9421 tcagcatcgt agcccttaat cggagcaacc gccatagcct gcataccatt gatcatatct
     9481 tggggctggg agaggatgac gaatttatct tgtgcgactc ggtccccatc cttaaaagtg
     9541 tcatctgttt tcaacgggtc tactttatat acatcctcag caatccagcg ataatcctga
     9601 actgttatca ttggttatcc ccctcaaaat agattacctc aatttgattt ggaattgaaa
     9661 tggttgtcgg cttgtcctta attcgtaaat acaaacctgt tttgtctgaa ggaccatttg
     9721 tcatcgacaa atctccgtca aatcccattg ctgttatcgt aactttataa tcgtcattta
     9781 atatagcacc tgcagaccaa gatcctgtca tcttattttc ttcaaagctg gtaaactcga
     9841 tcttctcaat cccttcatag tgattgacgg catacaagac catccgctct tgttcctttc
     9901 ggatttgagc ctgcaacttt tcttcctcac tcatgcggtg aaaattaaac atcatcattc
     9961 ctcctattga caggaacaac aaaccggtga ataaaactag tcgttttttg catacaaaca
    10021 taaaaatcct cctaatataa ttatattatt cttgaacata acttttcaaa taaaaaggat
    10081 aataaagagc ttaagttcaa taccttaagc tctttaatct atttactttg aagtgtttcc
    10141 ctgtcattct gacagcaaat ccaaaaacaa gccatatcct gctgcctcca tttcctctct
    10201 cggtatgaag cgaagggctg cggagttgat acagtaacgg agaccgcctt tgtcacgtgg
    10261 tccgtcatca aagacatgac ctaaatgagc atgaccagcc cgactgcgga cttcaatacg
    10321 gttcatgccg tgggacttat cttggaaata agtcgccact tccttgctga ttggtttggt
    10381 aaaggagggc cagccgcagc ctgaatcgaa tttgtctgtc gagagaaaga ggggctcacc
    10441 agtcgtaata tcgacgtaga tgccagcttg gtcgctattc caaaactcat tttcgaaggg
    10501 tctttccgtc gcagcttctt gagtgacttg atactggagg tcggtcaagc tgtctttcaa
    10561 gacttgctgg tctggctttt ggtagtctgc aacatcaatc agagggattt ttgcctgccc
    10621 aagatcgata tggcagtacc cttggggatt tttcttgaga taatcctgat ggtaatcttc
    10681 agcggggatg taatgtgcga gtggctccac ttcaacggct agggggcgtc cgccaaagag
    10741 ctgggactgc tccatcatga cctgctcgat ggtcggcaaa tcagccttat ctgtgtaata
    10801 gataccagtc cgatactggc gacctttgtc aggtccctgc tgattgacag agaagggatc
    10861 aatgacgcgg aaataataga ggagaatttc ccgcaaattg atacgagtct catcataggc
    10921 tagatagagt gtctctgcgt ggtctgtttg tttgaggagt tgataattgg tcgtctccac
    10981 ctgtccattg gcatagccaa cgctggtgtc aagaatacca tcgatctggg aaaagtagcc
    11041 ttccatcccc cagaaacaac cgcctgctag gtagatttct ttcatgtgaa ctccttctta
    11101 tctgcaagcg tggtttcgtc acccttacag atttttttct ttcatttctg cttccatttt
    11161 gaggcgttga accttcatgg tcgctgttcg tggaatatcg tcataagcca tcaagatagg
    11221 ctctttcaat agtggtaggt ctgcaaccat ggcccaccaa gcttcccaat tcatctcagc
    11281 atcttctacc agagcgataa tcggctgcgg tgcaccattg acatcgcgga taatcacgac
    11341 ttctgataaa aagtccaatt tatccagcaa taagtcttcc aaggcaaggt tgctgtcgat
    11401 gtgctcaatg aggtcaacct gacggtcttt tagaagaagc gtcccctctg gagtcatgca
    11461 gccgtagtcg ccactatccc accaagcacc gtacacatta tcttggaagc gggcatcttc
    11521 tttgtagtaa gtcacagcac ggccttttga caggaactgg atatgtccgt tttctccagc
    11581 tgggagagga ttcccttggg catctgtgat gcgtgcttct gtgtaacctt ccagaccaat
    11641 ccccatatct cgtccgctaa ctgttcctag gttttccaag cgatggtaac gtaaaatcat
    11701 tggaccacat tcactttgac cataaacctg cataaagact ggatgctgct ctttagaagc
    11761 ctccaagaag gcgcgaagcg taccaatatt gatagcatca aaggtcgaat ggtaataacg
    11821 aatgctacta aagacctctg gtttttcctt ggccaatctt gcccattgga caaagttatt
    11881 cggatgggtt tccagagcac ttggacggtg aagagcaagc gcccgttcaa catcatcttt
    11941 tcttgcagag gaaagcgggt agagggggaa tcctagccca atcgccgacg acacgccgat
    12001 attatagcgt gaatgtacag gggagatatg gaaggccaac aagcctctct ccgtcatctt
    12061 gtcaaaaata gtttgttgcc aagctactcg ccagcccatg gtctgtgctg tgtggcagat
    12121 tagttttgga acacctgtcg tccctgaagt atgagtcatg tattgaataa catcttctgg
    12181 caggagattt tcttcaaaag caactgcttc ttgcactagg acttggggta aaaatacctt
    12241 tgttaccagg tcagttcgag tcattcctgc tacacgttct tccgtttctt ggtcgtagac
    12301 aatgaaagac ttttccaatc gctccgcaaa cacatctaaa ttcgaagatg gcaaatggta
    12361 ggaaatcata acaggaacag cacccaatgc cgttaccgct actgctaaca aataggtgtc
    12421 gaaagctgga ctcttatata gaattacctt gtccccatag ccaatacctg ctgctgaaaa
    12481 ttgggcagct cttttttgaa tagcttcaaa aactgtttga taggtatttt ccaatcctaa
    12541 ttcagggaaa gatgcgtagg gtttgtcaaa ataaatggca acatttggaa actcttgagc
    12601 tgctgtttta aactgacgat agagatttaa tggtttgtaa ctaatagttg acatatctaa
    12661 cctttctaaa atgacaatga taaggttatt ataacatctt gtgccaacct tcacaatctg
    12721 atatcttttt atgactcaca gttgtgaaaa aacaagtagt caatcaccac ttgctttcat
    12781 tttcaattaa ccaatctctg ccaagatagc tttgatttga tttttcgtgt ggacaccagc
    12841 aacttgtttc acaacctgtc catctttttt gaacaaaaga gttgggatag acatgatacc
    12901 aaactgacga gctgtgtttg gattctcatc aacatccatc ttgtaaatac gcaattcatc
    12961 ttcgtccact tcgtctgcta attgttccaa gatcggtgct tgcatacggc atggaccaca
    13021 ccatggtgcc caaaaatcta caaggactac gccttcttgt gtttcaactt caaagtttgc
    13081 atctgtaata acttgaacca taattttctc cgtttctgtt tttctactat cattctacac
    13141 caaaaaaaaa cagaaagcga atttttgcta cgggatgaag catgagataa acgtatctat
    13201 aagaatttca gttgtaaaaa aatgggtata gctaaactag accgcaggag gacgaggggg
    13261 aactgggaga ctgttcttcc tataaaatcc agttttagca atgggaaaag atttacgaaa
    13321 ggatgctacg ggatgagata ttactctacc tcttccaatt ttgtatattc ttttgccttt
    13381 tctttcacaa cttgttgtac cttttttgaa aactcgcctt ttatacttgt atcaaaactg
    13441 tttgcaatca attttacgga attttctcca tcatttccaa ttgtttgaat tttcttcttg
    13501 tgttgtttta aaattgcatt tttttctcgc agtttgagtg gagcatagat agagcgaatc
    13561 agccaacgtt caatttcttt ctctatagca ttaatcgtcg catagtctat ctggtcagct
    13621 ttggtatata aatcttgcaa catttgataa agttgatgca ttggctctcc cttctattct
    13681 cggtattttg tataaatttc gtcaatctga tcttgcattt ttcggtactg gtttttatag
    13741 taggtatcca agtcctcttg tttctgatcc aatcggtgaa tggagctgta tcgctcttga
    13801 tcgattgcgg tatgccattc ggacatgcca ttgttgagta aatggtgcaa gtctccagtc
    13861 tcgtctccga cttgtcgcaa ttctaacaga acttcttgat acttttcttc caacattcga
    13921 gtcaatattc gagtggtttc ttcaacattt tcatagtgtt cttgtagttc tttttgagct
    13981 tttcgttgtt gattctcaat atcctcccat tcccactctt tcttcattaa ctctgccttt
    14041 aatttatcgt actggtccat tcttgtatcc tctgtgctaa tgtctggtct tccgttactt
    14101 tctgctcgat ccctgcttgg atttgacttt ctaagtccac taaatcctgc ttgagttgat
    14161 tggagcgagt gataaacttc tcgacttgat tggtgctatc tcctaccaga ctatgatagt
    14221 caacacctgc actgctgtag gcctgtctca cttcatcagg actcaaaatg aagccaaaag
    14281 ggacatttcc taagctactg tagacttcat ttacttctgt aagggtggaa gtggtctctt
    14341 tttcgagtgt ttggtgagtg gtttccgcaa ccttaaccag tccttgagc
//
LOCUS       DASGCC010000053        14232 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.053, whole genome shotgun sequence.
ACCESSION   DASGCC010000053 DASGCC010000000
VERSION     DASGCC010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14232
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.053"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            7..372
                     /gene="mscL"
                     /locus_tag="U1404_001075"
     CDS             7..372
                     /gene="mscL"
                     /locus_tag="U1404_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEM5348037.1"
                     /translation="MLKDLKAFLFRGNIVDLAVAVVIGGAFGAIIKSFVNDIITPLIL
                     NPALKAANVQNIADLAWNGVKYGSFLSAVINFLIIGTSMFFVVKAAEKAMPKKVEEKA
                     PAGPTQEELLAEIRDLLKK"
     gene            complement(605..1618)
                     /gene="galE"
                     /locus_tag="U1404_001076"
     CDS             complement(605..1618)
                     /gene="galE"
                     /locus_tag="U1404_001076"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEM5348038.1"
                     /translation="MSILVTGGAGYIGSHTVVELLKLGKEVVIVDNLSNSSILVLDRI
                     ETITGKRPTFYELDVADKEALRQVFENENIEAAIHFAGYKAVGESVAKPIMYYENNIM
                     STLALVEVMTEFSVKKIVFSSSATVYGLNNPSPLVETMPTSATNPYGYTKVMLEQILR
                     DVEVADKEWSIALLRYFNPIGAHESGLIGEDPAGIPNNLMPFISQVAVGKREELSVFG
                     NDYDTIDGTGVRDYIHVIDLALGHIKALEKISTTTGVHTYNLGSGQGTSVLELVKAFE
                     KVNGVPVHYKLVDRRPGDVATCYANADKAWKELNWKTEKTIEDMCRDTWNWQSKNPNG
                     YEG"
     gene            complement(1722..1898)
                     /locus_tag="U1404_001077"
     CDS             complement(1722..1898)
                     /locus_tag="U1404_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEM5348039.1"
                     /translation="MSKTVVRKNESLDDALRRFKRAVTKAGTLQETRKREFYEKPSVK
                     RKRKSEAARKRKKF"
     gene            complement(1996..2625)
                     /locus_tag="U1404_001078"
     CDS             complement(1996..2625)
                     /locus_tag="U1404_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01906 family membrane protein"
                     /protein_id="HEM5348040.1"
                     /translation="MRTKLQIIGTILFVLSAAVLGTIYLAWLVYPLEISFLGLEKVVY
                     MKVADISYNFNILMNYLTNPFASVLDMPNFSSSADGLKHFADVKHLFHLTQGIFILTL
                     PAFVLFVKNILLKGYGDLVKKVIFWTMLTPMIIGLLGVLVGFDQFFALFHTVLFPGDS
                     TWLFDPAKDPVIYILPQEFFLHCFVLFFVLYEFFFWTILAWTGKKNRIG"
     gene            complement(2615..3388)
                     /locus_tag="U1404_001079"
     CDS             complement(2615..3388)
                     /locus_tag="U1404_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HEM5348041.1"
                     /translation="MTYTGYLIDLDGTIYEGKKRIPAGERFIHRLQECQIPYLFVTNN
                     TTRRPEMVQAMLAENFNIETPLETIYTASLATVDYMNDLGKEKTVYVIGEDGLKSAIF
                     EAGYVEDTENPAYVVVGLDTQLTYEKLTIATLAIQKGATFIGTNPDLNIPTERGHLPG
                     AGSLIALLKAATRVEPTFIGKPEVIIMDKALEILGTERSQTVMVGDNYLTDIRAGIDN
                     GFPTLLVLTGFTKPEEVADLPLAPTHVLNSLDEWSFDEN"
     gene            complement(3398..4015)
                     /locus_tag="U1404_001080"
     CDS             complement(3398..4015)
                     /locus_tag="U1404_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5348042.1"
                     /translation="MSQDKWLEWAVRLQALAQTGLAYGKDVYDMERFEEIRQIAAEML
                     VEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQEDKILLVQENDGLWSLPGGWCDVD
                     QSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQP
                     NSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASRSEHWETRFD"
     gene            complement(4002..4742)
                     /locus_tag="U1404_001081"
     CDS             complement(4002..4742)
                     /locus_tag="U1404_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[acyl-carrier-protein] thioesterase"
                     /protein_id="HEM5348043.1"
                     /translation="MGLTYQEEFTIPFDMVDVKQEIKLPDFISYCLGVSGRQSEELGR
                     SDLYVFQEFGLIWVVTDYELTIQRLPKYNETITIKTEAVAYNKFFCHRMFYIYDAAGN
                     LLLDILCYFVLIDFETRKVAPVPEDLIAPYQSEQVKKLPRAPKYQLLENPSVQEFPVR
                     YFDLDMNGHVNNGKYLEWMYEALGYDFLLCHVPKKIQLKYLKEVEATSLVSSRMVAEA
                     GGSQHEIVVDGHIHAQAVIEWRERHVAG"
     gene            complement(4973..6100)
                     /locus_tag="U1404_001082"
     CDS             complement(4973..6100)
                     /locus_tag="U1404_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002961311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEM5348044.1"
                     /translation="MKKRPTSAYIHIPFCTQICYYCDFSKVFIKNQPVDEYLAALMEE
                     VKFYDLPALRTLYIGGGTPSALSADQLDYLLTNLEDLLDLSQLEEFTIEANPGDLTAD
                     KIAVLKKSKCNRVSLGVQTFDDRMLKKIGRSHNQAQIYETIATLKEAGFYNISIDLIY
                     ALPGQTMEQVVDNVAKALELDIPHMSLYSLILENHTVFMNRQRRGNLHLPNEDVESDM
                     FDYILQELEKNGFEHYEISNFTKPGFESRHNLMYWDNSEYYGLGAGASGYIDGMRYRN
                     RGPIQHYLKSIREKGHSRLHEEFLSQTEQMEEEMFLGLRKKTGVSIERFEEKFGISFE
                     DRYGQVVRDLKNEGLLQEEDRWLRMTKKGLFLGDTVAERFI"
     gene            6195..6773
                     /locus_tag="U1404_001083"
     CDS             6195..6773
                     /locus_tag="U1404_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5348045.1"
                     /translation="MKKEIIYDCINLILSFLLCRWLFMTFLFYQFSNIFMTIDFWPTL
                     AAILLMTGFCFTLFRLVYKPHISRLTLWFFYACYGLLLVYLLFFKSMGVRGVNWNLLS
                     TFSQDLFLNPTILVFNLLLFLPLGLLFSFSWKKLSLFVGAILLVEACQFFFSLGFFDL
                     GDILLNTSGFALGNFLGQSAIAQSFKNRIQKK"
     gene            complement(6908..9175)
                     /gene="glgP"
                     /locus_tag="U1404_001084"
     CDS             complement(6908..9175)
                     /gene="glgP"
                     /locus_tag="U1404_001084"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM5348046.1"
                     /translation="MINLQNFVQSMYAKRIEDCTDQELYYALLAFTKQQSEAKYTNDQ
                     KKKVYYISAEFLIGKLLSNNLINLGLYDEVKSQLVAAGKDLIAIEDMELEPSLGNGGL
                     GRLAACFLDSIASLGLNGDGVGLNYHFGLFRQLFEYHQQSAVPNEWITPRSWLTESPI
                     SYQVPFANFTLTSKLYDIDVPGYKMERKNRLRLFDLGSVDDNIIYDGIEFDKEDIFRN
                     LTLFLYPDDSTDEGKVLRIFQQYFMVSNAAQLLIDEAVAKGSNLHDLPDYAVVQINDT
                     HPSLVIPELIRLLELRGISFDEAVEIVKKMTAYTNHTILSEALEKWPLDFLNYVVPHL
                     VPFIVELDRRAKEVKDDPAVNIIDEYGRVHMAHMDIHYGYSINGVAALHTEILKTSEL
                     KAFYELYPEKFNNKTNGITFRRWLMHANPSLASYLDGLLGHGYHHDASELEKLLDYKN
                     DKELKSWLEKTKQHNKRKLQRHIAKTQGVHVNPESIFDVQIKRMHEYKRQQMNVLYVI
                     HKYLDIKAGNIPTRPLTVFFGGKAAPAYTTAQDIIHLILVLSQVIKNDSEVAPHLQLV
                     MIENYNVTEASFIIPAADISEQISLASKEASGTGNMKFMLNGALTIGTDDGANVEIHE
                     LVGDENIYIFGQDSQTVIEHYANRTYHPYSFYEREVIRPLIDFITSDTIRHAGGIDER
                     LWRLQDNLKHNDHFMTLLDLEDYIVTKERMLADYEDRDSWLEKVIVNIAKAGFFSSDR
                     TIQQYNEDIWHLEAK"
     gene            complement(9351..10064)
                     /gene="deoD"
                     /locus_tag="U1404_001085"
     CDS             complement(9351..10064)
                     /gene="deoD"
                     /locus_tag="U1404_001085"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007519526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM5348047.1"
                     /translation="MSIHISAKPGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRN
                     MFGYTGTYKGHRVSVMGTGMGMPSISIYAHELINEYGVKKLIRVGTAGSLNEDVHVRE
                     LVLAQAAATNSRMINIDWPEYDLPQIADFDLLDKAYHIAKELNMTTHVGNVLSSDSFY
                     SPKLFSRNLELGQLGVKAVEMEAAALYYLGAKFGVQTLAIMTISDSLVNPEENTTAEE
                     RQNTFTDMMKVGLETLIAE"
     gene            complement(10097..10906)
                     /locus_tag="U1404_001086"
     CDS             complement(10097..10906)
                     /locus_tag="U1404_001086"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM5348048.1"
                     /translation="MSLLAKINETKTFLEEKGLVKPEFGLILGSGLGELAQEVENAIV
                     IDYADIPNWGKSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPMEVVTFPVRVMKA
                     LGCEGVIVTNAAGGIGYGPGTLMAITDHINMTGQNPLIGENLEEFGPRFPDMSNAYTK
                     EYREKAHAVAEKLGIKLDDGVYLGVTGPTYETPAEILAFKTMGAHAVGMSTVPEVIVA
                     AHSGMKVLGISAITNFAAGFQSELNHEEVVEVTEQIKGNFKGLVKAILAEL"
     gene            complement(10918..11274)
                     /locus_tag="U1404_001087"
     CDS             complement(10918..11274)
                     /locus_tag="U1404_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEM5348049.1"
                     /translation="MEKLTVYYNPDCSKCKKLRILLPSQDMEVKWVNYLETPLRGAEL
                     TALLEKMGSQPSAVTRLKEEERLALPEEEIFERLVKEPALLNRPIIEREQTAFLCRPL
                     EIIKEKMPEYDWSDYL"
     gene            complement(11274..12485)
                     /locus_tag="U1404_001088"
     CDS             complement(11274..12485)
                     /locus_tag="U1404_001088"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEM5348050.1"
                     /translation="MPKFKRVHLVVMDSVGIGAAPDSDKFFNAGVADTESDTLGHISE
                     KAGLEVPNMTKIGLGNIPRDTALATVPAESHPTGYVTKLEEVSLGKDTMTGHWEIMGL
                     NITEPFDTFWDGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIV
                     YTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFSRT
                     ANRHDYAVSPFEETVLNKLADAGVPTYSVGKISDIFNGSGITNDMGHTKSNMHGVDVL
                     IDTLKLSDFEEGFSFTNLVDFDAVYGHRRNIEGYRDCLQEFDARIPEIIDNMREDDLL
                     LITADHGNDPSYAGTDHTREYVPLLAYSKVFKGSGVLPVGHFADISATVAENFGVDTA
                     MIGESFLSQLV"
     gene            complement(12814..13488)
                     /gene="rpiA"
                     /locus_tag="U1404_001089"
     CDS             complement(12814..13488)
                     /gene="rpiA"
                     /locus_tag="U1404_001089"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEM5348051.1"
                     /translation="MTNLKEQVGIKAAEFVTDGMIVGLGTGSTAYYFVQEIGRRVAEE
                     GLQITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGADEVDGDFNGIKGGGAALL
                     MEKVVAVNSKDCIWIVDESKVVQTLGAFKLPVEVVQYGAENLFRLFEKKGYRPSFRMR
                     NGEKHITDMQNFIIDLDLRRIEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEGP
                     NIIEKK"
     repeat_region   13590..14219
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=13656..13691
                     /rpt_unit_seq="gttttactgttacttaaatcttgagagtacaaaaac"
BASE COUNT         4066 a         3213 c         2736 g         4217 t
ORIGIN      
        1 taggatatgt tgaaagattt aaaagcattt ttgttccgtg ggaacattgt tgaccttgct
       61 gtagcagtgg taattggtgg agcgttcggc gcaattatca aatcatttgt aaatgatatc
      121 atcactccat tgattttgaa cccagctttg aaagcggcaa atgtacaaaa tattgctgac
      181 cttgcatgga atggtgtgaa gtacggtagt ttcttgagcg ctgttattaa cttcctaatc
      241 attggcactt caatgttctt tgttgttaaa gcagctgaga aagcaatgcc taagaaagtt
      301 gaagagaaag ctcctgctgg tccaactcaa gaagagttgc ttgcagaaat ccgcgatttg
      361 ttgaaaaaat aatcaataat atattgggag tgggaaagaa ctcgaccagt ctaaaaagag
      421 ttcgtcttcc cacccccgca cagttgatta ggtcagattt ggagtatgaa acacgaacaa
      481 atctgccaat caaccactgc gctgagatgt tgacacgaac tctgagaagc gaggatggac
      541 tttctgccca gcctctcttc cataattaca aaaataagat gtgagcctcc actcacatct
      601 tttcttatcc ttcgtatcca tttggatttt tcgattgcca gttccatgtg tcgcggcaca
      661 tatcttcaat tgttttttct gttttccagt tcaactcttt ccaagccttg tctgcgttag
      721 cgtaacaggt tgccacatca cctggacgac ggtcaacaag cttataatgt actggaacgc
      781 catttacctt ttcaaaggct ttgaccaact ctaatacact tgttccttga cctgaaccaa
      841 gattgtaagt atgtacacct gtagtagttg aaattttttc aagcgccttg atatgaccga
      901 gtgccaaatc aatcacatgg atataatcac gcactccagt accatcaatt gtatcataat
      961 cgttaccaaa aacgctgagc tcctcacgtt taccaactgc tacctgtgaa ataaacggca
     1021 tcaaattatt aggaatacca gctggatctt ccccaatcaa gccagattca tgggcaccga
     1081 ttggattgaa ataacggagc aatgcaatac tccactcctt atctgctact tccacatcac
     1141 gcaagatttg ttccaacata actttggtat agccgtacgg attcgttgcg ctagttggca
     1201 tagtttcaac caaaggcgat ggattattga ggccataaac agtcgcactt gaggagaaga
     1261 caattttctt aacactaaat tctgtcatga cttccaccaa agctagggtt gacatgatat
     1321 tgttttcata gtacataatt ggcttagcca ctgattctcc tactgccttg tagccagcaa
     1381 agtgaatggc tgcctcaatg ttttcatttt caaaaacttg gcgcaaggct tccttatctg
     1441 ccacgtccaa ctcatagaaa gttgggcgct tgccagtgat ggtttcaatg cgatctaaaa
     1501 ccaaaatact tgagtttgaa agattatcca cgataaccac ttctttcccc aacttcaaca
     1561 attcgacaac cgtatgacta ccaatataac ctgcaccacc agtaactaag atactcatct
     1621 ttttactcct tttcacctag acaaaattct atatccctat tatatgttac ctgttgtaaa
     1681 aagtaaacaa aaaacagcct ttcggccgtt ttcaaattca attagaattt tttacgcttg
     1741 cgagctgctt ctgatttacg tttacgtttt acagatggtt tttcgtagaa ttcgcgtttg
     1801 cgtgtttctt gaagagtacc agctttagta accgcacgtt tgaaacgacg aagagcatca
     1861 tcaagtgatt cgttcttacg tactactgtt tttgacattt tttcactccc ctcaatttca
     1921 aagtctttat cattttacta tgattcaact catttgtcaa tatttttttc attctaaaat
     1981 atgaatttta cgttcttatc ctatcctatt cttttttcct gtccacgcca gtattgtcca
     2041 aaagaagaat tcgtaaagga caaaaaataa tacaaagcaa tgcaagaaaa actcttgggg
     2101 caaaatatat atgacaggat cctttgcagg gtcaaatagc catgtagaat ctcctggaaa
     2161 tagcaccgta tgaaacaatg caaaaaactg atcaaagcca acaagaactc ctaataaacc
     2221 gattatcatt ggcgtaagca tggtccagaa aatgaccttt ttaaccaagt ctccataacc
     2281 ttttagcaga atgtttttta caaaaagcac aaaggcaggg agggtgagga taaaaattcc
     2341 ctgagttaga tggaataaat gtttcacatc cgcaaaatgt ttcagaccat cagctgagga
     2401 tgaaaaattt ggcatgtcta aaacacttgc aaaaggattt gttagatagt tcatcaggat
     2461 attgaaattg taggaaatat ctgccacctt catgtagacc actttttcca accccaaaaa
     2521 agaaatctca agcggataaa ctagccaagc taggtagatg gttcctagaa ctgctgccga
     2581 taagacaaat aaaatcgttc cgataatctg taacttagtt ctcatcaaaa ctccattcat
     2641 ctaggctgtt gaggacatgg gttggagcca ggggtaagtc tgctacttct tctggcttgg
     2701 taaatcctgt caggactaaa agagttggaa atccattgtc aatccctgca cgaatatctg
     2761 tcaggtagtt atctcctacc ataactgtct ggctgcgttc tgtgcctaaa atctccagag
     2821 ccttgtccat gataatgact tcaggcttac cgataaaggt cggctctact cgggtagcag
     2881 ctttcaaaag cgcaataagt gagcctgctc ctggcaaatg acctctttca gtcggaatgt
     2941 tcaaatcagg attggtaccg ataaaggtcg ctcccttttg aatagctaag gtggcaatgg
     3001 tcagtttttc ataggtcaac tgagtatcca aaccgacaac aacataggct ggattttccg
     3061 tgtcttccac ataacctgcc tcaaaaatgg cagacttgag cccgtcttct ccaatgacat
     3121 agactgtctt ttccttgccc aagtcattca tataatctac tgtcgccaga ctggctgtat
     3181 agattgtttc aagcggtgtc tcaatgttaa agttttcagc caacatagcc tgcaccatct
     3241 caggacggcg ggtggtattg ttggtcacaa ataaataggg aatctgacat tcttgcaagc
     3301 gatgaataaa acgttcacca gcaggaatcc gctttttccc ttcataaatc gtaccatcca
     3361 aatcaatcaa ataacctgta tatgtcattt ttcctcctta atcaaatcgt gtttcccaat
     3421 gctcagaccg actagcttcc aagcaaagtg ctaactgctc agctgtattt ttcccaaggt
     3481 agagcggtgg taagtcatct agactgaaaa agccactggc aactgtttcc gaattgggct
     3541 gaaactcccc gccaaggaga cgacatagaa tgaagacctt ggtcacgcgg tgggctgact
     3601 tggcaggatt gttcttgtgt ttgtccaaaa tcgccaccac acgttgagcc tccacatcca
     3661 gccccgcttc ttcctttact tccttgacta cattgtcctt gacagactgg tccacatcgc
     3721 accaaccacc tggtaaggac cagagcccat cgttttcctg aaccagtagg attttatcct
     3781 cttggaaaat agctgcgcgg gtatccagct tgggtgtctg atagcctgtt tcattgcaaa
     3841 acaagtcttt cactacttcc aagggctgtc cagatggctc taccaacatt tccgccgcaa
     3901 tctgtctgat ttcctcaaat cgctccatgt cataaacatc ttttccatag gccaagcctg
     3961 tctgagccaa ggcttgtaaa cgtacggccc attccaacca cttatcctgc gacatgacgt
     4021 tccctccatt ctatgacagc ttgcgcatgg atatgcccat ctaccacaat ctcatgctga
     4081 ctaccaccag cttctgccac catacgcgaa ctcaccaagc tagttgcctc tacctcttta
     4141 agatacttga gttgtatttt tttagggaca tggcagagca gaaaatcata gcccagtgct
     4201 tcatacatcc attccaaata cttgccatta ttgacatgcc cattcatatc caagtcaaaa
     4261 tagcgaacag gaaattcttg gacagatgga ttttccaaga gctgatactt gggagcccga
     4321 ggcaatttct tgacctgctc agactgataa ggagcaatca aatcttctgg cacaggcgcc
     4381 accttgcgag tttcaaaatc aatcaggaca aaatagcaga gaatgtccaa caaaagattg
     4441 cctgctgcat cgtagatata gaacatccga tgacagaaaa acttgttgta ggcaaccgct
     4501 tctgtcttaa tggtaatggt ttcattgtac ttaggtaaac gttgaatggt cagttcataa
     4561 tctgtcacca cccaaatcaa gccaaattcc tgaaaaacat agaggtcact gcgacccagt
     4621 tcttccgact gccgacctga tacaccaaga cagtaggaaa taaagtcagg tagtttgatt
     4681 tcttgtttga catccaccat atcaaaagga atggtgaact cttcttggta tgttagtccc
     4741 ataatgttga tctttctagt cttaaagtat agtctttcag ttcacgtcaa cagctgcagg
     4801 tagcttcaat agtccagtgg actattgaag gttggaaatc gtacttacga tagtaagtaa
     4861 cattcgtaga gtacggcaaa gtgagttcaa atactccagt ggagtgtttg aagttggaaa
     4921 taaggaaacg aagtttcttc gctcgtcgaa gtaataaaaa caaactgaat gactatatga
     4981 aacgctctgc aactgtatcg cccagaaaca accccttttt agtcatccga agccaacggt
     5041 cttcttcttg caaaagacct tcatttttca agtctctgac cacctgaccg tagcggtctt
     5101 caaaggaaat gccaaacttt tcctcgaatc gctcaatgga cacgccagtt tttttccgta
     5161 gccctaaaaa catctcttct tccatctgct cggtctggct gaggaattct tcgtgtaagc
     5221 gagaatggcc tttttcgcgg atggacttga ggtagtgctg aatggggccg cggttgcgat
     5281 agcgcatgcc gtcgatgtag ccagatgctc cagctcctag accataatac tccgagttgt
     5341 cccagtacat gagattgtgg cggctttcaa agccgggctt ggtgaagttg gagatttcgt
     5401 agtgctcaaa gccgtttttc tccaactcct gaagaatgta gtcgaacata tcggactcca
     5461 catcttcgtt gggtagatga agattgccac ggcgttggcg gttcatgaag accgtatggt
     5521 tctccaaaat caagctatag aggctcatgt ggggaatgtc cagctccaag gccttggcga
     5581 cattatcgac cacctgctcc atggtctgac caggcagggc ataaatcagg tcgatggaaa
     5641 tattgtaaaa tcctgcttcc ttgagggtag caatggtttc ataaatctgg gcctgattgt
     5701 ggctgcgacc gatttttttc aacatgcggt cgtcaaaggt ctgaacgccc agcgataccc
     5761 gattgcactt ggattttttc agaactgcaa tcttgtctgc cgtcaagtca cctggattgg
     5821 cctctatagt gaattcttcc agctgtgaca agtccagcag gtcctccaga ttggtcagga
     5881 gataatctag ctggtctgcc gagagagctg acggtgttcc gcctccaata taaagtgtgc
     5941 ggagagctgg caggtcgtaa aacttgacct cttccataag agctgccaaa tactcgtcaa
     6001 caggctgatt cttaataaag accttggaaa aatcacagta gtaacaaatc tgggtacaaa
     6061 atggaatgtg gatataggca gatgtcggtc gttttttcat accaactatt atagcacact
     6121 gtctataaaa atattttcta cagccttgac ctcccctcaa ataatgatat aatgaaataa
     6181 aaaggagatc ctctatgaaa aaagagatta tctacgactg tattaacctg atcctgtcat
     6241 ttctgctttg ccgctggctc ttcatgacct ttctttttta ccaattttca aacattttca
     6301 tgacgattga tttttggccg acacttgccg caatcctgtt aatgaccgga ttttgcttta
     6361 ccctatttcg acttgtctat aaaccccaca tttcgcgact gacactttgg tttttctacg
     6421 cttgctacgg gcttctgcta gtctatcttc tctttttcaa aagcatgggc gtcagaggtg
     6481 tcaactggaa tctccttagc actttttctc aagacctatt tctcaatcct actatattgg
     6541 tttttaacct cttactcttt ttaccacttg ggttgctttt ttcattttct tggaaaaaac
     6601 tttctctctt tgtaggggcc atattgctag ttgaagcctg tcaattcttc ttttcactgg
     6661 gcttctttga ccttggtgac atcttgctta acacttctgg ctttgccctt ggaaacttct
     6721 tgggacaatc cgcaatcgct caatctttta aaaatagaat acagaaaaaa tgaccccgca
     6781 aggtcatttt tagtttattt atactcaatg aaaatcaaaa gtagcctagg aaacgaagcc
     6841 gacgatagaa ctgaagttca tctaggctct tgacaacgga taattttgat tttcgaagag
     6901 tattagctta cttagcttcc aaatgccaaa tatcttcatt gtactgttga atcgtacggt
     6961 ctgatgagaa gaaacctgct ttagcgatgt tgacgatgac tttttccaac cagctgtcgc
     7021 ggtcttcata gtcagccaac attctttcct tagtcacaat atagtcttcc aaatctagca
     7081 aggtcatgaa gtggtcattg tgcttgaggt tgtcctgcaa acgccagaga cgctcatcga
     7141 tcccaccagc atgacgaatg gtatctgatg taataaagtc aatcaatgga cgaatgactt
     7201 cacgttcgta gaaggaatat ggatggtagg tcctatttgc atagtgttcg ataactgttt
     7261 ggctatcttg accaaagata taaatatttt catcacctac caactcatga atttccacat
     7321 tggccccatc atctgtaccg atggtcaagg ctccattgag catgaatttc atgttacctg
     7381 taccagatgc ttccttagat gcaagtgaaa tttgctcaga aatatccgct gctggaatga
     7441 taaagctagc ttcggttacg ttgtagttct caatcataac tagctgcaaa tgtggtgcca
     7501 cttctgaatc atttttgata acctgtgata agactagaat caagtggatg atgtcttgag
     7561 ctgttgtata ggctggagct gcttttcctc caaagaagac tgttaacggg cgagtcggga
     7621 tattgcccgc cttgatatcc aaatacttat ggataacata gaggacattc atctgttgac
     7681 gcttgtactc gtgcatgcgc ttgatttgta catcaaagat ggattcagga ttgacatgta
     7741 caccttgagt tttggcaata tgacgttgca acttccgctt gttgtgttgc tttgtctttt
     7801 ccaaccaaga tttcaattcc ttatcatttt tgtaatccaa cagcttttct agttcacttg
     7861 catcgtgatg gtagccatgt ccaagtaggc cgtccaggta gcttgccaaa cttggattag
     7921 catgcatgag ccagcgacgg aaggtaatcc catttgtctt attattgaat ttttcaggat
     7981 atagctcata gaaagctttc aactctgaag ttttcaaaat ctctgtatga agtgccgcca
     8041 ccccattgat agaataacca taatgaatat ccatgtgtgc catgtgaaca cggccatatt
     8101 catcgatgat attgacagca ggatcatcct tcacttcttt ggcacgacga tccaattcta
     8161 cgatgaacgg taccaagtgc ggaaccacat agttcagaaa atcaagcggc catttttcca
     8221 gcgcctctga caagatggtg tggttggtat aagcagtcat tttcttaaca atttcaactg
     8281 cctcatcaaa tgaaatacca cgaagctcca aaaggcgaat caattctgga ataacaagtg
     8341 atgggtgagt atcgttgatt tgaacaacag cataatcagg caggtcatgt aagtttgacc
     8401 ccttagcaac tgcttcgtca atcaatagtt gcgcagcgtt agacaccatg aaatactgct
     8461 ggaagatgcg gagaactttt ccttcatcgg tcgaatcatc tggatagagg aagagggtca
     8521 agtttcggaa aatatcttcc ttatcaaatt ctattccgtc ataaatgata ttgtcatcaa
     8581 ctgaaccaag gtcaaacaag cgaagacgat tcttacgctc cattttataa ccaggtacat
     8641 cgatgtcata caacttagat gtcaaggtaa agttagcaaa tggcacctga taagaaatcg
     8701 gtgactctgt taaccatgaa cgtggtgtaa tccactcgtt tggcacagca gactgctgat
     8761 ggtattcaaa taattgtcta aacagtccaa agtgataatt caagccgacc ccatcaccgt
     8821 taagacctag actagcaatt gaatcaagga agcaggcagc caagcgcccc aaacctccat
     8881 taccaagaga cggttcaagc tccatgtctt caatagcaat caaatcctta ccagccgcca
     8941 ccaactggct tttaacctca tcataaagac caaggttgat taaattatta gacaagagct
     9001 taccaattaa gaactctgct gaaatatagt agaccttttt cttttggtca tttgtatact
     9061 tagcttcact ctgctgtttt gtaaaagcaa gcaaggcata atagagttct tggtctgtac
     9121 aatcttcaat gcgtttggca tacatagact gaacaaaatt ttgtaaatta atcatgagga
     9181 ctctcctaga tatattaatg taatcattca gaaaggtttc gctttgcctt tgtaaacgtt
     9241 ttcttaatta taccctattt ataaaaaaaa gacaagccaa cttccgtaca aatagaaatt
     9301 agttcgtctt ttaaacgatt gcaggttact acaatcagaa ttattcttaa ttattctgca
     9361 atcagagttt ccaaaccaac tttcatcata tccgtgaaag tattttgacg ctcttctgct
     9421 gtggtgtttt cctctggatt aaccaagcta tctgaaatcg tcataatggc aagcgtttga
     9481 acgccaaact tagcacctag gtaataaagt gcagctgctt ccatttctac agccttgaca
     9541 cctagttgac ctaattctaa gttgcgacta aacaattttg gagaatagaa actatctgat
     9601 gataaaacat tgccaacatg cgttgtcatg ttgagttctt tggcgatatg ataagcctta
     9661 tctaaaagat caaaatcagc gatttgtggc aaatcgtact ctggccagtc aatattaatc
     9721 atgcgagagt tggtcgcggc tgcttgcgcc aaaaccaatt cacggacatg gacatcctca
     9781 ttcaaagaac ctgctgttcc cacacgaatt agttttttca caccatattc gttaatcaat
     9841 tcatgagcat agatagagat ggatggcatt cccatacctg ttcccatgac agaaacacgg
     9901 tgacctttgt aagtaccagt atagccaaac atattgcgga cttcattgaa gcaaactgcg
     9961 tcttcaagaa aattttcagc gataaattta gcacgaagcg gatcaccagg aagcaaaatc
    10021 ttatcagcga tttcgcctgg ttttgcggaa atatggatag acatgtaatg tacctctttg
    10081 ttctattttc gaatgcttac aactcagcca agatagcttt caccaagcct ttgaagttgc
    10141 ccttgatttg ctcggttact tctacaactt cttcgtgatt gagttcagat tggaaaccag
    10201 ctgcaaagtt tgtgatagca gaaataccca agactttcat acctgagtga gctgccacga
    10261 taacttctgg tactgttgac ataccgactg cgtgggcacc catagtcttg aaggccaaga
    10321 tttcagcagg tgtttcatag gtagggcctg tcacaccgag atagacacca tcgtccaact
    10381 tgatacccaa tttttccgca acggcatggg ctttttcacg gtattcttta gtgtaggcat
    10441 tggacatatc tgggaaacgt ggaccaaatt cttccaagtt ttcgccaatc aatggatttt
    10501 ggccagtcat gttgatgtgg tctgtaatgg ccataagggt acctggaccg tagccaatac
    10561 cacccgcggc atttgttaca atcacgcctt cacaaccaag agctttcatg acacggactg
    10621 ggaaggtcac gacctccata ggattgcctt cgtagaagtg gaatcgacct tgaagagcta
    10681 agaccttacg tcctgccaaa tcaccgtaca ccaacttacc agcatgacca acaactgttg
    10741 acttacccca gtttggaata tctgcatagt caatgacaat ggcattttca acttcttggg
    10801 ccaattcacc caagccagaa cccaaaatca aaccgaattc aggttttacc aaaccttttt
    10861 cttccaagaa cgtttttgtt tcattgattt ttgcaagtaa actcatattt tctcctttta
    10921 taaataatcc gaccagtcat attctggcat tttttcttta atgatttcaa gcggacgaca
    10981 gaggaaggct gtctgctctc gctcgataat ggggcggttg agaagagcag gctctttaac
    11041 taaacgctca aagatttctt cttctggcaa ggctagtcgt tcttcctcct tcaatcgagt
    11101 aactgctgaa ggttgactgc ccattttttc caagagagct gtcaattcag ctccccttaa
    11161 tggcgtttcc aaataattaa cccacttgac ttccatatcc tgactgggca gcaatattct
    11221 taatttttta cacttgctac agtcaggatt gtaatagaca gttagcttct ccattaaacc
    11281 aactgtgata agaagctttc accaatcatg gctgtgtcca ctccgaagtt ttccgcaacg
    11341 gttgctgaaa tgtccgcaaa atggcctact ggcaagacac cgctaccttt gaaaaccttg
    11401 ctgtatgcta agagtggcac atattcgcgt gtgtgatctg ttccagcata ggatggatca
    11461 tttccgtggt cagctgtaat caagagcaaa tcatcttcac gcatattgtc aataatctct
    11521 ggaatacgtg catcaaactc ttgcaaacaa tcgcggtagc cttcgatatt gcgacggtga
    11581 ccatacacag catcaaagtc aactaagttt gtgaaggaga aaccttcctc gaagtctgat
    11641 aacttcagag tatcaatcaa cacatcgaca ccgtgcatgt tggacttggt gtgacccata
    11701 tcatttgtaa tacctgaacc attgaaaata tcactgattt taccaactga gtaagttggt
    11761 acacccgcat ctgccagttt gttgagtact gtttcttcaa acggtgatac tgcatagtca
    11821 tgacgatttg cagtccgtga gaaattgcct ggctcaccaa cgtatggacg ggcaataatc
    11881 cgaccaagaa gagctgggcg ttcaagggta atggaacgag cgtattcaca gatacgatac
    11941 aactcatcaa gtggaataat atcttcgtgg gctgcaatct gaaggactgg gtctgcggag
    12001 gtatagacga ttaactcccc agtttccatt tggcgagggc caaagtcatc aatgacagct
    12061 gtacctgaat acggcttgtt tgcttcgcgg atgattttac gacctgagaa ttcttcgatt
    12121 tttgtcaaaa tctcttcagg gaaaccatcc cagaatgtat caaatggctc agtaatattg
    12181 agacccataa tttcccagtg tccagtcatg gtatccttac caagcgatac ttcttccaac
    12241 ttggtcacgt aaccagttgg atggctttca gcaggaactg tcgcaagtgc tgtatctcga
    12301 gggatatttc caagaccaat cttggtcata ttaggcacct caagcccagc tttttcagaa
    12361 atgtgaccga gagtatcaga ttctgtatct gctacacccg cattgaaaaa cttatctgag
    12421 tctggtgctg cgccgattcc gacagagtcc ataactacca agtgaacacg tttaaattta
    12481 ggcataattg tctcctttat ttgatatagt tagattcaac caaaatcagc gtccaaccaa
    12541 gttgctagac tggaaattat catcaccata tctaaacatt ttaatggggt gcaatactta
    12601 tacagtcaaa gctctcggca tcaaacttcc taaccatcaa aactagatac tgttactcgc
    12661 ttcactgcct gctgttcagc tatcactttt tcagtatcta tcatctgact gctacgaggt
    12721 aaggggatag atttttgaag agtctaaacg ttcgtgtttt cattatacca taaaaaagcc
    12781 tctcattgta ccaaaatgag aagcgttttc aatttatttc ttttcgatga tgttcggtcc
    12841 ttctggtgta ccaacaatta ccttggaaat caatccaata aagagaccgt gttctacaac
    12901 accgacggtc cgatccaatt cttccgccaa tgcatatgtg tcttctattc tgcgcaaatc
    12961 aaggtcaatg ataaagttct gcatatccgt gatatgtttt tctccattac gcatacgaaa
    13021 acttggacga tacccttttt tctcaaatag tcggaaaaga ttttccgcac cgtactgtac
    13081 aacttccacc ggcaacttga aggctcctag ggtttgaacc accttagact catccacaat
    13141 ccagatgcag tccttgctat tgactgctac cactttctcc atgagaagcg ctgcgccacc
    13201 gcctttaatc ccattgaagt caccatcaac ctcatctgct ccatccaccg tcaagtccac
    13261 atattcgact tcgtcgatat tttttagggg aatcccaagg gacgcagcat gttctgccgt
    13321 agcatgagag gtcgttacgc ctgtgatttg taacccttct tctgcaaccc ggcggccaat
    13381 ctcctgcacg aaatagtatg ccgtcgaacc agtccccagc ccaacaatca taccgtccgt
    13441 cacaaactcc gccgccttaa tcccaacctg ctcttttagg tttgtcatct ttgtctcctt
    13501 ttaaaaaact gatacaacta ttatagcatg aagcaagcaa gacaaaacaa gaattttaga
    13561 aaattgtggg ggagatgtac tatcgcttat gattacgata atataaatct tgagagtaca
    13621 aaaactacaa atgttatggg gataactacc agaaggtttt actgttactt aaatcttgag
    13681 agtacaaaaa cggtctcaat ggcaacctgg tcttcttctt tgttttactg ttacttaaat
    13741 cttgagagta caaaaacaca tcatttgttt atcgggaccc aaccaatgtt ttactgttac
    13801 ttaaatcttg agagtacaaa aacttagaat attctcagca agtaaacact gatgttttac
    13861 tgttacttaa atcttgagag tacaaaaaca gtgtgaaaaa gtcatataca cgacttcccg
    13921 ttttactgtt acttaaatct tgagagtaca aaaaccgaac ctatgaaata tacgtcacgt
    13981 attgagtttt actgttactt aaatcttgag agtacaaaaa ctcatctgtt tcttcttttt
    14041 cattttctaa agttttactg ttacttaaat cttgagagta caaaaactgg tgctgttggc
    14101 actggctcaa ttcgtgagtt ttactgttac ttaaatcttg agagtacaaa aacagcaggc
    14161 agatgttgct cagatcgtca ttggttttac tgttacttaa atcttgagag tacaaaaacg
    14221 gtctcaatgg ca
//
LOCUS       DASGCC010000054        13895 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.054, whole genome shotgun sequence.
ACCESSION   DASGCC010000054 DASGCC010000000
VERSION     DASGCC010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13895
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.054"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            146..2140
                     /gene="treP"
                     /locus_tag="U1404_001090"
     CDS             146..2140
                     /gene="treP"
                     /locus_tag="U1404_001090"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HEM5348052.1"
                     /translation="MGKFEKEAKQLLEAIGGKENVNAVTHCATRMRFVLADEKKANVK
                     VIEDIPAVKGTFTNAGQFQVIIGNDIPIFYNDFTAVSGIEGVSKEAAKSAAKSNQNAI
                     QRVMTMLAEIFTPIIPALIVGGLILGFRNVLEGVQMEWLGQAMKDGQLVFDADGNPVW
                     NTIVQVSPFWNGVNHFLWLPGEAIFHFLPVGITWSVSRKMGTSQILGIVLGICLVSPQ
                     LLNAYAVPGTDAATIASDWSWNFGAFSIARIGYQAQVIPALLAGLALSYLEIFWRKVV
                     PEVVSMIFVPFLSLLPAIILAHTVLGPIGWTIGQWLSTVVLAGLTGPLKWLFGAIFGA
                     LYAPFVITGLHHMTNAIDTQLIADAGGTGLWPMIALSNIAQGSAVFAYFLMNRHNEKE
                     AQVSLPATISAYLGVTEPALFGVNVKYVYPFVAAMIGSSIAGLLSVTFNIQAASIGIG
                     GLPGILSIKAEYWGAFFMTMIVAIVVPMILTAVFKRTGAFSKKEETVEEVVAPTEAVV
                     ETGAAIELISPLTGQTKELSQATDPVFASGVMGQGVLIDPTEGLLVAPVDGEISVLFP
                     TNHAVGITATNGVEFLMHIGMDTVGLEGKGFTAHVKQGDKVKAGDKLISFDIDVIKAA
                     GLVAETPVIVTNQTDFDTQVIGNLPRAISQGEAILTVTKN"
     gene            2221..3846
                     /gene="treC"
                     /locus_tag="U1404_001091"
     CDS             2221..3846
                     /gene="treC"
                     /locus_tag="U1404_001091"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HEM5348053.1"
                     /translation="MTIDKRKVVYQIYPKSYKDTTGNGVGDLRGIIEKLPYLKELGID
                     MIWLNPFYPSPQRDNGYDISDYTAVNPDFGTMADFEDMVAVGKELGIEFMLDMVLNHC
                     STDHEWFQKALAGDKYYQDFFILRDQPTDWVSKFGGNAWAPFGDTGKYYLHLFDVTQA
                     DLNWRNPHVREELFKVVNFWKDKGVKGFRFDVINLIGKDEVLEDCPINDGKPAYTDRP
                     ITHDYLKMMNNATFGSEKGFMTVGEMSATTIENCILYTAPEREELSMAFNFHHLKVDY
                     KDGQKWTIMDFDFEELKRLFHTWGEEMSAGNGWNALFYNNHDQPRALNRFVDVENFRN
                     EGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMDDYVDVESINAYQMLLDQGHTPE
                     QAFKIIQAKSRDNSRTPMQWDSSDNAGFSTGAPWLKAGKSYPTINVEQEKTGPIFTFY
                     QELIRLRKELPLISEGDYKAAYNDSQKVYAFERLLNGEKLLVLNNFFAEEVELDLADD
                     YAHGQVLISNYPDNKLGKKIILKPYQALAIQVK"
     gene            complement(4260..5384)
                     /locus_tag="U1404_001092"
     CDS             complement(4260..5384)
                     /locus_tag="U1404_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5348054.1"
                     /translation="MKRKRTNKPQHMRRKRKTPIMKNNKKMLYTSSLALSLFSTGMIS
                     TNVLAIEWAPRTVSEISPEIVQEEGKMTYTVQYGDTLSAIASAMNIDMDLLAKINQIA
                     DVNLIFPDTVLTTTVDLTTNQVTQVEIEAPVQGNTNETVQATVDLTTNQVTVEDTVVP
                     LDQISSVTDSAPVEEVVEQPVAEASVEEVVEQPVAEASVEEVVEQPVVEAPVEEVVEQ
                     PVVEAPVEEVAEQPVVEAPVEQPVVETPQVTALSTTTTSTSAYDVGLQPQVAAFRAEV
                     ANAFGITSFSGYRPGDSGDHGKGLAIDFMVPQSSALGDQVAAYAVVNLASKNINYIIW
                     KQRFYAPYDSIYGPAYTWNLMPDRGSVTENHYDHVHVSFN"
     gene            complement(5727..6710)
                     /locus_tag="U1404_001093"
     CDS             complement(5727..6710)
                     /locus_tag="U1404_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM5348055.1"
                     /translation="MEVQMKYKWATLGTGVIANELVQALQDMGGNLYSVANRTYDKGV
                     EFAQKYGIEKVYREIDEVFEDPEVDIIYISTPHNTHINYLRKALKAGKHVLCEKSITL
                     NSEELAEAIQLAEENQVVLAEAMTIFHMPIYRQLSEVIASGKLGDLKMIQMNFGSYKE
                     YDMTNRFFNKNLAGGALLDIGVYALSFVRWFMTEKPNQVLSQVKLAPTGVDEQVGILL
                     SNDAGEMATTALTLHAKQPKRGTIAYDKGYIELYEYPRGQKAVITYTEDGSQEVIEAG
                     ETARALSYEVADMEKAVAGIENTMHLAFTQDVMEIMTQLRKEWGLVYPEEM"
     gene            6795..7685
                     /locus_tag="U1404_001094"
     CDS             6795..7685
                     /locus_tag="U1404_001094"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000146880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HEM5348056.1"
                     /translation="MNTVVLKASAQQKQAMMAHYDRYRQTSKNPYIEAFFKLTGASLS
                     IYTSGKVVFQGEMAEQEAGLWGYEPESSGQTTIPGQNLPMIGTDEVGNGSYFGGLAVV
                     ASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIPHQALLLSPKKYNEVIEQG
                     YNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKYLKKEANQFANPVTLEE
                     KAEGKYLAVAVSSIIARAMFLENLVQLGQLVGMNLPSGAGSKSDQVAASILKQYGMAG
                     LNQTAKLHFANTQKAQKLLK"
     gene            7695..8324
                     /gene="lepB"
                     /locus_tag="U1404_001095"
     CDS             7695..8324
                     /gene="lepB"
                     /locus_tag="U1404_001095"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5348057.1"
                     /translation="MGAIQKTKRSPLVAFLAEWGIFLLFMAAFFASRYFIWNPVSVDG
                     HSMDPTLQHQEKLIMLKTTSIDRFDIVVASETDSDGKEKLIVKRVIGMPGDTIRYEND
                     VLYVNDQKVDEPYLDEYLAAFQKDKLQEVYSYNKQFQAVAQSAEAFTQDANGYVDFTV
                     TVPEGQYYLMGDDRLVSLDSRSVGTFSRENIKGEVVFRMWPLNRIGTVD"
     gene            8388..10877
                     /locus_tag="U1404_001096"
     CDS             8388..10877
                     /locus_tag="U1404_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HEM5348058.1"
                     /translation="MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVT
                     GTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERSKPTSAGLVKYFSSEHFKGIGRK
                     TAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
                     GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRF
                     RAGMLFSLIHRSMETGDTYVEARDLLEATLELLEKSRHTELDPAAVAKELTGLIADDK
                     VQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAAIAELESISSLTYDN
                     IQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAP
                     TGRAARRMNELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQ
                     LFQNISSQTQVLIVGDAEQLPSVSPGQVLADLLKIDKLPSITLERIYRQSDDSTIVTL
                     ASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQILAPMY
                     RGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGY
                     ITDLLPAKYTDSKQDEITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILP
                     ITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAVKNAGTVRKTYLVPRFQGEMA
                     EQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPKKTSPQ
                     PTEYILTVDNLLTIDPMIGIEQADIEEFFKA"
     gene            complement(10916..11857)
                     /locus_tag="U1404_001097"
     CDS             complement(10916..11857)
                     /locus_tag="U1404_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEM5348059.1"
                     /translation="MFSLSITISVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSG
                     QTIKTLQGVNTIVFDKTGTITEGKPQVTDIHLLSTKNREQVLQLAASSEQYSEHPLAQ
                     ALLRSAEEESIPLLASQDFQALSGRGLSVTIAEQTIYLGNERLMREQGIDVSKGRAVA
                     ETFAHQAKTPVFLASQQEVLAVIAIADKVKETSRQAVQALQTMELEVVMLTGDNEKTA
                     QAIAKEVGIEQVVSQVLPDDKANQVKFLQEQGKTVAMVGDYDHAFGKSYGVLMREWNL
                     LARAVFVLNADNEIVYVEYLDNVNEHPDYKAALEAVK"
     gene            complement(11914..12661)
                     /locus_tag="U1404_001098"
                     /pseudo
     CDS             complement(11914..12661)
                     /locus_tag="U1404_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636211.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
     gene            complement(12810..12989)
                     /locus_tag="U1404_001099"
     CDS             complement(12810..12989)
                     /locus_tag="U1404_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5348060.1"
                     /translation="MKQASYPIQGVTCASCAMTVEKALNKLDGIQNASVNLATEKTNI
                     QYDPAHLSLSDIDSC"
     gene            complement(13150..>13895)
                     /locus_tag="U1404_001100"
     CDS             complement(13150..>13895)
                     /locus_tag="U1404_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucosamine-6-phosphate isomerase"
                     /protein_id="HEM5348061.1"
                     /translation="KKNNEEIFISLALEMVELIKENNEKNEKTVIICPVGPVGQYPHF
                     VRLVNQFKIDLSNVWFINMDEYLLEDLHWIDVVHPLSFRGFMQKNVYSQIHPTLIMSE
                     EQRIFPDPLDIDSISNKIKELGKIDLCIGGIGLNGHIAFNEPDSTLTVQEFLKLGSRV
                     LPISVETKVMNGLTVLKGAVEEVPNYCVTIGMSEIFQAKKIRLAVFRDWHHAVIRKTV
                     CSKPDTGFPSTLMQIHTNCSIYLNESLAN"
BASE COUNT         3921 a         3285 c         2869 g         3820 t
ORIGIN      
        1 aacgcttgca ttattttttg aaatcggata caatgataac acaaaagaaa tttgtccgta
       61 caaatttcaa aaaagacata cttttgggag atgtctaaaa aatatagggt gacggattcc
      121 ataagccgtc tagaaggaaa aatatatggg aaaatttgaa aaagaagcca aacagctcct
      181 agaagctatt ggcggaaaag agaatgtcaa tgcagtaaca cactgtgcaa cacgcatgcg
      241 ctttgttctt gcagatgaga aaaaagcaaa cgtaaaagtc attgaagaca ttccagcagt
      301 aaaaggaaca tttacaaacg caggtcaatt ccaagtcatc atcggtaacg atataccaat
      361 cttctacaat gactttacag ctgtgtctgg tatcgaaggc gtatcaaaag aagctgcaaa
      421 gtcagccgct aaaagtaacc aaaatgccat ccaacgtgtc atgaccatgc tggcggaaat
      481 cttcacaccg atcattcctg cccttatcgt cggcggtttg attctcggtt tccgtaacgt
      541 cttggaaggt gttcagatgg aatggcttgg acaagctatg aaagatgggc agttggtctt
      601 cgatgctgat ggtaaccctg tatggaacac catcgttcag gtttctcctt tctggaatgg
      661 tgtcaatcac ttcctctggt tgccaggtga agccatcttc cacttcttgc cagtaggtat
      721 cacttggtcc gtatctcgta aaatgggaac ttcacaaatc cttggtatcg tccttggtat
      781 ctgtttggtt tctccacagt tgctcaacgc ttatgctgta cctggtacag atgcagcaac
      841 cattgccagc gactggtctt ggaacttcgg tgcatttagt attgcccgta tcggttatca
      901 agcacaagtt atccctgccc tccttgctgg tttggcactg tcttacctag aaatcttctg
      961 gcgtaaggtt gttccagaag tggtctcaat gattttcgta ccattcctat cacttcttcc
     1021 agcaattatc ttggctcaca ctgtccttgg tcctatcggt tggacaatcg ggcaatggtt
     1081 gtcaacagtt gtattagctg gtttgactgg tccattgaaa tggctcttcg gtgcgatatt
     1141 cggtgccctc tatgcaccat tcgttatcac tggtcttcac cacatgacaa atgccatcga
     1201 tacacaattg attgcggatg ctggtggaac tggtctctgg ccaatgattg ccctttctaa
     1261 cattgctcaa ggttcagcag tatttgccta cttcctcatg aaccgtcaca atgaaaaaga
     1321 agcgcaagtt tctcttcctg caactatttc tgcttatctt ggtgttactg aaccagccct
     1381 ctttggtgtc aacgtgaaat acgtttaccc attcgtagct gctatgattg gttcaagtat
     1441 cgcaggctta ctctctgtaa ccttcaacat ccaagcagct tctatcggta tcggtggtct
     1501 tccaggtatc ttgtctatca aagctgaata ctggggtgca ttctttatga caatgattgt
     1561 tgcgattgtt gtcccaatga ttttgacagc tgttttcaaa cgtacaggtg cattttcaaa
     1621 aaaagaagaa actgttgaag aagttgtagc tccaactgaa gcagttgttg aaactggcgc
     1681 tgctatcgaa ttgattagcc cacttactgg tcaaaccaaa gaattgtcac aagctactga
     1741 ccctgtattt gcatcaggtg tcatgggcca aggtgtcctt attgacccaa cggaaggtct
     1801 tctggtagca cctgttgacg gagaaatttc tgtcctcttt ccaactaacc atgctgttgg
     1861 tatcactgct acaaacggag ttgagttcct tatgcacatt ggtatggata ctgttggatt
     1921 ggaaggtaaa ggctttacag cccatgtcaa acaaggtgac aaggttaaag caggtgacaa
     1981 attgattagc tttgacatcg atgtcatcaa ggctgctggt ctcgtcgcgg aaacaccagt
     2041 tatcgtgacc aaccaaactg actttgacac tcaagttatc ggaaatcttc ctcgtgccat
     2101 ctcgcaaggc gaagctattc tgacagttac aaagaattaa tgttctagga gggcgcaagg
     2161 taacttgcac ctcctatcat tgcttatgca agaaggaaaa atcaagaaag agagagcaaa
     2221 atgacaatag acaaacgaaa ggttgtttat caaatctacc caaaatctta caaggataca
     2281 actggaaatg gtgtagggga tctgcgtggg attattgaaa aacttccata tctaaaagag
     2341 ctaggcattg atatgatttg gctcaaccct ttctacccaa gtcctcaacg ggacaacggc
     2401 tatgacattt ctgactatac agctgtcaat cctgactttg gcaccatggc tgactttgaa
     2461 gacatggtgg ctgtcggcaa agagctaggt atcgaattca tgctagacat ggtcctcaac
     2521 cactgctcga cagaccacga gtggttccaa aaggccctag ctggcgacaa atactaccag
     2581 gatttcttta tcctgcgtga ccagccaact gactgggttt ccaagttcgg cggcaatgcc
     2641 tgggcaccct ttggcgacac cgggaaatat tacctccacc tctttgatgt gacccaagcc
     2701 gacctcaatt ggcgaaatcc gcatgtccgc gaagaactct tcaaggtggt caacttctgg
     2761 aaagacaagg gtgtcaaggg cttccgcttc gatgttatca accttatcgg caaggatgaa
     2821 gtcctagaag attgcccaat caacgatggc aaaccagcct acaccgaccg tccgattacc
     2881 cacgactacc tcaagatgat gaacaatgct acttttggta gcgaaaaagg cttcatgacc
     2941 gttggggaaa tgtctgccac caccattgaa aactgcattc tctacacagc tcctgagcgg
     3001 gaagaattgt ccatggcctt caacttccat cacttgaaag tggactacaa ggacggtcaa
     3061 aaatggacca ttatggactt tgactttgag gaactcaaac gcctcttcca cacttggggc
     3121 gaggagatgt cagctggtaa tggctggaat gccttgttct acaacaacca cgaccaacct
     3181 cgtgccctca atcgctttgt tgatgtagag aatttccgaa acgaaggagc aaccatgctg
     3241 gccgcttcta tccacctgtc acgcggaacc ccttacatct acatgggcga ggaaatcggc
     3301 atgattgacc ccgactacga tagcatggac gactatgtcg atgtggagtc tatcaatgcc
     3361 taccagatgc tcttggacca aggtcacacg cctgagcagg ccttcaagat tatccaggcc
     3421 aagtcccgtg acaattcccg caccccgatg caatgggact cttctgacaa tgcaggcttc
     3481 tcaacaggcg ccccttggct aaaggctggc aaatcctatc caaccattaa cgttgaacag
     3541 gaaaaaacag gcccaatctt caccttttac caagaactca tccgtctgcg taaagaactg
     3601 ccactcatct cagaaggaga ttacaaggcg gcctataacg acagccagaa agtctatgcc
     3661 tttgagcgtt tactaaacgg tgaaaaatta ctggtcctca acaatttctt tgcagaagag
     3721 gttgaactag atctggcaga cgactatgcc cacggccaag tcctcatcag caactatcct
     3781 gacaacaaac taggcaaaaa aatcattctc aaaccttacc aagcattggc aattcaagtt
     3841 aaataaacga taaaacatcc gaaaataaca ctctacatgt caattttaat tttcctaaaa
     3901 ttagaccctg ccttcacagc tcagtaggtt acttgtgaag gcaagttctt ggtttaaggt
     3961 ttcttttagg aatatatttt atactgtaat ttgcgcacga aacagctatc tggggggaga
     4021 tagttgtttc tttttttata gtcatttgaa ttaactttgg tacatcgcca ctttcggctt
     4081 gccatactct acgaaagtga cttgtttcgc aagtcttatt ttcaacctag aacagcctct
     4141 aggctgttct agctacctgc acctcagttc cttgtctgaa agttcattca ttcgactata
     4201 ttactacata taaagcaata accgtttcag ataaggctga aacggttatt tttgtaagtc
     4261 taattaaaag atacatgcac atgatcgtag tggttttctg taacgctacc acggtctggc
     4321 atcagattcc atgtataggc tggaccatag atactgtcat acggcgcata gaagcgctgt
     4381 ttccaaatga tgtagttgat atttttagaa gctaagttta caactgcata agccgccact
     4441 tgatccccaa gtgctgaact ttgtggtacc atgaagtcaa ttgccaatcc cttaccatgg
     4501 tcgccagaat caccaggacg gtaacctgag aaagaagtaa taccgaaggc attagctact
     4561 tctgcgcgga aggctgctac ctgaggttgc aaaccgacat cataagcact tgtacttgtt
     4621 gtagtggttg atagggctgt cacttgtgga gtttcaacta caggctgttc tacaggtgct
     4681 tctacgacag gttgttctgc aacttcctct acaggtgcct caaccacagg ttgctctaca
     4741 acttcctcta caggcgcttc tactacaggt tgctctacaa cttcctctac agacgcttct
     4801 gctacaggct gttctacaac ttcctctaca gacgcttctg ctacaggttg ctccacaact
     4861 tcctctacag gtgctgagtc ggtaactgat gaaatttgat ccaacggaac aaccgtatcc
     4921 tcaaccgtta cttgattggt tgttaggtca acagttgcct gaacggtctc atttgtgttt
     4981 ccctgaacag gagcttcaat ctcaacctga gtcacttgat tggttgttag gtcaacagtc
     5041 gtcgtcagta ccgtatcagg gaaaatcaag ttgacatctg caatttgatt tattttcgcc
     5101 agcaagtcca tatcaatatt catagctgag gcgatggcag ataaggtatc tccatactga
     5161 acagtatagg tcatctttcc ttcttcttgt acaatttctg ggctaatttc agaaacagta
     5221 cgtggagccc attcgatggc taaaacattt gtcgaaatca tccctgtact aaagagggaa
     5281 agagccaatg aagatgtgta taacatcttc ttattgtttt tcatgatggg tgtttttctc
     5341 ttgcgacgca tatgttgtgg tttatttgtt ctcttacgtt tcataatctt attccttctt
     5401 tatttttgag atggttctat cttacctaaa ttaaatctga aaaacaagcc ttcaaccttt
     5461 cttttaaata aactgtctcc actatgtaat cttaggactt ttctgtcaca caatcaatat
     5521 aaatgtcatc tgactgtcat attattagat aatactcaat gaaaatcaaa aacagactcg
     5581 gagatgcaga tagaactaac gttcaccaaa tcaagtcaac aacgtctgga ttttcgaaga
     5641 ctataattaa aaaataagag taaggcagta atccaacaat tggctactag ctcactctca
     5701 tttctatttt cggattagtc aagatcctac atttcttcag gataaaccaa gccccattct
     5761 ttacggagtt gggtcataat ctccataaca tcttgggtaa atgctaggtg catggtgttt
     5821 tcgatgcctg cgacagcttt ttccatatcc gccacttcat aagaaagggc cctggctgtc
     5881 tcgcccgctt cgattacctc ttggctaccg tcttcagtat aggtaatgac tgctttctga
     5941 ccacgtgggt actcgtaaag ctcgatgtag cctttatcgt aggcaatagt gccccgtttt
     6001 ggctgtttgg catggagggt cagggcggtg gtcgccattt ctcctgcatc attgctgagc
     6061 aaaatcccta cctgctcgtc cacacctgtc ggagccaatt tgacctgaga taggacttga
     6121 tttggctttt ccgtcataaa ccaacggaca aaggacagag cgtagacacc aatatccaag
     6181 agggcaccgc cggccaagtt cttattgaaa aagcggttgg tcatgtcgta ttccttgtag
     6241 ctgccaaagt tcatctgaat catcttcaaa tctcccagct tgccacttgc aatgacctca
     6301 ctcaactgac gatagattgg catgtggaaa atggtcatgg cctccgccaa gacgacctga
     6361 ttttcctcag ctaattgaat agcttctgcc aattcttctg aattaagcgt aatagacttt
     6421 tcacagagga catgctttcc agccttcaaa gcttttctca aataattgat atgggtattg
     6481 tgaggcgtag aaatatagat aatgtctact tcaggatcct caaacacttc atcgatttct
     6541 cgataaactt tctcgatgcc atatttttgc gcaaattcca cacccttgtc ataggtacgg
     6601 ttggctaccg aataaagatt tcctcccata tcctgcaagg cctgaaccaa ttcgttggca
     6661 atgacacctg ttcccagagt cgcccattta tacttcattt gcacttccat agtgtacctc
     6721 actttcttct accattatag taaattccac ccttttctgc acactctaac tagcatttgt
     6781 gttacaataa gaacatgaat accgttgtac taaaggcctc tgcccagcaa aaacaagcca
     6841 tgatggctca ctatgaccgc tatcggcaga ccagcaaaaa tccttacata gaagcatttt
     6901 tcaaactgac cggtgccagc ctgtccatct acacttctgg aaaagtcgtt tttcaggggg
     6961 aaatggcaga gcaggaagca gggctctggg gctatgagcc agaaagctct ggacagacga
     7021 ccatacctgg tcaaaacctg cccatgattg gtaccgatga ggttggaaac gggtcttatt
     7081 ttggaggttt ggcagtcgtt gctagttttg tccgcccaga agaccatgcc tttctcaagt
     7141 cgcttggtgt ggatgattct aagaaaatga cagaccaaaa aatctgccaa atcgctcctc
     7201 tcttaaaaga gaaaatcccc caccaagctc tgctattgtc accgaaaaaa tacaacgaag
     7261 tcatcgagca aggctacaat gcggtgtctg tcaaggtggc cctacacaat caggctattt
     7321 tcctactctt gcaaaagggt gtccagcctg agaagattgt cattgatgcc ttcacttcca
     7381 gtcaaaatta tcaaaagtac ttgaagaagg aagccaacca atttgccaac cccgtcactc
     7441 tagaagaaaa ggctgagggc aagtatctgg ctgtggcagt atcttctatc attgctagag
     7501 ctatgttttt agaaaatctt gtccagcttg gtcaactagt tgggatgaat ctgccgtctg
     7561 gtgcgggcag taaatccgac caagtcgcag caagcatctt aaaacaatat ggtatggctg
     7621 gtctcaacca aactgccaaa ctccactttg ccaatacgca aaaagcacaa aaattattga
     7681 aatgaggaaa aaatatggga gcaatccaaa aaacaaaacg ctcaccacta gtcgccttct
     7741 tagctgaatg gggcatcttt ttactgttta tggcagcttt ttttgccagt cgatacttta
     7801 tctggaatcc tgtctctgtc gatggccatt ccatggaccc aacgcttcaa caccaagaaa
     7861 aactcatcat gctaaaaacg acctctatcg accgctttga tattgttgta gccagtgaga
     7921 cagacagcga cggcaaggaa aaactgattg tcaaacgtgt gattggtatg ccaggtgaca
     7981 ccattcgcta cgaaaacgat gtcctctatg ttaacgacca aaaagtggac gagccttact
     8041 tagatgaata tctagctgca ttccagaaag ataaacttca agaagtctat tcttacaaca
     8101 aacaattcca agctgtggcc caatctgctg aagctttcac acaagatgcc aatggttacg
     8161 tagactttac cgtgacagta ccagaaggac aatactacct gatgggagat gaccgccttg
     8221 tctcactaga tagtcgtagt gtaggaacat tttcccgtga aaacatcaaa ggagaagttg
     8281 tctttcgcat gtggcctctc aaccgtattg ggactgttga ttaatacaaa caagtttgga
     8341 gcaatccgtt ccaaacttct ttttcattat tattggaact aaactctatg aacgaagtgt
     8401 attttaccgg cactattgac cggattattt ttgaaaatcc tagtaatttt tataaaatcc
     8461 ttctccttga aatcgaggag acagacgcag actatgatga ctacgaaatt attgtgaccg
     8521 gaacgattgc cgatgtcatt gaaggagaag actatcgttt ctatggcaat ctggtcaccc
     8581 atcccaagta tggtcagcag ctgcaaattt cgcgttacga acgcagcaag cctacctcag
     8641 ctggtctggt caagtatttc tccagcgagc atttcaaggg aattggacgc aaaacagctg
     8701 aaaaaatcgt tgagctctat ggcgaagata ccattgataa gattttagct gaacctgaaa
     8761 aactaaccca aatcacaggc ctatccagca agaacatgca ggcatttgtc gaaaaactcc
     8821 gcctcaatta tggaaccgag ttgatcttgg caaaactagc cgagtatggc attcccaata
     8881 aattggcctt tcaaatccaa gaccagtata aggaaaaaac acttcagatt attgaagaaa
     8941 atccctatca actggtcgaa gatgtccagg ggctcggctt taccattgcc gataggattg
     9001 cggaaaatct aggaattgcc agtgattcac cccaacgttt tcgggctggc atgctcttta
     9061 gtctcattca tcgctccatg gaaacaggcg atacctatgt ggaggccaga gacttgctgg
     9121 aagcaaccct tgaactgctg gaaaaatccc gccatacaga gctggacccc gctgctgttg
     9181 ccaaagaatt gacgggactg attgcagacg acaaggtaca gcaagaaggc acaaagattt
     9241 ttgacaacag cctctacttt gccgaacatg gtatccatac aaacctaact cgcctgatgg
     9301 gaaaaaacgg cttcaagccc ttcccacgcg cagacgtcga ggctgccata gcagagctgg
     9361 aaagcatatc ttctctcacc tacgataaca ttcaaaaaga agccattgtc caagccatta
     9421 ccaatccgct tttcattctg acaggcgggc cagggactgg aaagacaacc gttatcaacg
     9481 gtattatcgc ggtctatgcc atcttgcata agattgacct gactcgcaac cgagaagaat
     9541 gcccagtcct cctagccgct ccaactggac gagcagccag acggatgaat gaattgacag
     9601 ggctgccttc cgccaccatc caccgccatc tcggtctggt agaaggacag gaggaatcct
     9661 accgtgatga ttatttggat gccgacttta tcatcgtgga tgagttttct atggtagata
     9721 cttggttggc aaaccagctc ttccagaata tctcctccca gacccaagtt ctgattgtcg
     9781 gcgatgccga gcaattgcct tctgtcagcc ccggtcaagt acttgctgac ctcttgaaaa
     9841 ttgacaagct gcccagcatt actctagaac gtatctatcg tcaatccgat gattcgacca
     9901 ttgttaccct agccagccag attcgacagg gtgctctgcc tagcgatttt cgtgagaaaa
     9961 aggctgaccg ttcctatttt gaagcccaga atgaacaaat tccagccctg attgagcgca
    10021 ttgtcggcgc agccatcaag tcaggtattc ctgcaaacga ggtacagatc ctcgctccca
    10081 tgtaccgtgg ggccgcaggc atcgaccaac tcaacactat gacccaggcc ctgctcaatc
    10141 cactggaaga gggagagtta gaattcctgc ataacgagca agccttccgc caaggcgacc
    10201 gggtcattca tttagtcaac gatgccgagg ccaatgtctt caatggtgat ttaggctaca
    10261 tcaccgacct ccttcctgcc aagtacaccg actccaagca ggacgaaatt accatcaact
    10321 tcgacggtag cgaggtcacc tatccccgaa acgaatggta caagattacc ctggcctatg
    10381 ccatgtccat ccacaagtcc caaggcagcg agtttcaggt agtcatcctc cccatcaccc
    10441 gcaccagcca ccgtatgctc cagcgcaatc tggtctacac cgccatcacc cgctccaaga
    10501 gcaagctcat cctcctaggc gaaatctccg ccttcgacta cgccgtcaaa aacgccggca
    10561 ccgtccgaaa aacctatctg gtcccacgtt tccaagggga aatggcagag caggaaagca
    10621 aggaaagcct gattaaaaaa gacgaaagca aaacagctac aaccacgcaa acccagcccc
    10681 ctactcagcc agacagaaaa gaacaggtta aagtagtcaa agaaaacaac caacaactct
    10741 cccttcttga tcaagaccag ccaaaaaaaa caagtcccca acccacagaa tacattttga
    10801 ctgtagacaa cctactaacc atcgacccca tgattggcat agaacaggca gatattgaag
    10861 aattttttaa agcataaaaa ccagcaagtc agtagatgaa caccgttata ttcttttatt
    10921 tgacagcctc taaagctgct ttataatctg ggtgttcgtt gacattgtct aggtattcta
    10981 cgtagacgat ctcattgtcg gcattaagga caaagaccgc acgcgccagc aaattccact
    11041 cccgcatgag cacaccgtag gattttccaa aggcatggtc atagtcccct accatggcga
    11101 ctgtcttgcc ctgttcttgt aagaacttga cttggttggc cttgtcatct ggcaggacct
    11161 gactgaccac ctgctcaatg ccgacttcct tggcaatagc ctgggcagtt ttttcattat
    11221 ctcctgtcag catgacaacc tctagttcca tggtttgcag agcctggaca gcctgacggc
    11281 tggtctcttt tactttatca gcaatggcaa tgactgctag tacttcttgc tggctggcta
    11341 ggaaaacagg cgtcttagct tgatgggcaa atgtttccgc aactgcacgt cctttggaaa
    11401 catcaattcc ctgttcccgc atcaaccgtt catttcccag atagatggtc tgctctgcta
    11461 ttgttaccga aagaccacga ccagaaagtg cctgaaaatc ttggctggca agtaagggaa
    11521 ttgattcctc ttctgctgaa cgtaagaggg cttgagccaa tggatgctcg gagtattgtt
    11581 cactgcttgc tgccagttgg agaacttgct cacgattttt agtagacaaa aggtggatgt
    11641 ctgtcacttg tggcttgccc tcagtaatgg tcccagtctt gtcgaagaca atggtgttca
    11701 caccttgtag ggttttaata gtttgaccag acttgaacaa aagaccattt tctgcccctt
    11761 ttccagtccc aaccatgata gcggttggtg tggcaaggcc caaggcacac gggcaggcaa
    11821 tgacaaggac ggagatggta atggaaagtg agaacatcta gggctcttgt cccaagaagt
    11881 accaagcaag gccagaaagg acggctaatc ccattacaat tggaacaaag actgctgaaa
    11941 cgcggtcagc caactgcgca atcggagctt ttgacccctg tgcttcttcc accaaacgaa
    12001 taatttggga caatgtggta tctgctccaa cttttgtcgc ttccatttgg aaagcaccat
    12061 gttgattgag agtcgcacca acgactgtat ccccgatgtt tttttaacag gcaaactttc
    12121 ccctgtcagc atggattcat caattgtcga ttggccttct actattatcc catcaactgg
    12181 aatctgttca ccagggcgga cttgaaggac atctcctact ttgacttggt ctaaggggag
    12241 ggtcacttct tgaccttcac agagaacgcg tgcagtttta ggggcgagat tcatcagttt
    12301 actgatagct tctgaagtac gctcttttga taatgcctcc atgtattttc caagagtgat
    12361 aagggttaaa ataacagctg ccgattcaaa atagagctca ggatgtccat gttgggtggc
    12421 tacttggttg gtagcaatca aaatcgtcag tcataatgat cccttgaaac aaggcagcac
    12481 ttgtcccaac ggcaatcaaa ctatccatat tgggatgacc ggcaaacagg gttttaaacc
    12541 ctttttgata aaatgcacga ccaacatata ggactggtaa tacaagaatg agctgaacta
    12601 gggcaaaaac tagcggctgg tgtaagatag ctggcaatgg caatccccca cctggtaaca
    12661 taggtcccat tgcaatgtag agtagtggaa gcgtgaaaat ggttgaccag ataaatctgt
    12721 gccataaatc atttttgtgt tgttcttttc cgcttggttg agcttctgac tcttgtgttt
    12781 ttggcagtac cgctttataa cctgcttttt caacagctgt cgatatctga taagctcaga
    12841 tgggctggat catactgaat gtttgttttt tccgttgcta gattcacact ggcgttttgt
    12901 attccatcta gcttattcaa ggctttctcg actgtcatag cacaggaagc gcaggtcacg
    12961 ccttgaatgg gatagcttgc ttgtttcata gattactcct tttctgacta catttgtaaa
    13021 cgaattatac aacatccgac tacatttgta aacaattttg attaaaaaaa tgagagaatc
    13081 ttctctcatt aggtatctga tcaaaagggt aataaactta tatatattct gtatgtgttt
    13141 gaacataggt taatttgcta acgattcatt tagatagata gaacaatttg tatggatttg
    13201 cattagagtt gatggaaatc cagtatctgg cttagaacaa actgttttac gtatgaccgc
    13261 atgatgccaa tcacgaaaaa ctgcaagtcg aatttttttc gcttgaaaaa tctcgctcat
    13321 tcctattgtt acacaataat taggcacttc ttctacagct ccttttaata ccgtcaaacc
    13381 attcataacc tttgtctcga cagaaatagg taacactcgc gaccctaatt ttaaaaattc
    13441 ttgaactgtt aatgttgaat ccggttcatt gaatgcaatg tgcccattta ggccaattcc
    13501 accaatacat aagtcgattt tacctaattc tttgatttta tttgaaatcg agtctatatc
    13561 aagaggatct ggaaaaattc tttgttcttc tgacataata agagttggat gtatttgact
    13621 gtagacattt ttctgcataa atcctcgaaa actaagaggg tgtactacgt ctatccaatg
    13681 caaatcttcc aacaaatatt catccatgtt aataaaccaa acattagaca aatcaatctt
    13741 aaattgattc actaatctaa caaaatgcgg atactgacca actggtccaa caggacaaat
    13801 tatgacagtt ttctcatttt tttcgttatt ttcctttatt aattctacca tttctagagc
    13861 aagtgaaata aaaatttcct cattattctt tttta
//
LOCUS       DASGCC010000055        13893 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.055, whole genome shotgun sequence.
ACCESSION   DASGCC010000055 DASGCC010000000
VERSION     DASGCC010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13893
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.055"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            20..544
                     /locus_tag="U1404_001101"
     CDS             20..544
                     /locus_tag="U1404_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348062.1"
                     /translation="MKTNLLKTAGLLAGCVRYFFYLLIAGYIFFSLAGFRGDSFVIGS
                     WEYTFNKPIDQISVWLILLTSGLILIILAVLSHIAHLIQKLCKLLLEEDYFASASLEL
                     YQKLFISLLVLTAGQFCLTSLITLTNAAGPNNFLNLRWSDFILNALFIFLTYFVWTLV
                     QKGQQLETENSEFI"
     gene            546..761
                     /locus_tag="U1404_001102"
     CDS             546..761
                     /locus_tag="U1404_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5348063.1"
                     /translation="MEMIRVNLDKVLKDRQMTSKDLAEQVGITEANLSILKTGKAKGI
                     RFNTLMSICRILDCQPGDILEYVKEGE"
     gene            763..1269
                     /locus_tag="U1404_001103"
     CDS             763..1269
                     /locus_tag="U1404_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEM5348064.1"
                     /translation="MNKKIFFNIVIQLLTFIRHGLIALTGLIMLALLILLIGGKPIQN
                     SLQLDVPLPIIVIILIISILLVACFIYMATILKKLLINFQTGTIFSTENVVYTKIILG
                     TLIIWTSIQFASAFFLSYLDLENVSDLYDFSLSDYFINGVLIIIALLAKMVLEKGVLL
                     QAENDEII"
     gene            1281..1751
                     /locus_tag="U1404_001104"
     CDS             1281..1751
                     /locus_tag="U1404_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348065.1"
                     /translation="MKKYISLIALCMMIPCLSACHSVTSEVNKEMQNELTAASIETEK
                     ALKTDERLAEIESFQQIVEIAASKGEFSLESSFSGKVYLMATKENLEKLSKEEFTLNK
                     KSFSTIDAGSSNDFNIRYKHQTYFTVQSLSVQDMEDFEYTKSSSTSAILVFYPN"
     gene            complement(1788..2459)
                     /locus_tag="U1404_001105"
     CDS             complement(1788..2459)
                     /locus_tag="U1404_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5348066.1"
                     /translation="MDINWQAVFNADIAREAIPQILEGLPYTLSLSLIGFALGTFCGF
                     FVAFMRMSKFGPLRWLAMAHISLMRGIPLMVLLFFIYFGLPFMGLQLDAISASIIAFT
                     SMSSAYISEIIRASLSAIDKGQWEAARSLGLRTNVIYRKIIIPQAFRIALPPLSNVLL
                     DMVKSTSLTAMITVPEIFNKAKIVGGAKSDYMTVYICVALIYWAICTLYAFGQLRLEK
                     RLATY"
     gene            complement(2550..3425)
                     /locus_tag="U1404_001106"
     CDS             complement(2550..3425)
                     /locus_tag="U1404_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000751024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5348067.1"
                     /translation="MLKKVLASALLVSTLTLAACSSSSSNTSSSSAEQTQWEKVQEAG
                     VLKVATPGTLFPTSYYNDAKELVGYEIDMINEIGKRLKLEIEYQEIGVAEAFTAVDSG
                     KVDISVNNFDMTEARKEKYNFSIPYKYSVGGYIVREDGSSGIEAADLSDWTGKKAGGG
                     AGTQYMKIAEKQGAEPVIYDNVTNDVYLRDVSTGRTDFIPNDYYTQVMAIKWANANFP
                     DIKVKMGDAKYNPTEQGIVMSKADTSLKEKIDEALEAMKADGTLKAISEKYYAGQDLT
                     VPVENADQLPVIEVE"
     gene            complement(3550..4998)
                     /locus_tag="U1404_001107"
     CDS             complement(3550..4998)
                     /locus_tag="U1404_001107"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEM5348068.1"
                     /translation="MTWKDATAMAQAVNQKQVSAKELVQETIDRIEKLNPTLNAVVSK
                     QYEEALKEAEKEDYLGKPFAGVPFLLKDLGQNEKGQPSSAGSRLLAGRPAGHTDTYVQ
                     RLKDLGFIIVGRTNTPEFGFKNISDASLHGPVKLPLDPSRNAGGSSGGAAAALASGMV
                     SIAAASDGGGSIRIPASFNGLIGLKTSRGRIPVGPKSYRGWQGASVNFALTKSVRDTQ
                     RLLYHFQDYQLEAPFPLAKLSEEEVFGKLSRPLKIAYYTKSPVGSKVSPEAVEAVQKA
                     CHHLANLGHEVVELSEYPLDGVALMKSFYLMNSVDTAQMFDEIEAAFGRQMTLDDMEV
                     MSWAIYQSGQTIPAKLHSKALLDWDQFGASMARFHEEYDLLLTPTVADVAPKHGQFDL
                     SADLLDRLKQTQNYSMEEQQDLIWQMFEDSLALTPFTQQANICGQPAISLPTYVRADG
                     LPIGIQLTASKGREDLLLRLADQMEAAGLLNL"
     gene            complement(5008..5835)
                     /locus_tag="U1404_001108"
     CDS             complement(5008..5835)
                     /locus_tag="U1404_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HEM5348069.1"
                     /translation="MKSWVENVTIKKYEDRSGLTGLKQGPLVWTEVFLREVNRQSNTG
                     ILHFWPMDQTVILGMMDSQVAQLDKGLASIGQAGYSPIIRSLGGLAVVADDGILNVTL
                     IFPNPSGHKVDLRESYQVMVDLIAQALSDFPFEVVSGEVATSYCPGTYDLSIKGRKFA
                     GLAQRIYQEAIAISAYISVSGNQVKRGQVVADFYAASFAPQEVSDRFPQVNPNSMANL
                     SDLVAQDLTMEDMKIRIEHVLIENGAFLTTFYPSSDNMADFMALGKTIKQSMEKYGI"
     gene            complement(6111..7247)
                     /gene="dnaJ"
                     /locus_tag="U1404_001109"
     CDS             complement(6111..7247)
                     /gene="dnaJ"
                     /locus_tag="U1404_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEM5348070.1"
                     /translation="MNNTEFYDRLGVSKNASPDEIKKAYRKLSKKYHPDINKDPGAED
                     KYKEVQEAYETLSDPQKRSAYDQYGPAGANGGFGGGAGGFGGFDGAGFGGFEDIFSSF
                     FGGGGATRNPNAPRQGDDLQYAVNLKFEEAIFGVEREVSYNREATCRTCTGSGAKPGT
                     SPVTCGRCHGSGVINVDTQTPLGTMRRQMTCDVCHGRGKQIKDPCATCHGTGHEKQAH
                     TVTVKVPAGVETGQRIRLAGQGEAGFNGGPYGDLYVVIQVQPSDKFEREGTTIHYKLN
                     LNFVQAALGDTVHVPTVHGDVDMVIPEGTQTGKTFRLKGKGAPSVRGGAIGDQYVTVN
                     IVTPTGLNDRQKAALKEFAAAGNIDVKPHKKGFFDKVKDAFEDL"
     gene            complement(7781..9604)
                     /gene="dnaK"
                     /locus_tag="U1404_001110"
     CDS             complement(7781..9604)
                     /gene="dnaK"
                     /locus_tag="U1404_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002946936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEM5348071.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKN
                     GEIIVGDAAKRQAVTNPDTIISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAE
                     EYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDK
                     DEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKEN
                     GIDLSADKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGAAGPLHLEMTLTRAKFD
                     ELTYDLVERTKIPVRQALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAETGKEPNKS
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSK
                     SQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVTFDIDK
                     NGIVSVKAKDLGTQKEQTIVIQSNSGLTDEEIDRMMKDAEANAEADKKRKEEVDLRND
                     VDQAIFATEKTLKETEGKGFDAERDQAQVALDELKAAQEANNLDDMKAKLENLNEKAQ
                     ALAVKLYEQAAAAQQAAAGQEGAQTANNAGDDVVDGEFTEK"
     gene            complement(9700..10212)
                     /gene="grpE"
                     /locus_tag="U1404_001111"
     CDS             complement(9700..10212)
                     /gene="grpE"
                     /locus_tag="U1404_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEM5348072.1"
                     /translation="MSEEIKNEEIVEEVETTEEVVETPEKSELDLANERAEEFENKYL
                     RAHAEMQNIQRRANEERQTIQRYRSQDLAKKILPSLDNLERALQVEGLTEDVKKGLEM
                     VQESLIQALKEEGVEEVATDVFDPNLHMAIQTVPATDDCPAEHIAQVFQKGYKLHERL
                     LRPAMVVVSE"
     gene            complement(10349..11383)
                     /gene="hrcA"
                     /locus_tag="U1404_001112"
     CDS             complement(10349..11383)
                     /gene="hrcA"
                     /locus_tag="U1404_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEM5348073.1"
                     /translation="MITQRQNDILNLIVELFTRHHEPVGSKALQEMIASSSATIRNDM
                     AKLEQLGLLEKAHTSSGRMPSRAGFQYFVNHSLNLEYIDEEDVYQVVKAFDFEAFKLE
                     DILERASQVLADLTGYTSVILDVEPTSQQLTSFDIVQLSSHDALAVLTLDQSKPVTVQ
                     FAIPKNFLTRDLEVLKRLVDERFVGQTVLAIHYKLRTEIPQVVQRYFTTTDNVLDLMD
                     YIFSNLFQESVFISGKVASLTYGNLATYQLLDNPQVLASELRQGLAPNQQTSISVAEH
                     REPALADVTVIHHRFPIPYRGMAQMSLLGPVNMNYRRQMSLINIISRVLFMKLTDYYR
                     YLSSNHYEVN"
     gene            complement(11605..12300)
                     /locus_tag="U1404_001113"
     CDS             complement(11605..12300)
                     /locus_tag="U1404_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5348074.1"
                     /translation="MADVRLYISRHGKTMFNTIGRVQGWCDTPLTKAGEEGIRELGLG
                     LKDAGLEFKLAVSSDLGRTVQTMTIAQRELGILGKIPYYQDKRIREWCFGSFEGMYDA
                     ELFQGVLPRLKGTVDATGMTFSEIAAGIQEADTAGWAESWEVLSNRILTGFEAIAQDL
                     EKQGGGNALVVSHGMTIATLAHLLEPERGANIFLDNGSITVLKYENGKLLIEAVGDLS
                     YRKRGAELIAQGK"
     gene            complement(12376..13713)
                     /locus_tag="U1404_001114"
     CDS             complement(12376..13713)
                     /locus_tag="U1404_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEM5348075.1"
                     /translation="MDIRQVRETIEMIEEQNFDIRTITMGISLLDCIDADIEKAAEKV
                     YTKIVTKAKNLVAVGDEIAAELGIPVVNKRVSVTPIALIGAATDATDYLPLAHALDKA
                     AHEIGIDFIGGFSALVQKGYQKGDEILINSIPQALAQTTKVCSSVNIGSTKTGINMTA
                     VRDMGRIIKETAEASDMGAAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGV
                     VKRALEKVRGESFDVVAETVKKTAFKITRIGQLVGNMASERLGVKFGIVDLSLAPTPA
                     VGDSVARVLEEMGLETVGTHGTTAALALLNDAVKKGGVMACNQVGGLSGAFIPVSEDE
                     GMIAAVQNGSLNLEKLEAMTAICSVGLDMIAIPETTPAETIAAMIADEAAIGVINQKT
                     TAVRIIPLGKEGDMIEFGGLLGTAPVMKVNQASSADFINRGGQIPAPIHSFKN"
     gene            complement(13725..13880)
                     /locus_tag="U1404_001115"
     CDS             complement(13725..13880)
                     /locus_tag="U1404_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid-binding protein"
                     /protein_id="HEM5348076.1"
                     /translation="MDEYFTMMAVVSSDEKKDFTKLRAELEAFGQGLNVKINIQSAAI
                     FDAMHNL"
BASE COUNT         3706 a         3339 c         2923 g         3925 t
ORIGIN      
        1 taataattgg aggtttgcta tgaaaaccaa tctactcaaa acagcaggat tgttagctgg
       61 ttgtgttcgc tatttcttct atttattaat tgcaggctat attttcttta gcttggctgg
      121 tttccgaggc gactcatttg tgataggctc ttgggaatac acctttaaca aacccattga
      181 ccagattagt gtttggctca tccttttaac aagtggatta atcttaatca tcttggcggt
      241 actcagtcac attgcccact tgattcaaaa gttatgtaaa ttgcttctgg aagaagatta
      301 tttcgcttca gctagtctgg aactttatca gaaactcttc atcagtttgc tcgtcttgac
      361 tgctgggcaa ttttgcctaa ccagcttgat caccttgaca aatgctgctg gaccaaacaa
      421 cttcctcaat ctgcgttggt cagatttcat cctcaatgct ctctttatct tcctgactta
      481 ttttgtctgg accttagtac aaaaagggca acaacttgaa accgagaaca gcgagtttat
      541 ctgatatgga aatgattcgc gtaaacctag acaaggtcct caaagaccga caaatgactt
      601 ccaaggactt ggcggagcaa gtcggcatca ccgaagccaa tctgtccatt ctcaagacag
      661 gcaaggcaaa agggattcgt ttcaataccc tgatgagcat ctgccgcatc ctagactgcc
      721 aaccaggaga tattttggaa tatgtgaagg agggggaata gcatgaacaa aaagatattt
      781 ttcaacatcg tcatacagtt gctaacgttt attcgtcatg gattgattgc cttaacggga
      841 ctgataatgt tggcacttct tattctactt ataggcggga aacctattca aaatagtcta
      901 caattagacg tccccttgcc tatcattgtt attattctaa tcataagtat cctattggta
      961 gcctgcttta tctacatggc caccatactc aaaaaattgc tcatcaactt tcaaacagga
     1021 actattttct caactgaaaa tgtagtctat acaaagataa ttttaggaac cttaatcata
     1081 tggacgagca tacaatttgc aagtgctttt ttcctatctt acctagattt agagaatgta
     1141 agtgatttat atgatttttc acttagtgac tacttcataa atggtgtgct gattattatt
     1201 gcactactag caaagatggt gttggaaaaa ggtgtgcttt tacaagctga aaatgatgaa
     1261 attatataaa ggagcccatg atgaaaaagt atatttccct cattgcactc tgcatgatga
     1321 taccttgctt aagtgcttgt cactctgtca cttcagaagt taataaagaa atgcaaaacg
     1381 agctaacagc agcttccatt gaaacagaaa aagctctaaa aacagatgaa cgtctggctg
     1441 agattgagag ctttcagcaa attgtcgaaa tcgctgcatc caaaggagag ttctctcttg
     1501 aatcttcttt ctctggcaag gtctatttaa tggcaacaaa agaaaatctc gagaaactct
     1561 caaaagaaga gtttactctg aataaaaaga gcttctcaac tatcgatgct ggtagtagca
     1621 atgattttaa tatccgctac aaacatcaaa cttacttcac tgttcaaagc ctatccgtgc
     1681 aagatatgga agattttgaa tacaccaaat cctcttccac ttccgctatt cttgtgttct
     1741 atccaaacta gaaaaaattc ctcgattcaa aagaaccgag gaatttttta ataagtcgcc
     1801 aggcgttttt ctaacctgag ctgaccaaag gcgtagagag tgcagatggc ccaatatatc
     1861 aaggcaacac agatataaac tgtcatgtaa tcagacttgg ctccgccgac tatcttggcc
     1921 ttattgaaaa tctctggtac cgtaatcatg gctgtcagag aggtactttt gaccatgtct
     1981 aagaggacat tgctcagcgg tggaagggca atgcgaaagg cttggggaat aatgattttt
     2041 ctgtaaatca cattggtccg caagcccagg gaacgcgctg cctcccattg tcccttatca
     2101 atggccgaaa gagatgcacg aataatttca gaaatgtagg cactggacat ggaggtaaag
     2161 gcgataatag atgcggagat agcatctagt tgtagcccca tgaaaggcaa tccaaaatag
     2221 atgaaaaaga gaaggaccat gaggggaatt ccacgcatga gagaaatatg ggccatagcc
     2281 aaccaacgca aggggccaaa cttagacatc cgcatgaagg ctacaaaaaa tccacagaaa
     2341 gtccccaagg caaaaccaat tagggatagg gacagagtgt agggaagtcc ctccaaaatc
     2401 tgtggaatag cctctcttgc aatatctgca ttaaaaactg cctgccagtt aatatccata
     2461 tcttctcctc tttcctaaaa accagataga ccttgccagc ctgtgactga caaagtctat
     2521 acaagatgca tttaatttgt tacgaggtct tattcaactt cgataactgg caattggtct
     2581 gcattttcaa cagggactgt caaatcttgt cccgcatagt atttctcaga aattgccttc
     2641 aaagttccgt cagctttcat cgcttcaaga gcttcgtcaa ttttttcttt caagcttgtg
     2701 tcagccttgc tcatgacaat accttgttca gttggattgt attttgcatc acccatcttc
     2761 actttgatat ctgggaagtt agcatttgcc catttgatgg ccatgacttg tgtatagtag
     2821 tcgtttggaa tgaagtctgt acgacctgtt gatacatcac gcaaatagac atcattggtt
     2881 acgttgtcat agataactgg ctctgctcct tgtttttcag caattttcat gtactgagta
     2941 cctgcgccac caccagcttt tttaccagtc cagtcgctca agtcagctgc ttcgattcct
     3001 gatgaaccat cttcacgaac gatgtagcca ccaactgaat acttgtaagg gatagagaag
     3061 ttatactttt ccttacgtgc ttctgtcatg tcaaagttgt taacagaaat atcgacctta
     3121 ccactgtcca cagctgtaaa ggcttctgcc acaccgattt cttgatattc gatttccaat
     3181 ttcaaacgtt taccaatttc attgatcatg tcaatttcat atccgaccaa ttctttagca
     3241 tcgttgtagt aagaagttgg gaaaagggtc cctggtgttg caaccttcaa gacacctgct
     3301 tcttgtactt tttcccattg agtctgttca gcagaagaac tgctagtatt agaacttgag
     3361 ctagaacatg ctgccaaggt caaagtagaa accaagagag ctgaggccaa aacttttttc
     3421 aacataaaac aatctccttt ggaagctata gcttcctttt ttactttttc ggtgttaacc
     3481 caccaacttt tacaggttaa cattttgaaa acgttttggc aaataattga actgaaaaaa
     3541 tgaattccct tacaagttga gtaaacctgc cgcctccatt tgatctgcca accgcaagag
     3601 taaatcctct cgtcccttgg atgctgttaa ttggatgccg attggtaagc cgtcagcccg
     3661 cacataagta gggagagaaa tggctggctg accacaaata ttggcctgct gcgtaaaggg
     3721 agttagggct aggctgtcct cgaacatttg ccagatcaag tcttgctgct cttccataga
     3781 atagttctgg gtctgcttga ggcggtccag caaatctgct gataggtcaa attgtccatg
     3841 cttgggcgct acatcagcca ctgtcggcgt caggagcaag tcgtattcct catggaaacg
     3901 cgccatgctg gctccaaact gatcccagtc caatagggcc ttggagtgca atttggctgg
     3961 aatggtttgc ccgctttggt aaatagccca ggacatgact tccatgtcat ccagggtcat
     4021 ctggcgccca aaagccgctt cgatttcgtc aaacatctgg gccgtgtcca cgctgttcat
     4081 caggtagaag gatttcatca gggccactcc atccagagga tattctgata attccacaac
     4141 ttcatgcccc aaatttgcca agtgatgaca ggctttttga accgcttcta ccgcttcagg
     4201 actgaccttg ctccctactg gagatttggt atagtaggcg atttttaggg ggcgagacaa
     4261 ctttccaaac acctcttctt cgctcagctt ggcaagggga aagggggctt ccagctggta
     4321 gtcctgaaaa tgatagagca gacgctgggt gtcacggaca gacttggtca gggcaaaatt
     4381 gacagatgct ccctgccagc cacgataaga cttaggtcca actggaatcc gaccacgact
     4441 ggttttgagc ccgatcaagc cattgaagga ggctgggatg cgaatagacc caccaccatc
     4501 cgatgccgca gcaatagaga ccatgcctga agccagtgct gcagctgcac caccacttga
     4561 tccaccagca ttgcggctag gatctaaggg aagcttgaca ggaccgtgca ggctggcatc
     4621 tgagatattt ttgaagccga attctggcgt gttagttcga ccgacaatga tgaaacccaa
     4681 gtccttcaag cgttggacat aggtatcggt atggcctgct ggtcgaccag caagcaggcg
     4741 agaaccagca gaagatggct gccccttttc attttgcccc agatccttca acaagaaagg
     4801 aactccagca aatggcttgc caaggtagtc ttctttttca gcttctttca aggcctcttc
     4861 atactgcttg ctgacaaccg cattgagggt gggattgagc ttttcaatcc tgtcaatggt
     4921 ttcttgcacc aattccttgg cagaaacctg tttttgattg acagcctgag ccatggctgt
     4981 cgcatctttc catgtcataa gaatctccta gataccatat ttttccatag actgcttgat
     5041 ggtctttccg agcgccataa aatcagccat gttgtccgac gaaggataaa aggtggtcag
     5101 aaaagcccca ttttcaatca acacatgctc gattcgtatt ttcatatcct ccatcgtcaa
     5161 atcctgagcg accaagtctg acagattggc catcgaattc ggatttactt gcggaaatct
     5221 gtccgatact tcttgtggag caaaacttgc cgcataaaaa tcagccacca cttgcccacg
     5281 tttgacttga ttgcctgata cactgatata ggcagaaatg gcaatagcct cttggtaaat
     5341 ccgctgagcc aatccagcaa acttccgccc cttaatacta aggtcgtagg ttccagggca
     5401 gtaggaagtt gccacctcac cactgaccac ctcgaaggga aaatctgaaa gcgcctgggc
     5461 aatcaaatcc accatgacct gataagactc ccgcaaatca accttgtgac cagaaggatt
     5521 gggaaaaatc agagtgacat ttaaaatccc gtcatccgca acgactgcca aaccgcccaa
     5581 actccgaata ataggactgt agcctgcctg accaatactg gctaagccct tgtccagctg
     5641 ggcaacctga ctgtccatca tccccagaat gaccgtttgg tccatgggcc aaaaatgtaa
     5701 aatccctgta ttggactgac gattgacctc gcgcaaaaag acctcagtcc acaccagtgg
     5761 cccctgtttc aaacccgtca aaccagaccg atcttcgtat ttctttatag tcacattctc
     5821 aacccaagat ttcattcgta agcgttctct ttcaaattac tatatcttat tttaacacag
     5881 agcctgtgat gcgtcggaaa aaatgcccag aggattttct gaaaaagaaa ggggagtggg
     5941 aaagaactcg accaagataa aaagagttcg tcttcccacc cccgcacagt tgattaggcc
     6001 agatttggag tgcaaaacac gaacaaatct gccaatcaac cactgcgctg agatgttgaa
     6061 acgaactctg agtagtggtc ctgggctttt tgcccagtct catcttagaa ttataaatcc
     6121 tcaaaggcat cttttacctt gtcaaaaaat ccttttttat ggggtttgac atcaatattt
     6181 ccagctgccg caaattcttt aagagctgct ttttggcggt cattcaaacc tgtcggagtg
     6241 acgatattta ctgtgacata ttgatcacca atagctccac cacgaacact tggtgcacct
     6301 tttcctttga gtcggaaggt cttaccagtc tgagtacctt caggaatgac catatccaca
     6361 tcaccgtgaa ctgttggcac atgaactgta tctccaagtg ctgcttggac aaagttgagg
     6421 ttcagtttat agtgaatagt ggttccttca cgttcaaact tgtctgaagg ttggacctga
     6481 atgacaacgt agagatctcc gtatggacct ccattgaaac cagcttcacc ttgacctgcc
     6541 aagcgaatac gttgaccagt ctcaacacca gctggcacct taaccgttac cgtatgggct
     6601 tgtttttcat gaccagttcc atgacaggtt gcacatggat ctttaatttg ttttccgcga
     6661 ccatgacaga catcacaggt catttgacga cgcatggttc caagtggagt ttgggtgtcc
     6721 acattgatca ctccagaacc atgacaacgc ccacaggtta ccggacttgt tccaggtttg
     6781 gcaccggaac ctgtacaggt tcgacaagtt gcctcacggt tataggaaac ttcacgttcc
     6841 acaccaaaaa tcgcttcttc aaatttcaaa ttgaccgcat attgcaagtc atccccttga
     6901 cgaggtgcat taggattgcg cgtcgcacca cctccaccaa agaagctaga gaaaatgtct
     6961 tcaaagccac cgaaacctgc tccgtcgaaa ccaccaaagc cacctgctcc tccgccgaag
     7021 cctccattgg caccagcagg accatactgg tcataggcag aacgtttttg agggtcgctc
     7081 agagtctcat aagcctcctg gacctccttg tatttatcct ccgcacccgg atccttatta
     7141 atatctggat ggtatttttt cgaaagcttc cgataagcct tcttaatctc gtctggcgaa
     7201 gcattcttag aaacccccag acgatcgtaa aattcagtat tgttcatata agatactaag
     7261 ggcgtaaagc ggacacagcc aaaataggag ttttgacgca ggacctcacc gtcctaggaa
     7321 aaactatctt tttggcacag tccgtagccc gtgttcgatt acgaacactt tcctttctat
     7381 catagttttg gaaaagtgaa aataggaaac tgacgcagtg tgtaaaacac actaggaggt
     7441 ttatcttttt cactaggttt ttagcctgtg ttcgaataaa cgaacttgta ttcctttctt
     7501 tgaaaattag aaagtagccc gtgttcagtt acaaacactt tcctttctgt aaaagttaga
     7561 agggtattta cccaaaaaca gaggctgggt tgcaacctct gtgattggaa attttattga
     7621 cgaatgattt ctattctcag gaagataaga attgagttcg agctaagaac cttaaccgac
     7681 ttcctactaa ttttcaagaa gtcaggataa aaaggtctcc cagtccaacc gctcgtttct
     7741 catttctggc tcacgggcta aaatagtcca caggactatt ttacttttcc gtaaactcgc
     7801 cgtctacaac atcatcgcct gcgttgttag ctgtttgggc accttcttgg cctgcggctg
     7861 cttgttgtgc tgctgcggct tgctcgtaga gtttcactgc aagggcttgg gctttttcgt
     7921 tgaggttttc aagtttagcc ttcatgtcgt ccaagttgtt agcttcttgg gctgctttca
     7981 actcatcaag agctacttga gcttggtcac gctctgcgtc gaagcctttg ccttcagttt
     8041 ctttcagagt tttctcagtc gcaaagattg cttggtcaac atcgttacga aggtcaactt
     8101 cttccttacg tttcttatct gcttcagcgt ttgcttctgc atctttcatc atgcggtcga
     8161 tttcttcatc tgtcaaacct gagtttgatt ggataacgat agtttgctct ttttgcgtac
     8221 caaggtcttt agcttttaca gaaacgatac cgttcttgtc gatgtcgaat gttacttcga
     8281 tttgtggaat accacgaggt gctgcaggga tgtcagtcaa ttggaagcga ccaagagtct
     8341 tgttgtctgc ggccattgga cgctcacctt gaagcacgtg gatatcaaca gctggctggt
     8401 tgtctgccgc agttgagaag acttgtgatt tagaagttgg gatagttgtg ttacggtcaa
     8461 tgagttttgt aaagacgcca cccattgttt cgataccaag tgacaatgga gttacgtcaa
     8521 ggaggacaac gtctttgaca tcaccagtga tgacaccacc ttggattgct gcacccatgg
     8581 caaccacttc gtcagggtta acagatttgt ttggctcttt accagtttca gccttaacag
     8641 cttccacaac ggctgggata cgagttgaac caccaacaag gatgacttcg tcgatttctg
     8701 acaagctgag acctgcatct gaaagagctt gacgaacagg aatttttgta cgttctacaa
     8761 ggtcgtaagt caattcgtca aatttcgcac gtgtcaaagt catttccaag tgaagcggac
     8821 cagctgcacc tgcagtgatg aacggcaagc tgatttgagt tgacgttaca ccagaaaggt
     8881 ctttcttagc tttttcagcc gcatctttca aacgttgaag agccattttg tcagctgaca
     8941 agtcgatacc gttttctttc ttgaattctg ctaccatgtg gtcgataatc ttttggtcaa
     9001 agtcgtcacc accgagcttg ttatcacctg ctgttgcaag tacgtcgaag acaccgtcac
     9061 caagttcaag gatagatacg tcgaaagtac ctccaccaag gtcgaatacc aagattttct
     9121 cgtctttgtc agtcttgtcc aaaccataag caagggctgc tgcagttggt tcgttgacga
     9181 tacgttctac ttcaagacca gcgattttac cagcgtcttt ggttgcttga cgttgagcat
     9241 cgttgaagta agcaggaacc gtgataacgg ctttagttac tttttcacca aggtactctt
     9301 cagcgtagcc tttcaagtat tgaaggatca tagctgagat ttcttgtggt gtgtattctt
     9361 tgccatttgc agaaactttt tcagaagttc ccatttttga tttgatagag atgatggtat
     9421 ctgggttggt tactgcttgg cgttttgccg catcaccaac aatgatttca ccatttttga
     9481 aagacacaac agacggagtt gtgcggtttc cttctgggtt tgcgatgatt tttgattcag
     9541 ttccttcaag aactgcaact gctgagtttg ttgtacctaa gtcaataccg ataattttag
     9601 acatgtttgt tacctctttt taatttactt tcttttcaag tagtttaacg acatctcggt
     9661 caggattctt ttttgggggg gcgggaaata gcagagcgac tactctgata cgactaccat
     9721 agccggtctc aacagacgtt catgcagctt gtagcctttt tggaagactt gtgcaatgtg
     9781 ttctgctgga caatcgtctg tagctgggac tgtttgaata gccatgtgaa gatttgggtc
     9841 aaagacatct gttgcgactt cctccacccc ttcttctttg agggcttgaa tcaagctttc
     9901 ttgtaccatt tccaagcctt ttttgacatc ttctgtcaag ccttcaactt gaagggcacg
     9961 ttccaagtta tccaaacttg gcaagatttt cttggccaag tcttgcgaac ggtagcgttg
    10021 aatagtttgg cgttcctcat tggcacggcg ttggatattt tgcatttcag cgtgggcacg
    10081 gaggtacttg ttttcaaatt cctctgcacg ctcatttgcc aaatccaatt ccgatttttc
    10141 aggtgtctcc acaacttctt ctgttgtttc aacctcttct acgatttctt cgtttttaat
    10201 ttcttctgac aaattgttca cctcttcatt ttctattatt actttgaaca ataataaatt
    10261 gagttcgggc tagaaactca gaaaagtgaa atagtccagt ggactgtttc agcctatttt
    10321 tcaatcgttt ccttcacgcc ctcacatctt aatttacctc ataatgatta ctgctcaaat
    10381 aacggtaata atcggttaat ttcataaata ggacgcggct gatgatgttg attaagctca
    10441 tctgcctgcg gtagttcata ttaacaggac cgagcaaact catctgggcc atgccccgat
    10501 aggggatagg aaagcgatga tgaatgaccg tcacatctgc aagagcaggt tctcgatgtt
    10561 ccgccacgga aatactagtc tgctggttgg gagccaagcc ctgccgcaac tcactagcaa
    10621 gcacctgcgg attatccaag agctggtagg tagcaagatt gccataggtc agcgaggcaa
    10681 cttttccact gatgaagacc gattcttgga aaagattgga aaagatgtag tccatgagat
    10741 ccaagacatt gtccgtcgtg gtaaagtaac gttgcaccac ctggggaatc tccgtccgca
    10801 gcttgtaatg gattgccaag accgtctgtc caacgaagcg ttcatccacc aggcgtttga
    10861 gcacttccaa gtccctggtc aaaaagttct tgggaatggc aaactgaacg gtgacaggtt
    10921 tagactggtc caaggtcaag actgccagag catcgtggct actgagttgc acgatgtcaa
    10981 aggaggtgag ctgctgactg gtcggctcca catctaaaat gaccgaggtg tagcctgtca
    11041 aatccgctag gacctgactt gcccgctcca agatgtcctc cagcttgaag gcttcaaagt
    11101 cgaaggcctt aaccacttga taaacatctt cttcatcgat atattccaga ttaagcgaat
    11161 ggttgacaaa atattgaaaa ccagcccgac tgggcatccg accacttgaa gtgtgagcct
    11221 tttctagcaa gcccagttgc tctagcttgg ccatgtcatt gcgaatggta gccgaacttg
    11281 aagcaatcat ttcctgcaag gccttggaac caactggctc atgatggcgc gtaaataatt
    11341 caacaatcag attcaaaata tcattttgac gttgggtaat catctccgct cctttcatga
    11401 acacgattga tttttagctt tagcactctc gtatgacgag tgctaaacta tatactccca
    11461 ttatacgccg aaaaaatgga ttgtcaagag aaaaagacaa aaaattagca ctcttttacc
    11521 tagagtgcta aaaatcagtc tgaggaccta gttacttccc tacttcaatc aaaaaaatca
    11581 gagaatatcc ctgatttcat atctttattt cccttgggca atcaattctg ctccacgttt
    11641 tcggtaggat aggtcgccaa ctgcttcaat taaaagcttg ccattttcgt atttgaggac
    11701 ggtgattgag ccgttatcga gaaagatatt agcaccacgc tctggctcta acagatgagc
    11761 cagggtggca atggtcatgc cgtgactaac cacaagagca ttgccaccgc cctgtttttc
    11821 caaatcttgg gcaatagcct caaaacctgt caagatacgg ttactcaaga cctcccacga
    11881 ttctgcccag ccagcggtgt ctgcttcttg aatacctgct gcgatttccg aaaaagtcat
    11941 gcctgtcgca tcaactgtcc ctttcaaacg aggcaggaca ccttggaaaa gctcggcatc
    12001 gtacatgcct tcaaaactac cgaaacacca ttcacggata cgcttgtctt ggtagtaagg
    12061 gatttttccc aaaatcccca actcacgctg ggcgatggtc atggtctgaa cggttcgacc
    12121 caggtcactg gacacggcta gtttaaattc aaggcccgca tccttgagcc ccaagcccaa
    12181 ttcacgaatc ccttcctcac cagccttggt cagcggcgta tcacaccagc cctgcacgcg
    12241 cccaatggta ttaaacatgg ttttcccgtg acgagaaata tataatctta catctgccat
    12301 tcgtttttct ccttgtcatt tcttactatt agtataacaa aaaaccgact gcttgtggca
    12361 atcggtctac gttttttagt tcttaaagct gtgaatcggt gctggaattt gtccgccacg
    12421 gttgataaag tccgcagaag aagcctgatt gaccttcatg actggcgctg ttcccagaag
    12481 gccgccaaat tcgatcatgt ccccttcttt tccaagcgga ataatgcgga ccgcagtcgt
    12541 tttctggttg ataaccccaa tggccgcttc atccgcaatc atagctgcaa tggtttcagc
    12601 aggtgttgtt tctggaatag caatcatgtc caaaccaaca gaacagatag ccgtcatagc
    12661 ttctaatttt tcaaggttaa gggagccatt ttgcaccgca gctatcatgc cctcgtcctc
    12721 agacacaggg atgaaggcac ctgacaagcc accgacctgg ttacaagcca tgaccccacc
    12781 ctttttcact gcgtcattga gcagagcaag ggcagcagtc gttccgtgcg taccaacggt
    12841 ttctaagccc atttcctcca aaactcgtgc cactgagtcg ccaaccgctg gcgttggagc
    12901 aagggacagg tccacgatac cgaacttgac acccaggcgt tcgctggcca tatttcctac
    12961 caactgaccg atacgggtaa tcttgaaggc ggtcttcttg acggtctccg ccaccacatc
    13021 aaagctctcg ccacgcactt tttcaagggc acgcttgacc acaccaggtc cagacacgcc
    13081 gacattaatg accacatccg cctcaccgac accatggaag gcacccgcca taaagggatt
    13141 gtcctcgacc gcattggcaa agaccaccaa cttggcagcc cccatatcag aagcctccgc
    13201 cgtctccttg atgatccgcc ccatgtcccg cacagccgtc atattgatac ccgtcttagt
    13261 cgagccgatg ttgaccgacg agcagacttt tgtcgtttgg gccaatgcct gcggaataga
    13321 gttgatgagg atttcatctc ctttttggta gcccttttga acgagagctg aaaagccccc
    13381 gataaaatca attccgatct catgagccgc cttgtccaag gcatgagcta ggggaaggta
    13441 atccgtggca tccgtcgccg caccaatcaa ggcaataggc gtcaccgaca cccgtttgtt
    13501 aacaacagga atccccagct ctgccgcaat ctcatcgccg actgctacca agttcttggc
    13561 cttggtgaca atcttggtat acactttctc cgcagctttt tcaatatccg catcaataca
    13621 gtccaagagg gaaattccca tggtgatggt ccgaatatcg aaattctgct cctcaatcat
    13681 ttcaatggtt tctctaacct gtctaatatc catgaaatct ctccttacaa gttgtgcata
    13741 gcatcaaaaa tggctgcact ttgaatgttg attttcacgt tcaaaccttg accaaaggct
    13801 tctagttctg cacgaagctt ggtgaaatct ttcttctcat ccgacgacac caccgccatc
    13861 atggtaaaat actcatccaa aacagtttgg gaa
//
LOCUS       DASGCC010000056        13786 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.056, whole genome shotgun sequence.
ACCESSION   DASGCC010000056 DASGCC010000000
VERSION     DASGCC010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13786
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.056"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..512)
                     /locus_tag="U1404_001116"
     CDS             complement(<1..512)
                     /locus_tag="U1404_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HEM5348077.1"
                     /translation="MDTKSLLVTGYRHTDLGIFSEKDPRLHIIKSAIRRNFIRFLEEG
                     VSWFILTGQLGFEYWSLEVLEDLRAEGYQLSIATIFPFENHGEQWNEANQAKLARFKQ
                     VDFVKYAYPRYENPGQFRDYNQFLLDNTTGCYLFYDSENETNLKYLYHMVLKKEGYNR
                     KTLTFEELNE"
     gene            578..1195
                     /gene="recU"
                     /locus_tag="U1404_001117"
     CDS             578..1195
                     /gene="recU"
                     /locus_tag="U1404_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HEM5348078.1"
                     /translation="MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYL
                     AHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQASTTDYSGVFKRHYIDFEAKET
                     RQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
                     SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN"
     gene            1164..3350
                     /locus_tag="U1404_001118"
     CDS             1164..3350
                     /locus_tag="U1404_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HEM5348079.1"
                     /translation="MVNLLKTTTIKKALLITANILLAGAIIACLAGAALVVYYIQSAP
                     ELTEESLTATVSSKIYDKNGNLIADLGAEKRSSAKTEEIPTDLVNAIVAIEDQRFFNH
                     RGVDVIRIAGSLINNLSGGRLQGGSTLDQQFIKLTYFSTSVEDQNLKRKIQEAWLATQ
                     LERRNTKQEILTYYINKVYMSNGNYGMKTAALAFYGKELKDLTLPQLALLAGMPQAPN
                     QYDPYTNPEDAKARRDLVLAEMLEEKYIDNPQYEQAVLTPVTDGLQPLSNAAAYPAYM
                     DNYLKQVVEEVEAKTGYNLLTTGMDVYTNVDPAAQQQLWNIYNTDMYVSYPDDLLQVA
                     STVVDVSNGKVVAQLGGRKQETNVSFGTNQSVETNRDFGSTMKPITDYAPAFENGIYT
                     STADLILDGPYNYPGTPTPVNNWDKQYYGNISVKTAIQYSRNVTAVKALEATGLENAL
                     KFLNSVGINYPDIHYSNAISSNTSDTSSKYGASSEKMAAAYAAFANGGTYYAPQYVNK
                     IVFSDGTVTEYAPKGTKVMSAETAYMMTDMMKAVMSYGYGLNASVSGVPMAGKTGTSN
                     YTDSETDTILASIPEANYSYMVVPDENFVGYSSQYAMAVWTGYTNRMTPILDNSMRIA
                     TDVYHNMMLFMHSDYTATDWEMPSGLVRYGSNYYLRGSRSLSNAYNTYTSSSTSSSSS
                     TETSETTEATTTSSETSSGTATETATSSTETATTGNNPATGQTDGQ"
     gene            3409..4116
                     /gene="rsmG"
                     /locus_tag="U1404_001119"
     CDS             3409..4116
                     /gene="rsmG"
                     /locus_tag="U1404_001119"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004260112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEM5348080.1"
                     /translation="MKPEVFYKTLADQGIQLTDQQKHQFHRYFQLLVEWNEKINLTAI
                     TEESEVYLKHFYDSIAPILQGHIQNEPLRLLDIGAGFPSLPMKIIFPQLDVTIIDSLN
                     KRINFLHLLAEELELEGVHFYHGRAEDFAQDKNFRAQFDLVTARAVARMQILSELTIP
                     YLKLNGKLIALKASSAEDELTQAKNALNLLFAKVIENHDYTLPNGDPRTLTIVEKKKE
                     TPNKFPRKAGLPNKRPL"
     gene            complement(4306..4509)
                     /locus_tag="U1404_001120"
     CDS             complement(4306..4509)
                     /locus_tag="U1404_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEM5348081.1"
                     /translation="MVQGTVKWFNAEKGFGFIAQENGPDVFAHFSEIQSNSFKSLEEG
                     QKVTFEVEQGQRGLQATNITKIG"
     gene            complement(4669..5502)
                     /locus_tag="U1404_001121"
     CDS             complement(4669..5502)
                     /locus_tag="U1404_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5348082.1"
                     /translation="MSQQKLIGYHPGTGFIHSLSAVSKLLFFLIVSILAMITYDTRLI
                     LFIAVFSLALFKMSGIRYKEISLVLILTIIFAAMNALMVHLFAPRYGVELYGADTPLL
                     SGLGVYSLTSQQAFYLVNLLLKYFCTVPLAIIFLMTTHPSQFASSLNQIGVSYKVAYA
                     VSLTMRYIPDIQEEFYTIRMSQEARGLELSKKGKLMDRIKGNLSLVIPLIFSSLERID
                     TISTAMELRRFGKNKKRTWYTQQPLQRIDYAVLLFILALVVVTIYLFFINQGRFYNPW
                     R"
     gene            complement(5499..7172)
                     /locus_tag="U1404_001122"
     CDS             complement(5499..7172)
                     /locus_tag="U1404_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348083.1"
                     /translation="MKKIIEFKDFTFKYQAQQEPTLKDIQLTIYQGEKVLIIGPSGSG
                     KSTIGQCLNGIIPNIYKGEHSGSLLLDGQEAFNLSVYDKSLLVSTVLQDTDGQFIGLS
                     VAEDLAFALENDMESQVVMKQKVGDWAERLSLTDLLAHRPQDLSGGQKQRVSLGGVLI
                     DESPILLFDEPLANLDPKSGQDTIDLIDRLHKQEGTTTIIIEHRLEDVLYRQVDRVVL
                     INDGRILFNGGLDDLLRTSLLQENGIREPLYLSTLRALGYPIAQAEHLSSVWEIDIEA
                     LNIASLPTLHFENGEKESLLEVKHLHFSYPNKQVLTDIQLTIHKGERLAIVGKNGAGK
                     STLAKVLCGFIQGEGEILWKGQSIKEDSVKERAERIGYVLQNPNQMISQTMIFDEVAL
                     GLRVRGVTEEEIEHRVHHILKVCGLYPFRNWPISALSYGQKKRVTIASILVLNPEIIL
                     LDEPTAGQDQRHYREMMEFLDQLNAQGHTIVMITHDMQLMLDYSDRAVVVVDGQIIED
                     ASPAEILSDDMVIERANLKETSIFHLAERLGVNPLELTTFYMQEERRGR"
     gene            complement(7279..7602)
                     /locus_tag="U1404_001123"
     CDS             complement(7279..7602)
                     /locus_tag="U1404_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HEM5348084.1"
                     /translation="MAGRFYEAIGFAVATFGDIKSVTLPEGGNLILMQADSFAQRVPF
                     QVVASGNEVLISLNVASRKEVDTLIERVEANSGQITGCPTDARGFYGASFTDLDGHHF
                     NVIVM"
     gene            complement(7859..8842)
                     /locus_tag="U1404_001124"
     CDS             complement(7859..8842)
                     /locus_tag="U1404_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HEM5348085.1"
                     /translation="MSKDIRVLLYYKYVPIENAKEYAAEHLAFCKSIGLKGRILIADE
                     GINGTVSGDYETTQKYMDYVHANPLFSDLWFKIDEENEQAFKKMFVRYKKEIVHLGLE
                     DNDFDNDIDPLVTTGAYLSPKEFKEALLDEDTVVLDTRNDYEYDLGHFRGAIRPDIRN
                     FRELPQWVRDNKEKFMDKRVVVYCTGGVRCEKFSGWMVREGYKDVGQLHGGIATYGKD
                     PEVRGELWDGKMYVFDERIAVDVNHVNPVVVGKDWFDGTPCERYVNCGNPFCNRRILT
                     SEENEHKYVRGCSAECRAHERNRYISENGLTRQEWAERLEAIGETLTPANA"
     gene            complement(9053..9973)
                     /locus_tag="U1404_001125"
     CDS             complement(9053..9973)
                     /locus_tag="U1404_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348086.1"
                     /translation="MVWTEEKLRPIIHSILNPDEEVLSLYQSKTTKSIYGCILWNSYY
                     YKVFRVSNHPSQSTYKQPTFYDFHGEFYMKGAIRTYLYHTNSWYELSKQSYYLLLFFQ
                     KLWDEKQEVEASWQNGRMQIRLVVEEEGWQVHYRFPDNQAREVERLLASGMLVAIRSS
                     RNFIKIRTSRFVAPYIALIKQRQLYRKKPSKAMLQWEKYQSQLIEIQRTYRLVEENAP
                     KTFFGHWLNKVQLYLCSAIASYWEEVIKGVEWQEAREIKDQRKIEKPHNPIEDKWKEN
                     IARRHKRKVDQLIGHDTLEKLRQLKTELDD"
     gene            complement(10081..10626)
                     /locus_tag="U1404_001126"
     CDS             complement(10081..10626)
                     /locus_tag="U1404_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type riboflavin transporter
                     substrate-binding protein"
                     /protein_id="HEM5348087.1"
                     /translation="MKNNSIKTVVATGIGAALFVVIGHLINIPTFVPNTSIQLQYAVQ
                     SLLAVVFGPVVGFLVGFIGHTLKDSLTYGPWWSWILASGVFGLVVGLTKKRLRIQEGI
                     FEGKDILFFNLVQIAANVLAWGVIAPVLDILIYSEAANKVFAQGLVAGIANSITVAIA
                     GTLLLAVYAKSQTKTGSLSKD"
     gene            complement(10647..11495)
                     /locus_tag="U1404_001127"
     CDS             complement(10647..11495)
                     /locus_tag="U1404_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HEM5348088.1"
                     /translation="MSNNLLVLQSDFGLVDGAVSAMIGVALQESRDLVVHHLTHDITP
                     YNIFEGSYRLFQTVEYWPEGTTFVSVVDPGVGSKRKSVVALTEQNHYIVTPDNGTLSF
                     IKKYVGIKAVREISEVANRRANTEHSYTFHGRDVYAYTGAKLASGHISFEEVGPELSV
                     DKIVEIPTVPTEVGSDYVKGAIDILDVRFGSLWTSITREEFYTLQPQFEDRFEVTIYN
                     NDMLVYQNQVTYGKSFADVRIGQPLIYINSLYRVGVAINQGSFAKAYNVGVGQNWHIE
                     IKRISN"
     gene            complement(11927..12643)
                     /locus_tag="U1404_001128"
     CDS             complement(11927..12643)
                     /locus_tag="U1404_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5348089.1"
                     /translation="MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPETN
                     SALKFVIDRAKQAQVPKHIIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSN
                     VNRTAANVRSAFGKNGGNMGASGSVSFMFDKKGVVVFAGDDADAIFELLLEADVEVDD
                     VEAEDGTITVYTAPTDLHKAIVALKESGIQEFNVTELEMIPQSEVSLEGDDLATFEKL
                     YDALEDDEDVQKIYTNVDGF"
     gene            12804..13115
                     /locus_tag="U1404_001129"
     CDS             12804..13115
                     /locus_tag="U1404_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000827864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5348090.1"
                     /translation="MKRNKHLPLTETTYYILLALLEPAHGYHIMQKVEDMSDGDVKIA
                     AGTMYGAIENLLKLKWICSVPSSDKRRKVYQVTATGQEIIKLETQRIQKLHHIAKELG
                     F"
     gene            13126..13752
                     /locus_tag="U1404_001130"
     CDS             13126..13752
                     /locus_tag="U1404_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM5348091.1"
                     /translation="MIRHKLFTSLQEEEHWINSIQSEGYQLVKVTPWTAAYHFEKCSR
                     TPHPVRLDFHEHIAKGEYSNYLSLFEDCGWQPIQGSRRCGIHYFQQTIEASSTEIFSD
                     TESKKAFYSRYQNYAYSYFGLFLTLFFIHYQVGLQNGYTLWNPKSWYLTPELWERTGT
                     SFWFGFLFETPFALFRSGIIPLFFLAWSIYFLHIAEKGKKEAKKLEKY"
BASE COUNT         4225 a         3034 c         2470 g         4057 t
ORIGIN      
        1 tcctcattca attcctcaaa ggtaagcgtt tttctattat atccttcttt ctttaagacc
       61 atgtgatata aatatttcaa attggtttca ttttcagaat cgtaaaataa ataacaacct
      121 gtcgtattat ccagtagaaa ctggttatag tctctaaact gccctgggtt ttcatagcgt
      181 ggataggcat actttacaaa atcaacctgc ttaaaccgtg ctaactttgc ttggttagcc
      241 tcattccact gttcgccatg gttttcaaat ggaaatattg ttgcaatact cagttgatat
      301 ccctcggctc gtaaatcttc taagacttct aaggaccagt attcaaaacc caattgacct
      361 gtcagtataa accaactaac tccctcttct aaaaaacgaa taaaattcct acgaattgca
      421 gatttaataa tgtgcagtcg aggatctttt tctgaaaaaa ttcccaggtc tgtatgtcta
      481 taacctgtta ccaaaaggct cttagtatcc atttcttgta ctcttttcgc taattatggt
      541 ataatatgct gatattattt tatcaagaag gagttctatg gtcaattatc ctcataaggt
      601 gtcaaaaaaa atcaatagaa ccagtcctat ttcatcccag cgagtaaact ttgctaatcg
      661 cggaatgtct tttgaggccg ctatcaacga tagcaatcaa tattaccttg cgcacgatat
      721 tgctgtcatt cacaagaagc caactcccgt gcaaattgta aaagttgatt accccaaacg
      781 gagccgtgct aagattgtcg aagcatactt tcgacaggca tctaccacag actactctgg
      841 tgtttttaaa agacattata ttgattttga agcgaaagag acacgccaaa aagcatccat
      901 gcccatgaaa aattttcatg cgcatcagat tgaacacatg aaacaggttg ttaaacaagg
      961 tggtatttgt tttgtccttc ttcacttttc aacattaaaa gaaacctatc tcttgccagc
     1021 cactcatttg atcgaatttt atcaagtaga catgggtagt aagtcgatgc ctctaacctt
     1081 tattcgacaa tacggctttg agattcaaat ggggcgtttc cccagcatcc catatctgga
     1141 aatcgttgaa aaaaatctat taggtggtga atcttttgaa aactacaaca attaaaaaag
     1201 ctcttctaat cactgcaaat attttacttg cgggggctat cattgcctgc ctggccggag
     1261 ctgcattggt tgtttactac atccaaagcg ctccagaatt gacagaagaa tctttgacag
     1321 caactgtgtc aagtaaaatt tacgataaga acggaaatct tattgcagat ttaggagcag
     1381 aaaaacgttc gagtgccaag actgaagaaa ttccaacaga cttggtaaat gcgattgtcg
     1441 caatcgaaga ccaacgcttc ttcaatcata gaggtgttga cgtgattcgt attgcaggtt
     1501 ccctgattaa taacctgagt ggtggacgtt tgcaaggtgg ctcgacactt gaccagcagt
     1561 ttatcaagct gacttatttc tcgacatccg tagaagatca aaatctaaaa cggaaaattc
     1621 aagaggcttg gctagctact caattggaac gtcgcaatac caaacaagag attttgacct
     1681 actacatcaa caaggtgtat atgtcaaatg gtaattacgg tatgaagact gctgctcttg
     1741 ctttttatgg aaaagagtta aaagatttga ctcttcctca attagctctt ttagcaggaa
     1801 tgccccaagc gccaaaccaa tatgatcctt ataccaatcc agaagatgca aaagcacgtc
     1861 gcgatttggt attggctgag atgctggaag aaaagtacat tgataatccc cagtatgaac
     1921 aagctgttct aacacctgta acagatggtt tgcaaccact atctaatgca gctgcttatc
     1981 ctgcttatat ggacaactat ctgaaacaag tcgttgaaga agttgaagca aaaacaggtt
     2041 acaacttgct gacaacaggg atggatgtct atacgaacgt cgatcctgcc gcccagcagc
     2101 aactttggaa tatctacaat acagatatgt atgtcagcta tccagatgat ttattgcagg
     2161 tagcttcaac ggttgtggat gtttctaatg gtaaagtcgt tgcgcaatta ggtggtcgta
     2221 aacaggaaac aaacgtctca tttggtacca accaatccgt tgaaaccaac cgcgacttcg
     2281 gttctacaat gaagccaatc acagactatg ctcctgcttt tgaaaacggc atttatacat
     2341 ctacagcaga tttaatctta gacggtcctt ataactatcc tggtacacca actcctgtca
     2401 ataactggga taaacaatac tacggtaata tctctgttaa gactgccatt cagtattctc
     2461 gaaatgttac cgccgttaaa gcattggaag ctacgggctt agaaaatgcc ttgaaatttt
     2521 tgaatagcgt tggtatcaat tatccagata ttcattactc taatgctatt tcaagtaata
     2581 catccgatac tagcagtaag tatggagcaa gtagtgaaaa aatggctgct gcctacgctg
     2641 cttttgccaa tggtggtact tactacgctc cacagtatgt caataaaatt gtctttagtg
     2701 atggaacagt aacagaatat gctcctaaag ggaccaaagt catgtctgcc gaaacagcct
     2761 acatgatgac cgatatgatg aaggctgtta tgtcttacgg ttatggatta aacgcttctg
     2821 ttagtggcgt tcctatggcc ggtaaaacag gtacatcaaa ctataccgat agcgaaacgg
     2881 atactattct agcttcaatt ccagaagcaa attatagtta catggtcgtt cctgatgaaa
     2941 acttcgttgg atattctagt cagtacgcaa tggctgtttg gaccggatat accaatcgta
     3001 tgactcctat ccttgataac agcatgcgaa ttgcaacgga tgtctaccac aatatgatgc
     3061 tctttatgca ttcggactat acagctaccg attgggagat gccaagcgga ctcgtacgtt
     3121 acggttccaa ctactatctc agaggtagtc gctcactctc caatgcttat aatacttaca
     3181 ctagctctag tacaagttct tctagttcga ctgaaactag tgaaacaacc gaagcgacga
     3241 caacatcaag cgaaacatca tctggaactg caaccgagac tgcaacttct tcaactgaaa
     3301 ctgcaacaac aggaaacaat cccgcaacgg gacagacaga tggtcaataa gaaaattccc
     3361 agactcttct gggtttttct tttgcttaaa ttatgataag ataagattat gaaacctgaa
     3421 gtattttata aaaccttggc agaccaaggt attcaattaa ctgaccaaca aaaacaccaa
     3481 tttcatcgct atttccaact attagtggaa tggaatgaaa aaatcaatct gacagctatt
     3541 accgaggaaa gcgaagtcta tctgaagcat ttctacgatt ctatcgctcc aatcctgcaa
     3601 ggccatattc agaacgaacc tcttcggctt ttagatattg gagctggatt ccctagccta
     3661 cctatgaaga ttatctttcc gcaactagat gttaccatca ttgattctct taataaacga
     3721 attaactttt tacatttgct tgccgaagaa ctagagctcg aaggtgttca tttctatcat
     3781 ggtcgtgcag aagactttgc acaagataag aacttccgtg cacaatttga ccttgtcaca
     3841 gcacgcgcag ttgcccgcat gcagattctt tctgaattga ctattcctta tttgaagctc
     3901 aacggaaaat taatcgcact caaggcgtcc agcgcagaag atgaattgac ccaagcaaaa
     3961 aatgcactca atctcctctt cgcaaaagtc atcgaaaacc acgactatac tcttccaaat
     4021 ggcgaccctc gaacattgac catcgtcgaa aagaaaaagg aaactccaaa taagtttcca
     4081 cgcaaagctg gtctgccaaa taaaagaccc ctttaaacat aagaaaagag gctgggcaaa
     4141 aagctcaacc tcgcttctca gagttcgtgt caacatctca gcgcagtggt tgattggcag
     4201 atttgttcgt gttttacact ccaaatctga cctaatcaac tgtgcggagg cgggaagacg
     4261 aactcttttt ttgaccagtc gagttctttc ccgctccctc ttttattatc caatttttgt
     4321 aatattggtt gcttgaagac cacgttggcc ttgctccact tcaaatgtca ctttttgacc
     4381 ctcttccaac gatttgaaac tattagactg aatttcagaa aagtgtgcaa atacatctgg
     4441 accgttttct tgagcaataa aaccaaatcc cttttctgca ttaaaccatt taactgtacc
     4501 ttgtaccatt tgtgttacct ctttttattt atttgtaaaa cttatcaaga ggaaaaacaa
     4561 aagatgaaac tgatacttaa actctaaatt tatttacatt ccctactgta acagtatatt
     4621 tcctatatgt caacgataaa gggttgataa gcccaataaa ctcaataatc atcgccacgg
     4681 attatagaat cgaccctgat taataaaaaa tagatagatt gtcacgacta ctagagcaag
     4741 aataaatagc aagacagcgt aatctattct ttgtagaggc tgttgggtat accatgttct
     4801 ttttttattt tttccaaaac gccgcaattc catagccgtt gaaatcgtat caatcctctc
     4861 caaggagctg aaaatcagag gaatgacaag ggatagattc ccttttatac gatccatcaa
     4921 ttttcctttc ttggacaatt ccaaaccacg cgcttcttga gacattcgaa tcgtataaaa
     4981 ctcttcttga atatctggaa tataacgcat ggtcaaactg actgcgtaag caactttgta
     5041 ggatacccca atttgattca agctggaagc aaactgacta ggatgagtgg tcatgagaaa
     5101 gataatcgct aaaggaactg tacaaaaata cttcaagaga agattcacca gataaaatgc
     5161 ttgctgactc gtcaaggaat aaactcccag acctgatagc aagggagtgt ctgctccgta
     5221 aagttccact ccataccgtg gtgcaaacaa gtgaaccatc agggcattca ttgcagcaaa
     5281 aatgattgtc agaattaaaa caagagagat ttctttataa cgaatccctg acattttgaa
     5341 caaggctaga gaaaatactg cgataaaaag aatcaagcgg gtatcataag taatcatagc
     5401 aagaatggaa actatgagaa aaaagagtaa tttactgaca gccgataaac tatgaataaa
     5461 gccagttcct ggatggtaac caattagttt ttgttgactc atcttcctct cctttcttcc
     5521 tgcatataaa acgtcgttaa ttccaaggga ttaactccca acctctccgc caagtgaaaa
     5581 attgatgttt cttttaaatt ggctcgctca atcaccatat catcagataa aatttctgct
     5641 ggactggcat cttcaataat ctgcccatcc accacaacaa cagctctatc tgaataatct
     5701 agcatgagtt gcatgtcatg ggtaatcatg acaatggtgt gcccttgagc atttaattgg
     5761 tccaaaaact ccatcatttc ccgataatgc cgttgatctt gtcctgctgt tggctcatct
     5821 agcaaaataa tttctggatt gagaaccaag atagatgcta tcgttacccg ttttttctgc
     5881 ccataggaaa gtgccgaaat cggccaatta cgaaacggat acaggccaca tactttcaag
     5941 atatggtgaa ctcggtgttc gatttcttct tctgtcaccc ctcgcacgcg caaaccaaga
     6001 gcaacctcat caaagatcat cgtttggcta atcatttggt tgggattctg aagaacataa
     6061 ccaatccgtt ctgctcgctc tttgacagaa tcttctttga ttgactgccc cttccagaga
     6121 atctcaccct caccctgaat aaaaccacaa agcaccttgg ctaaagtaga tttcccagca
     6181 ccattttttc caacaatagc tagacgctct cccttatgaa tcgtcagttg aatatctgta
     6241 agaacttgtt tgttaggata ggaaaaatga agatgcttga cttctaacaa agactctttc
     6301 tctccatttt caaagtgtag agtcggtaga gatgctatat tcaaagcctc aatatcaatt
     6361 tcccaaactg aggagaggtg ttctgcctgc gcaatcggat atcctaaggc gcgaagagtc
     6421 gatagatata agggttcacg gatgccgttt tcctgtaaca atgaggtacg taataaatca
     6481 tccagtcctc cattgaacaa aatccgacca tcattaatca atacaactcg gtccacctga
     6541 cgatacagta cgtcctctaa acggtgttcg ataataatgg ttgtggtccc ttcttgcttg
     6601 tgcagacggt caatcaaatc aatcgtatct tggcctgatt tggggtctaa attagcaagt
     6661 ggctcatcaa acaacaaaat aggactctca tcaataagaa ctccgcccag actgacacgt
     6721 tgcttttgac ctccagataa atcttgtggt cgatgtgcca gcaaatcggt caaagacagt
     6781 ctttctgccc aatctcctac tttttgcttc atcaccacct ggctttccat gtcgttttcc
     6841 aaagcaaaag ctaggtcctc ggcaactgat aagccaatga attgaccatc tgtatcttga
     6901 agaaccgttg atacgagcaa ggacttatca taaactgaaa gattaaaagc ttcctgacca
     6961 tccaatagta aacttccgct atgttccccc ttgtaaatat tgggaataat accattaaga
     7021 cattgtccaa tcgtcgactt tcctgaacca gatgggccaa taatcagaac tttctctccc
     7081 tgataaatcg ttaactgaat atcttttaaa gtgggttcct gttgcgcttg gtatttaaat
     7141 gtaaaatctt taaattcaat gatttttttc ataggactat tatagcgtaa attgactctg
     7201 aaaaaaagga agaatcatca gtttctccct tttcaaataa cttcatctat gattctagag
     7261 tagatgaatt ctaacttcct acatcacaat cacattaaaa tgatgcccat caaggtccgt
     7321 aaaacttgct ccataaaagc cacgggcatc tgtcgggcat cctgtaattt gcccgctatt
     7381 tgcttcaaca cgctctataa gtgtatccac ttctttccta ctcgccacat taagcgaaat
     7441 caagacttca ttgccactcg ctactacctg aaatggtacg cgttgagcaa agctatctgc
     7501 ctgcatcaaa atcaagttgc caccctcagg caaagtcaca gacttaatat ctccaaacgt
     7561 cgcaactgca aaaccgattg cttcataaaa ccgaccagct attcaaggtc tgccactgct
     7621 aatactcaat gaaaatcaaa agtaacctag gaaacgaagc gaagatagaa ctgaagttca
     7681 tcaaggcaag ctgacaacgg ataatgttga ttttcgaaag ggataagttc atccaaaatg
     7741 acttcatctc cttctctttt ccaattgata ggcttcgtat agaatggact gaaaaaatat
     7801 aaagaattct gattgcacaa aaaaattgca ctgatttttc aatgcaattt tggtattact
     7861 aagcatttgc tggagtaaga gtttccccaa tcgcttccaa gcgttctgcc cattcttgac
     7921 gagtcaagcc gttttcagag atgtatcggt tgcgctcatg agcacggcat tcagctgaac
     7981 agccacgaac atacttgtgc tcattctctt ctgatgtcaa aatgcgacgg ttacagaatg
     8041 gattgccaca gttgacatag cgctcacatg gtgtgccatc gaaccagtcc ttaccaacga
     8101 caacagggtt aacatggtta acatcgaccg cgatacgctc gtcaaagaca tacatcttcc
     8161 catcccacaa ttcgccacga acttctgggt ctttaccata ggttgcgata ccaccgtgga
     8221 gctggccgac atccttgtag ccttcacgaa ccatccagcc tgagaatttt tcacagcgaa
     8281 caccaccagt acagtaaaca actacgcgct tgtccatgaa tttctctttg ttatcacgga
     8341 cccattgtgg caactcacgg aagttgcgga tgtctggacg gatcgcacca cggaagtgac
     8401 caaggtcata ctcgtagtca ttacgtgtat ccaaaacaac tgtatcttcg tccaagagag
     8461 cttctttgaa ctcttttggt gataggtagg cacctgttgt cacgagtgga tcaatatcgt
     8521 tgtcaaagtc gttgtcttcc aaaccaaggt gaacaatttc ttttttataa cgaacaaaca
     8581 ttttcttgaa agcttgctca ttttcttcat caatcttaaa ccacaaatcg ctgaacaatg
     8641 ggtttgcatg aacgtagtcc atgtactttt gagttgtttc atagtcacca gaaacagtac
     8701 cgttgattcc ctcatcagca atcaaaatac gtcctttgag tccgatagac ttacagaaag
     8761 ctagatgctc agcagcatat tctttggcat tttcaattgg aacatacttg taatagagta
     8821 gaacgcgaat atcttttgac atagtgtctc cttttcaatc tttgcaatag atgataaaac
     8881 tctgtcattt ctaataaatg ataccttacg attatatcgt ttagcccctc aaaagacaaa
     8941 aatctgaact gaaaatttag aacctgtatt cgcgggttca atgcttatat gtaaaaaata
     9001 cggtaacatg gatggcatgc taccgcattt attgaaggtt cgctataact tcttagtcgt
     9061 ctaattctgt tttcagttgt cggagttttt ccaaggtatc atgtccaatc agttggtcca
     9121 cttttcgctt atggcgtcta gcaatatttt ccttccattt atcttcaata ggattatgtg
     9181 gcttctcgat tttcctttga tctttgattt ctcttgcctc ctgccattcc actcctttaa
     9241 taacttcttc ccaatagctg gcaatggcag agcagagata gagttggacc ttattcaacc
     9301 agtgtccaaa aaaagttttc ggagcatttt cctccactag ccgataggtc ctttggattt
     9361 caataagttg actttggtat ttttcccact ggagcatagc tttactcggc ttttttcgat
     9421 aaagttgacg ctgtttgatt agagctatat acggtgcaac aaaacggctc gtccgtatct
     9481 tgataaaatt tctggaggag cgaatggcca ccagcatgcc tgaggccaat aagcgttcaa
     9541 cctcccttgc ctgattatct ggaaaacggt aatggacttg ccacccctct tcttcaacca
     9601 ctaagcgaat ctgcattcta ccattttgcc aactcgcctc cacctcttgc ttttcatccc
     9661 ataacttttg aaaaaagaga agaaggtagt agctttgttt actaagttca taccaactgt
     9721 tcgtgtgata aaggtaggtc cgaatcgctc ctttcatata aaattcgcca tggaaatcat
     9781 aaaaagttgg ctgtttatat gtagattgtg atgggtggtt actaactcgg aaaaccttat
     9841 aataataact attccaaaga atgcagccat aaattgattt cgtcgttttc gattgataaa
     9901 gacttaaaac ttcctcgtca ggattgagta tagaatgaat aatcggtctc aacttttctt
     9961 ctgtccagac catacttctc cccttgaaca catgtttttg tttgttttat attattatat
    10021 catatatgta ttttttggta ttgaaaaaaa cctagaattt tttctaggga aaataaaaac
    10081 ttaatcttta gacaaactac ctgtcttcgt ttgagatttt gcataaacag ccaaaaggag
    10141 tgtccctgca atagcaactg taatactgtt tgcaatacct gccacaagtc cctgtgcaaa
    10201 aaccttattc gccgcctcac tgtagataag aatatctaaa actggggcaa tgactcccca
    10261 agcaagcaca ttcgccgcaa tctgaacaag gttaaagaaa agaatatctt tcccttcaaa
    10321 aatcccttct tgaatacgta gacgtttttt ggtaagacca acaaccaaac caaagacccc
    10381 tgatgccaaa atccatgacc accatggacc gtaagtcaac gaatccttaa gcgtgtgccc
    10441 aatgaaaccg accaagaagc caactacagg accaaataca actgccaata gcgattgaac
    10501 agcgtattga agctggatag aagtatttgg gacaaaggtt ggaatattga ttaaatgacc
    10561 aataaccaca aagagggctg cgccgatacc agtagcaacg actgttttga ttgaattatt
    10621 tttcataact atctcctaaa atttctttaa ttactaatac gtttgatttc aatatgccag
    10681 ttttgaccta caccgacatt ataagccttg gcaaatgagc cctgattaat cgcaacacct
    10741 acacgataga gggaattgat ataaatcaat ggctgtccga tacgtacatc cgcaaaggac
    10801 ttcccgtagg ttacttggtt ttgatacaca agcatgtcgt tattgtatat ggtcacttca
    10861 aagcgatctt caaactgcgg ttgcaaggtg taaaattctt ccctcgtaat cgaggtccaa
    10921 agcgagccga atcgaacatc cagaatatca attgcacctt ttacatagtc cgaaccaact
    10981 tccgttggga ctgttggaat ttccacaatc ttatccacgc ttaattctgg accaacttct
    11041 tcaaagctaa tgtgtccaga agccaattta gctcccgtat aggcataaac atctcgacca
    11101 tggaaggtgt acgaatgttc tgtattggca cggcgattgg ccacctctga aatttctcga
    11161 accgccttta tccccacata ttttttgatg aaggatagcg tcccattatc tggcgttaca
    11221 atgtagtgat tttgttcggt caaagctact acactcttac gttttgaacc aactcccgga
    11281 tcaacaaccg aaacaaatgt tgttccctcc ggccagtatt cgaccgtttg aaagaggcga
    11341 tatgaaccct caaagatatt gtacggagta atatcatgag ttagatggtg aacaactaaa
    11401 tctctcgatt cttggagagc aacaccaatc atcgctgaaa ctgcaccatc aactaaacca
    11461 aaatctgatt gtaaaacaag taaattattt gacatacatt ctcctaatct tattaccgtt
    11521 ctatgataac agaaaacctg tgaccattca aatagatatt tccaaagcct ggctatagtt
    11581 tttccttata cctcatctat caagcactct actatcagcc accgaaaact cgcaaatttt
    11641 tccatcgtac cttcttcgaa cttaagctaa aatatcccca cttctctagt tccaacaact
    11701 atcgtctttg agtaattgga tataaagaaa accgcctagc gcagttccaa tttccaaact
    11761 tttaagccaa aaattgtcct tgtggacagc tgaaaataaa gaaaaccagc taccgctggt
    11821 tctcatttcc aaccttcgac gtcccacgta caatgagaat catctaccga cgatttcaat
    11881 ttccagcctt ttagtataaa aaaagtgcta ccagcacttt tttatactaa aacccatcca
    11941 cattcgtgta gattttttgg acgtcttcgt cgtcttctag ggcatcgtag agtttttcaa
    12001 atgttgcgag gtcatcgcct tcaagtgata cttctgattg tggaatcatt tcaagttcag
    12061 tgacgttgaa ctcttggatt cctgattctt taagtgccac gattgccttg tgcaaatcag
    12121 ttggggctgt atagacagtg attgtgccgt cttctgcttc tacgtcatcc acttcgacat
    12181 ctgcttcaag gagcaattcg aagatggcgt ctgcatcatc acctgcaaag acaaccacac
    12241 cttttttatc aaacatgaat gatacagaac cagatgcccc catgttaccg ccgtttttac
    12301 caaaagcaga gcgcacgtta gctgccgtac ggtttacgtt tgatgtcaaa gtatcaacga
    12361 taatcataga accatttggt ccaaagcctt cgtaacgacc ttccacgaag gtttcgtctg
    12421 tgtttccttt tgccttgtca atggccttgt caatgatgtg ttttggaacc tgcgcttgct
    12481 tagcacggtc gataacaaat ttcagcgctg agtttgtttc tggatctggg tcaccctttt
    12541 tcgctgctac atagatttca acaccaaatt tggcgtaaac ttttgagtta gcaccgtctt
    12601 ttgcggtttt cttggctaca atattggccc atttacgtcc catggggaac ctcctacatt
    12661 ttataaaatc gctttattat accataaatg gcaaggattg agaagatttt taaaatcttc
    12721 ttcactatac agttgacatg tatagtttct cgatatataa tatatagtac aactatacat
    12781 ttgaactata taggagaagc caaatgaaaa ggaacaagca tctcccctta acggagacaa
    12841 cctactatat tctattagct ctcttggaac ctgcccatgg ctaccatatc atgcaaaaag
    12901 tagaggatat gagtgatggt gatgtgaaaa tcgctgcagg aaccatgtat ggagcgattg
    12961 agaatctttt gaaactaaaa tggatttgtt ccgttccaag ttccgataaa agaagaaaag
    13021 tctatcaagt aacagcaacg ggccaagaga ttattaaact ggaaacacag cgtattcaaa
    13081 aactacatca tattgccaaa gaattaggtt tttaaggagg aagccatgat aagacacaaa
    13141 ttattcacca gtttacaaga ggaagaacat tggattaatt cgattcaatc cgaaggttat
    13201 cagcttgtca aagtaactcc gtggacagca gcctatcatt ttgaaaaatg tagtcgaacc
    13261 cctcatcccg tacgccttga ttttcatgaa catattgcaa aaggagaata ttcaaattac
    13321 ctctctctat ttgaagactg tggttggcaa cctatacaag gtagtcgtag atgtggcatc
    13381 cattattttc agcaaacaat cgaagcttca agcactgaaa ttttttctga taccgaatcg
    13441 aaaaaagcat tctattcacg ctaccaaaat tatgcctact cctatttcgg attatttctg
    13501 actttatttt ttatccatta ccaagttgga ctccaaaatg gatacacact ttggaatcct
    13561 aaatcctggt acctaactcc agaactatgg gaacgaactg gtaccagttt ttggtttggt
    13621 tttctctttg aaaccccatt cgcattgttt agaagtggca ttattccctt atttttcctt
    13681 gcttggtcta tttatttcct ccatatcgct gaaaaaggta aaaaagaagc gaagaaatta
    13741 gaaaaatact gatggcatac tatccaaaag aaaaagattg aaaaga
//
LOCUS       DASGCC010000057        13498 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.057, whole genome shotgun sequence.
ACCESSION   DASGCC010000057 DASGCC010000000
VERSION     DASGCC010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13498
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.057"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..428
                     /locus_tag="U1404_001131"
     CDS             <1..428
                     /locus_tag="U1404_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5348092.1"
                     /translation="SQAVEPSSWSKGWFAQDLINLDEEKTAFENVSCTSLQDRMTILN
                     LLGMLGLSYDKAQQKVANLSGGERVRLSLAKVLLADANLLILDEPTNFLDMAAIEALE
                     TFLKEYEGSVLLVSHDQQFVETSVHRQWEIVQACLVKKS"
     gene            520..2595
                     /locus_tag="U1404_001132"
     CDS             520..2595
                     /locus_tag="U1404_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEM5348093.1"
                     /translation="MKKRKNKPLEHDGNFISLRLNILFSIVIFLFLVLILRLADMQII
                     NHDFYSNKLSTASQKIISNGSIRGQIYDAQGKPLVENEIQQVVSFTRPNKMSAQEMKE
                     VANKLLQWVNVSDVTITQRDKADYYLADEEVYRQVVEALPKDKKYDSDGNYLSESTIY
                     SNAVDSIPAEALQYSEQDNKAIELFKQMNGATYFSTVNLVTDTLTSEQVAHIVANESQ
                     LPGISTTNNWQRTILPTSLSSIIGTVTSEQAGLPAEDAEYYLSKGYSSNDRVGTAYLE
                     KQYEEVLQGQREKKQINLDRNGNIESIETIQEGQQGNNIKLTIDLAFQDGVNAILRKY
                     FESELATGSALYSEGVYAVALNPSTGAVLAMSGYSHEKGSSTITEDALGTITSVFTPG
                     SIVKGATISSGWENGVISGNQVQLDEPIYFAGSAPITSWYGAYGSFNIDATEALEYSS
                     NIYMVKIALGLLGQTYSANMYLNDGDTLKNAMTKLRSTFAEYGLGASTGIDLPLESTG
                     FLPDKYTTANFITNAFGQFDNYTPMQMAQYAATIANNGTRISPHLVEGIYGNNAQGGL
                     GELIETVSGKEMNQVNISAEDMSLLRQGFYQVVNGSGRFNTGSAIGRGAAVTISAKTG
                     TAETYTTTASGDVVTAINTNVVAYAPSDNPQIAVAVVLPNLTNQSSTTTKTITQEIIN
                     LYQSLHPMN"
     gene            2604..3200
                     /gene="recR"
                     /locus_tag="U1404_001133"
     CDS             2604..3200
                     /gene="recR"
                     /locus_tag="U1404_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEM5348094.1"
                     /translation="MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFA
                     KNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQSTILIVEDSRDVTALENIQEYHG
                     LYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
                     KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL"
     gene            3305..4351
                     /locus_tag="U1404_001134"
     CDS             3305..4351
                     /locus_tag="U1404_001134"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEM5348095.1"
                     /translation="MSKETLILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIS
                     QTGDFIKTQEFSQTPSADEKLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGS
                     IQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVAVIEGENIDDKIAE
                     IEGKLTYPVFVKPANMGSSVGISKAEDLAGLHKALDLAFKYDSRVLVEQGVNAREIEV
                     GLLGNADVKTTLPGEVVKDVAFYDYDAKYIDNKITMEIPAKIDEAIMDTMRDNAAKAF
                     RAIGGCGLSRCDFFLTEDGDIFLNELNTMPGFTQWSMYPLLWDNMGLAYPDLIEELVR
                     LAKEMFEKRESHLI"
     gene            4439..4819
                     /locus_tag="U1404_001135"
     CDS             4439..4819
                     /locus_tag="U1404_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM5348096.1"
                     /translation="MYQTIVKGEGLFQALSQGYGESIRTFGVTEKGETPVSLVNIGLA
                     ACITMCVQGYYASQEGNKTMPVQVESRLDNQRFEVLIGIGESVSAQKQKEILAYVEKK
                     CKVKALLREDLQFETSFYVLESVE"
     gene            4821..5897
                     /locus_tag="U1404_001136"
     CDS             4821..5897
                     /locus_tag="U1404_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348097.1"
                     /translation="MFLAIEEMRQNKLRYGLILGLLILISYLVFFLTGLAYGLMQENR
                     TAVDKWQADYVLLNSESNRLITASKIDTSLLDQVDASDKALIRQQAGVAYVDENATSD
                     EKEKVNIFAVESDSFIVPNIVEGRLYEKTGEVLVDKTLSEVEGFGLGDQIYLSGSDEK
                     VTIVGYTDNAYFGVAPVVYMDFTAFAELMQADKQQAATSNLASAIVVRGDAASLPNEL
                     EKVAIADFIENLPGYKAQNMTFGFMIGFLIVISAIVIGIFIFVLTTQKSPIFGLMKIQ
                     GLSNGYISGSVLAQTFLLAGVGTVLGLAGTYLSSLVLPSAVPFENNWTFYIAIGLALV
                     VFALLGASFSVRSIFKVDPLRNLS"
     gene            5907..6575
                     /locus_tag="U1404_001137"
     CDS             5907..6575
                     /locus_tag="U1404_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348098.1"
                     /translation="MKTLIFENISKTFQDGSQTITALKPINFSIEEGEFVAIIGPSGS
                     GKSTFLTLAGGLQTPTTGRVLINQSDYSDLPEKKRAKLRYKDIGFVLQASNLIPFLTV
                     EKQLTLVDKVNKKADPSKRNELLSELGVDHLKNKFPKDLSGGERQRVAIARALYNDPA
                     LILADEPTASLDSNRAFEVVELLAKEAKERNKSIIMVTHDQRMIEKCDKVYEMKDGVL
                     TQIR"
     gene            6944..8305
                     /locus_tag="U1404_001138"
     CDS             6944..8305
                     /locus_tag="U1404_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEM5348099.1"
                     /translation="MKLTLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVP
                     LKGARDGHDFIPVAFENGCVVTLSEVSLDVPHILVEDCLAALQQLAAYYLEKTGVEVI
                     AVTGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQ
                     DHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPA
                     YPIADKLLPSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATN
                     AMVASYVGKTLGVSNEAIKSALASLNLTRNRTEWKKAANGADILSDVYNANPTAMRLI
                     LETFSSIPANEGGKKIAVLADMKELGSQSVELHNQMILSLSPDVLDTVIFYGQDIEGL
                     AQLASQMFPIGKVYFFRKNAEQDQFGDLVKQVKEVLGGKDQILFKGSNSMNLGKVVEA
                     VEK"
     gene            8396..9094
                     /locus_tag="U1404_001139"
     CDS             8396..9094
                     /locus_tag="U1404_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02206 family membrane protein"
                     /protein_id="HEM5348100.1"
                     /translation="MSDFFSNQISEAPNLNVLEHLFLMIIWFFMLHLCFRCYQKRWVH
                     IVFWWLQFIQIVSLYTWYIVADSPLSESLPFYHCRLAMLFILWAKPGPLKRYFAYLGL
                     FGSLAAFIHPVFDPFAFPHLTFFTFVIGHYALTVNCMLYLLSDLEGEMLKGKEVVKYT
                     LIMNMLILGVALLTGGNYGFLRQAPLVNTNNLPLNFFLVTCLLCFSILSVQAMLIAYL
                     KKESKQMDSQILKK"
     gene            complement(9125..11461)
                     /locus_tag="U1404_001140"
     CDS             complement(9125..11461)
                     /locus_tag="U1404_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5348101.1"
                     /translation="MNKQIKGLSTKEVQERIQNQQTNHFKTKTSASNWEIFRRNVFTS
                     FNALNFAIFLALLAVQAWSNLFFFGVIVLNAVSGMLTEWRARRMIDKLNLMNKDFIRV
                     VRDSKTLSLAPEDIVLDDVLLLSAGEQVPSDAIVLEGIAEANEAMLTGESDLIVKNTG
                     AELLSGSYLVSGQIYAKVIHVGAENYANKLMLEAKTHKPIVSRILYNMDKIAKFTGKI
                     IIPFGLALFLEAFFIKLLPLKDSVITSSTALLGMLPKGIALLTITSLLTAVIKLGMKN
                     VLVQEMYSVETLARVDVLCLDKTGTITQGKMTVENLLPLTNHYSLDTIQQILATYIQT
                     SEDTNSTAQAIRKEYGDLEHHYKASHIIPFSSDRKWGAMTIENIGRIFLGAPEMLLTQ
                     NPPSVSEAQARGSRVLILALSQQSLPSSQNQLPENIEPLALLEIADPIREDAAETLAY
                     LRSQEVTLKIISGDNPVTVSHIAKEAGFADYDSYIDCSKVDDEELIARAETTAIFGRV
                     SPHQKKLLIQTLKAQGHTTAMTGDGVNDILALREADCSIVMAEGDPATRQIANLVLLD
                     SEFRDIPEILFEGRRVVNNISHIAPIFLIKTIYSFLLGLICIASIALGKAEYLLVFPF
                     IQVQMTLIGQFVEGFPPFILTFERNIRPVEKHFLRKSLLLALPNALMVVLSVLIFHLM
                     QVFGYLNLHDMQTLSYYVLGSTGLLAVIRACLPLTKARLALIIYSVFGFFISSHFLHG
                     LIEIHPLNSHTLPIYSGLMLIFIPVFFWISYKQGAFKN"
     gene            11698..13242
                     /locus_tag="U1404_001141"
     CDS             11698..13242
                     /locus_tag="U1404_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEM5348102.1"
                     /translation="MSLQEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVK
                     GKKTGNFAKSDWMDIEKQRGISVTSSVMQFDYAGKRVNILDTPGHEDFSEDTYRTLMA
                     VDAAVMVVDSAKGIEAQTKKLFEVVKHRNIPVFTFINKLDRDGREPLDLLQELEEVLG
                     IASYPMNWPIGMGKSFEGLYDLHNKRLELYRGDERFASLDEGDKLFGSNPFYAQVLDD
                     IELLAEAGNEFSEQAILDGDLTPVFFGSALTNFGVQTFLDTFLEFAPEPHGHKTTTGD
                     VIDPLNKDFSGFVFKIQANMDPRHRDRIAFVRVVSGEFERGMAVNLPRTGKGAKLSNV
                     TQFMAESRENVENAVAGDIIGVYDTGTYQVGDTLTVGKNKFEFEPLPTFTPEIFMKVS
                     AKNVMKQKSFHKGIEQLVQEGAIQLYKNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAE
                     VVMTPMGKKTVRWIKPEDLDERMSSSRNILAKDRFDQPVFLFENDFALRWFADKYPDV
                     ELEEKM"
BASE COUNT         3937 a         2567 c         3081 g         3913 t
ORIGIN      
        1 gctcccaagc agttgagcct tcaagctggt caaaaggttg gtttgcacag gatttgataa
       61 accttgatga agaaaagact gcttttgaaa atgttagttg tacctctctt caagatagga
      121 tgacgattct caatttatta ggtatgttag gactttctta cgataaggct cagcagaagg
      181 tagcaaatct gtctggtggt gagcgtgttc gtctctcctt agctaaggta ttgttggcgg
      241 atgcgaatct tttgatatta gatgaaccga caaattttct agatatggca gctattgagg
      301 ctttggaaac attcttgaaa gaatatgaag gaagtgtcct cttggtttcc catgatcaac
      361 agtttgtgga aacatctgtt cacaggcaat gggagatagt gcaagcttgt ctcgtgaaga
      421 aatcataaga aaatattttc tgaaaaggag gctctgtcta aaaaatattt tttgcctgtg
      481 gtataataag aaggatattt ctagaatgag gtctttgaag tgaaaaaaag aaagaacaag
      541 cctttggaac acgatggaaa ttttatttcc cttcgtttaa atattttatt ttctatcgtg
      601 attttccttt tcctagtttt gatattgcgt ctggcagata tgcagatcat caatcatgat
      661 ttttatagta ataaactgtc tactgccagt cagaaaatca tcagcaatgg ctctattcgc
      721 gggcagattt acgatgcgca gggaaaacct ttggttgaaa acgagattca gcaggtcgtc
      781 tccttcacac gtcccaacaa gatgtctgct caggaaatga aagaagtagc taataaactc
      841 ttgcagtggg tcaatgtttc agacgtaaca attactcaac gtgataaggc tgattattat
      901 ttggcagatg aagaggttta tcgtcaggta gtcgaggcct tgccaaaaga taaaaaatac
      961 gattccgatg gtaactactt gagcgaatca acaatttatt ctaatgcagt tgatagtatc
     1021 cctgccgaag cattacaata ttctgagcaa gacaataaag cgattgaact cttcaagcag
     1081 atgaatggag ctacttactt ctctactgtt aatttggtaa cggatactct gacttctgaa
     1141 caggttgctc atatcgtagc caatgaaagt caacttccag gcatttcaac gaccaataac
     1201 tggcaacgga cgattttacc aacttccctc agctccatta tcggtacagt aacgagtgaa
     1261 caggctggtt tgcctgcaga agatgcagaa tactatctat ccaagggcta ctcttcaaat
     1321 gaccgtgtgg gaactgccta cctcgagaaa caatatgaag aagtcttgca aggtcaacgt
     1381 gagaaaaaac aaataaacct agatagaaat ggaaatatcg aaagtattga gacaatccaa
     1441 gaaggacagc agggaaataa tattaaactg actattgatt tagcctttca agatggggtc
     1501 aatgctattt tgagaaaata ctttgaaagt gagctagcta ctggtagtgc gctttactcg
     1561 gaaggtgttt atgcagttgc attaaatcct tctacaggtg cagtacttgc tatgtcagga
     1621 tatagtcacg aaaaaggttc aagtactatt acggaggatg ctcttggtac cattacaagt
     1681 gtctttacac caggttccat cgtcaaagga gcgacaatca gctctggttg ggaaaatgga
     1741 gttatcagtg gtaatcaggt tcaattagat gaaccaatct attttgcagg ttcagcacca
     1801 attacatctt ggtatggggc ctatggtagt tttaatattg atgcgacaga ggctctggaa
     1861 tattcttcta acatctatat ggttaagatt gctttgggac tactcggtca gacctactca
     1921 gctaacatgt atttgaatga tggtgataca ttgaaaaacg ccatgactaa gcttcgttcg
     1981 acttttgcag aatatggtct tggtgcttct acaggtattg accttccact cgaatctaca
     2041 ggatttttac cagataagta tacgacagcc aactttatta ccaacgcttt tggacagttt
     2101 gataactata caccgatgca gatggcacag tatgcagcga ccattgcgaa taatgggaca
     2161 cggatttctc ctcacctcgt tgagggaatt tatgggaata atgcccaagg tggtttggga
     2221 gaattaattg agaccgtatc tggtaaggag atgaatcagg ttaatatctc cgctgaggat
     2281 atgtcacttc ttcgtcaagg tttctaccaa gttgtcaatg gtagtgggcg ctttaataca
     2341 ggtagtgcta tcggtcgtgg tgcggctgtg accatcagtg ccaagactgg tacagccgaa
     2401 acctatacaa caacagcttc aggagatgtg gttactgcga tcaacaccaa cgttgttgct
     2461 tatgcgccta gtgataatcc tcaaattgcg gtagcagttg tcctaccaaa tttgaccaat
     2521 caaagttcaa caactactaa aacaattact caagaaatta tcaatttata tcaatcactt
     2581 cacccaatga attaaggagg cttatgcttt accctacacc tattgccaag ttaattgata
     2641 gctattctaa attgccaggt atcggtataa aaacggctac ccgtttagct ttttatacta
     2701 ttggcatgga ggatgatgtc gttaatgagt ttgcaaaaaa tttattggca gccaagcgag
     2761 acctatctta ttgctctatt tgtggtaatt tgacagatca ggacccctgt gctatttgcc
     2821 aggactcaac gcgagaccaa tctactattt tgattgtaga ggatagtcga gatgttacag
     2881 ccttggaaaa tattcaagaa taccacggtc tttatcatgt cttgcatggc ttgatttctc
     2941 ccatgaatgg tattggacca gatgatatta atttgaaaac cctcctcact cgcctgatgg
     3001 acaatgaggt tacagaagtt attgtggcga ccaatgcaac agcagatgga gaagctacat
     3061 ctatgtatat ctcacgtgtc ctcaaacctg cgggaatcaa agtaacccga ctagctcgtg
     3121 gcttagcggt aggcagtgat attgaatatg cagatgaagt gaccctgttg agggctattg
     3181 aaaaccgcac agagctatag ctgttctgta gttagatacg ttcctaattt taagatagga
     3241 tagatatgat ttgttaaatt atgctatact aagagtaata gcgttgatac aggaaggaaa
     3301 atatatgtca aaagaaacct tgattttact atatggtggg cgttctgcag agcgtgaggt
     3361 atctgttctg tctgccgaaa gcgtcatgcg tgctatcaat tatgataaat tttttgtcaa
     3421 aacctatttc attagccaga caggggactt tattaagacg caagagtttt ctcaaacacc
     3481 gtctgccgat gaaaaactca tgacaaacgc gacgattgtt gaagagcaaa aaatccgtcc
     3541 gagcgatatt tatgaagaaa aggcggttgt tttccctgtt cttcatggcc caatgggaga
     3601 agacggatct attcaaggct tcttggaagt gcttcgtatg ccttatgttg gcactaatat
     3661 cttgtcttca agcgttgcta tggacaaaat cactaccaag cgcgtacttg aatcagcagg
     3721 aatctcccaa gtaccttatg tggcagttat cgagggtgaa aatattgacg ataagatcgc
     3781 agagattgaa ggaaaattga cttatccggt ctttgtaaaa ccagctaata tggggtcaag
     3841 tgtcggtatc tcaaaagctg aggatttagc tggcttgcat aaggcacttg atctggcctt
     3901 caagtatgac agccgtgtcc tcgttgagca gggtgttaat gcgcgtgaga ttgaggtcgg
     3961 tcttttggga aatgctgacg tgaaaaccac ccttcctggc gaagtagtca aagacgttgc
     4021 tttttatgac tacgatgcca aatacatcga caacaaaatc accatggaaa tcccagctaa
     4081 gattgacgag gctatcatgg acaccatgcg tgataatgct gccaaggcct tccgtgccat
     4141 cggtggttgt ggactttctc gctgtgattt cttcctgaca gaagacggcg acatcttcct
     4201 gaatgagctc aataccatgc caggctttac ccagtggtct atgtatccac tcctttggga
     4261 taatatgggc ctagcttatc cagacttgat tgaagagctt gttcgtttgg ccaaagaaat
     4321 gtttgaaaaa cgcgaaagtc acctcattta attattatca agattggaat cattccaatc
     4381 ttttttcttg caaaggtttg caaaaaggaa taaaatggaa caagttctgg aggtgtttat
     4441 gtatcaaacg atagtaaaag gggaaggtct gtttcaggct ctttctcaag gttatggcga
     4501 atcaattcgt acctttgggg taacggagaa gggtgagact ccggttagtc tagttaatat
     4561 tggcttagct gcctgtatca ccatgtgtgt gcagggctac tatgccagcc aagaaggcaa
     4621 taaaaccatg cctgttcagg tggagagtcg cttggacaat cagcgttttg aggtgttgat
     4681 tggaattggt gagtcggttt cagcgcagaa gcagaaagag attcttgcct atgtggaaaa
     4741 gaaatgtaaa gtcaaagctc ttttgaggga agacttgcag tttgagacaa gtttttatgt
     4801 cttagaaagt gtggagtaag atgtttttag caattgaaga aatgcgacaa aataagctgc
     4861 gttatggctt gattttagga ttattaatcc tgatttccta cctggtcttt ttcctgacgg
     4921 gtttggctta tggtctcatg caggaaaata gaacagcagt tgataaatgg caggcagatt
     4981 atgtcttgct taattcagaa agcaatcgct tgataacagc atccaaaatt gatacgagtc
     5041 tgcttgatca ggtggatgct agtgacaagg ccttgattcg ccaacaagct ggagttgcct
     5101 atgtggatga aaatgccacc tcagacgaaa aagaaaaggt aaacatcttt gctgttgaat
     5161 cagatagttt tatcgttcca aatattgtag aaggtcgttt gtatgaaaaa acgggagaag
     5221 tccttgtaga caaaaccttg tcagaagtag aaggttttgg gcttggagat caaatctatc
     5281 tgtcaggttc tgatgaaaaa gtgactattg taggttatac agacaatgct tattttggag
     5341 tggcgcctgt tgtatatatg gactttacgg catttgcaga attgatgcag gctgataaac
     5401 aacaagctgc aacgagtaat cttgctagtg ccattgtcgt tcgtggcgat gccgcttctc
     5461 taccaaatga gctggaaaaa gttgccattg cagactttat tgaaaatcta ccaggatata
     5521 aggcacaaaa tatgaccttt ggctttatga taggattctt gattgtcatt tctgccattg
     5581 ttattggtat ttttatcttt gttttgacaa cacagaaatc tccgattttt ggcttgatga
     5641 aaattcaagg tctttcaaat ggctatattt caggttctgt attggctcaa accttcctac
     5701 ttgctggtgt gggaacagtc cttggattgg ctgggactta tttgtcatcc cttgtcttgc
     5761 caagcgctgt tccatttgag aataactgga ccttctatat tgcaatcggc ctagcactag
     5821 ttgtatttgc cctattgggt gctagtttct ctgtacgttc tatctttaag gtagatccat
     5881 tacgaaatct atcttaggag gttgttatga aaacacttat ttttgaaaat attagtaaga
     5941 ccttccaaga tggcagccaa accattacgg ctcttaaacc aataaatttt agtattgaag
     6001 aaggcgaatt tgttgccatc attggaccat ctggttctgg gaagtcaaca tttttgacct
     6061 tggcaggtgg tttacaaaca cctacaacgg gtcgtgtttt aatcaatcaa tcggactatt
     6121 ctgatttacc tgagaaaaaa cgtgccaaat tgcgctataa ggacattggt tttgtcttgc
     6181 aggcttccaa tttgattcca tttctaacag tcgaaaaaca attaaccttg gttgataagg
     6241 tcaataagaa agctgatccg agcaagcgaa acgaactcct atctgaattg ggtgtggacc
     6301 atctcaaaaa caagttccct aaggatttgt caggcggaga acggcagcgt gtagctattg
     6361 ctcgtgcact ttataacgat ccagctttga ttctagctga tgaaccaaca gccagtctag
     6421 acagtaatcg cgcttttgaa gtggttgagt tattagctaa ggaagccaaa gaacggaaca
     6481 aatccatcat catggtaaca catgaccagc gcatgattga aaaatgcgac aaggtttacg
     6541 agatgaaaga tggtgtcctc actcaaattc gataaaaaat ggtataatgg gagcgggaaa
     6601 gaactcgact tgtcaaaaaa gagttcgtca acaagttttt atttctagtt gttgagctga
     6661 aacagtctat tcccagactg tttcactccc acccccgcac agctcaaact gtctgggaga
     6721 cagtttgagg ttggaaataa agcgaacact gatcgcatca gtaggtagga cagatttgga
     6781 gtgtaattac gaacagttga aatttgcttc gcaaatccca tctccaacct ttaatagtcc
     6841 actggactat taaagccaat caaccactgc gctgggatgt tgacgcaaat tttgagacgc
     6901 ggtgtggggg tggaaactag cctttagttt attggagaaa acaatgaaat taaccctaca
     6961 cgaagtcgct caggtcttgg gcgcaaaaaa tgatattagt ctttatcctg atagagcatt
     7021 caacaaggtc gagttcgaca gtcgcctgat tacagaaggg gatctttttg ttcccctcaa
     7081 gggagcgcgt gacggtcatg actttattcc tgtggctttt gaaaatggct gcgtagtaac
     7141 cctgtctgaa gttagccttg atgttcctca cattctagta gaggactgct tggctgcgct
     7201 tcaacaatta gcggcttact acctagagaa aacaggggta gaagtcattg ctgtgacagg
     7261 atcaaacggt aaaacgacca ccaaggacat gattcacgat gttctggcga cgacttacaa
     7321 gacttataag acacaaggca actacaacaa cgaaatcggt ctgccataca ccgtcctcca
     7381 catgcctgat gatacagaaa aactggtctt ggaaatgggc caagaccact tgggagatat
     7441 tcatcttcta tccgaaattg ccaaaccaag tctatcagtt attacccttt ttggtgaagc
     7501 gcatttagaa tttttcggct cacgagaaga gattgccaaa ggaaaattac agattgcaga
     7561 tggaatggag ccaggtagta aactcttgat cccagcatat ccgattgcgg ataagctctt
     7621 gccgagccat gtagacctca ttcgcttcgg tgagcaggct gatttgcagg tgactagtct
     7681 ggtcgagtca aaagatagcc tgaccttcac cgtcaatttt atggacggcg acattttcct
     7741 cccggtaacg ggcaagtaca atgccaccaa tgctatggta gcaagctatg tgggcaagac
     7801 cttgggtgtg tctaatgagg ccatcaagtc agccctagcc agtctaaact tgacccgcaa
     7861 ccgtaccgag tggaagaagg cggcaaatgg agcagatatt ctcagcgatg tctacaatgc
     7921 caatccaacg gctatgcgct tgattttaga aaccttctct agtattccag ccaatgaagg
     7981 cggtaagaaa attgctgtgt tagcagacat gaaagaactt ggcagtcagt cggttgagct
     8041 tcataatcag atgattttga gcttgtcgcc tgatgtgcta gacaccgtca ttttctacgg
     8101 tcaggatatt gaaggcctgg cccagttggc tagtcagatg ttcccaatag gaaaagtcta
     8161 tttctttagg aaaaatgcag agcaggacca atttggagac ctggtgaaac aagtcaagga
     8221 agtcctcggt gggaaagacc aaatcctctt taaaggctct aattccatga atcttgggaa
     8281 agtagtggaa gcagtagaaa agtagagagg cgagacctct cttttttggc aagtcttgtc
     8341 aaaacatcga aaagttgata tactgacttt tggggaaaga gaggaattta ataagatgag
     8401 tgattttttc agcaatcaga tttctgaagc accgaacctg aacgtattgg aacatctgtt
     8461 tctcatgatt atttggtttt tcatgctcca tctttgtttt cgttgttatc aaaaaagatg
     8521 ggttcatatt gttttttggt ggcttcaatt tatacagatt gtctcccttt atacttggta
     8581 tatcgtagct gattctcctc tttcagagag tcttcctttt tatcattgtc gcttggctat
     8641 gctttttatt ctttgggcga agcccggacc tttgaaacgt tattttgcct atctcggtct
     8701 ttttggatcg cttgcggctt ttattcatcc agtatttgac ccgtttgctt ttccacatct
     8761 aaccttcttt acttttgtta ttggccacta tgctttgacg gttaattgta tgttgtacct
     8821 gttatctgat ttagaagggg agatgttgaa gggaaaagag gtagtgaaat atacgcttat
     8881 tatgaatatg ctgattctag gagtagctct tttaactggc ggaaattatg gatttttgag
     8941 acaggcacct ttagtgaata ctaataatct tcctttgaat ttcttcttgg taacttgcct
     9001 actctgcttc tctattttga gtgtacaagc tatgttaatt gcctatttga aaaaagaaag
     9061 caaacaaatg gattcgcaga tattgaaaaa ataagacttg aaattagttt ttcaagtctt
     9121 atttttagtt tttaaatgcg ccttgtttgt agctaatcca gaaaaagaca gggataaaaa
     9181 tgagcattaa tccagaatag attggcaatg tgtgactgtt tagggggtgg atttcaatca
     9241 gaccatgtag gaaatgggag ctgatgaaga aaccgaaaac ggaataaata ataagagcca
     9301 gtcgagcttt tgtcagtggc aaacaggcac gaatgacagc cagtagacct gttgaaccaa
     9361 gaacataata agagagggtt tgcatgtcat gcaagtttaa gtatccaaat acttgcatta
     9421 aatggaaaat aaggacactg agaacaacca tgagagcatt tggtagggct aagagaagag
     9481 attttctgag aaaatgtttt tctacagggc ggatatttcg ttcaaaagtt aggataaaag
     9541 gaggaaaacc ttcgacaaat tgaccaatga gggtcatttg tacttgaata aatgggaaaa
     9601 ctaacaaata ttctgcttta cctagggcaa tactagcgat acagataagg ccaagtaaga
     9661 aagagtagat tgttttgata agaaagatgg gagcaatgtg ggagatgtta ttaacaacgc
     9721 gtcgtccctc aaagagaatc tcaggaatat cgcgaaattc agaatctagg aggactagat
     9781 tagcgatttg tctagtagcc ggatcgcctt ctgccataac aatggaacaa tcagcttcgc
     9841 gtagtgcaag aatatcattg accccatcac cggtcattgc agtagtatgt ccctgtgctt
     9901 tgagggtttg gatgagcaat tttttctgat gtggggatac gcgaccgaaa atggcggttg
     9961 tttcagctct ggcaattagt tcttcgtcgt caactttgga acaatcgata tagctatcgt
    10021 agtcagcaaa tccagcttcc ttagcaatgt gtgagaccgt cacaggattg tcaccagaga
    10081 ttatttttag tgtcacttct tgcgagcgaa gataggccag tgtttctgcg gcgtcttctc
    10141 ggatagggtc agcaatttct aatagagcta gaggttcaat attctcaggt agctgatttt
    10201 gagaagaagg aagggactgt tggctaagcg caagaatcag gacacgggaa ccacgagcct
    10261 gtgcctcaga aacagaagga ggattttgtg ttagtaacat ttctggtgcc cctagaaaaa
    10321 tgcgaccaat gttttcgatt gtcattgctc cccattttct atcgctagaa aatggaatga
    10381 tgtgactagc cttatagtgg tgctctaaat caccatattc ttttcgaatg gcctgagctg
    10441 ttgaattagt atcctcactt gtctggatat aggtagcgag tatctgttgg atagtgtcaa
    10501 gtgaataatg gttggttaag gggagcaggt tttcgacggt cattttcccc tgagtaatcg
    10561 ttccggtctt atctaaacaa agaacatcaa ctcgggcaag tgtttcgacg gaatacattt
    10621 cttgtacgag gacatttttc attcccagtt tgataacagc agttaagaga gaagtgatgg
    10681 tcagcagagc aattcccttt ggtaacatac ctagtagggc agtagagcta gtaataactg
    10741 agtcttttaa gggaagaagt ttgatgaaaa atgcttctag aaaaagagca agtccgaatg
    10801 gaatgataat ttttcctgta aatttagcaa ttttatccat attgtaaaga atacgagaga
    10861 cgataggttt gtgagttttc gcctcaagca tgagcttatt ggcatagttt tccgcgccaa
    10921 catggatgac ttttgcataa atctgtccgc taactagata gctaccagac aataattcag
    10981 ccccagtatt tttcacaatc aagtcgcttt caccggttaa catggcctcg tttgcctcgg
    11041 ctataccttc taaaacaata gcatcactag gaacttgttc gccagcagac agcaagagaa
    11101 catcatctaa aacaatatct tctggtgcaa gagagagtgt cttactgtca cgaacaactc
    11161 ggataaaatc cttgttcatc aggttgagtt tgtcaatcat tcgtcgtgct cgccattctg
    11221 tcagcattcc tgaaacagcg ttgaggacaa taactccgaa gaagaaaagg ttggaccatg
    11281 cctgaacagc tagtaaggct aagaaaatgg caaaattgag tgcgttaaaa gatgtaaaca
    11341 catttcgtct gaagatttcc caattactag cactggtctt tgtcttaaaa tgattggttt
    11401 gctggttttg aatacgttct tgtacttcct tggttgataa accttttatt tgtttgttca
    11461 ttattttatc tttctttttc tagtatatag aatacatctc atacttattg taacatattt
    11521 ataatacaac agtataggtc tgtagaccta ttcttcaata gtttgaaaaa ttcccttatt
    11581 tccgatataa taagagagtt gtctagtaaa gaataaggat gaatccagtg taaatcgaat
    11641 aggataagag ctcagctctg ctatgaatca aaatacaaag aatgaaaagg aaacattatg
    11701 tcactacaag aagaaatcaa gaaacgccgc acctttgcga ttatctctca cccggacgcg
    11761 gggaagacca ctattactga gcagttgctc tactttggtg gtgaaattcg tgaagcaggt
    11821 acggtcaagg ggaaaaagac tggtaacttt gccaaatctg actggatgga tattgagaag
    11881 caacgtggta tctctgttac ctcatctgtc atgcagtttg actatgcagg caagcgggtc
    11941 aatatcctag atacaccagg gcacgaggac ttctcagaag acacttaccg taccttgatg
    12001 gcggtggatg cggctgtcat ggtggtggac tctgccaagg gtatcgaggc ccagaccaaa
    12061 aagctctttg aggttgttaa gcaccgcaac attcctgttt tcacttttat caacaagttg
    12121 gaccgtgacg gtcgtgagcc acttgattta ttgcaggagt tggaagaagt cttgggcatt
    12181 gccagctatc caatgaactg gccgattggt atggggaaat ccttcgaggg actctatgac
    12241 ctccataaca aacgtttaga actctatcga ggtgatgagc gttttgccag cttggacgaa
    12301 ggcgacaagc tctttggttc taatcccttt tatgcacagg ttttggatga tattgaactt
    12361 ctggcggaag ctgggaatga attttcagaa caggcgattt tggacggcga tttgacacct
    12421 gttttcttcg gctcagccct gacaaacttt ggtgtgcaga ccttccttga caccttcttg
    12481 gaatttgctc cagagccaca tggtcacaag acaacgacag gggatgtcat tgacccgctc
    12541 aataaagatt tttcaggctt tgtcttcaaa atccaagcca acatggaccc tcgtcaccgc
    12601 gaccgtatcg cctttgtccg tgtggtttcg ggcgaatttg aacgcggtat ggcggttaac
    12661 ctgcctcgta caggtaaggg agccaagttg tccaacgtga cgcagttcat ggccgagtcc
    12721 cgtgagaatg tggaaaatgc agtagcgggt gacattatcg gggtttatga tacagggacc
    12781 tatcaggtag gagatacctt gaccgtcgga aagaacaaat ttgagttcga accgctaccg
    12841 accttcaccc ctgaaatttt catgaaagtt tctgctaaaa acgtcatgaa acaaaaatcc
    12901 ttccacaagg gaatcgagca actggtacag gaaggggcta tccagctcta taagaactac
    12961 cagactggcg agtatatgct gggtgccgtt ggtcagctcc agtttgaagt tttcaaacac
    13021 cgcatggaag gcgagtacaa tgccgaagta gtcatgactc caatgggtaa aaagacagtc
    13081 cgctggatca agccagaaga cctggatgaa cgcatgtcat caagccgcaa catcctagcc
    13141 aaagaccgct ttgaccaacc agttttcctt tttgaaaacg acttcgccct ccgctggttc
    13201 gcggacaaat atccggatgt ggagttggaa gagaagatgt agcggaaaga cagaaatcag
    13261 taatcaacaa agttgatttg atttcgtcgt ctttccctcg caagggcgtc caaagaactc
    13321 gagcaatgcg aagagtgatt tgctgacgcc tactgcgtcg aggttcagtg aaccttttct
    13381 agtgggagat gtgaactgac ggtagtcagt tcacattgat aaagataact ataaaaggat
    13441 atgatagaat acatgaagct gggcaagacc tctatgatgt cttgcccagc ttcatttt
//
LOCUS       DASGCC010000058        13161 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.058, whole genome shotgun sequence.
ACCESSION   DASGCC010000058 DASGCC010000000
VERSION     DASGCC010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13161
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.058"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(216..668)
                     /locus_tag="U1404_001142"
     CDS             complement(216..668)
                     /locus_tag="U1404_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM5348103.1"
                     /translation="MEHIKDIWQEMYEKAKGHYAPHYVSPFIYSNHVVAAIEAEDGQI
                     YTGYCFEATAGVFHLCAERAAAFNMFQDSGQTTIKRIIAFRNQAPSGEGSGMPCGACR
                     EFLMQLSAENAQTEIMVDFDKRETITLGELMPYWWGEERMQAGTDHLE"
     gene            complement(743..3361)
                     /gene="alaS"
                     /locus_tag="U1404_001143"
     CDS             complement(743..3361)
                     /gene="alaS"
                     /locus_tag="U1404_001143"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000661542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM5348104.1"
                     /translation="MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSG
                     VATLKKYFDGSVIPDNPRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRD
                     EAIEWGFELLTSPEWFAFPKDKLYMTYYPDDMDSYNRWIALGVEPSHLIPLEDNFWEI
                     GAGPSGPDTEIFFDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRS
                     EYKELPNKNIDTGAGLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMS
                     FKVIADHIRALSFAIGDGTLPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETV
                     GNIMESYYPEVLEKRAFIEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGR
                     DIFKLYDTYGFQVELTEELAEHRGMTLDIAGFEAAMKEQQDRARASVVKGGSMGMQNE
                     TLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQALLVFDQTPFYAEMGGQVA
                     DHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVEKN
                     HTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW
                     NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTIGDYSVELCGGTHVGNTAEIGI
                     FKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESLA
                     QQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWK
                     QKDYSDVLVLVAAIGDKVNVLVASKSSDVHAGNLIKVLAPIVAGRGGGKPDMAMAGGS
                     DSSAIQTLLNSVAENL"
     gene            complement(3641..4126)
                     /locus_tag="U1404_001144"
     CDS             complement(3641..4126)
                     /locus_tag="U1404_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LURP-one-related family protein"
                     /protein_id="HEM5348105.1"
                     /translation="MKQFQVKQRFTFGGEKFDIRDSFGNLAYQVEGSFLEIPKRFIVT
                     NSRGGEVCQITKKFLTFLPQFTIDMVEGHSFYLQKEFTFFKDRYTVENLGLILDGNIW
                     DLDFRLKRPDGMLVAEISKELFHLTSHYSVTVLEDSYADLVISLVVAIDYIEMMEDAS
                     N"
     gene            complement(4392..5393)
                     /gene="prsA"
                     /locus_tag="U1404_001145"
     CDS             complement(4392..5393)
                     /gene="prsA"
                     /locus_tag="U1404_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PrsA"
                     /protein_id="HEM5348106.1"
                     /translation="MKQTKKILAGAVTLFAAVTLAACSNAADKDIITMKGNTITVSEF
                     YEKVKTNSQAQQVLLSMVISNVFENQYGDKVSAEEVNKEYDKKAEQLGASFNAALSSA
                     GLTEESYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEVTARVIKLADEAKA
                     KEVLAAAQAEGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPAEVQKAVFALDAGQ
                     VGASVISSVDMKTYTTSYYVVKLDAKSEKSAKWEDYKDKLKEIILAQKQRDSSFVATV
                     LKEALQKANVKVKDSAFQNLLSQYVTTEESSSSSTKSSSSSTESSSSTTESSSSSGQ"
     gene            complement(5454..6173)
                     /locus_tag="U1404_001146"
     CDS             complement(5454..6173)
                     /locus_tag="U1404_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEM5348107.1"
                     /translation="MVESYSKNANHNMRRPVVKEEIVDFMRTRQAQNTGFLKELEEFA
                     HQENIPVIPHETVAYFRLLMQTLQPKRILEVGTAIGFSALLMADNSPHSKITTIDRNE
                     EMIGFAKENFAKYDYRQQIELLEGEAMDILPTLPDNTYDFIFMDSAKSKYIVFLPEVL
                     KKVKVGGLIILDDIFQGGDVAKDIKDIRRGQRTIYKGLQRLFDATLDNPDVTASLVSM
                     SDGLLMLRKNVENVDLKHIEI"
     gene            complement(6248..6796)
                     /locus_tag="U1404_001147"
     CDS             complement(6248..6796)
                     /locus_tag="U1404_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348108.1"
                     /translation="MLTEEQLQDIFELADLMSNGDRELFLQLREVVFASDPHEILNFM
                     ERILDSESFDDFLDRVGESEKENLWLILIKLLEHLNYICVRDYKDNLEDFIYFFDCLQ
                     QVRNAGISLKLDSGGLSPIASISEWARVIDNKYLDENFCLGAVDMDTDSYYLFFSKQA
                     TFIRLQELAGNLGYRIDYAKNM"
     gene            complement(6812..7252)
                     /locus_tag="U1404_001148"
     CDS             complement(6812..7252)
                     /locus_tag="U1404_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348109.1"
                     /translation="MISYKRSIVIPSVISLVFILLGLGGLTRPEPSMGSVVYLIFLQA
                     LLVYLYILRKQKAVFILTKQYLEFQEHFWSERQRHSLEEIAEIRYIVSPVYRGYQSKR
                     LRIVGNKGGLLAVVSLNRLDGADFNDIYHFVEQVAPHIRWDFSN"
     gene            complement(7254..9056)
                     /gene="pepF"
                     /locus_tag="U1404_001149"
     CDS             complement(7254..9056)
                     /gene="pepF"
                     /locus_tag="U1404_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM5348110.1"
                     /translation="MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFA
                     GHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKNDQDTREGKYQEFQAKAMGLYAAF
                     SQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
                     SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAM
                     YGTYEQFQHTYAKTLQSNVKVNNLKARLRKYDSARHASLAANFIPESVYDTLVAAVNK
                     HLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALKKCQETLEIFGEDYS
                     AIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSL
                     HSMLTRKTQPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFR
                     GTVFRQTQFAEFEQAIYKADQEGQVLTADFLNELYGQTNEKYYGLSAEENPEIQFEWA
                     RIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSLNVIAKA
                     GVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL"
     gene            complement(9288..10229)
                     /locus_tag="U1404_001150"
     CDS             complement(9288..10229)
                     /locus_tag="U1404_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HEM5348111.1"
                     /translation="MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSH
                     FAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQVELEKCLPSIGQVADLFVNNSL
                     ALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
                     HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTF
                     PLDRDLPRYIAQQLYYRSPNWLTLQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQ
                     IQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM"
     gene            complement(10293..12350)
                     /gene="metG"
                     /locus_tag="U1404_001151"
     CDS             complement(10293..12350)
                     /gene="metG"
                     /locus_tag="U1404_001151"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019313364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEM5348112.1"
                     /translation="MGCYQEQGFICPELKGKSMTKTPFYITTPIYYPSGKLHIGSAYT
                     TIACDVLARYKRLMGHEVFYLTGLDEHGQKIEEKAKEAGLTPQAYVDGMAVGVKELWN
                     LLDISYDKFIRTTDDYHEEVVAAVFEKLLAQDDIYLGEYSGWYSVSDEEFFTESQLEE
                     VFRDENGKVTGGIAPSGHEVAWVSEESYFLRLSKYQDKLVEFFNAHPDFIQPDGRMNE
                     IMKNFIEPGLEDLAVSRTSFTWGVPVPSNPKHVVYVWIDALLNYATALGYGQEETINY
                     DKFWNGTVYHMVGKDILRFHSIYWPIMLMMLDMKLPDLLVAHGWFVMKDGKMSKSKGN
                     VVYPEMLVERFGLDPLRYYLMRSLPVGSDGTFTPEDYVGRINYELANDLGNLLNRTVA
                     MINKYFSGQVPTFVANVTDFDADLAAVVADNLASYHKYMEAVDYPRALEAVWNIISRT
                     NKYIDETAPWVLAKDEADRDKLAAVMAHLTAGLRVVAHLIQPFMMTTSNAIMEQLGLG
                     TAFDLENLDFAGLPAGLTVVAKGTPIFPRLDMEEEIAYIQAQMGGSSAISQEEEKEWN
                     PADVELKNEKAAIKFEDFDKVEIRVAEVKEVAKVEGSDKLLKFRLDAGDGEDRQILSG
                     IAKFYPNEQELVGKKVQIVANLKPRKMMGLLSQGMILSAEHGDNLILLTVDPSVPNGS
                     QIG"
     gene            12450..13043
                     /locus_tag="U1404_001152"
     CDS             12450..13043
                     /locus_tag="U1404_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM5348113.1"
                     /translation="MFTKKNILTHLFFLIIAVGLKRYGVTAPDLTWNMFLALVALDFA
                     ILTNHTKSHILKVIAGLLWLFFYPNTFYMVTDIVHMHFANTVLWQRESMILFMLYVPS
                     IFFGVMAGVESVRLIFSAFSIKSYWLKLFMISGLSLLSSFAIHIGRYARLNSWDIFTR
                     PTVVIDEMLAVISWDALPFILGFTFIQIMVLVFSINE"
BASE COUNT         3725 a         2967 c         2548 g         3921 t
ORIGIN      
        1 aggttgtttc atttggtgac tccttatctg ttcatcgtat cagatgaacc ttttcgattt
       61 tcatctcaat atcattgtaa cacttctttt tctttttgac aactatcttt gtcaaaaaaa
      121 taataatttt tgtcaaaaag tttatgaatg ttgtcaaatt gactagaatg ccatacaaaa
      181 aactccttta tccagaggat aaaagagttc atttattatt ccaagtgatc tgtaccagct
      241 tgcattcttt cttcacccca ccagtaaggc atgagttcgc ctaatgtgat ggtttctcgt
      301 ttgtcaaaat caaccatgat ttctgtctgt gcattctcag ccgacagttg catcaaaaat
      361 tcacggcaag ctccacaagg cattcctgaa ccctctccag agggagcttg atttcgaaag
      421 gcaataatgc gttttatcgt cgtctgccca ctatcctgaa acatattaaa ggcagcggct
      481 ctctctgcac aaagatgaaa tacacctgct gttgcctcaa agcaataacc ggtgtaaatt
      541 tgtccatctt ctgcctcaat tgcagcaaca acatggtttg aataaatgaa aggcgaaaca
      601 taatgtggcg cataatgacc ttttgctttc tcatacatct cttgccaaat atctttgatg
      661 tgttccatac gtactcctca ttttagaata gaaagatatc cccttgctag ttgctttaac
      721 aaagggatat acactgacta tattacaagt tttcagctac actattcaag agggtttgga
      781 tagcagagga atcgctacca ccggccatgg ccatgtccgg cttaccacca ccacgacctg
      841 ctacgattgg cgcaaggact ttgatgaggt tacctgcatg aacatcgctt gacttgcttg
      901 ctacaaggac attgaccttg tcgccgatgg ccgcaaccaa caccaagaca tcagagtagt
      961 ctttttgctt ccagttgtca gcgaaggtac ggagggcacc tgcgtctgaa acttggactt
     1021 ggctagcaat gtagcgaatg ccgttagcat ctttgacatc tttgaagaca tcaccagcag
     1081 cggctgccgc tgctttttct ttcagagctg cattttcttt ttgcaggtca cgaacttgct
     1141 gagcaagact ttcaaccttg tttggcactt ccttgatctg cggcgacttg atggttgccg
     1201 ctacttcttt gagggcatct tcttggtcac gataggcaag gaaggcttca cggcctgtta
     1261 ccgcaatgat acggcgagta cctgaaccga taccttcttc tttcaaaatc ttgaagatac
     1321 cgatttcagc ggtgttgcca acgtgggtac caccacagag ttccacagag tagtcaccga
     1381 tagtaacaac gcggacttct ttaccgtatt tttcaccgaa gagggccatg gcacccattt
     1441 ccttggctgt gtcaatatct gtctcaactg tcacaactgg gatagcattc caaatttgct
     1501 cattgacttc ttcttcaata cgacgaagtt cttccgcagt aactgcctca aagtgcgtaa
     1561 agtcaaagcg gaggaaatct tgctcgttca aggaaccagc ctgtgttgca tgctcaccga
     1621 taatattgtg aagagctgca tggagcaagt gagttgctgt gtggttcttc tcaacaccct
     1681 tacggcgttt tgtttcgatt tcaagtgtgt aggtttgacc aactgaaata cttgcggaca
     1741 gttcaactgt gtgcaatggc tgaccattcg gtgctttctg cacatcgatg acagtcgcaa
     1801 caatgtctcc agtagcattt ttcacaaaac catggtctgc aacctgacca cccatttctg
     1861 catagaatgg tgtttggtca aagacaagga gggcttgacc ttctgagact gcttctgtac
     1921 gcgcattatc agccacaatg acagataagc ttgcttcaag agctgtttgc ccataaacaa
     1981 aggtcgactc ttctgtgata gcagccaggg tttcattttg catccccatt gaaccacctt
     2041 tgacaactga agcacgggca cggtcttgtt gctctttcat agccgcttca aaaccagcaa
     2101 tgtcaagggt cataccacgg tgctcagcca attcttctgt caattctact tggaaaccat
     2161 aggtatcata gagtttgaaa atgtcacgac catcaatctc agacttacct tctgctgcca
     2221 atttatccat caattgctca gcaaattgtg aacctgtatg gatagtacga gcaaatgact
     2281 cttcttcact cttaacaatc ttctcaatga aggcacgttt ttcaagtact tctggatagt
     2341 aactttccat gatattacca actgtctcca ccaatttgta caagaatggc tctgtaatgc
     2401 ccaaacgttg accatgcata gaagcacgac gaaggagacg acgaaggaca taaccacgac
     2461 cttcatttcc aggaagggta ccgtcaccaa tagcaaaaga aagggcacgg atgtggtctg
     2521 caataacctt gaagctcatg ttgtcgccat cttggtcata ggtcttacca gaaatctttt
     2581 ctacttcacg aatgattggc aagaagagat ccgtttcaaa gttggtctta gccccttgga
     2641 aaatagctgc taaacgctcc aaacctgcgc ccgtatcgat gtttttgttt ggcaattcct
     2701 tgtactcaga gcgaggaaca gctgggtctg cgttgaactg ggacaatacg atattccaaa
     2761 tctcaatgta acggtcattt tcaatatctt cttccaagag acggatacca atgttttcag
     2821 ggtcaaagtc agtaccacgg tcaaagaaaa tctccgtatc tggaccagaa ggacctgcac
     2881 cgatttccca gaagttatct tcaagcggaa tcaagtggct tggctcaaca ccaagggcaa
     2941 tccaacgatt gtatgaatcc atatcatcag gatagtaagt catgtagagc ttgtcttttg
     3001 gaaaagcaaa ccattctggg cttgtcaaga gctcaaagcc ccattcaatc gcttcatcac
     3061 ggaaataatc accaatagag aagttaccaa gcatttcaaa catggtgtgg tggcgggctg
     3121 tcttaccaac gttctcgatg tcgttggtac ggattgattt ttgggcattt gtaatccgtg
     3181 ggttatctgg aatgacagag ccatcaaagt atttcttgag ggttgccaca ccagagttga
     3241 tccacaaaag agtgggatcg tttacaggga caagatttgc tgaaggctca acagagtgac
     3301 cctttgattt ccagaaatcc aaccacattt gacgaatttg agcagaagat aaatttttca
     3361 taaactaaga taccaagccc gattagaagg cgactgaaaa ataggaaact gacaggaaat
     3421 cttgatttcc taggcagttt atcttttttc cgagccttcc gagcgggttc aatttaacga
     3481 aacagttaaa ttaaacattt cctttcatat agtaataatt gaggggaaag tccgtagccc
     3541 gagtccattt cagaataaac tcgataccct ttcctttcat aagtgatagt taggcgggtt
     3601 caatttaacg gaacagttaa actgaatgat tatttcacga ttaattcgat gcatcttcca
     3661 tcatttcgat gtagtcaatt gcgaccacca aggaaatgac caaatctgca taggagtcct
     3721 ccaatacagt aacggaataa tgagaagtta aatgaaagag ttctttggag atttcagcta
     3781 cgagcatacc atctggcctt ttcaagcgaa aatccaaatc ccagatattt ccgtctagga
     3841 ttaaacctag attttccaca gtataacgat ccttgaaaaa agtaaattcc ttttgcaagt
     3901 agaaagaatg tccctctacc atatcaatgg taaactgggg caggaaggtc aaaaacttct
     3961 tagtaatctg acaaacttcc ccacctctgg aattggttac gataaatcgt tttggaattt
     4021 cgagaaaaga tccctccact tgataagcaa gattcccaaa actatcacga atatcaaatt
     4081 tttcaccacc aaaggtaaag cgctgtttca cttgaaattg cttcatgata acctccaaaa
     4141 aaataacaag aaatcaaacg aagggcgaaa aaaccgcggt accaccttca ttcaatgact
     4201 tgtcattctc atttaagaaa ctgtatccac aagcaaaaaa cttttatata taagccacaa
     4261 actgtgaata caggctctac tattcaattg taatattaag tagcaaaata cttggcttag
     4321 atggctcgca acaaccgcca attttctgaa ctaaggtgtc aagtaccaat tcttaataag
     4381 taaatcgtca attactgacc tgatgaacta gaagattctg ttgtagaaga agaactttca
     4441 gtcgacgaag agctgctctt cgttgaggaa gaactgcttt cttctgttgt cacatactgt
     4501 gaaagaagat tttggaaagc actgtcttta accttaacgt ttgctttttg gagtgcttct
     4561 ttcagcacag tagcaacaaa tgatgaatct ctttgctttt gtgccaaaat aatttctttc
     4621 agcttatctt tataatcttc ccatttagca gatttttctg atttagcatc caattttaca
     4681 acgtaataac tcgttgtata cgtcttcata tctaccgaag aaatcaccga cgctccgact
     4741 tgacctgcat ccaaggcaaa taccgctttc tgtacctctg ctggaacagt tgttgaagtt
     4801 gaatcgaatt taacttcgcc tccattgtct tttgtagtag tatccgtgga attgtctttc
     4861 gccaattgag caaaatctgc accttcagct tgtgcagcag ctaaaacttc ttttgcttta
     4921 gcttcgtctg ccaacttgat gacacgtgct gttacttcag gtgtataggc gtcataagct
     4981 gccttgtagt tttcatctgt caattctttc tcagcagctt gttttacagc atactcaacc
     5041 aatttattgg tacgaatttg ttccttatag gattcttctg tcaatcctgc cgaagaaagt
     5101 gccgcgttaa aagaagcacc aagttgttct gccttcttat catattcctt atttacttct
     5161 tctgcagaga ctttgtcacc atactgattt tcaaatacat tactgataac cattgacagc
     5221 aaaacttgtt gagcttgtga gtttgttttt actttctcat aaaactcaga cacagtaatc
     5281 gtgttacctt tcatcgtaat gatatcttta tcagctgcat tggaacaagc agcgagtgtt
     5341 actgcagcaa agagtgttac tgcacctgcg agaatttttt tagtttgttt cattaaagac
     5401 tctctccttt tttcattaac ccctttatta taacacaaaa gcttaaaaac ttcttaaatt
     5461 tctatatgtt ttaagtcaac attctctaca tttttcctca acataaggag accgtcactc
     5521 atggaaacaa gactagcagt cacatctgga ttatccaaag tcgcatcgaa taaacgttgc
     5581 aatcccttat aaatcgttcg ctgccctctt ctgatatcct tgatgtcctt ggcaacatct
     5641 cctccttgga agatgtcatc caaaatgatt aaaccaccta ctttgacctt tttcaagact
     5701 tctggtaaaa atacaatata ttttgattta gcagaatcca tgaaaataaa atcatatgtg
     5761 ttatctggta aagtaggaag aatatccata gcttctcctt ccagcaattc aatctgctgg
     5821 cgataatcat acttggcaaa gttttcctta gcaaatccaa tcatttcttc atttcgatca
     5881 atcgtcgtaa tcttcgagtg cgggctattg tcagccatca gtaacgcaga gaagccaata
     5941 gcagttccaa cttctaaaat acgtttaggt tggagtgtct gcatcagcaa gcggaaataa
     6001 gctaccgttt catgagggat aactggaatg ttttcttgat gagcaaactc ttccagttct
     6061 ttcaaaaacc ctgtattttg cgcctgacgt gttcgcataa aatccacaat ttcttccttg
     6121 acaaccggac ggcgcatatt gtgatttgcg tttttactat atgattcaac catagaatcc
     6181 attatatcat aagccgacaa gattttcttc ctcaacacac taaaaggtag gtttccccac
     6241 cttttcttta catatttttg gcgtaatcaa ttcgataccc taaatttcca gctagttctt
     6301 gaagtcgaat aaaagtcgcc tgcttactga aaaagagata gtaactatcc gtgtccatat
     6361 ctactgcccc tagacaaaag ttttcatcaa gatatttgtt atcaatgact cttgcccatt
     6421 ctgaaataga tgcaattgga cttaatccac ctgaatccaa tttaagagaa attcccgcat
     6481 tgcggacctg ctgaaggcaa tcaaaaaagt agataaaatc ttcaagattg tccttataat
     6541 cacgcacaca aatatagttc aaatgctcta gtaattttat caagattaac caaagatttt
     6601 ccttttcaga ctctccaaca cgatccaaga aatcatcgaa tgactctgaa tctaaaatac
     6661 gttccataaa attgagaatc tcgtgtggat cactggcgaa gactacttct ctaagttgga
     6721 gaaatagttc cctatcacca tttgacatta aatctgctaa ttcaaaaata tcttgtagtt
     6781 gttcttctgt taacatagtc ccctctcttt attaatttga aaaatcccat cttatatgcg
     6841 gtgctacttg ctctacaaaa tggtaaatat cattaaaatc tgcaccatca agcctattca
     6901 agctgacgac tgcaagtagt ccccccttat ttcctacaat tcgcaaacgt ttcgactgat
     6961 agccacgata gacaggagaa acgatgtatc gaatctctgc aatctcttct aacgaatggc
     7021 gttgacgttc actccaaaag tgttcttgaa attctaggta ctgttttgtc aagataaaaa
     7081 ctgccttttg ctttctcaat atatataaat aaactagcaa agcttgtaaa aatatcaaat
     7141 agacaacact tcccatagat ggctcaggtc tagtcaaacc accaagaccg agcaagatga
     7201 aaacaagact aatcacactg ggaatcacaa tcgaacgttt ataggaaatc atattagagg
     7261 tgcacacctt tctcaacgag agcttctaat tcttccaaac gagcctcaaa aaccttaaag
     7321 gcgtcgttga ggtaatcttc cttggtcatg tctacacctg ctttagcaat gacattgagg
     7381 gaataatctg agctaccagc cttcaagtag ttgagatagt tttctttgtc ttctggactg
     7441 ccgttgacaa tcttgtttgc aagagctgat gcagccgcaa aacctgtcgc atattgatag
     7501 acatagaaat tgtaatagaa gtgtggaata cgagcccact caaactggat ttctggattt
     7561 tcttcggcag aaagtccgta gtatttctcg tttgtctgac cgtacaattc gttgaggaaa
     7621 tcagccgtca agacttgacc ttcctggtct gccttgtaga tagcttgttc aaactcggca
     7681 aattgtgtct ggcggaagac tgtgccacgg aaaccatcta ggtaatggtt aagaatagca
     7741 aagcgttcct tgtcatcttc tacttctgcc aagagttttt ctgttaggag attttcattg
     7801 gttgttgaag caatttctgc caagaagagg gaataatgac catagacata gggttgagtc
     7861 ttacgagtca acatggaatg aagagaatgc cctgtttcat ggataagggt gtacatgtta
     7921 tccaaattat cctgccagtt gagaagcatg aaggcgttgg tgtcgtaggc acctcctgaa
     7981 tatgctcctg agcgttttcc ttcattaaca tggacatcaa tccagcgatt ttcgaaggct
     8041 tccttcacaa tagccgaata atcctcacca aagatttcta aggtttcttg gcatttcttg
     8101 agtgcatctt cataagaaat cttggtgctg aaatctgaca atggtgtgta catatcgtac
     8161 atcttcaagt catcaatacc taggagtttc ttacgcaaat tgatataacg gtgcaagagc
     8221 ggaaggtgct tgttgactgc cgccactaat gtatcgtaaa cagattctgg aatgaaatta
     8281 gctgcaagtg atgcgtggcg agctgagtca tacttccgta aacgagcttt caggttattg
     8341 actttgacat tagactgaag ggtcttagcg tatgtatgct ggaactgctc gtaggtaccg
     8401 tacatagctt cgtatgcttc ttggcggaca tcacggtttt tagactccat aaagtggatg
     8461 tagtttccgt gtgaaagtgg caccaagtga ccgtcttcat ctgcgatttc tgggaaacgc
     8521 aggctagcat tgtccaagac tgagaaggtt tcagcaggtg attcaaaaat ctcgctggtt
     8581 gccgcaagga cttcttccac ctcttgtgac aggacatggt ccttggctgc cagaagtttt
     8641 tcaaattggt ggctgtactg aacaagagta ggctcttctg ccttaaaggc ctccagctgc
     8701 tcttcagtaa tggccataaa ttcaggctca tagaaggcaa aagcctgtga aaaggcagca
     8761 tacaagccca tggccttagc ttgaaattcc tgatattttc cttcgcgagt atcttggtcg
     8821 ttcttcatag acgcatagac atagagtttt tcaatgcgac gcataagact aagttgcgtt
     8881 tcgctaattt ctaagagact tttagctgag tccagtaaat gacctgcaaa ttcttttgtt
     8941 ttttcagttt cagcttgtaa atccgcaagt tctgcttccc aggcatcatc ggttgggaaa
     9001 atagtagtca aatcccactg gtatttttct tcaatttcgt aacgttgttt agacataatt
     9061 aatcctccgt attctttatt ctaacataaa aaatcccctc tttccaacgg aaagtgagga
     9121 cttataggtt actatttcaa ctggaaaata gtttttttgg tattcgctat cgcaagtcgt
     9181 cactaggcta acaaagtcta caaccttcac cgacagtagt atgactaaca taaaatattg
     9241 agcatatttt caaaagtaat atatacacct ccatcagcta tctctattta cattggtttt
     9301 ctataaatta taggtggata tagaacctgt ttctgcttgt cttcaatatt gccgtaatac
     9361 tggtcaaaat cctgataaac taaggttaaa tctttttgta tttgggcaaa gccaatggca
     9421 gagcggggta gacggatatg tgggtaccat tcttctgccg tctttgtcag caaattctcc
     9481 cctcggctat aagactctgc ctgcagggtt aaccaattgg gggatctgta ataaagctgt
     9541 tgagcaatgt agcgaggcaa atccctatct aacgggaaag taagatgcga taaagcttgc
     9601 ttggcaaaag gcagacgcaa gatgtccaat aaatttccct cgccaaatgg aaaaaccttt
     9661 gtcagacagt ggaccttacc tcgtaagtct tcgtgaataa ggtaacgaag acgcaattct
     9721 tttttctcgt catccaattc ccagaggtga aaacccatgt tcatactaaa agagagaaat
     9781 tgcttgtgta atttacttaa tctttctttt atccataggc cttttcccaa cagccagaga
     9841 acctgaagac cagcttcatg ataggcttgc gtcctcagct gcaaacgaga aatgggcaga
     9901 ctggaacatt ggacttccaa agctagacta ttattaacaa ataaatcagc gacctgccct
     9961 atactaggca ggcatttttc aagttcaact tgttcggcat tgattaacca actgtacaga
    10021 caagacttaa gtgacagatg ctgggctgac tcattctcgg aaaaatagtg gcagtcccgc
    10081 agggttacat gggcaaaatg cgaacgcaga acttttccgg atttgtatcg gaccagccct
    10141 ccacaacctg gacaagaata gcgaccttgc ggcgcaggat tttccaagac attaaaaact
    10201 tgtccatctt catcaagtgc aactaacata aaacctcctc tctttattag ttcgcaaaaa
    10261 aacacccagc tatgctgagt gtttgaattt tcttacccaa tctgactgcc atttggcaca
    10321 gatggatcga ctgttaagag tattaaattg tcaccatgtt cggctgagag gatcatgccc
    10381 tgactgagca agcccatcat cttacgtggc ttgaggttgg caacgatttg gactttcttg
    10441 ccgaccaact cctgctcgtt cggatagaac ttggcgatac cagacaggat ttggcggtct
    10501 tcgccatcac ctgcgtccag gcggaatttg agcagcttgt cagaaccctc cactttggct
    10561 acttccttga cttcggccac acggatttct accttgtcga agtcctcgaa cttgatcgca
    10621 gctttttcgt ttttgagttc cacgtcagct gggttccact ctttttcttc ctcttgggaa
    10681 atagcagagc tgccacccat ttgagcttgg atataggcga tttcctcttc catatccaga
    10741 cgtgggaaga taggcgttcc ttttgcgacc actgtcaaac ctgctggaag acctgcaaag
    10801 tcaagatttt caaggtcaaa tgctgttccc aaaccaagtt gttccataat agcattagac
    10861 gtcgtcatca taaatggttg aatcaaatgt gccaccacac gaagacctgc tgtcaagtga
    10921 gccatcaccg ctgccaactt gtcacggtcc gcttcgtcct tagccaagac ccaaggtgca
    10981 gtttcatcaa tgtacttgtt ggtacgggag atgatattcc aaacagcttc cagagcgcgt
    11041 ggatagtcaa cagcttccat atacttgtgg tagcttgcca agttgtcagc tactactgcc
    11101 gccaagtccg catcaaaatc agtcacgtta gcaacaaagg ttggtacctg accgctgaaa
    11161 tacttattaa tcatagcaac cgttcggttg agcaagtttc caaggtcatt ggctagttcg
    11221 tagttgatac ggccaacgta gtcttctggc gtgaaggttc cgtcagagcc aactggcaga
    11281 ctacgcatga ggtaatagcg gagcggatcc aaaccaaaac gctcgaccag catttctgga
    11341 tagaccacat tgcccttaga cttggacatc ttgccatctt tcatgacaaa ccagccatga
    11401 gcaaccaaga ggtctggcaa cttcatatcc aacatcatga gcatgattgg ccagtaaatg
    11461 gagtggaaac gaagaatgtc cttgccaacc atgtggtaaa ctgttccatt ccagaacttg
    11521 tcgtaattaa ttgtttcttc ctgaccataa cccaaggcag ttgcgtagtt gagcagggca
    11581 tcaatccaga catagacaac gtgtttagga ttggacggaa caggcacgcc ccaagtaaat
    11641 gaggtacggg acactgccaa atcttccaag cctggctcga tgaagttttt catgatttca
    11701 ttcatacgac catctggctg gataaagtct gggtgagcat tgaagaactc gaccaactta
    11761 tcctgatact tgctgaggcg aaggaagtag gattcttctg aaacccaggc aacctcgtgg
    11821 ccgctcggag cgataccgcc tgttaccttg ccgttttcat ctcggaagac ctcttctaat
    11881 tggctctcgg tgaagaattc ctcgtccgat acggagtacc aaccagaata ctctcccaag
    11941 taaatgtcgt cctgcgccag caatttttca aaaacagccg ccaccacttc ctcgtggtaa
    12001 tcgtcggttg tgcggatgaa cttgtcgtac gagatgtcga gcaagttcca gagctcttta
    12061 acgccaaccg ccatgccgtc aacgtaggct tgaggtgtca aaccagcttc ttttgccttc
    12121 tcctcaatct tctgcccatg ctcatcaagc cctgtcagat agaagacctc gtggcccatg
    12181 agacgcttgt agcgagccaa gacatcacag gcaatggtcg tgtaggctga accgatgtga
    12241 agttttccag acggataata aatcggtgtg gtgatataaa acggtgtttt tgtcatactt
    12301 tttcctttca actcagggca aatgaaaccc tgttcttgat aacaccccat tttatcatat
    12361 tttcagctaa atcacaaaat ggttctaact acaattcttc ctctatctat gctatactat
    12421 gatacaactc aaacagaaag aggtcatcta tgtttacaaa gaaaaatatt cttactcatc
    12481 tctttttcct catcatagca gtcggactaa aacggtacgg tgtcacagca cctgacttga
    12541 catggaatat gttcttggca ttggtagcac ttgattttgc aatccttacc aatcatacaa
    12601 agtcccatat cctcaaagtg atagcaggtc tcctctggct ctttttctac cccaatactt
    12661 tttacatggt gacagacatc gtccatatgc actttgccaa cacagtacta tggcaacgag
    12721 aaagcatgat tctatttatg ctttatgttc caagtatttt ctttggggtc atggctggcg
    12781 ttgaaagtgt acgacttatt ttctctgctt tttctatcaa atcctactgg ctaaaactgt
    12841 ttatgattag tggtctttcc ctactatcca gctttgccat tcatatcgga cgatatgcaa
    12901 gactgaattc atgggacatc tttaccagac caactgtcgt tattgatgaa atgcttgcag
    12961 ttatttcgtg ggatgctctc ccctttatcc tcggcttcac ctttatccaa attatggttc
    13021 ttgtcttttc aataaatgaa taagattttt atctcatagc cattatcttc aagcatcttc
    13081 ctgcactcaa ggactatcgt tccttttggg aagatttttc aaggacataa acaaaatttt
    13141 ttgataaatt tatatcttct c
//
LOCUS       DASGCC010000059        12481 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.059, whole genome shotgun sequence.
ACCESSION   DASGCC010000059 DASGCC010000000
VERSION     DASGCC010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12481
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.059"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(39..2207)
                     /locus_tag="U1404_001153"
     CDS             complement(39..2207)
                     /locus_tag="U1404_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5348114.1"
                     /translation="MKKFLSFEFWQKFGKCLMVVIAVMPAAGLMVSIGNSIPLISPES
                     ELLIRIGNIIAQIGWGIIGNLHLLFALAIGGSWAKEKAGGAFSAGLAFILINLITGHF
                     FGVTTDMLADAAATVTTVFGTEIPVSGYFVNILGQPALNMGVFVGIIAGFVGATTYNK
                     YYNYRKLPDVLTFFNGKRFVPFVVIYRSVLVALGLAIFWPVVQTGINSFGKWIASSQD
                     TAPILAPFVYGTLERLLLPFGLHHMLTIPMNYTSLGGTYDILTGAQAGAQVFGQDPLW
                     LAWITDLINLKDAGDMAQYNDLLANITPARFKVGQMIGSSGILMGLTYAMYRNVDEDK
                     KHKYKGMFISSALAVFLTGVTEPIEFMFMFAAMPLYVVYAFVQGAAFAMADVVNLRMH
                     SFGNIEFLTRTPMAIKAGIGMDVINFIWVTALFAVGMYFIANFMIKKFNLATAGRNGN
                     YDTETTDVVSNSNVDTADANSQVVQIINLLGGRDNIADVDACMTRLRVSVKDVAQVGD
                     ENAWKQAGAMGLIIKDSGVQAVYGPKADVLKSDIQDLLESGVAIPRTEIVATEEVAPE
                     TQFKGVTETVYSVAEGQAIAITEVKDPVFSQKMMGDGYAVEPSSGNVYAPVSGIVTSV
                     FPTKHAVGILSDKGVEVLVHVGLDTVALNGAPFSAKVTDGQRVEAGDLLLVADLDAIR
                     SAGRETTIVVAFTNTAEIKSVSLGNLGQVSQDSQVATVEL"
     gene            complement(2241..3032)
                     /locus_tag="U1404_001154"
     CDS             complement(2241..3032)
                     /locus_tag="U1404_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEM5348115.1"
                     /translation="MKLLTINVHAWLEERQDEKLDVLAKTIAEKAYDVIALQEVNQLI
                     TADLVTKDLKADNYGLILLEKLRALGQFDYSYYWSNSHIGYDKYEEGIAFLTKLPVYE
                     VDPFYCSQNKSVDSILSRKIMGLTVFYQDQLIDLYSCHINLPGSEEEDQLDNVRTIVE
                     RTGNRRFKILMGDFNTDAFSDREAYEAITELGLYDSYNLAMEKDQGITVEKAIDGWAG
                     HSQEKRLDYIFLNQKKEVLSSLVIFNGENRPIISDHFGVEVEINV"
     gene            3231..3938
                     /locus_tag="U1404_001155"
     CDS             3231..3938
                     /locus_tag="U1404_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HEM5348116.1"
                     /translation="MSKYKKVYQDIKKKIEEQVWSTGQALPTENELMEVYSYSKDTIR
                     KALSLLEMDGYIQKKQGKSSIVIEHGLMKDQYLSEIKTAGELNKRSQHQIQTQLTSLY
                     IIQGQEDLMSTFEVDDKVDFYRVSRVRTIDGERLEYDISYFDRRVVPYLSKEIAESSI
                     YRYLEEELHLTISHSRREISFRFANEEEKQLMDLGDYDMVVVVTSITYLSNGQAFQYG
                     TISYRPDKVSFVSMAKR"
     gene            complement(4165..6429)
                     /gene="glgP"
                     /locus_tag="U1404_001156"
     CDS             complement(4165..6429)
                     /gene="glgP"
                     /locus_tag="U1404_001156"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM5348117.1"
                     /translation="MTKFTTFAETNTSKKLADLTNEEIYLQLLNYVKDAAASKPKNTG
                     KRKVYYISAEFLIGKLLSNNLINLGVYKDVQAELAAAGKSLAQVEDVEPEPSLGNGGL
                     GRLASCFVDSMSTLAINGEGVGLNYHCGLFRQVFKKNEQEAEPNFWIENDSWLIPTTI
                     SYDVPFKNFTLKSKLDRLDILGYKKETKNYLNLFDIESVNYDLITDGISFDKTDIKEN
                     LTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLLIDEAVERGSNLHDLADYAYVQINDT
                     HPSMVIPELIRLLTEKHGIEFAEAVAIVKNMTGYTNHTILAEALEKWPLEFLEEVVPH
                     LVDIIKELDALIRAEIKDPAVQIIDESGRVHMAHMDIHFSNSVNGVAALHTEILKNSE
                     LKAFYELYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLLAFA
                     DDKEVHAKLAEIKFNNKLALKRYLKDNKGIELDENSIIDTQIKRFHEYKRQQMNALYV
                     IHKYLEIKNGNLPKRKITVIFGGKAAPAYIIAQDIIHLILCLSELINNDPEVSKYLNV
                     HLVENYNVTVAEKLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIA
                     ELAGMDNIYTFGKDSDTIIDLYDKAGYVSADYYNGDANIKRAVDFIVSDEVKALGNEE
                     RLGRLHHELISKDWFMTLIDLAEYIEVKEQVFADYEDQDSWNKKVVHNIAKAGFFSSD
                     RTIEQYNQDIWHSN"
     gene            complement(6422..7930)
                     /gene="malQ"
                     /locus_tag="U1404_001157"
     CDS             complement(6422..7930)
                     /gene="malQ"
                     /locus_tag="U1404_001157"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019312918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM5348118.1"
                     /translation="MTNRTSGILMHITSLPGKFGIGTFGQSAYDFVDFLVETKQTYWQ
                     ILPLTTTSYGDSPYQSFSAIAGNTHLIDFDLLVEDGLLATEDFQDVNFGDNPEKVDYA
                     LIYQVRRPILEKAVQAFLQDDKKKAAFLEFEKANSSWLTDYAEFMAIKEYFGNKALQE
                     WEDKKVVARNEEALDKYRLELANQIDYYKVTQYFFFSQWKQLKEYANKHHIKIIGDMP
                     IYVSADSVEVWTKPQLFKLDSERKPLYVAGVPADNFSADGQLWGNPIYDWPEHEKTGY
                     NWWIYRIHESFKLYDVLRIDHFKGFSDFWQVDGKAEVAKVGTWEPGPGYNLFKAVKET
                     LGDLPIIAEDLGNIDAKARKLLADCGYPGMKILEFGFFDVTGKSIDAPHRCIPNSVAY
                     TGTHDNEVVNGWYNNLEPEQQEYVDAYSNRKPIEKVSQAMLRMLFATVSDTAIATMQD
                     VLDLGEESRMNMPSTIGGNWEWRMKAEDLTQERKDFLTKMTLLYQRGNENHD"
     gene            complement(8112..10211)
                     /locus_tag="U1404_001158"
     CDS             complement(8112..10211)
                     /locus_tag="U1404_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5348119.1"
                     /translation="MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEF
                     AMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRNLTQDAREGKLDPVIGRNKEIQE
                     TAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
                     GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPAL
                     SRGELTVIGATTQDEYRNTIHKNAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHH
                     NIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQHPVTDIQTLEAEMAE
                     AKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIP
                     VSQMGASDIERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVG
                     PTGVGKTELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYDDNSHTL
                     TERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNA
                     GFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNN
                     TLAKKGIQLTVTEAAKGFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYL
                     EADVVDGSIQIKEQSFA"
     gene            complement(10626..11036)
                     /locus_tag="U1404_001159"
     CDS             complement(10626..11036)
                     /locus_tag="U1404_001159"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM5348120.1"
                     /translation="MIQPIMKDIFFLQQKSEPATQLDVQVGQDLQDTLSANAHACVGM
                     AANMIGIKKRIIIVNMGFTNLVMYNPVLISKAKPYQTEEGCLSLEGTRPTTRYQEIEV
                     EFLDASWKKISLKLTDFQAQIVQHELDHLEGIII"
     gene            complement(11056..12435)
                     /locus_tag="U1404_001160"
     CDS             complement(11056..12435)
                     /locus_tag="U1404_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348121.1"
                     /translation="MKEKICKKLKELAKKPVRRIDWSGERWFVRRYKQGLALAWIVYF
                     LLREELVKEILKPVSNYLMNFSCIQWFYVNKLTVLLVFTALLFLAKSIFSILRWCEVI
                     RYFPLGKKKYPEYDFPFQEELVSFLNRKEERGRNIFWLDGSWGSGKTHFIRTFFENQL
                     YKPREIYYISCFGIRTREQAEKALIEEIEQHSTFGSLDHIPVVSSLVKWSYKILGLDL
                     MKKYSLIIFDDLERVAYSEKQKDKPEDFNDLLGFIDHLANHRNQKVLVLMNKEDMGNT
                     YQKIVEEKFKPVVTNIPSQKDIIKNMTEEYDDMSREFIRNIYLFQHEFGFINLRAIPF
                     MYSVFESVRQNGVYSVEWFVTTLNNQMREYMTSIMREVRGEVGEEVIYIDEYLNDNAY
                     WKGYLDELNKEDYLNMENKLDIYGEILKQLDKEFNSEKNLIIIKYRDSVYEFAIDNDT
                     LRLIESTYS"
BASE COUNT         3580 a         2710 c         2345 g         3846 t
ORIGIN      
        1 agttgactac aatcatcttt tcaatctttt tttacttttt acaactcaac tgtcgcaact
       61 tgactatctt gactaacctg tccaagattt ccaaggctga cagatttgat ttcagcagta
      121 tttgtgaagg caacaacgat ggttgtttca cgtcctgctg agcgaatggc atccagatct
      181 gcgacaagga gcaagtctcc tgcttcaacg cgttgcccat ctgttacctt agctgagaat
      241 ggggcaccgt ttagtgcaac cgtatctagg ccgacgtgca ccaagacttc tacacccttg
      301 tcagacaaaa tcccgacagc gtgtttggtt gggaagacac tggttacgat acctgaaact
      361 ggtgcgtaaa cattgccgga gctaggctca actgcataac cgtcgcccat cattttttgt
      421 gagaagaccg gatctttcac ttctgtgatg gcaatggctt gcccttcagc aacagagtaa
      481 actgtctccg tcacaccttt gaactgagtc tcaggagcaa cttcttctgt cgcaacaatt
      541 tccgtacgag ggatggctac gcctgattct agtaagtctt gaatgtctga tttgagaaca
      601 tctgcttttg gtccgtagac tgcttgaaca cctgagtctt tgataatcaa gcccatagca
      661 ccagcctgtt tccaagcatt ttcatctcca acctgtgcca catctttaac actaacgcga
      721 agacgagtca tacaagcatc cacatctgcg atattatcac gaccaccaag caagttgatg
      781 atttgaacca cttgtgaatt ggcatccgca gtatctacgt ttgagtttga aaccacatcc
      841 gttgtttctg tatcatagtt accattgcgt ccagctgttg ctaggttgaa tttcttaatc
      901 ataaagttgg caatgaagta cataccaacc gcaaagaggg ctgttaccca gataaagtta
      961 ataacatcca taccgatacc agctttgatc gccatcggtg tacgtgtaag gaattcgata
     1021 ttaccaaatg agtgcatacg caagttgaca acgtcagcca tggcaaaagc cgcaccctgt
     1081 acaaaagcat aaacgacata gagtggcatt gctgcaaaca tgaacataaa ctcaattggt
     1141 tctgttacac ctgtcaagaa tacggcaagt gctgaagaaa taaacatacc tttgtactta
     1201 tgttttttat cttcatccac attgcggtac atagcgtaag tcaatcccat caaaatccct
     1261 gatgaaccaa tcatttgacc aactttgaaa cgggctggag taatgtttgc aagaaggtca
     1321 ttgtactgag ccatatcacc agcgtctttg aggttgatca agtctgtaat ccaagccaac
     1381 cagagcggat cttgtccaaa tacttgtgca cctgcttgtg cacctgtcaa gatgtcatag
     1441 gtaccaccaa gtgatgtata gttcattgga atggtcaaca tgtggtgcaa accaaatgga
     1501 agaagcaaac gttccaaggt accataaaca aaaggtgcaa gaattggtgc tgtatcctgt
     1561 gagcttgcaa tccacttacc aaagctgttg attcctgttt gaacaactgg ccaaaagata
     1621 gctaatccta gcgctacaag aactgagcga tagataacca caaatggtac gaagcgttta
     1681 ccgttaaaga aggtcaaaac atcaggtaat ttgcggtaat tgtagtattt gttataggtt
     1741 gttgccccta caaaaccagc gatgatacca acgaagacac ccatgttcag agcaggctga
     1801 cccaagatgt tgacgaagta gcctgaaacc ggaatctctg ttccaaaaac agtggttacg
     1861 gttgccgctg catctgcaag catgtcagtc gtcactccaa agaagtgacc tgtaatcaag
     1921 ttaataagga tgaaggcaag acctgctgag aaggcaccac cagccttttc cttagcccag
     1981 ctaccaccga tagccaaggc aaagagcaag tgaaggtttc cgataatccc ccaaccgatt
     2041 tgggcgataa tattcccgat acgaatcaag agttctgatt ctgggctgat taacggaata
     2101 gagtttccga tagaaaccat cagacctgct gcaggcataa ctgcaatcac gaccattaaa
     2161 cacttaccga atttttgcca aaattcgaaa ctaagaaatt ttttcatttt ttctccttta
     2221 ttttttggct ctgtgccatt ttatacatta atttcaactt ccacaccaaa atggtctgaa
     2281 ataatcggac gattctctcc attgaaaatc actaagctgg ataaaacttc ctttttctga
     2341 tttaagaaaa tgtaatccaa tcgtttttcc tgactgtgac cagcccagcc atcgatagcc
     2401 ttttcaaccg taatcccctg gtctttttcc atcgctagat tgtatgaatc ataaagcccg
     2461 agctctgtaa tcgcttcgta ggcctcgcga tctgagaagg catcggtatt aaaatctccc
     2521 atgagaatct taaaacgtct attgccagtc cgttccacaa tcgtacgaac gttatcaagc
     2581 tggtcttcct cttcactccc tggaagattg atgtgacaag aatacaggtc gatcaactgg
     2641 tcttgataga agaccgtcaa gcccataatt tttcgtgata ggatggaatc aacagattta
     2701 ttctgactac aataaaatgg atccacttca taaactggca acttggtaag aaaggcaatc
     2761 ccttcttcgt acttatcgta gccgatatgt gagttgctcc aataatatga ataatcaaat
     2821 tgtcccaagg ctcttaattt ttctaataaa atcaagccat aattatccgc cttcaagtct
     2881 ttcgttacca aatcagcagt tatgagctga ttgacctctt gaagagcgat gacatcataa
     2941 gccttttcag ctattgtttt ggctaaaaca tctagttttt catcctgcct ttcttctaac
     3001 caggcatgga cattaattgt tagtaatttc attgctcccc ctctctctga aaatgcgtaa
     3061 ccgttttctt ttatagaaat agtataacgt aaacgtttgc attagtcaat agcttttccg
     3121 taatatttca aacttttacg taaaagttgt gtattctact aaataaaata gatgtattgc
     3181 ccctttctgg ctcttttatg atacactaat gggtagaaag acaggaaact atgagtaagt
     3241 ataaaaaagt ttatcaagat attaagaaaa aaatcgaaga gcaggtttgg tcaactggac
     3301 aggccctacc gacagaaaat gaattaatgg aagtgtattc ctactccaag gacaccattc
     3361 gcaaagcact atctcttctt gaaatggatg gttatattca aaagaaacag gggaaatctt
     3421 ctattgttat cgaacatggt ctaatgaagg accaatatct ttctgaaatt aaaacagcgg
     3481 gcgaattgaa taaaagatca cagcaccaaa ttcagaccca gcttacttcg ctttatatta
     3541 ttcaaggcca agaagattta atgtcaactt tcgaagttga tgataaggta gatttctatc
     3601 gagtgagtcg ggtacggaca attgacggtg agcggttgga atatgacatt tcctatttcg
     3661 accgtagggt cgttccatat ctcagtaaag aaattgccga aagctctatt taccgctact
     3721 tagaagaaga actccattta acaatttctc attccagacg tgaaatctcc ttccgttttg
     3781 caaacgaaga agaaaaacaa ttgatggact taggagacta tgacatggtc gtcgtggtca
     3841 ctagtatcac ctatctttca aatggtcaag ctttccagta tggaacaatt agttaccgtc
     3901 cagacaaagt tagctttgta tcaatggcga aacggtaaaa ggaaactttc gatttttttg
     3961 accaagtgta caaaacttct agaattttat agttataaaa agaatgtctc cgcttttgca
     4021 gagacattct ttgcatttat atactaagga gagcaccaat aatggtaaaa actggcagtt
     4081 tttattcttc aacacatagg aagaattgat ctgataagtt ttggagtggt tcaatcaact
     4141 ttcctactaa ttgttggaat tcaattagtt actgtgccag atgtcttgat tgtactgttc
     4201 aatggtacgg tcagatgaga agaatccagc tttggcaatg ttatgaacaa ctttcttgtt
     4261 ccatgaatct tgatcttcgt aatctgcaaa gacttgttct tttacttcaa tgtattcagc
     4321 caagtcaatc aaggtcatga accagtcttt cgaaatcaat tcatggtgca gacgaccaag
     4381 acgttcttcg ttaccaagtg cttttacctc atcgctaacg ataaagtcaa ctgcacgttt
     4441 gatattggca tcgccattgt agtagtccgc agatacatat ccagccttat cgtacaagtc
     4501 gatgatggta tctgaatctt taccaaatgt atagatgttg tccataccag ccaactcagc
     4561 aatctcaacg ttggcaccat ccatggtacc aagtgtcaac gcaccgttga gcatgaattt
     4621 catgttacca gtacctgacg cttctttaga agccaatgag atttgttctg aaatatctgt
     4681 tgcagggatg agtttctcag caactgttac gttatagttt tccaccaaat gaacgttgag
     4741 gtacttgctc acttctgggt cattgttaat caactctgac aagcaaagaa tcaagtgaat
     4801 gatgtcttgt gcaatgatgt aggcaggtgc cgctttacca ccgaagataa cagtgatttt
     4861 acgtttcgga aggttaccat tcttgatttc aaggtattta tggataacat acaaggcatt
     4921 catttgttgg cgtttgtact cgtggaaacg tttgatttgt gtatcgatga tagagttttc
     4981 atccagctcg atacctttat tgtctttaag gtaacgtttg agagccaact tattgttgaa
     5041 cttgatttct gccaacttag catgcacttc cttgtcatca gcaaaggcaa gcaatttttc
     5101 aagtttagtc gcatctgtca agtattcatc gccaatcaat tctttgatgt agtcagcgag
     5161 gtcttggttg gcaaattcca accaacggcg gaaagtgata ccgtttgttt tattgttgaa
     5221 tttttctggg taaagctcgt agaaagcttt caattcagag tttttgagga tttctgtgtg
     5281 aagcgcagct acaccgttca ctgagttaga gaagtggata tccatgtgag ccatgtgtac
     5341 acgacctgat tcatcaatga tttggactgc tgggtcttta atttctgcac gaataagggc
     5401 atccaattct ttgatgatat caaccaagtg tggcaccact tcttcaagga actcaagtgg
     5461 ccatttttca agtgcttccg ccaagatagt gtggtttgtg taaccagtca tattcttaac
     5521 gatggcaact gcttccgcaa attcaatacc atgcttttca gtcaaaagac ggatcaactc
     5581 aggaatcacc attgatgggt gagtatcgtt gatttgcaca taagcgtagt cagccaagtc
     5641 atgcaagttt gaaccgcgct caactgcttc atcaatcaaa agttgagcag catttgatac
     5701 catgaaatat tgttggtaga tacggagcaa ttcaccattc ttatcagaat catctgggta
     5761 caagaagaga gtcaagtttt ctttaatatc agtcttgtca aatgaaatac cgtctgtaat
     5821 caagtcatag tttactgact caatatcaaa caaattgagg tagttcttag tctctttttt
     5881 atagccaaga atatcaagac gatccaattt tgatttcaaa gtgaagtttt tgaatggaac
     5941 atcatagctg atagttgttg gaatcaacca agaatcattt tcaatccaga agtttggctc
     6001 tgcttcttgc tcatttttct taaatacttg gcggaaaaga ccacagtggt agttcagacc
     6061 aacaccttca ccgttgatag caagtgttga catagaatca acgaaacatg aagccagacg
     6121 tcccaaacca ccgttaccaa gtgatggttc tggttcaaca tcttcaactt gcgccaatga
     6181 tttaccagct gctgccaatt ctgcttgaac gtctttgtac acgcccaagt taatcaagtt
     6241 gtttgacaag agtttaccga taaggaactc agctgagata tagtaaactt tacgctttcc
     6301 tgtgtttttt ggttttgaag ctgctgcatc ttttacgtag ttcaacagtt gaagatagat
     6361 ttcttcattt gtcaaatcag ctaatttctt cgaagtattt gtttctgcaa atgttgtaaa
     6421 tttagtcatg gttttcattt cctcgttggt atagtaatgt catttttgtc aagaagtctt
     6481 tgcgttcttg ggtcaagtct tcagctttca tgcgccattc ccagtttcca ccgatagttg
     6541 acggcatatt cattcgactt tcttcaccca agtctaggac gtcttgcatg gttgcaatag
     6601 ctgtatcact cactgttgca aacagcatac ggagcatagc ttggctaact ttttcaatcg
     6661 gcttacggtt gctgtaggcg tccacgtatt cttgttgttc tggctcaaga ttgttgtacc
     6721 agccattgac aacctcatta tcgtgagttc cagtgtaggc aactgaattt ggaatgcaac
     6781 ggtgtggagc atcgatactc ttacctgtta catcaaagaa accaaattct aagattttca
     6841 tgcctggata gccacaatcc gcaagcaatt tgcgagcttt agcgtcaatg tttccaaggt
     6901 cttctgcaat gattggaagg tctccaagtg tttctttgac agccttgaag agattgtagc
     6961 caggacctgg ttcccaagta cctacttttg ccacctcagc cttaccatcg acttgccaga
     7021 agtctgagaa acctttgaag tggtcaatcc gaaggacatc ataaagtttg aaactttcat
     7081 ggatacgata aatccaccag ttatagcctg ttttttcatg ttctggccaa tcgtaaatag
     7141 gatttcccca taattgacca tctgccgaga agttatcagc tggtacacca gctacataaa
     7201 gcggcttgcg ttcactgtcc aatttgaata gttggggttt tgtccacact tcaacgctat
     7261 cagcagaaac atagattggc atgtctccga tgattttgat gtggtgtttg ttggcatatt
     7321 ctttcaattg tttccattgg ctgaagaaga aatactgtgt gactttgtag tagtcgattt
     7381 gatttgccaa ttctaagcgg tatttatcaa gagcttcctc gttgcgagct acaacttttt
     7441 tatcttccca ttcttggaga gctttattac caaagtattc cttgatagcc atgaactccg
     7501 cataatctgt caaccaagat gagttagcct tttcaaactc tagaaaagca gctttcttct
     7561 tatcatcttg taaaaatgct tgaactgcct tctccaaaat tggtcggcga acttgataga
     7621 taagagcata gtctactttt tcaggattat ctccaaaatt tacatcttgg aaatcttctg
     7681 ttgccaataa gccatcttca accaagaggt caaagtctat caagtgtgta tttcctgcaa
     7741 tagcagagaa agactggtaa ggagaatctc catagcttgt agttgttagt ggtaaaatct
     7801 gccagtaggt ttgcttggtt tccaccaaga aatctacaaa atcataggca gactgtccaa
     7861 aagtaccaat accaaactta cctggaagtg aggtaatatg catcaaaatt ccactggtac
     7921 gatttgtcat aaaaacgttt tcctttctgt cggttacgaa tatagtttaa cgcaaacgtt
     7981 tgcacttgtc aaggatttta taaaaaaagt tttaatgtac tctagaaagc ctattttata
     8041 gcatttgtta gcgaataaca aaaaagaaaa atcagatatt tctatccgat ttttcaaatt
     8101 cttcactatt tttaagcaaa gctttgctct tttatttgga tgcttccatc aaccacatcc
     8161 gcttccagat atttgacatc aacatgatcc aaatagtaat ctgttacctt gtctcgaatc
     8221 tgattttcaa tcacacgacg cagaggacgg gctcccatgg ccttgtcata gccttcttcc
     8281 atcaagaatc ctttggcggc ttccgttacc gttaattgga tgcctttctt cgccagggta
     8341 ttattgacct gagccaagag taattctaca atggctttga gatcatcttt atccaagtgc
     8401 ttgaattcga taactgcgtt aaaacgatta aggaactccg gacggaagaa tggtgcgata
     8461 cggtccatga tgtcttgatt ttcttcacct tctgccattc cataaccaaa acctgcatta
     8521 gaagtcgcga taataatggt atttttaaag ttaacttggt tgccctgtcc atcagtcaaa
     8581 tgcccgtcat ctagcacttg caagagaagg gtaatcactt gtggatcagc tttttcaatc
     8641 tcatccagaa gaacgattga gtacggattg cggcggacac gctcggtaag agtatgggaa
     8701 ttgtcatcgt agccaatgta gccagctgtg gtaccgatta atttggaaac ggctgtccga
     8761 tcgctgtatt cagacatatc caaacgaata atggcatcct tgttaccaaa caagtctagt
     8821 gctagttgct tagccagctc tgtcttaccc acacctgtcg gaccgacaaa gaggaaggaa
     8881 ccaatcggac ggttgccatc atcaaaacct gcacgattcc gacgaatggc acgagataca
     8941 gcttccaccg catcgtcttg accgataacg ttagctgcca gacgattttt caattccttg
     9001 agtcgttcaa tgtcagaagc tcccatttga gagactggaa ttcctgtcat ccgctcaacc
     9061 gcctgagcca catcattaac agtcgccacc actttctgtt gctccgtatg attatcaatc
     9121 tgtttttgta gcttatcaat acggactttt tcattcaagg ctttttcata atcctctttc
     9181 tcagccgctt ccaactgcaa ctgttttgcc tcagccattt ctgcttccaa ggtctgaata
     9241 tctgtcacag gatgttgtgc agccaagtgt gcagcggtca catcgatcag gtcaatagcc
     9301 ttatcaggca agctacgttg tggaatatat tggacagaat aatcaaccgc agctctcaaa
     9361 acctcatctg gcaattcaat attgtggtgg gcttcataaa gcggcttaat ccctttcaaa
     9421 atctggtagg tgtcttctgc ggacggagca ttaaccttga cttcattgaa acgacgagcc
     9481 agtgcggcgt tcttatgaat ggtattgcgg tattcgtcct gtgtagtggc accgataacc
     9541 gtcaattccc cacgggataa agctggtttg agaatatccg ctaaaccctt ggaacctgag
     9601 tctccgccag tgctaccagc tcccaaaatc tgatgaattt catcaaagaa gagaatgata
     9661 tttccagctt ttttgacttc atccacaaga ttttgcacat tttcctcaaa agctccacgg
     9721 tactgggtcc ctgcctccaa gccagaaatg tcaatggaga tgatttcctt gttcttaatg
     9781 gctgctggca catctccgtt gacaatggct tgagccaatc cttctactac cgcagtttta
     9841 ccaacaccag catcaccgac caaaacagga ttatttttcg tacggcgagc caaaatttcc
     9901 gctgtttctt ggatttcctt gtttcgtcca atgactggat ccaacttacc ttcacgcgca
     9961 tcttgggtca aattgcgccc cagttttgca agaatcccat ctgactttat ctgaccttta
    10021 gcctgtgttt gagccacttc ttcggtctgt ggcaggcgac cagtctgacg gtacatagcg
    10081 aattcctccg gtgtcacttc acgcccattg atagaatagc gacgtcgttc tgtactgtat
    10141 ccacccatgt tccccataag ttgattgaaa atatcgtcca tattgttaaa attattgaaa
    10201 ttgttgttca tagtagttac ctcgtttaag tttcagttat ttttgacttt tactgacctt
    10261 tgtcagaaaa taaaatctaa tagggtataa tcctgtcttt catagcaacc tcctcagaag
    10321 tttgtctttt actgaccaat aggttcaaga gtaagtcaaa ccgttctcgt ttgacctaaa
    10381 ctgacctttt gttcaaagaa tttgtaaggc cctttacctt acgaatctta ttttacatca
    10441 ttggtcagta aaagtcaatg attttgtttg accttttttg actttttata gtcgaatgaa
    10501 ttagctttca gacaaggaac tgaggcgcag gctatactaa agtatggcaa ggcaaaagtg
    10561 acgatgtatc aaagttaatt caaatgacta taaaaaaatc tacctgacgg tagatttggt
    10621 agctactaga taataatccc ttccagatga tctagttcat gctgaacaat ctgggcttgg
    10681 aagtctgtca gctttaggct gatctttttc caagaagcat ccaaaaactc cacttcaatc
    10741 tcctgatagc gtgtggtcgg gcgagtacct tccagcgaca ggcagccctc ttctgtctga
    10801 tagggcttgg ccttgctgat gaggacggga ttgtacatga ctaggttggt aaaacccata
    10861 ttgacgatga taatccgctt tttgatgcca atcatgttgg ctgccatgcc cacgcaggca
    10921 tgagcgttgg ctgacaaagt atcctgcaaa tcctgaccga cctgcacatc tagctgagtc
    10981 gcaggctcag acttctgctg caagaagaaa atatctttca taataggttg aatcatgggg
    11041 tagctccttg ctttgttatg aatatgtact ttctattaat cggagagtat cgttatcaat
    11101 agcgaattca tagacagaat ctctatattt tataataata agatttttct cactattaaa
    11161 ttctttatcc aactgtttaa gaatctcccc ataaatatct aatttatttt ccatattaag
    11221 ataatcctct ttgtttaatt cgtccaaata ccccttccag tatgcattat cgttcaaata
    11281 ttcatcaata taaataactt cttctcctac ttctcctctc acctctctca tgatactagt
    11341 catatattct ctcatttgat tatttagtgt tgtaacaaac cactctactg agtacactcc
    11401 gttttgccga acactttcaa atacactata cataaaagga atggctctta aatttataaa
    11461 accaaattca tgttgaaaga gatagatatt tcttataaat tcccgactca tatcgtcata
    11521 ctcctctgtc atatttttta tgatgtcttt ctgacttgga atatttgtca caaccggctt
    11581 aaatttctct tcaacaatct tttgataagt attccccata tcctccttat tcatcaagac
    11641 aagtactttt tgattacggt ggttggcaag gtggtctatg aaaccaagaa gatcgttaaa
    11701 gtcttcaggt ttatcttttt gcttttcact ataagctaca cgttccaaat catcaaagat
    11761 aataagagaa tattttttca tcaagtctaa gcccaaaatc ttataagacc atttgactaa
    11821 actactaaca acgggaatat ggtctaaact tccaaaggtc gaatgttgct caatctcttc
    11881 aatcaatgcc ttctccgcct gttccctggt ccgaatgcca aaacaggaga tataataaat
    11941 ctcacgcggt ttgtaaagtt gattttcaaa gaatgtgcga ataaagtggg ttttcccact
    12001 cccccacgaa ccatctaacc aaaagatatt cctacctcgt tcttcctttc gattcaagaa
    12061 agaaaccagt tcctcttgaa aagggaagtc atattcaggg tattttttct tacccagtgg
    12121 aaaatagcgg ataacctcgc accatcgcaa gatggaaaag atactcttcg caaggaaaag
    12181 cagagcggta aatactaaca aaacagtcag cttatttaca taaaaccact gtatacagga
    12241 aaaattcatt aaatagttac taacaggttt aagaatttcc ttcaccaact cttctcgcaa
    12301 aagaaaatag acaatccacg ccaaagctaa accttgcttg tatcttcgga caaaccatct
    12361 ctctccgctc caatctattc gtcgtacagg ctttttggcg agttctttta acttcttaca
    12421 aattttttct ttcataactt cctcctcagt ttagtatacc aaaaaaagcc tagttctcac
    12481 c
//
LOCUS       DASGCC010000060        12252 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.060, whole genome shotgun sequence.
ACCESSION   DASGCC010000060 DASGCC010000000
VERSION     DASGCC010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12252
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.060"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            193..894
                     /locus_tag="U1404_001161"
     CDS             193..894
                     /locus_tag="U1404_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM5348122.1"
                     /translation="MGKISKEALKEQIKDGIIISCQALPGEPLYREEGGIMPLLVKAA
                     QEAGAVGIRANSVRDIKEIKEVTTLPIIGIIKRDYPPQEPFITATMREVDELAALDIE
                     VIALDCTKRERYDGLDIVDFINQIKEKYPEQLFMADISTFEEGLTAYEAGIDFIGTTL
                     SGYTSYSRQEEGPDIELVDRLCRAGIDVIAEGKIHYPDQVKIIHDLGVAGIVVGGAIT
                     RPKEIAERFISALHK"
     gene            922..2430
                     /locus_tag="U1404_001162"
     CDS             922..2430
                     /locus_tag="U1404_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5348123.1"
                     /translation="MNFKKFSQLGQAFMLPISILPVAGLLLGIGGALSNSNAVAQFPV
                     LDQAWLQAVFTIMSTAGSAVFANLALIFAIGVAVGLADADKGTAGLSAGVAYLVYTAT
                     ISGFLTLFADKGASIDTGVLGALAIGITVATLHNKYRKIELPAFLGFFGGSRFIPIIS
                     SFAAIAIGSIFYIIWPPIQNLLVDFGKAIAEMGSFGTFLYGFGLRLTGAFGLHHTIYP
                     MFWYTSLGGSEVVAGETIQGAQNIFFAQLADANHTGLFTYGTRFFAGRFATMIFGLPA
                     SCLAMYHAIPKENRKKVGSFYSSSALTSLLTGITEPIEFSFLFVAPWLYVVHAFLDGL
                     SFLVADLLQIRIGNSFSGGLIDYLIFGVFQGNDKTNWIYVIPVGLLWAAVYYLVFKFL
                     VTKFHVLVPGMESSDQASHSEKVLSNGSSLRDNAIAIIDALGGADNIENVTACATRLR
                     VSLRNSGLVDKGVIQSIGATAVLDVKGGIQAIFGGKAILYSQEINQILGLEE"
     gene            complement(2534..3346)
                     /locus_tag="U1404_001163"
     CDS             complement(2534..3346)
                     /locus_tag="U1404_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM5348124.1"
                     /translation="MLQTPKHITAIIESHLDQMTRLEKQIASYFTQLDPSSADLSQEN
                     TIQQLHISPSALTRFAKKCGFSGYREFVFAFQNNQQYLDKHFEKLQRSLTKKVLVDYE
                     EILTATNKLVDEEKLEEIAKLIDSSKRVYFYGIGSSGLVAMEIKSRFMRLGVVCDAIT
                     DENNLIWTTNILDDSCLVIGLSLSGQTEEVMEHLQLAAQKGIPTALLTTKSFPHPTFD
                     QIIPVASVRHLNYGNRISPQIPLLIMLDIIYAYFLAIDKEKKENIFKQTIRE"
     gene            3446..3943
                     /gene="ybeY"
                     /locus_tag="U1404_001164"
     CDS             3446..3943
                     /gene="ybeY"
                     /locus_tag="U1404_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEM5348125.1"
                     /translation="MYIEMIDETGQVSAQMQEQITELLQFAAEKIGKQNKEMAVTFVD
                     NKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVFDEEDLLDNPELAEMMEDFDAYIGEL
                     YISIDKAREQAEDYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
                     GLTRE"
     gene            3924..4325
                     /locus_tag="U1404_001165"
     CDS             3924..4325
                     /locus_tag="U1404_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEM5348126.1"
                     /translation="MDLQENNSKNRWKNRELIASLEFAVTGLLTAFKEERNMKKHLAS
                     AILVVLAGLIFQVSVTEWLFLLLSISLVIAFEIVNSAIENVVDLASDYHFSMLAKNAK
                     DMAAGAVLFVSGFALLTGLIIFVPKIWDFIF"
     gene            4342..5241
                     /gene="era"
                     /locus_tag="U1404_001166"
     CDS             4342..5241
                     /gene="era"
                     /locus_tag="U1404_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEM5348127.1"
                     /translation="MTFKSGFVAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKI
                     MGIYTTEEEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGD
                     DMIMERLKQAKVPVILVVNKIDKVHPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNR
                     LMEILKENLDEGFQYFPADQITDHPERFLVSEMIREKVLHLTREEIPHSVAVVIESMK
                     RDEFTDKVHIRATIMVERDSQKGIIIGKQGAMLKKIGSMARRDIELMLGDKVFLETWV
                     KVKKNWRDKKLDLADFGYNEKEY"
     gene            5929..6756
                     /gene="mutM"
                     /locus_tag="U1404_001167"
     CDS             5929..6756
                     /gene="mutM"
                     /locus_tag="U1404_001167"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEM5348128.1"
                     /translation="MPELPEVETVRRGLNRLVKGKIISKVEVTYAPMIKTGVDAFCQD
                     LIGQEILDVDRRGKYLLIDLTDHVLISHLRMEGKYNFFPDQVPANKHFHAFFTFSDGS
                     TLVYQDVRKFGTMELLGKADVDAYFISRKIGPEPTEEDFDLEEFAKKLAKSRKPIKSH
                     LLDQSLVAGLGNIYVDEVLFKAKVHPAQTSNQLSAEQVADLRQATIEVLQLGIEKGGS
                     TIRTYKNALGMDGTMQDYLQVYGKTGQACPRCQTEIVKIQLGGRGTHFCPKCQVKHG"
     gene            6749..7351
                     /locus_tag="U1404_001168"
     CDS             6749..7351
                     /locus_tag="U1404_001168"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEM5348129.1"
                     /translation="MAKIIGLTGGIASGKSMVTAFLREQGYSVIDADAVVHELQAKGG
                     KLYQVLVKEFGQDILSDDGNLDRAKLGQAVFADSKLRARLSDLQDQIIRQELLDRRDA
                     LKQTEDVIFMDIPLLYEADYSGEVNEVWLVYVDRAQQLERLMKRNGLAVQDAENRMAA
                     QLSLEEKRSQAQVVIDNSGAVEATLVQVARLLEELKDGRR"
     gene            7338..8543
                     /locus_tag="U1404_001169"
     CDS             7338..8543
                     /locus_tag="U1404_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM5348130.1"
                     /translation="MDDGSSYWKQNLKVAWLGNFLTGTSFTLVMPFISVFVEELGVGP
                     GQVEYYAGLAVSVNALAAALMAPIWGSLADRYGRKPMMVRAAFAMIFTMGGMAFVPNV
                     FWLLVLRVLNGVFTGYIPNATALIASQVPKDKTGYALGTLSTGAVAGNLIGPTLGGIL
                     AEMFGVHMVFLLVGLLYAIVVLLTVFYIREDFVPIKKGEEMSVKEVFEQVKDRQMLVG
                     LFVTSMIIIAAAQAVVPILTLYVRHLGQTDNLLFVAGFIISLPGMASLVTSGYLGKIG
                     DHIGNHRLLLIALTYSLLINVFCVFAENPFQLGLLRFMYGFGTGALLPSVNSLLTKLT
                     PKEGISRIFSYNQLFNNLGSVVGPMMGSAVAAHMGYDWVFYLSSGLVLFNLIWSLTNF
                     RNYLKVRDV"
     gene            8543..8692
                     /gene="rpmG"
                     /locus_tag="U1404_001170"
     CDS             8543..8692
                     /gene="rpmG"
                     /locus_tag="U1404_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5348131.1"
                     /translation="MRVKINLQCSECGSKNYLTSKNAKTHPDKIEVLKYCPKERKVTL
                     HLETK"
     gene            8739..8972
                     /gene="secG"
                     /locus_tag="U1404_001171"
     CDS             8739..8972
                     /gene="secG"
                     /locus_tag="U1404_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEM5348132.1"
                     /translation="MYQALLAILLILSVILIVVIFIQPAKNQSSNVFDSSSGALFERT
                     KARGFEAVMQRITAILVFLWMLDALALVIISSK"
     gene            9403..11772
                     /gene="rnr"
                     /locus_tag="U1404_001172"
     CDS             9403..11772
                     /gene="rnr"
                     /locus_tag="U1404_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEM5348133.1"
                     /translation="MKNDIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEG
                     SRQLVFDNAGRITLPAPKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNF
                     AIEGDRVEIAIKKVADRLKGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSK
                     NQKIAQKIYIKKSPLVLTGTEILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLE
                     VLESMDIVSEFPDEVLAEANRVPESPSEQDFAGRLDLRDEIIFTIDGADAKDLDDAVH
                     IKQLKNGNLELGVHIADVSYYVTEGSALDQEAIKRGTSVYVTDRVVPMLPERLSNGIC
                     SLNPNVDRLTQSAIMEIDRKGKVVKHWIGQTVIKTNFRMTYSDVNDMIAGNQEKLDKY
                     KTIVPSVELMVKLHETLETMRYKRGALNFDTAEAKIIVNKDGLPVDIQLRQRGIAERM
                     IESFMLVANECVAEHFAKLDLPFIYRIHEEPKSDKLQKFIDYATSFGLTVYGTASSIS
                     QDALQDLMERVKDEPYADVLNMMLLRSMQQARYSEHNHGHYGLGAEFYTHFTSPIRRY
                     PDLLVHRMVRDYGHNPAEKAEHFEQVIPELAKSSSSLERRAIEAEREVEAMKKAEFMQ
                     EFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHITNLNEYYQFHERTLTLQGEKSGRVF
                     RVGQPIRIKLTRADKMTGEIDFAHVPSELDIVEKALKAKRRTASHSNRDRDDRSGRGR
                     GKHHKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEVAKKNKKKRR"
     gene            11775..12242
                     /gene="smpB"
                     /locus_tag="U1404_001173"
     CDS             11775..12242
                     /gene="smpB"
                     /locus_tag="U1404_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEM5348134.1"
                     /translation="MAKGEGNVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRI
                     NLKDGFAQIKQGEAWLVNVHIAPYDEGNIWNQEPTRTRKLLLRKKQIESLGNEVKGTG
                     MTLVPLKVYIKDGFAKVLIGLAKGKHDYDKRESIKRREQDRDIKRTMKAINSR"
BASE COUNT         3403 a         2294 c         3053 g         3502 t
ORIGIN      
        1 agatggcctt tgttttttaa aactagtttt agaagaggta taaaatgttg aaactagttt
       61 caaaagaaga ctattttctt tcaaaataga aattagattt taaatgagga actgggattg
      121 aaaaaaagtt aatgtgctat ataataatat tgtaagcgct atccagaatc cgggaataga
      181 aaggaaaaat taatgggcaa gatcagtaag gaagctctaa aagaacagat aaaagatgga
      241 attatcattt cctgtcaggc tttgccaggc gaacctctgt atagggaaga aggcggtatt
      301 atgcctttac tagtcaaggc tgcccaagaa gcaggggctg tcggtattcg ggccaatagt
      361 gtacgagata ttaaggagat aaaagaagta actactttac caattatcgg aattatcaag
      421 cgagactatc ctccacaaga gccctttatt acggctacga tgcgagaagt agacgagtta
      481 gcagctctag atattgaagt cattgctctt gattgtacca agcgtgagcg ttatgatgga
      541 ctcgatattg ttgatttcat taatcaaatc aaggaaaaat accccgaaca actttttatg
      601 gcagatattt caacctttga ggaaggatta actgcttatg aagcaggcat cgatttcatt
      661 gggacaacac tttcggggta tacatcctat agtaggcagg aggagggacc agatattgaa
      721 ttggttgacc gcttgtgccg agcaggtatc gatgtgatag cggaaggaaa aatacactat
      781 cctgaccaag taaaaattat tcatgattta ggtgtggcag gaattgttgt aggcggtgca
      841 atcacacgtc caaaggaaat cgcagagcgg tttattagtg ctttacataa ataataaata
      901 ggttatagaa aggaatggag tatgaatttt aagaagtttt ctcagctagg gcaggccttt
      961 atgctgccaa tctcaatttt gcctgttgct ggtctcttac tgggaattgg aggcgcctta
     1021 tcaaatagta atgctgtagc acaattccct gtattggatc aagcgtggtt gcaagctgta
     1081 ttcactatca tgagtacggc aggtagtgcg gtatttgcga atttagcatt gatttttgca
     1141 attggtgttg ctgtaggttt ggcagatgct gataagggga ctgctggcct atctgctggg
     1201 gttgcatact tggtttatac ggctactatt agtggatttt taactctttt tgcagataag
     1261 ggagcaagca ttgatactgg agttttgggc gctttagcga ttggtatcac tgttgcaact
     1321 ttacacaata aatatcgaaa aattgaatta ccagcctttc ttggtttctt cgggggctct
     1381 cgctttattc caattatttc atcatttgca gcaattgcga ttggctccat tttttatata
     1441 atttggccac cgattcagaa tttgttagtt gattttggta aggcaatagc agagatggga
     1501 agttttggaa ctttcttata tggttttgga ttacgtttga caggtgcatt tggcttgcac
     1561 cataccatct atccaatgtt ttggtatact tcattaggcg gaagtgaagt ggtagcaggt
     1621 gagacaatcc aaggtgcgca aaatattttc tttgctcaat tagcagatgc gaatcacaca
     1681 ggcttattta cttatggaac tcgatttttt gctggtcgat ttgcaacgat gatttttggt
     1741 ctaccagcat cttgtttggc tatgtatcac gcaattccta aggaaaatcg taagaaggtt
     1801 ggcagttttt attcaagtag tgcattaact tccctattaa caggaattac cgagccaatc
     1861 gagttttctt tcttgtttgt tgctccatgg ctatatgttg ttcacgcatt tttagatgga
     1921 ctatcattct tagtcgcaga tctcctgcaa attcgtattg ggaactcatt ttctggtggg
     1981 cttattgatt acttgatttt tggtgttttc caaggaaatg acaaaaccaa ttggatttac
     2041 gtgattcctg ttggcttgct ttgggcagca gtttattatc tagttttcaa atttttagta
     2101 accaaatttc acgtgctagt tcctggtatg gaaagtagtg accaagcatc acattctgaa
     2161 aaagttttat caaacggttc tagtcttcgt gataatgcaa ttgctatcat cgatgctctt
     2221 ggtggtgcag ataatattga gaatgtaact gcctgtgcaa ctcgattaag agtatcgctc
     2281 agaaatagtg gtcttgtgga taagggagtt attcagtcta taggtgcaac ggctgttttg
     2341 gatgtaaaag gaggaataca ggctattttc ggaggtaagg ctattctgta tagccaagaa
     2401 atcaatcaaa ttcttgggct tgaagaatag agttatattt aagcgaatta aaagcattca
     2461 aactgtacct atcgggtatt tttgaatgct ttttgtttta ttaagattgt tgtgaaatag
     2521 aaagacggat gaattattct ctaatggttt gcttgaaaat attctctttt ttctccttgt
     2581 caatagctaa aaaataggcg tagataatat ctagcatgat gagcaggggg atttggggtg
     2641 agatacgatt gccgtaatta aggtggcgga cagaggcgac tggaatgatt tggtcaaaag
     2701 tcggatgggg aaaactctta gttgttaaca gggcggtagg aatccccttt tgagcagcca
     2761 gctggagatg ttccatgacc tcttctgtct gaccagacag agaaagaccg ataaccaggc
     2821 aactatcatc cagaatattg gtagtccaga tgagattgtt ttcatcagta attgcatcac
     2881 agactacacc cagtcgcata aagcgggatt tgatttccat tgcaaccaaa ccagaactgc
     2941 cgattccgta aaaatagaca cgcttgctac tgtcaatcag tttggcaatt tcttccaatt
     3001 tttcctcatc taccagttta ttggtagcag ttaggatttc ctcatagtct accaagactt
     3061 tttttgttag gctccgctgt aatttttcaa aatgtttatc caagtattgt tggttattct
     3121 gaaaggcaaa gacaaattct cgataaccgg aaaatccaca ttttttggca aaacgggtaa
     3181 gagcagatgg agaaatgtgg agttgctgta tagtgttttc ttggctaaga tcggcgctag
     3241 atgggtctaa ctgagtaaaa taactggcaa tctgcttttc aagtctagtc atctgatcca
     3301 gatgagactc aatgatggca gtgatgtgtt tcggtgtttg taacattttc cattcctctg
     3361 atagcttctg aggacattat accactaaaa ccccctcatt gataggtttt atgatataat
     3421 ggaaacgtaa aaggaatgta agattatgta tattgaaatg attgatgaaa cagggcaggt
     3481 ttctgctcaa atgcaggagc agattacgga attgctccag tttgctgccg aaaaaattgg
     3541 caagcagaat aaggaaatgg ctgtgacctt tgtggacaat aagcgtgtcc atgaggttaa
     3601 cttggagtat cgaggaattg accgtccgac agatgttgtc agcctagaat ataagccaga
     3661 gtcggagatt gtttttgatg aggaagactt actggacaat cctgaattgg ctgaaatgat
     3721 ggaagatttc gatgcctata ttggtgaatt gtatatttct atcgataagg cgcgtgagca
     3781 agctgaagat tatggtcata gctacgagcg cgaaatgggc tttttagctg tacacggttt
     3841 tctgcatatc aatggctatg atcattatac gccagaagaa gaagcagaaa tgtttggttt
     3901 acaagaagaa attttgacgg cctatggact tacaagagaa taattcaaaa aatcgctgga
     3961 aaaaccgaga gctgattgcc agtctagaat ttgcagtaac gggtttgttg acggctttca
     4021 aggaagaacg caatatgaag aagcaccttg cttctgctat tcttgtggtg cttgcgggac
     4081 ttattttcca agtatctgtg acagagtggc tcttcctctt gctcagtatt agtctggtta
     4141 tcgcttttga aattgtgaat tcggctattg aaaatgtggt ggatttggct tcagactatc
     4201 atttttctat gttggcgaaa aatgccaagg acatggcagc aggggcagtc ttgtttgtgt
     4261 caggatttgc cttgctaaca ggattgatta tctttgtgcc gaaaatttgg gactttattt
     4321 tttagaatat aaggagaata catgacattt aagtcaggtt ttgtggcgat tttaggtcgt
     4381 ccaaacgttg ggaaatcaac ctttctcaac tatgtaatgg ggcaaaaaat tgccatcatg
     4441 agcgacaagg ctcaaacaac ccgtaacaag attatgggca tttatacgac agaagaagaa
     4501 cagattgtct tcattgacac accgggaatt cacaagccta agacagcttt gggcgatttt
     4561 atggtggagt ctgcttatag cacccttcgt gaagtggaca cggtcctctt tatggtgcca
     4621 gccgatgaaa aacgaggcaa gggtgatgac atgattatgg aacggctcaa gcaggccaag
     4681 gttccagtta ttctcgttgt taacaagata gacaaggttc atccagacca gcttttggaa
     4741 cagattgatg atttccgtca acagatggac ttcaaggaaa ttgtgccaat ttctgctacc
     4801 caagggaaca atgtcaaccg acttatggaa attctcaagg aaaacctgga cgaaggcttc
     4861 cagtatttcc cagcggacca aatcactgac cacccagaac gtttcttggt atctgagatg
     4921 attcgggaga aggttctaca cctgactcgt gaggaaattc cgcactctgt ggccgttgtc
     4981 atcgagtcca tgaaacgtga tgaatttacc gacaaggtcc acattcgtgc tacgattatg
     5041 gtagagcgtg atagccagaa aggcatcatc atcggtaagc aaggagccat gctcaagaaa
     5101 atcggctcca tggctcgtcg tgatattgaa ctcatgctag gtgacaaggt cttcctcgaa
     5161 acctgggtca aggtcaagaa aaactggcga gacaaaaaac tcgacctcgc cgactttggt
     5221 tataatgaga aagagtatta aaaacgtccg ggggagtgaa acagtctagg aatagactgt
     5281 ttcagctggt cacctagaaa tgtgaaagtg accatttgaa aacccgagca tagaaattgg
     5341 aaggcgagat agcctgggga taggctgtct aagtcaatca cttagaaata gttagcagaa
     5401 aagccgaaag gcttttactg cgttatggag aaatcttttt agtaaacaag aaaggaaagt
     5461 cgattaggtg ttgtcttgaa cacgcctacg actctttgaa aaaagataac cgtgacctag
     5521 gtgccgaagc accatcggtc aggtttctat ttgctttgta attttgttag aaaggacgag
     5581 tgtttgcgta cttgaacccg agctaaaagc tcggaaaata gatagagctc cttatgtgca
     5641 agtcacatag cgtcgctctc ctaattttac tatatttaga aaggaaagcc gattaggtgt
     5701 tgtaattgaa cacgcctagg cctccttgaa aatcacaacc gtgacctagg tgccgaagca
     5761 ccgtcggtca ggtttctatt tgctttgtaa ttttgttaga aaggacgagt gtttgcgtac
     5821 ttgaacccga gctaaaagct cggaaaatag atagagctcc ttgtgtgcaa gtcacacagc
     5881 gtcgctctcc taattttcag tcgcttttta cgctcttggt atcgtacatt gcccgaattg
     5941 cctgaggttg agacggttcg tcgtggtttg aatcgtttgg tcaagggaaa aattatttcc
     6001 aaggtggagg tgacctatgc tcccatgatt aagacaggtg tggatgcctt ctgtcaggac
     6061 ttgattggtc aggagatttt agatgtggac cgtcgtggca agtatctctt gattgacctg
     6121 acagaccatg tcctcatttc tcatttgcgg atggaaggta agtacaattt ctttcctgac
     6181 caggtgcctg ccaacaaaca tttccatgcc ttttttactt tttcagatgg ctcgaccttg
     6241 gtctatcaag atgtccgcaa gtttggcaca atggaactgc tgggcaaggc agatgtggat
     6301 gcctatttta tcagtcgaaa aattggtcct gagccgacgg aggaagattt tgacttagaa
     6361 gaatttgcca aaaagttagc taagtcgaga aaacccatta agtcgcatct tttggaccag
     6421 tctttggtgg ctggtttggg caatatttat gtcgatgagg tcttgttcaa ggccaaagtt
     6481 catcctgcac aaacgagtaa tcagctatca gcagagcagg tggcagatct ccgccaagct
     6541 accatagaag ttctacaact gggaattgaa aaaggtggtt caaccattcg gacttacaaa
     6601 aatgccttgg gcatggatgg gactatgcag gattatttac aagtttacgg aaagacaggg
     6661 caggcctgtc cccgttgcca gacagagatt gtcaaaatcc agctgggcgg acgggggaca
     6721 catttctgtc ccaagtgtca ggtgaaacat ggctaaaatt atcggtttaa caggcggaat
     6781 cgcctctgga aaatcaatgg tcacagcttt tttgcgagaa cagggctatt cagtcatcga
     6841 tgcggatgcg gttgttcacg aattacaggc caaaggtggc aagctctatc aggttttggt
     6901 gaaagagttt ggtcaagaca tcttatcaga tgatggaaat ttggataggg ctaagctggg
     6961 ccaggctgtt tttgcggata gcaagttgcg ggctcgcctg tctgacctgc aggaccaaat
     7021 tatcaggcag gagctgttag acagaaggga tgccctcaag cagacggagg atgtgatttt
     7081 tatggatatt cctttgctct acgaggcgga ttatagcggg gaagtaaatg aagtctggct
     7141 agtttatgtc gatagagcgc agcagttgga acggcttatg aaacgcaatg gcttagctgt
     7201 tcaagatgca gaaaatcgta tggctgctca gctttcttta gaggaaaaac ggtcgcaagc
     7261 ccaggtggtg attgacaata gcggagcggt tgaggcgacc ttagtgcagg ttgctcggct
     7321 tttggaggaa ttaaaggatg gacgacggta gtagttattg gaagcagaat ttgaaggtgg
     7381 cttggttggg aaatttccta acagggacga gttttacctt ggttatgcct tttatctcgg
     7441 tttttgtgga agagttggga gtgggccctg gacaggtaga atattatgcg gggcttgcgg
     7501 tatctgttaa tgcccttgca gcagccttga tggcgcctat ttgggggagt ttggctgacc
     7561 gctatgggcg caagcctatg atggttcggg cggcttttgc tatgatcttt accatgggtg
     7621 gaatggcttt tgttcccaat gttttctggc ttcttgttct tcgtgtactt aacggtgtct
     7681 ttacgggtta tattccaaat gcgacagctc tgattgccag tcaggttcca aaggataaga
     7741 cggggtatgc tctgggtacc ttatcaacag gtgcggtagc gggtaatttg attggtccga
     7801 ccctaggtgg tatcttagca gagatgtttg gcgtacatat ggtatttttg ctggtgggac
     7861 ttctttatgc tatcgttgtg ttactgaccg ttttctatat tcgagaggat tttgttccaa
     7921 tcaaaaaagg cgaagaaatg tcggttaaag aggtatttga gcaggtgaaa gatcggcaga
     7981 tgctggttgg gctttttgtg acatctatga ttattattgc agctgctcag gccgtcgttc
     8041 ctatattgac cctctatgtg cggcatttgg gacagacaga taatctgtta tttgttgctg
     8101 gttttatcat ttccttgcct ggtatggcat cgctagtgac atcaggttat ttagggaaaa
     8161 ttggtgatca cattggtaat catcgacttc tattaattgc tttgacttac agtctgttga
     8221 ttaatgtttt ctgtgttttt gcagaaaatc ctttccagct tggtttgttg cgattcatgt
     8281 atggttttgg gacaggagca ttgttgcctt cggtcaattc tcttttgacc aagttgaccc
     8341 ccaaagaagg gatttcaagg atattttcct acaaccaact ctttaataat ctaggttctg
     8401 ttgttggtcc catgatgggg tctgcggtag ctgctcacat gggttatgac tgggttttct
     8461 atctgtcgag cggacttgtc ctctttaacc ttatctggtc tttgaccaat tttagaaact
     8521 atttgaaagt aagggatgtt tagtgagagt taaaatcaat ttacaatgtt cagaatgtgg
     8581 tagtaagaac tacttgacta gcaaaaacgc caagactcat ccagataaga ttgaagtcct
     8641 taaatactgc ccaaaagaga gaaaagtaac cctccacctt gaaactaagt aggttttatg
     8701 gtataatgtc ataagttatt gtagaaagtg aaaaaaatat gtatcaagca ttattagcaa
     8761 ttctgttgat tttatctgtt attttgattg tagtgatttt tattcaaccg gctaaaaacc
     8821 agtctagcaa cgtctttgac tcttctagtg gagccttatt tgaacgtaca aaggcccgtg
     8881 gttttgaagc ggtgatgcaa cgcattacag ctattcttgt ttttctttgg atgctggatg
     8941 cgctggcgct tgttatcatt tcaagtaagt agataaatca gactgggact tgttcttggt
     9001 ctattttttt gggagtgggc cagaactcga caagtataaa gagttcgtct gcctaccccg
     9061 cacaagttga ataggtatgg ttcggagcgt tattcgcgaa ctattgagat ttgctttgca
     9121 aatcctatct cccacctcca acaatcattt gattgttgga gcaatcaacc actgcgtctg
     9181 gatataacgc aaaatacagt cttttagttt gcttttagta ctaggcaacg agctgcagac
     9241 tgtactgaag tacgacaaag cgagttcaaa taatgatgaa attatttgaa gttggaaata
     9301 gggaaacgga gtttcctcgt acgtcgcagt aataaaagat aaactaaagg actgaaagag
     9361 aaatagtgct aggtttttat cctgcactct ggtaaataca acatgaaaaa cgatattatt
     9421 aactatatta aagaagttgg tcctgtgacc atggaccagc tggcagatca gtttggagcc
     9481 agttctgcta agagctttac agacttggtc aagctggttt ctagcatgga aggcagtcgt
     9541 caacttgtct ttgacaatgc tgggcggatt actcttcctg ctccaaaaat ctccaagaac
     9601 aaggtgacct tacagggtat tttccgtgcc cacaagtcgg gttttggctt tgtgaccatt
     9661 gacgaggagg aagatgatct ctttgtcagc cgtgacgatg ttaactttgc tatcgaaggt
     9721 gacagagttg aaattgcaat caaaaaggtt gcagatcgtc tcaagggaac tgccgcggaa
     9781 gcggaagtca ttgatatttt ggaacatagc ctgaaaacag cggtgggctt gattgtcttt
     9841 gacgaagata agccagaata tgcaggctac atcaagtcta aaaaccagaa aattgctcag
     9901 aagatttaca tcaagaagtc acctctggta ttgaccggaa cggaaatcct aaaagttgat
     9961 atcgaagctt atccaaacaa gaaacgggac cactttgttg cgaccattcg ggacgtggtg
    10021 ggccacaagg acgatgtggg catcgatgtc ttggaagttt tggagtccat ggatatcgtg
    10081 tcggagtttc cagatgaagt cttggcagag gccaatcggg taccagaaag tccgtctgaa
    10141 caggactttg caggacgttt ggacctgcga gatgaaatta tcttcaccat agacggtgcg
    10201 gatgccaagg acttggacga tgcggtccat atcaagcagc ttaagaacgg caatctggag
    10261 ctaggtgtcc atatcgctga tgtcagctac tatgtgacgg aaggctctgc cttggatcaa
    10321 gaggccatca agcgtggaac gtctgtctat gtgaccgacc gtgtggtgcc aatgttgcca
    10381 gaacgtttgt caaacggcat ctgctctctt aatccaaacg tggaccgtct aacccagtcg
    10441 gctattatgg aaattgaccg caagggcaag gttgtcaagc actggattgg ccaaacggtc
    10501 atcaaaacca acttccgcat gacctattct gatgtcaatg acatgattgc gggaaatcag
    10561 gaaaagctgg acaaatacaa gacaatcgtg ccaagtgttg agctcatggt caaactccat
    10621 gaaaccctgg aaaccatgcg ctacaagcgt ggggctctca actttgatac agctgaagct
    10681 aaaatcatcg tcaacaagga tggtctgcca gtcgatatcc agctacgtca gcgaggcatt
    10741 gctgagcgga tgattgagtc cttcatgctg gttgccaatg agtgcgttgc tgagcatttt
    10801 gccaaactgg acctgccttt catctatcgg atccacgagg agcctaagtc agacaagctg
    10861 caaaagttca tcgactatgc gaccagcttt ggtctgacgg tctatggtac ggccagctct
    10921 atcagccagg acgcccttca ggacctcatg gagcgggtca aggatgaacc ctatgcggat
    10981 gtcctcaaca tgatgttgct gcgttctatg cagcaggcac gctactcgga gcacaaccac
    11041 ggccattacg gtctgggtgc cgagttctac acccacttta ccagccctat ccgtcgttat
    11101 cccgacttgc tggttcaccg catggtgcgg gactatggtc ataatcctgc ggaaaaagca
    11161 gagcattttg agcaggttat acctgagctt gccaagtctt cgtccagttt agaacgccgt
    11221 gccattgagg cagagcggga agtcgaagcc atgaagaagg cagagttcat gcaagaattt
    11281 gttgggcaag agtttgatgg tgtcgtatct agcgtagtca agtttggtct ttttgtagag
    11341 ttaccaaaca cggttgaagg cctgattcat atcaccaacc tcaacgaata ctatcagttc
    11401 cacgagcgaa ctctgacctt gcagggtgag aaatcaggtc gggtcttccg tgtcggtcag
    11461 ccaattcgta tcaagctaac gcgggcggac aagatgacag gggaaatcga ttttgcccac
    11521 gtgccgtccg agctggatat tgtcgaaaaa gctctgaaag ccaaacggag aactgctagt
    11581 cactctaacc gtgaccgtga tgatcggtca gggcgaggac ggggcaagca ccacaaacaa
    11641 gaagctgctg gtcgcgacag cggacgtcac aagtctggaa aagaccacaa gtcaaaaagt
    11701 ggcaaaaaag acaagaaaaa gaaaccattt tacaaagaag tggctaaaaa gaacaagaag
    11761 aaaaggagat aggcatggcc aagggtgagg gcaatgtgat tgcgcaaaat aaaaaagccc
    11821 gccacgacta taccattgtc gatacagtgg aggcggggat ggtcctgacg gggacggaga
    11881 ttaagtctat tcgtgcgggg cggatcaacc ttaaggacgg ctttgcccag atcaagcagg
    11941 gcgaggcttg gttggtcaat gtccatatcg ctccctacga tgagggcaat atctggaatc
    12001 aggagccaac gcggacccgc aagctcctct tgcggaagaa gcagattgag tctctgggca
    12061 atgaggtcaa gggaacaggg atgactctgg tgcccctcaa ggtctatatc aaggatggct
    12121 ttgccaaggt tttgattggg cttgccaaag ggaagcacga ctacgacaag cgggagtcaa
    12181 ttaaacgccg tgagcaagac cgtgatatca aacggaccat gaaggctatc aatagtcgat
    12241 agaggctggg ag
//
LOCUS       DASGCC010000061        12219 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.061, whole genome shotgun sequence.
ACCESSION   DASGCC010000061 DASGCC010000000
VERSION     DASGCC010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12219
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.061"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            83..1081
                     /locus_tag="U1404_001174"
     CDS             83..1081
                     /locus_tag="U1404_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5348135.1"
                     /translation="MKVLLYLEGKTVLEKSGIGRALQHQMEALDMAGIPYTTDLLGDY
                     DVIHINTYGPRSWLLLHAAKRSGKKVIMHGHSTKEDFQNSFIGSNTLAPFVGKYLASM
                     YQKADFVITPSEYSKKLIQSYGVTTPIIAVSNGIDLDKYKKDERKEAIFREHFKIEEG
                     QPVVVCAGLYFRRKGIEDFVKVAEKMPHVRFIWLGSINKWLIPSYIRKIVEGDHPANV
                     EFPGYFKGAVFQGAMSGADAFFFPSYEETEGIVVLEALASHQHVVLRDIPVYDGWVDE
                     NVAELGHTVDDFVDSIQKILDKQVDKREAGYQVAVSRSIDNVSHQLVDAYRQVLEM"
     gene            1082..2395
                     /locus_tag="U1404_001175"
     CDS             1082..2395
                     /locus_tag="U1404_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5348136.1"
                     /translation="MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHTVFIFTTTDED
                     VNRYEDWDIIRIPSVPFFAFKDRRVAYAGFTGALKIASRYKLDIIHTHTEFSLGILGK
                     MIAKELDIPVVHTYHTQYEDYVHYIAKGRIIRPGMVKYLVRAFLKDLDGVICPSEIVE
                     DLLMSYNVPISKRVIPTGIDLAKFDRPEIGKDETDELREQLGIASDETMLLSLSRISH
                     EKNIQAIVQAMPKILLENPKVKLVIVGGGPYTDDLQEMIAELNLDEHVQLTGMIAPSD
                     TALYYKAADFFISASTSETQGLTFLESLASGTPILAHSNPYLKNVVTDKMFGTLFVRE
                     QELADAVVEAIVATPPMNPYVLDKKLYEISSTNFGRKVFEYYLDLKISYDFRKEHTNQ
                     DSVAEALIKEAIYLPQKVVVKSTDTTAKILKKSVEQVKSIRNFFD"
     gene            2410..2784
                     /locus_tag="U1404_001176"
     CDS             2410..2784
                     /locus_tag="U1404_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348137.1"
                     /translation="MEKLRKESWKNLAIVALIILSMYAGIYLIAFHLISDTMLSKELV
                     VGNILLYTPIVLFLTGLLYGFFHGFSPSLLALVLLLYPVTIFFFKEWIILYQIVYTLC
                     AMIGNGVGALLFSLRKKMRKNP"
     gene            3257..3442
                     /locus_tag="U1404_001177"
     CDS             3257..3442
                     /locus_tag="U1404_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like protein"
                     /protein_id="HEM5348138.1"
                     /translation="MNRLIMTKRGRYYDEPPYTLKHKMAENIWWLIELADRLDIDIQK
                     EMETFLTQKEELLGIKK"
     gene            3592..5544
                     /gene="thrS"
                     /locus_tag="U1404_001178"
     CDS             3592..5544
                     /gene="thrS"
                     /locus_tag="U1404_001178"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEM5348139.1"
                     /translation="MLKITFPDGAVRDYQAGVTTFEIAESISKSLAKKALAGKFNGKL
                     IDTTRAIEEDGTLEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIKLGVGPAIQDGF
                     YYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALDIFKNDPYKLELIQ
                     EHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLNVAGAYWRGKSENPMMQRVY
                     GTAWFDKKDLKAYLQMREEAKERDHRKLGKELDLFMISQEVGQGLPFWLPNGATIRRT
                     LERYITDKELASGYQHVYTPPLASVELYKTSGHWDHYHEDMFPTMDMGDGEEFVLRPM
                     NCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFVTP
                     EQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEKYYDNDEMWENAQRMLKGA
                     MDEMGVDYFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLLPERFGLTYIGADG
                     EEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPTQVTMIPISVEAHLDYAWKVA
                     KELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQ
                     TQSVSEFVDHILADIARKSRPAEAAE"
     gene            complement(5616..6275)
                     /locus_tag="U1404_001179"
     CDS             complement(5616..6275)
                     /locus_tag="U1404_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5348140.1"
                     /translation="MNYVLELLKPSTFQLLWSGLKLTLYISSISVILSILFGMILAIM
                     RNGKNPIFKWIATIYIEFVRNVPNLLWIFTVFLVFQMKSTPAGITAFTIFTTAAMAEI
                     IRGGLNAIGPGQTEAGLSQGFTPVQIMVYIIMPQAIRKMLPAIISQIVTVIKDTSFLY
                     SVIALQELFGSSQILMGRYFEAEQVFALYIMVALIYFSINFAISSLSRYVAKSWASSI
                     E"
     gene            complement(6290..6988)
                     /locus_tag="U1404_001180"
     CDS             complement(6290..6988)
                     /locus_tag="U1404_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5348141.1"
                     /translation="MTVLTTSPYAWENWVSYFKDFPTFFQGFLFTLAISVGAFIMAMF
                     LGIVFGSLSSSKNKVLKIIARVYVEYYQNTPLLVQFMIVYYGLPLISNYVLMPSIYWT
                     AVICIGLYHGAYIAEVIRAGIEAVPTGQTEAALSQGFTQSETMRIIILPQAIPTILPP
                     LTNQVVNLIKNTATVAIISGADIMFMTKSWSAMNANYIPAFAGAAFLYFIMCFPVASW
                     GRRIEEKNKSAFSH"
     gene            complement(7003..7842)
                     /locus_tag="U1404_001181"
     CDS             complement(7003..7842)
                     /locus_tag="U1404_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5348142.1"
                     /translation="MDKKKINIFFAIRLLVFGLILFVFAKQPVAQTETPASITNSDQV
                     QAIIDRGVLRVGVKQDVPNFGYKNPDTGEFEGMEIDIARKIADELGVDIEFTPVTAQT
                     RGPLLDNGQVDMVIATFTITEERKLLYNFTTPYYTDAVGFLVNKDSGIKTFTDLDGKT
                     IGVAQGSITRTLISKLADKYGISVNFAELGSYPELSVSLRAHRTDAFSVDQSILSGYI
                     SSKSELMDFSFSASDYGIVTKLSNKDLNNYLNSLVEKWTADGSLQSIYDANGLKPVTE
                     TDE"
     gene            complement(7853..8614)
                     /locus_tag="U1404_001182"
     CDS             complement(7853..8614)
                     /locus_tag="U1404_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5348143.1"
                     /translation="MALVEFKDVNKYYGDYHALRNINLEFEPGQVVVLLGPSGSGKST
                     LIRTINGLEAIDEGTLIVNGHDISSTSIKELVSLRKEVGMVFQHFNLYPHKTVLENVT
                     LAPIKVLGIDKATAEKTAQKYLEFVNLWDRKDSYPAMLSGGQKQRVAIARGLAMKPEL
                     LLFDEPTSALDPETIGDVLAVMQKLARDGMNMIVVTHEMGFAREVADRIIFMAEGEVL
                     VDTTDVNGFFDNPTEPRAQQFLSKIINHESDKVKL"
     gene            8808..9512
                     /locus_tag="U1404_001183"
     CDS             8808..9512
                     /locus_tag="U1404_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005589489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5348144.1"
                     /translation="MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE
                     FPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKP
                     FSNRELQARVKALLRRSELAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELT
                     HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDAPSRPE
                     YILTRRGVGYFIKGND"
     gene            9505..10854
                     /gene="vicK"
                     /locus_tag="U1404_001184"
     CDS             9505..10854
                     /gene="vicK"
                     /locus_tag="U1404_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     VicK"
                     /protein_id="HEM5348145.1"
                     /translation="MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQL
                     NQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSY
                     MSDGVIATDRIGRIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQTPE
                     IVIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSH
                     ELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVG
                     QIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDN
                     ILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSR
                     AQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE"
     gene            10861..11664
                     /locus_tag="U1404_001185"
     CDS             10861..11664
                     /locus_tag="U1404_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM5348146.1"
                     /translation="MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLL
                     AEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMDIYANELTWQAMESKLGKIDVAQ
                     KHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
                     ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIY
                     LGHLSKENNIKELAHMTMVNQLAQADLGVGVDFQVYDTSPDTATPLTKI"
BASE COUNT         3597 a         2270 c         2851 g         3501 t
ORIGIN      
        1 tattggcttt aattgataca aaattcgtgt agaatacagt ttaaaatatg aaaaaaatgt
       61 aaaaaagggc tataatggta ttatgaaagt actattgtat ttagaaggta aaactgtttt
      121 agagaaatca ggaattggcc gggcacttca acaccagatg gaagcgctag atatggcagg
      181 cattccttat acaacagacc tgttgggaga ttacgatgtc attcatatca atacctatgg
      241 tccacgctcc tggttattgc tacatgcagc caaacggagt ggaaaaaagg taatcatgca
      301 tggacattcc acgaaggaag attttcaaaa ttcctttatc ggttcgaata ccctagctcc
      361 ttttgtaggg aaatatctag caagcatgta ccaaaaggca gactttgtca tcactccttc
      421 agagtattca aaaaaactca tccagtctta cggtgtgaca acgccaatta tagccgtttc
      481 gaatggtatt gatttagata aatataagaa ggatgaacgc aaggaagcaa tctttcgaga
      541 gcattttaaa attgaagaag ggcagccggt tgttgtctgt gcaggactct acttccgacg
      601 taaaggaatt gaagactttg tcaaggtagc cgaaaagatg ccgcatgtcc gcttcatttg
      661 gctcggttca atcaataagt ggctgattcc gtcatatatt agaaaaattg ttgagggaga
      721 tcatccagcg aatgtcgagt ttccaggtta ttttaaaggt gctgtttttc aaggtgcaat
      781 gagcggagcg gatgcctttt tcttcccatc gtatgaggaa acagaaggga ttgttgttct
      841 ggaagctctt gctagtcatc agcatgttgt tctaagagat attccagttt acgatggttg
      901 ggttgacgaa aacgttgccg aattgggaca tacagtggat gattttgtcg attctattca
      961 gaaaatctta gacaagcagg ttgataaacg tgaggcgggc taccaggttg cggttagtcg
     1021 ctcgattgac aatgtttccc accaattggt ggatgcctat cgacaagtat tggagatgta
     1081 aatgcggatt ggattgttta cggataccta ttttccacag gtttcaggag tcgcgacttc
     1141 gattcggact cttaagacag agttggagaa attgggacat acggtattta tttttacgac
     1201 gacagatgag gatgtgaatc gctacgaaga ttgggacatt atccgaattc ctagcgtacc
     1261 tttttttgcc tttaaagatc gtcgagtggc ctacgcaggt tttacaggtg ccttaaaaat
     1321 tgcaagtcgc tataaactag atattattca tactcataca gaattttctt tggggatttt
     1381 ggggaaaatg attgccaagg aactagatat tccggtggta catacttatc acacccagta
     1441 tgaagactac gtacactata ttgccaaggg taggattatt cgtcccggga tggttaaata
     1501 tttagtacgg gcatttttaa aagatttgga tggggtaatt tgtcctagtg agattgttga
     1561 agatctttta atgagttaca atgttccgat ttctaaacga gtaattccga caggaattga
     1621 cttggcaaag tttgatagac cagaaattgg caaggatgaa acagatgagt tgcgggaaca
     1681 gctaggaatt gctagtgatg aaacgatgtt gttaagtctg tctaggattt ctcacgagaa
     1741 gaatatccaa gcaatcgttc aggcaatgcc aaaaattttg ctagaaaatc caaaggtgaa
     1801 gttggtcatt gtcggaggtg gaccttatac agatgatctt caggaaatga tagcggagct
     1861 taatctagat gaacacgtcc agttgacggg aatgattgca ccaagtgata cagcacttta
     1921 ttataaagct gcggatttct ttatttctgc ttcgaccagt gaaacacagg gactaacttt
     1981 cttagaaagt ttagcttctg gaactcctat tttggcacat agcaatccct acttaaaaaa
     2041 tgttgtaaca gataagatgt ttgggacact cttcgttcga gaacaggagt tggcagatgc
     2101 cgtcgttgag gcgattgttg ctacaccacc aatgaatccg tatgtgcttg ataagaagct
     2161 ctatgagatt tcttctacga attttgggcg caaggttttt gaatattatc tagatttgaa
     2221 gatttcgtat gattttagaa aagaacatac taatcaagat agcgtagcag aagcattgat
     2281 aaaagaggct atttacctac cgcaaaaagt agtagttaaa tcaacagaca caacagcaaa
     2341 aatattgaaa aaatcagtcg aacaagtaaa atcaatccgg aatttctttg attaatttgg
     2401 aggtttcaaa tggaaaagct tcggaaagag agttggaaga atctggctat agtagccctt
     2461 attatactat ccatgtatgc aggtatttat ctgattgcct ttcatctgat tagtgacacc
     2521 atgctttcta aggaactggt ggtcgggaat atattgctct atactcccat tgtactattc
     2581 ctaacaggtc ttctttatgg attttttcac ggcttttctc ctagccttct tgccttggtt
     2641 ttactgcttt atcctgtaac catctttttc tttaaggaat ggattattct ctatcagatt
     2701 gtctacacct tatgtgctat gattggaaat ggggtaggag ctctgctatt ttctctaaga
     2761 aagaaaatga ggaaaaatcc ttgaaaaatc aggaaatcct gttataatag cttttagaga
     2821 cttatcaatt ctaggaaatc tttgagagag tgtgcggtgg gtgcaagcac atagaggata
     2881 ggattgacac tactcagtat gattttatgc aaacataaaa gggtggttcc cttatcacca
     2941 atctgaggta gtcaggcttt ttagcgtgac tgcgaatgaa ggtggaacca cgttacgacg
     3001 tccttttgtg agggtgtcgt attttctttt ttgacaaaac aaggagatga acatgcctgt
     3061 tcttccaaaa gaaacgcttg aacgctgccg aaccattcgc aaggcttaca gagagttaga
     3121 ggtcaagcac cacgacaaag agtggtccat tgaggagtga aacagtctgg ggatagactg
     3181 tttcagctca acaacttaaa ataaagattt gttgacaaac tcttttctat ttgttgagtt
     3241 ctttctcact cccaacatga accgcctgat tatgaccaag cggggtcgtt actatgatga
     3301 accgccctat accttgaagc ataaaatggc tgaaaatatc tggtggttga tcgaactggc
     3361 tgaccgactg gatattgata ttcaaaaaga aatggaaacc tttttaactc agaaagaaga
     3421 gttattgggg attaaaaaat aaaaatagaa aggactaggg tctccgtatt tggttgaact
     3481 gaatacgggc tacggactgg gccaaaaaga taaacgagaa ctggacgctt gcatcgtcgt
     3541 tctgtttcct attttgtctg tgtccgctta acgcccttta tatcttatat tatgcttaaa
     3601 attactttcc cagatggtgc tgttcgtgac taccaagctg gtgtgactac ttttgaaatt
     3661 gcggagagca tcagcaagtc tttggcgaaa aaggctcttg ctggtaagtt taatggtaaa
     3721 ttgattgaca caactcgtgc cattgaagag gacggtacac ttgaaatcgt aacgcccgat
     3781 catgaggatg ccttggacat cttgcgtcac tcagctgccc acttgtttgc ccaggcggct
     3841 cgtcgtcttt tccctgacat caagttgggg gttggtccag ctattcagga tggtttctac
     3901 tatgatacgg acaatgcggc tggtcagatt tcaaatgaag acctgccccg cattcaggaa
     3961 gaaatgatga agattgtcaa ggaaaacttc ccttctgaac gccgtgaggt gactaaggaa
     4021 gaagcacttg acattttcaa aaatgatcca tacaagttgg aattgattca ggaacattct
     4081 gacgatgagg gtggtttgac catttatacc caaggtgaat acgttgacct ctgccgtggc
     4141 ccacacgttc cgtcaacagg ccgtatccag atttttgaat tgctcaacgt ggctggtgca
     4201 tactggcgtg gtaagagcga aaatccaatg atgcaacgtg tgtatggtac agcttggttt
     4261 gacaaaaaag atctcaaagc atatctgcaa atgcgtgaag aggccaaaga acgtgaccac
     4321 cgtaaacttg gtaaggaatt ggatcttttc atgatcagcc aagaagttgg tcaaggcttg
     4381 ccattctggt tgccaaatgg agcgaccatc cgtcgtacct tggagcgtta catcacagat
     4441 aaagagttgg cttcaggtta ccagcacgtt tatacgccac cattggcttc tgtcgaactc
     4501 tataagacct caggtcactg ggatcattac catgaagata tgtttccaac catggacatg
     4561 ggtgacggtg aggagtttgt gcttcgtccg atgaactgtc cgcaccacat ccaagtttat
     4621 aagaaccatg ttcgttcata ccgtgaattg ccagtacgta tcgctgagct tggtatgatg
     4681 caccgctatg aaaaatctgg tgcattgact ggtttgcaac gggtgcgtga gatgaccctc
     4741 aacgacggtc atatctttgt cacacctgag caaatccaag aagagttcaa aaaagctctc
     4801 cagttgatca tcgatgtgta cgcagatttc aacctaaatg actaccgttt ccgcctgtct
     4861 tatcgtgacc cagaggacaa agagaagtac tatgacaacg atgagatgtg ggaaaatgcc
     4921 caacgcatgt tgaaaggtgc catggatgaa atgggcgtag actactttga ggctgagggt
     4981 gaagctgcct tctacggtcc gaaattggat atccaagtga aaacggccct tggtaacgaa
     5041 gaaaccctgt caaccattca gttggacttc ctcttgccag aacgctttgg tttgacttat
     5101 attggtgctg acggtgagga acaccgccca gttatgattc accgtggtgt tatctcgact
     5161 atggaacgct tcaccgctat cctgattgaa acctacaagg gtgccttccc aacctggttg
     5221 gctccaaccc aagtgactat gattccaatc tctgtggaag ctcacttgga ctacgcttgg
     5281 aaggttgcaa aagaattgca agaccgcggt gtgcgcgtac acgtggatga gcgtaacgag
     5341 aagatgcagt acaagattcg tcagagccag accagcaaga ttccatacca actcatcgtc
     5401 ggtgacaagg aaatggaaga caatgctgtc aacgttcgtc gctacggaag taaggcaaca
     5461 caaactcagt ctgtatcaga atttgtggat catatcctag cagatattgc ccgcaagtca
     5521 cgtccagctg aagcagctga ataaataaag caagaagtcc gaaagggctt cttttttgac
     5581 agcaaaaact cccaaccgat tggctgggag aaatttcatt ctatactgct cgcccaagac
     5641 ttagccacat aacgtgacag gcttgaaata gcaaagttga tactgaagta aatcagggca
     5701 accataatgt agagagcaaa gacttgctcc gcctcaaagt agcgtcccat gaggatttga
     5761 ctcgaaccga agagttcttg caaagcgata acggagtata ggaaactggt atccttgata
     5821 accgtcacaa tctgagagat gatggcgggc agcatcttgc gaatggcctg tggcatgatg
     5881 atatagacca tgatttgcac tggggtaaaa ccctgtgaca aaccagcttc ggtctggccc
     5941 ggtccgatgg cgttgagacc accacggata atctcggcca tggctgccgt ggtaaaaata
     6001 gtaaaagcag taataccagc aggcgttgac ttcatttgga agactaagaa gacggtgaaa
     6061 atccagagca agtttggtac atttcgcaca aactcgatat agatagttgc aatccacttg
     6121 aaaattggat tttttccatt gcgcatgatg gcgagaatca ttccgaaaag aatggacagg
     6181 attaccgaaa tgctagagat ataaagggtt aacttcaaac cactccacaa gagttggaag
     6241 gttgaaggtt tgagtaattc taaaacataa ttcatcgttc aacctccttc tagtgtgaaa
     6301 aagctgactt attcttttct tcaatgcgac gtccccagct tgcaacaggg aagcacatga
     6361 tgaagtaaag gaaagcagca ccagcaaagg ctgggatgta gttggcattc atggcagacc
     6421 aagattttgt cataaacata atatcagctc cagagataat ggcaacagta gccgtattct
     6481 taattaagtt tactacttgg ttggtcaaag gtggaagaat ggtcggaatg gcctgtggta
     6541 aaatgatgat tcgcatggtt tcagactgag taaatccttg tgaaagtgca gcttctgttt
     6601 gaccagttgg cacagcctca atccctgcac gaatgacctc tgcgatataa gcaccgtgat
     6661 agagtccgat gcagataaca gctgtccagt agatggatgg catgagaaca taatttgaaa
     6721 tcagtggaag tccataataa acaatcatga actgaaccaa aagcggcgtg ttctgatagt
     6781 attcaacata gacacgtgcg atgattttta aaactttatt tttacttgaa gagagactac
     6841 caaagacaat tcctaaaaac atggccatga taaaggcacc gacagaaatg gctaaggtaa
     6901 agagaaaacc ttggaaaaag gttggaaaat ccttgaaata actgacccaa ttctcccaag
     6961 cgtaaggact agttgttaaa actgtcatat tgtttcacct ttctattcgt cagtttctgt
     7021 gactggtttg agaccattgg catcatagat gctttgtagg ctaccatcgg cagtccattt
     7081 ttctacgaga ctatttaagt agttgttaag gtctttgtta gataatttag taacaattcc
     7141 atagtcagaa gctgagaagc taaagtccat gagttcagat ttagagctga tatacccaga
     7201 aaggatagat tggtctactg aaaatgcgtc tgtacggtga gcacgtagcg agacagagag
     7261 ttctggataa gaaccaagct ctgcaaaatt gacagagata ccatatttgt ctgctagttt
     7321 agagatgagg gtacgtgtaa tggaaccctg agctacaccg attgtctttc catccaggtc
     7381 ggtaaatgtc ttaattccac tatccttatt gaccaagaag ccaacggcat ctgtgtagta
     7441 aggagttgtg aaattgtaga ggagtttacg ttcctcagtg atagtgaagg ttgcgatgac
     7501 catatccact tgaccgttat ctaagagtgg tcctcgggtt tgcgctgtaa cgggagtaaa
     7561 ttcgatatct acacctaatt catctgcaat tttacgagca atatcaatct ccattccctc
     7621 aaattcacca gtatcagggt tcttgtagcc aaagtttggg acgtcctgtt tcactccgac
     7681 tcggagaacg cctctatcga tgatagcttg aacttgatca ctattggtaa tggatgcggg
     7741 tgtttctgtt tgagctactg gttgttttgc gaaaacgaaa agaataagtc caaagaccaa
     7801 taatctaatt gcaaagaaaa tgttgatttt tttcttatcc atagacttcc tcctagagtt
     7861 ttactttgtc agattcgtgg ttgataatct tgctgaggaa ttgttgggca cgaggctctg
     7921 tcggattgtc aaagaagcca tttacatctg ttgtatcaac taaaacttct ccctcagcca
     7981 tgaagatgat gcgatcagct acttcacggg caaagcccat ttcgtgtgtt acgacaatca
     8041 tgttcatccc gtcacgtgcc aatttttgca taactgcaag tacatcgccg atagtttctg
     8101 ggtccaaagc agatgttggt tcatcgaaga gtagaagctc aggtttcata gctaagccgc
     8161 gagcgatggc gacacgttgt ttttggcctc cggatagcat agcagggtag gaatccttcc
     8221 gatcccagag gttaacaaac tcgaggtatt tttgagcggt tttttcagcc gtagctttat
     8281 cgattcccaa aaccttaata ggtgccaaag taacattttc taacacggtt ttgtgtgggt
     8341 aaaggttgaa atgctggaaa accatgccaa cttctttgcg aagtgatacg agctctttga
     8401 tagaagtaga ggaaatatca tgtccattga cgatgagcgt tccttcatca attgcctcta
     8461 aaccgttaat cgtgcgaatg agagtagatt ttccggatcc ggaaggtcca aggagaacga
     8521 caacctgtcc aggttcgaat tccaagttga tattgcgtag ggcgtggtag tcgccatagt
     8581 atttgttgac atctttaaat tctactaaag ccataaaatt ctccttgcat agtgtttttt
     8641 aggtattccc atcttagcat tgcctatata caatgtcaag taaattctga caatttaatg
     8701 tgttgtatgt tacaaaatat gacatagctg tgtcagatgg ttttgaaata tgaatttttt
     8761 aggtaagtct gatataatag aagaaataaa gcaaaggtaa gatactaatg aaaaaaatat
     8821 taattgtaga tgatgaaaaa ccaatctcag atattattaa gtttaatatg acgcgtgagg
     8881 gatatgaagt tgtgacagct ttcgatggac gtgaagcctt ggaagtattt gaggctgagt
     8941 ttcctgacat tgtcattttg gacttgatgt tgccagaatt ggacggacta gaggttgctc
     9001 gaacgattcg taagaccagc aatgttccaa tcttgatgtt atctgctaaa gatagcgaat
     9061 ttgataaggt tatcgggctt gaaatcgggg cggatgatta tgtgaccaaa cccttctcta
     9121 atcgcgaatt acaggcgcgt gttaaggctc ttcttcgccg tagtgaattg gcagagacgc
     9181 agacaaatat tgagtcaaca ggaactccag agttggtgat tggcgatttg gtcattctgc
     9241 ctgatgcgtt tgttgctaag aagcatggta aagagctgga gctgacccat cgtgagtttg
     9301 aattgctcca ccatctggcc aaacacttag gtcaggttat gactcgagaa catctattgg
     9361 aaacagtttg gggttatgat tactttggtg atgtccgcac ggtggatgta acgattcgtc
     9421 gtctgcgtga gaaaattgaa gatgcaccaa gcagaccaga atacattctt actcgtcgcg
     9481 gagtgggata ttttataaaa ggaaatgatt aatcaattac gttatttaat gaccacggca
     9541 gaattttggt ttgttgtcat tttgattggc tttctaattg ctctgacggt ccttttgatt
     9601 gaaaactatc gggataataa gcaaattaaa caactcaatc aaaaagtcaa tgccttaatt
     9661 gaggggaatt atgcagatgt gttagacatg aggggaagtc ctgaaatcac agatatggcg
     9721 aattctctta atgatctgtc cgaggtcatc cgcttaactc atgataattt agaacaagaa
     9781 aagacgcgtc tgacgtccat cctgtcctat atgagtgacg gtgttattgc tacagaccgt
     9841 atcggacgga tcatcatgat taacgatatg gcccagaaac agttggggct ttctagccaa
     9901 aagcaggagc agtatcacct gctagaggtt ttagatttat cagaccgtta tacattgaga
     9961 gatttgttgg ctcagacacc tgagattgtg attgatcaca ccaatgaaaa cgaagaattt
    10021 ttgactttac gcgctaattt tgccacgatt cgtagtgaga gtggtctgat ttctggcctg
    10081 gttgtcgtct tgcatgatat gaccgagcaa gccaaggaag aacgggaacg taggctgttt
    10141 gtatcaaatg tgagtcatga attgcgtacg ccattgactt ccgtcaaatc ctatctagag
    10201 gctctggatg agggagcgct gacggagtct gttgcaccga gttttgttaa ggtatcctta
    10261 gatgagacca accgcatgat gcggatgatt acagacctcc taagtttatc gcgtattgat
    10321 aatcaagttg gtcagataga tgtcgaactg ataaacttta ctgcttttgt gacctttatt
    10381 cttaaccgtt ttgaccaaat gaaaaatgct gattcagata aggtctatac gattgttcgt
    10441 gactatcaaa tcagtcctat ttgggttgag attgatacag ataagatgac tcaggttttg
    10501 gataatatct taaataatgc cattaaatat tcgccagatg gcgggacaat taccttcagc
    10561 atgaagacca cagatagcca gttgattgta tccgtatcag acgaaggtct ggggattccg
    10621 aaagcagatt tacctagaat ttttgaccga ttttatcgcg tagacaaggc acgatcacgt
    10681 gcccaaggtg gtacaggtct tggtttagct attgcaaaag aaatcgtgaa acaacataag
    10741 ggctttatct gggctaaaag cgaatatggt catggctcaa cgtttacaat tgtcttgccg
    10801 tacagtaagg acatcgcact agatgagtgg gatgattcag atgaggaaga ataggagaat
    10861 atgatcggaa aaggttttaa ttatagtatt ttagcttcgg ggtccagcgg gaattgtttt
    10921 tacctagaaa cagataaaaa gaaaatctta gtggatgctg gcttatcagg gaaaaagatt
    10981 accagtcttt tggcggaaat tgatcgaaag cctgaggata ttgatgctat cctggtaacg
    11041 catgaacata gcgatcacat ccatggtatc ggtgttttag cacgtaagta tgggatggac
    11101 atttatgcca atgaattgac ctggcaggct atggagagca aattgggcaa gattgatgtg
    11161 gctcaaaaac atatctttga attgggtgct atgaagactt ttggcgacct agatattgag
    11221 tcctttggag ttagccatga tgctgcatgt ccgcaatttt accgttttat gaaggatgac
    11281 aaatcctttg ttatgttgac ggatacaggc tatgtcagtg accgcatggt tggaattgta
    11341 gaaaatgccg atgcttattt gattgaatcc aaccatgata ttgaaatttt gcgctcgggt
    11401 tcttactctt ggaacctcaa acaacggatt ttgtcagata agggtcatct ttgtaatgaa
    11461 gatggagctg atgccatgat tcgctcgttg ggaaatcgga ccaaaaagat ttacctaggg
    11521 catttgtcaa aggaaaacaa tatcaaggaa ttggctcaca tgaccatggt taatcagttg
    11581 gcgcaggctg atttaggagt tggagtggat ttccaagtct atgacacatc gccagataca
    11641 gcgactccct tgaccaagat ttgacaattg atacaaacta agttatactg aaattactaa
    11701 ttatacgagg tgaagttaca tgaataatta agctacttat tagtcgttct taaaacttgt
    11761 agtgaggtta tatgaaccga ttatacaagg gataagactg ctcataaggg cttagtattc
    11821 atgtgacttt ttccataggg aaaggtcatg ttttgcatgg cttttttctt gttcattgag
    11881 cagaataggg gccctttttg tgaagaaaag aggtctatat ggaagtaata aaatgtattc
    11941 gattagagaa ggaatttgcg ggatgtagag gctgggcaaa aagcttaacc tcgcttctca
    12001 gggttcgtgt caacatctca gcgcagtggt tgattggcag atttgttcgt gttttacact
    12061 ccaaatctga ccttacgatc gttgcgaaca aagttcgctt tatctccaac ctcaaactgt
    12121 ctcccagaca gtttgagctg tgcgggggtg ggagtgaaac agtctgggga tagactgttt
    12181 cagctcaaca actggaaata aggacttgtt gacgaactc
//
LOCUS       DASGCC010000062        12108 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.062, whole genome shotgun sequence.
ACCESSION   DASGCC010000062 DASGCC010000000
VERSION     DASGCC010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12108
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.062"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(226..3603)
                     /locus_tag="U1404_001186"
     CDS             complement(226..3603)
                     /locus_tag="U1404_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5348147.1"
                     /translation="MGETMKKKIYWKDMRQSLLSSKGRFLSIFSLMMLGALALTGLKV
                     TAPNMEKTAQAYIASHRTMDLAVISGLGLSQADLDELETIEGATLEAGYFKDVVTNEG
                     QTAIRLFSAPQTLSTYKLVEGEMPSQKGQIALSASFKNRYKLDDTVQVTESDKDGKIL
                     TQTSFTLVGFVASAEIWDNETMGMAASGDGQLGGYGLVSQDTFKSEVYTIARIRYDDL
                     VDLPYYSQAYQDRLDQHQEDVEKLLANNDEQRLAAIQSDGQTDISKGEEEIAQAQSQL
                     EQAESELETGEEQLATGRREFARGRAKVVQTEAELRAAQAQLLKNKFELEESKKELDG
                     RKAQLEQTASFLDGYQMELETSAQQLEEAKQELDSQNAQLSQTASQISTGRASWFQAQ
                     QELDLEIANHLQEGQTLSDYPDLLARQEGLDVEKSRLDQMESAHEQANQAYLQGYDYY
                     QTKQNEYNSNLAQYQTWNQEYQAGLARYQAGLSQYEQGIAAYNKGVEDYEWGLSQLES
                     SNQLLRQEEFRLEEADKELSQAQSQFSEKKATADQEISQAQTEIAQAKSDLSKLEKAP
                     YQVYTRSSLPGGDGYTTYSNATRSIAAVGNVFPVVLYLVAALVTFTTMARFVDEERTQ
                     SGLFKALGYTNRQIMAKFILYGLTAGLVGTIVGIIAGNLLLSPLISNIITQTTVIGPA
                     KLHFYPLWTGLALLLSLASSVLPAYLVARRELTEKPAQLLLPKPPVTGSSIWLEKWPA
                     IWSRLSFTHKVTARNIFRYKLRMLMTIFGVAGTVALLFGGLGIRSSISGVVQRQFGEL
                     IHYDMLVVENSRATEEELDKLTHFLQSDQVRQSLPVAFEQLNQTVEEDGQRKNLSISL
                     YISDRRDFGNQVSLESSTGQPIKLSDRGIVLTEKLAQIYGVSVGDKLSLTLEDKEVSV
                     RVEAVADMYAGHFIYMTDSYYEQVTGKQKTANAYLVQLKDSQLGHIQTLASQLLAMPA
                     VRSLVQNTSLIDMLTTIAGSLQTIMTILVILSILLGLVILYNLTIINMSERIRELSTI
                     KVLGFHNKEVTMYIYRETIVLSLIGMLVGLVGGIYLHKLLLAMIGSDSIRFNPSVGLE
                     VYLIPILAISGILAVLGWYVNHHLRKVDMLEALKSVD"
     gene            complement(3603..4304)
                     /locus_tag="U1404_001187"
     CDS             complement(3603..4304)
                     /locus_tag="U1404_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348148.1"
                     /translation="MSYIQVKNSSKYYQMGDATIVANDGVSFEIEQGELVIILGSSGA
                     GKSTLLNILGGMDSNDEGEVWIDGVDIAKLSSHELTNYRRDDVGFVFQFYNLVANLTA
                     KENVELAAEIVKDALDAEEVLEQVGLGHRINNFPAQLSGGEQQRVAIARAVAKKPKIL
                     LCDEPTGALDYQTGKQVLQILQDMSRTQGTTVIIVTHNSSLAPIADRVIRMRDARVHS
                     VELHAEPQDIASLEY"
     gene            complement(4393..4728)
                     /locus_tag="U1404_001188"
     CDS             complement(4393..4728)
                     /locus_tag="U1404_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase BlpT"
                     /protein_id="HEM5348149.1"
                     /translation="MEKTQIIQDVLALIQDLNRAFQADKVGTADEQRFQHNLTETTRI
                     LSEAESVTNTELIAIEKFYRSTSFLVGLGDLRLSETSRQAWRAFDRYYYETIREELKL
                     YGGSAIAQV"
     gene            complement(4823..5308)
                     /gene="tpx"
                     /locus_tag="U1404_001189"
     CDS             complement(4823..5308)
                     /gene="tpx"
                     /locus_tag="U1404_001189"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEM5348150.1"
                     /translation="MTTFIGKPVTLVGPQLRVGDVAPDFVLMANDLSLKSLKDFGKQT
                     KVISVVPSIDTGICDTQTRRFNQELADRDNTVVITVSADLPFAQKRWCGAAGLEDAIT
                     LSDYYDHAFGKSYGVLMREWNLLARAVFVLNADNKITYVEYLDNVNEHPDYDAALEAV
                     K"
     gene            complement(5387..7837)
                     /locus_tag="U1404_001190"
     CDS             complement(5387..7837)
                     /locus_tag="U1404_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEM5348151.1"
                     /translation="MKQASYPIQGMTCASCALTVEKAVGKLIGIEEASVNLATEKLSV
                     SYDEKLLGLEDIRQAVEKAGYQLVDNLVTESYDISGMTCASCALTVEKALGKLEGVEE
                     VSVNLATEKATIRYSRHRQNPASLERAVEQAGYQLIRPEKVEGAADKGPSKEEKLWHR
                     FVWSAAFTLPLLYIAMGPMLPWGGLPLPALLHQPLVYAISQVILLIPILYIGRSFFQK
                     GFKTLLQGHPNMDSLIAVGTGAALVQGLLMIAFLLMGKEVAMHGHHPELYFESAAVIL
                     TLITLGKYFEARAKGQTSEAIKKLMNLAPKTAQVLRNGQEIQVPIEEVVVGDQVVVRP
                     GQQIPVDGQVLEGQTRVDESMLTGESLPVKKALGDNVFGGTLNQQGAITMQATKVGRD
                     TTLAQIIRLVEEAQGSKAPIAKLADQVSAIFVPVVMGLALLSGLAWYFLGQESWIFSL
                     SIIIAVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSGQAIETLQGVNTIVFDKTG
                     TITEGKPQVTDVHLLSTKNREQVLQLAASSEQFSEHPLAQALLQAAQTEKIDLLPATD
                     FQALSGRGLSVIIAEQTIYLGNERLMREQGIDVSKGRAVAEAFAQQAKTPVFLASQQE
                     VLAVIAIADKIKETSRQAVQALQTIGLEVVMLTGDNEKTAKAIAKEVGIEQVISQVLP
                     DDKANQVKHLQEQGKTVAMVGDGINDAPALAQAHVGLAIGSGTDIAIESADIVLMHSD
                     ILDVVKAVKLSQATMRTIKQNLFWAFAYNVIGIPVAMGLLHVFGGPLLNPMFAGAAMA
                     LSSVSVVLNALRLKTYKL"
     gene            complement(7958..9781)
                     /locus_tag="U1404_001191"
     CDS             complement(7958..9781)
                     /locus_tag="U1404_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HEM5348152.1"
                     /translation="MKKTFVRIATFLMLVCLFPVQLVQACSGFIIGKGLTTDGSILYG
                     RTEDYPYPPDNGAHNKNYIVVPAAAYAKGDMLVDESFGFTAPHLANEFKYTSTPDAAR
                     GDGSNGNFGAHGFNEKGVSMTATVTAIPNKKVLAVDPLVTAGGLGEAILIDYVLPRVT
                     SAREGIELIAKTIDEKGSAEGNIIVIADKNEVWYMEILSGHQYVAIKFPEDKYAIFAN
                     TYYLGHVDFTDTENVIASAKVEEVAKQAENYMMVDGKFHIAKSYGPENYADGDRSRTY
                     AGIKLLDPASSVTYEDAVYDLLRQPTDPSRRFSLQDTFALQRNRFEHLPEFRPDDEAG
                     KVKQGDNGANDQAADATYKYALGNENVIDAHVYQINSSLPSAFGGTVWLGLAQTRNTP
                     YVPFYGIVTDTYEAFKNRSASYDTNSWYWTVQNIDKMAISHPELFGTSIQEKWIALEK
                     EWIASQAALDAQYAGLSEDAAVALAPTVTEATLARSAEIFAQLKAVEAEMMAKIEAAT
                     TPSSSSTEPSTSTEPSSSGTETSTSTSQSTSDSNTGGATDTSSSSGTVVPSDKKVTPT
                     NKKGKSNLPSTGEQVSILLVALGVAGILTAIFLHRKKSSKE"
     gene            complement(9975..10835)
                     /gene="tehB"
                     /locus_tag="U1404_001192"
     CDS             complement(9975..10835)
                     /gene="tehB"
                     /locus_tag="U1404_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HEM5348153.1"
                     /translation="MTVLVPYKRMPIWNQDTVPQHFLTKHNTKVGTWAKIKVLRGQLK
                     FEPISDDNEILGEYVYGPTADIPFVEPQAWHRVTLLTEDTEFFLEFFCQPEDYFAKKY
                     DYTRTHSEVLEALKRIEPCKVLDLGCGHGRNSLYLAQQGFEVTAVDKDVPSIRTLLQV
                     KEVEDLDLQAGTYDINSASLEQDYDWIISTVVFMFLERDRVPAIIRNMQEQTRPGGYN
                     LIVAAMDTEDAPCPMNFSFTFGVGELKEYYRDWELVKYNEDFGQLHKRDENGHFLKMR
                     FATMLARKKG"
     gene            10989..12032
                     /locus_tag="U1404_001193"
     CDS             10989..12032
                     /locus_tag="U1404_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent alcohol dehydrogenase"
                     /protein_id="HEM5348154.1"
                     /translation="MKTAIYEKSGKMTVAEIEKPSLQAKDDVIIKVVRACVCGSDLWG
                     YGEDIHHDHGDTNSGHEAIGIVEEVGEDITTLVPGDFVIVPFTHGCGHCDACRAGFDG
                     TCDNHPGYTNWGNNYQSQYIRFHYGNWALVKIPGQPSDYSEGMIKSLLTLADVMPTGY
                     HAARVADVKPDDKVVVIGDGAVGQCAVIAAKMRGASQIVMMSRHTDRQQMALESGATA
                     IVAERGEEGIAKVREILGGGADAALECVGTEASIDQALGVLHNGGRIGFVGVPHYNNH
                     ALGSTFAQNIIIGGGSASVTTYDKEILLDAVLKGDINPGRVFTQTYSLDNIDQAYKDM
                     ANRKTIKAMITVD"
BASE COUNT         3264 a         2937 c         2526 g         3381 t
ORIGIN      
        1 cagtcgtaat ggccagattt ggagtgcaaa acacgaacaa atctgccaat caaccactgc
       61 gctgagatgt tgacacgaac tctgagtagt ggtcctgggc tttttgctca gcctcttttg
      121 aatcgcaaga ctgtcattct ctttttaaaa ttccttccaa accaagactg tgcctcgctc
      181 tccgatttca aggctcgggt taaaacagtc tattcccaga ctgttttaat caactgactt
      241 caaggcttcc agcatatcca cctttctcag atggtgattg acgtaccaac caagaacagc
      301 caaaattcca ctaatggcta agataggaat gagatagact tctagtccga cagatggatt
      361 gaagcggata ctgtccgaac caatcatggc aagaaggagc ttgtggagat aaataccacc
      421 aaccagtcca accaacatgc caatcagcga aaggacaatg gtttcgcgat agatgtacat
      481 ggtcacctct ttattgtgga agcccagtac cttgatggtg gataattcac gaatccgttc
      541 agacatattg ataattgtaa ggttgtaaag aataaccaag ccaagcaaga tggataggat
      601 gactagaatg gtcatgatgg tctgaagcga gcctgcaatc gtggtaagca tatctataag
      661 agaagtattt tgaaccaaac ttctgactgc tggcatcgct aggagttgac ttgcaagagt
      721 ctgaatatgc cccaactgac tgtctttcaa ctgaaccaaa taggcattgg cagtcttctg
      781 cttgccggtc acttgttcgt agtagctatc tgtcatatag ataaaatgcc ctgcgtacat
      841 atcagccaca gcctctaccc tgactgaaac ttccttatct tccaaggtca gtgataactt
      901 atcaccaact gagaccccgt agatttgcgc caatttttct gtgaggacaa tccccctgtc
      961 actcagttta ataggctgac ctgtcgaact ttccagactg acttgatttc caaaatcccg
     1021 acggtctgaa atgtagagac taatcgataa attctttctc tgaccgtctt cttccaccgt
     1081 ttgattgagc tgttcaaaag ccactggcaa ggattggcga acctgatctg actgaagaaa
     1141 atgtgttaac ttatccaact cttcctcagt agctctgctg ttttccacca ccaacatatc
     1201 ataatggatc agctccccaa actgtcgttg gacaactcct gagatggagg aacggatacc
     1261 cagtcctcca aaaagaaggg cgacggtccc tgctactcca aagatggtca taagcatacg
     1321 aagcttgtag cggaagatat tgcgggctgt caccttatgg gtgaagctca ggcgggacca
     1381 gatagccggc catttttcaa gccaaatgct ggagcctgta acaggtggct taggtaaaag
     1441 tagctgagca ggtttttctg tcagctcccg acgagccacc aagtaagctg gcaggaccga
     1501 ggaagccaaa gacaggagca aggctaaacc tgtccaaagg ggataaaaat gaagtttagc
     1561 tggtccaatc acggttgtct gcgtaataat gttggaaata agtggagaca ggaggagatt
     1621 gcctgctatt ataccgacta ttgttcctac cagacctgcc gtcaaaccat agagaatgaa
     1681 cttagccata atctgtctat tcgtatagcc aagggccttg aagagacctg actgtgttcg
     1741 ctcttcatcg acaaaacggg ccatggtggt aaaagtcact agagctgcga caaggtagag
     1801 aacaactggg aagacattgc ccactgcagc aatagaccta gtcgcattgc tataggtagt
     1861 atagccatct ccacctggta ggcttgatcg agtatagacc tgatagggcg ctttttccag
     1921 cttgcttaag tcggattttg cctgagcaat ctcggtttga gcttggctaa tttcttgatc
     1981 ggccgtggct ttcttctcag aaaattggga ttgagcttga cttaactctt tatcagcctc
     2041 ctccaaacgg aattcttcct gacggagcag ttgatttgaa gactctaact gacttagtcc
     2101 ccattcatag tcttctactc ctttattgta ggctgcaatg ccttgttcat actgactcaa
     2161 acctgcttga taacgggcca aacctgcctg atattcttga ttccaagttt ggtactgggc
     2221 tagattgcta ttgtattcat tttgtttggt ttgatagtaa tcataacctt gtaaataggc
     2281 ttggttggcc tgctcatgtg cagattccat ttggtctaat cggcttttct caacatccaa
     2341 accttcctgt ctagccaaca agtcaggata gtctgagagg gtttggcctt cttgcaagtg
     2401 attggcaatt tcaaggtcta actcttgctg agcttgaaac caactagctc gccctgtgga
     2461 aatctgagat gcggtctgac tcagttgggc attttgggaa tccaattctt gcttggcctc
     2521 ttctaactgc tgggctgacg tttctaattc catctgatag ccgtctagaa acgaagcagt
     2581 ctgttctaat tgagccttac gcccgtccaa ttccttttta ctttcttcca attcaaactt
     2641 attttttaat agttgggctt gggcagctcg taattcagct tccgtttgga caaccttagc
     2701 cctaccacgc gcaaactctc tacgacctgt cgctaattgc tcctcccctg tttccagttc
     2761 tgactctgcc tgttcaagct gagattgagc ctgagcaatt tcctcttccc cttttgaaat
     2821 atctgtctgt ccatctgact gaatagctgc caatcgttgt tcatcattgt tagccaataa
     2881 cttttctacg tcttcttggt gctggtccaa cctgtcttga taggcctgac tgtaatatgg
     2941 taaatcaacc aaatcatcat agcgaatacg ggcaatagtg taaacttctg atttgaaggt
     3001 atcctgacta acaaggccat agccacctaa ctgcccatca ccacttgcag ccatgcccat
     3061 ggtttcattg tcccaaattt ctgctgatgc gacaaagccc acaagagtaa aacttgtctg
     3121 tgtcaagatt tttccatcct tatcagactc cgtcacttga acagtatcgt ccaatttgta
     3181 acgatttttg aaagaagctg atagggctat ttgccccttt tgactgggca tttccccttc
     3241 tactagctta taggtcgata gggtctgggg agctgaaaac agccgaattg cagtctgacc
     3301 ttcattagta accacatctt taaagtagcc cgcttcaaga gtagcacctt ctatcgtttc
     3361 taattcgtca aggtcagctt gactaagtcc cagacctgaa attactgcca aatccatcgt
     3421 tcgatgactg gctatatagg cttgggccgt cttttccata ttgggagctg ttactttcag
     3481 acctgtcaaa gctagagctc ctagcatcat caggctaaat atggacaaaa aacgcccctt
     3541 ggaagaaagc agagattgtc tcatatcctt ccagtagatt ttctttttca tagtttcacc
     3601 cactaatatt ctaggcttgc aatatcctgt ggttctgcgt gtaactcaac agagtgcaca
     3661 cgggcgtccc gcatccgaat gaccctatct gcaataggag ccagagagct attgtgggtc
     3721 acgataatca ccgttgtccc ttgtgtgcgg gacatatctt gtaggatttg taagacctgc
     3781 ttacctgttt ggtagtccag agcgccagtt ggttcatcgc aaagcaaaat tttaggcttt
     3841 tttgcaaccg cacgggcaat ggccacacgt tgttgttcac cgcctgaaag ctgagcaggg
     3901 aaattattga ttcggtgacc gagtccgacc tgttccaaga cttcctcggc atccaaggca
     3961 tccttgacga tttctgctgc cagttccaca ttttccttgg cggtcagatt ggcaaccaag
     4021 ttataaaatt gaaatacaaa acctacatca tctctacgat aattggtcaa ttcatgactt
     4081 gaaagcttgg caatatccac accgtcaatc caaacctcac cctcatcgtt gctatccatg
     4141 ccacctaaga tattgagcag agtggatttg cccgcaccag atgaacccag aatgatgacc
     4201 agctcaccct gctcaatctc aaaggacaca ccatcattgg ccacaatggt cgcatccccc
     4261 atttggtagt attttgacga attctttact tggatatagg acatgataca cctcgcttct
     4321 tctcttccta acaactgtat tcttactact tattatagca caaaagaggg ttttcaccct
     4381 ctccttcatc ttttacactt gggcaatagc agagccgcca tagagtttga gttcttctct
     4441 gatcgtttcg tagtaatatc ggtcaaatgc ccgccaagcc tgcctgctgg tttcactcaa
     4501 tcgcaggtcg cccagtccaa ccaaaaaact ggtcgaacga taaaatttct caatcgcaat
     4561 cagttctgta ttggtaacag actcggcctc cgacaatatg cgtgtcgtct ctgtcagatt
     4621 atgttggaac cgttgttcat cagctgttcc tactttatct gcttgaaagg cccgattcaa
     4681 gtcttgaatg agggccaaaa catcttgaat aatctgtgtc ttttccataa aagaccctcc
     4741 ttgtttttga taaatttagt atatcaaatt agacaaaaat attccatcaa aaaacgatgc
     4801 ctgttccggc accgttatat ctttatttaa cagcctccaa agccgcatca tagtctggat
     4861 gctcgttgac attatccaag tattctacgt aggtgatttt attgtcggca ttgaggacaa
     4921 agaccgcacg cgccagcaaa ttccactccc gcatgagcac accgtaggat ttaccaaagg
     4981 catggtcata gtaatcagac agggtgatgg catcttccaa acctgcagcg ccacaccagc
     5041 gtttttgggc aaaggggagg tctgctgaaa ccgtaataac aaccgtattg tcacggtcag
     5101 ccaattcttg attgaagcga cgagtttggg tatcgcaaat ccctgtatca atagaaggca
     5161 caacactgat gaccttagtc tgcttgccaa agtctttcag gcttttcaag ctcaagtcat
     5221 tggccatgag gacaaaatca ggggctacat ctcccactcg taactgcgga cctaccaagg
     5281 tcaccggttt tccaataaag gttgtcataa acatctccct tgcacttaat atatacattg
     5341 taagcgttta tgtaaaaaaa taccagtttt ttgactggta tttttgctat agtttgtagg
     5401 ttttcaatcg cagagcgttc aagacgactg acactgagct gagggccatg gctgcacctg
     5461 caaacatagg attgagcaga ggtccaccaa atacatgtaa cagacccata gcaactggaa
     5521 taccgatcac attgtaagca aaggcccaga agagattttg tttgatggtc cgcatggttg
     5581 cctggctgag tttgacagcc ttaaccacat ccaaaatatc actatgcatg aggacaatgt
     5641 cggcagactc aatggcaata tcagtccctg aaccaatggc tagacccaca tgggcttgag
     5701 ctagagctgg ggcatcgttg atgccatccc ccaccatagc gactgtcttg ccctgttctt
     5761 gtaagtgctt gacttggtta gccttgtcat ctggtaggac ctgactgatc acctgttcaa
     5821 tgccgacttc cttggcaatg gctttggcag ttttttcatt atctcctgtc agcatgacaa
     5881 cctctagtcc tatggtttgc agagcctgga cagcctgacg gctggtctct tttattttat
     5941 cagcaatggc aatgactgct agtacttctt gctggctggc taggaaaaca ggcgtcttgg
     6001 cttgctgggc aaatgcctcc gcaactgcac gtcctttgga aacatcaatt ccctgttccc
     6061 gcatcaaccg ttcatttccc agatagatgg tctgctctgc tattatcacc gaaagaccac
     6121 gaccagaaag tgcctgaaaa tctgtggcgg gcaagagatc aatcttttct gtctgagctg
     6181 cttgcaggag agcctgagcc aagggatgct cggaaaattg ctcgctactt gcggccagct
     6241 ggaggacctg ctcacgattt ttagtagaca agaggtggac gtctgtcacc tggggtttgc
     6301 cctcagtaat ggtcccagtc ttgtcgaaga caatggtgtt cacaccttgt agggtttcaa
     6361 tagcttgacc agacttgaac agaaggccat tttctgcacc ttttccagta ccaaccatga
     6421 tggcagtcgg cgttgctaag cccagagcac aagggcaggc gatgaccaag acggcgatga
     6481 taatgcttaa tgaaaaaatc catgattctt gacccaagaa gtaccaggcc agaccggaca
     6541 agagagccaa gcccatgacg actggtacaa atatggcaga tacttggtca gccaatttgg
     6601 cgatgggagc cttagaacct tgagcctctt ctaccaagcg aataatctgg gccagagtcg
     6661 tatcacgacc aaccttggta gcctgcatgg taatggcgcc ttgctggtta agggtgccgc
     6721 caaaaacatt atcgcctaga gctttcttca ctggtaggct ctcacccgtc agcatagact
     6781 catccacacg tgtctggcct tcgagaacct gaccatcaac aggaatctgc tgacctggac
     6841 gaacaacgac ctggtcaccg accaccactt cttcaatcgg cacttgtatt tcctgaccat
     6901 ttcgcaagac ctgggccgtc ttgggagcca gattcatcaa tttcttaatg gcctcagaag
     6961 tctgaccttt agctctagct tcaaaatatt ttcctagggt aatcaaggtc aagataacgg
     7021 cggctgattc aaaatacagt tctggatggt gaccgtgcat ggccacttct ttccccatca
     7081 gaagaaacgc aatcatcaaa agaccttgaa ccaaggctgc ccctgtccca acagcaatca
     7141 aggaatccat atttggatgg ccttgcaaga gagttttaaa gcctttttgg aaaaaactgc
     7201 gtccgatata gaggataggg atgagcaaga tgacttggct gatcgcatag actagcggtt
     7261 ggtggagcaa agctggtaat ggaagccctc cccaaggcaa cataggaccc atagcaatat
     7321 agagcagtgg aagagtaaat gctgctgacc agacaaatcg atgccacagc ttttcttcct
     7381 tgctcggtcc cttgtccgca gccccttcta ctttttctgg tctaatcaac tgataacctg
     7441 cctgctcaac tgctctttca agactagctg gattttgcct atgacggcta taacgaatag
     7501 tcgccttttc tgttgccaga ttgacagaga cttcttctac accctctagt ttgcccagag
     7561 ctttttcaac cgtcagagca caggaagcac aggtcatgcc tgaaatgtca taagactcgg
     7621 tcaccaagtt atcgactaac tgataacccg ccttttcaac tgcctgacga atatcctcta
     7681 gtcccaaaag cttttcatca tagctaacac tcaatttttc agtcgctagg ttgacactgg
     7741 cttcttcaat ccctattagt ttaccaaccg ctttctcaac cgtcagagca caggaagcgc
     7801 aggtcatacc ttgaatggga tagcttgctt gtttcatagg ttactcctct ttcgactaca
     7861 tctgtaaaca aattatacaa catatgacta catttgtaaa caaaattgtt tcaaaaaagt
     7921 agattgaaat caatccaacc tacttttaca tattcattta ttctttactg gattttttcc
     7981 gatgaagaaa aattgctgtt aaaattcctg caacacctag cgcaaccaac aagatgctga
     8041 cttgctcacc tgtactagga agatttgatt tgcctttttt attggtaggt gttactttct
     8101 tatcagaagg cactactgtt ccgcttgatg aggaagtatc cgtagctcct cctgtgttag
     8161 aatcacttgt agactgactt gtactggttg aagtttcggt accacttgat gatggctcag
     8221 tgctggtcga tggttcagta ctacttgatg acggagttgt tgctgcttca atttttgcca
     8281 tcatttcagc ttcaacagct tttagttggg caaaaatctc tgctgaacga gccaaggttg
     8341 cctctgttac agttggagcc agagctacgg ctgcatcttc tgaaagtcca gcatattgag
     8401 catcaagagc tgcctgtgaa gcaatccatt ctttttcaag tgcaatccat ttttcttgaa
     8461 ttgatgtacc aaataactct gggtgtgaga tggccatctt atcaatattt tgtaccgtcc
     8521 agtaccatga attggtatca taagaagctg agcgattttt aaaggcttca taagtatcag
     8581 tcacaatacc ataaaatgga acatacggtg tattccttgt ctgagccaag cccaaccata
     8641 ctgtgccacc gaaggctgat ggtaagctac tattaatctg ataaacatgg gcatcgatga
     8701 cgttttcatt accaagagcg tatttataag tcgcatctgc cgcttggtca ttcgcaccat
     8761 tatccccttg ttttacctta cctgcttcat cgtctggacg aaattctgga agatgttcaa
     8821 aacggttacg ttgtaaggca aaggtatctt gtaaactaaa gcgacgactt gggtctgttg
     8881 gctgacgtag caaatcatac acagcatctt cataggttac agacgatgct ggatctaaca
     8941 attttatacc agcgtatgtc cgagaacgat caccatcagc ataattctca ggtccatatg
     9001 atttggcaat atggaacttc ccatcaacca tcatataatt ttcagcctgt ttggctactt
     9061 cttcaacctt tgcagaagca atcacatttt ctgtatcggt aaaatcaaca tgacctagat
     9121 agtaagtatt tgcaaaaatt gcatacttgt cttcagggaa cttgatggct acgtattggt
     9181 ggcctgacaa aatttccatg taccaaactt cattcttatc agcaataaca atgatattcc
     9241 cttctgccga acctttttca tcaattgtct tcgcaattaa ttcgatacct tcacgcgcac
     9301 tggtgactct aggaagaaca tagtcaatca aaatggcctc acctagtccc cccgcagtta
     9361 ccaatgggtc aacagctaaa acttttttat ttggaatagc tgtaacagta gcagtcatgg
     9421 acacaccttt ttcattaaat ccatgcgcac caaaattacc gtttgaccca tccccacgtg
     9481 ccgcatcagg cgtagaggtg tacttgaact catttgccaa gtgtggtgct gtgaaaccga
     9541 atgattcatc caccaacata tcccccttgg cataggctgc tgctggaacc acaatataat
     9601 ttttattgtg cgctccatta tctggtggat agggataatc ttccgttcta ccataaagga
     9661 tagaaccatc cgttgtcaac cctttcccaa taataaagcc tgaacaggct tgaacaagtt
     9721 gaacagggaa taggcaaacc aacattagaa atgtggctat acgaacaaaa gtctttttca
     9781 tagacttctc ctttcctgat actctgtgaa aatcagaagt aggcgccctc cagagatata
     9841 aactcagaga ctattttaca caagtctctt atccaaccag aaggtgattt tcgtggagta
     9901 taatatgatt tacccatttg cacctacatt gtaacgcaaa agcacctgcc ttgcaagtgc
     9961 tttcaaaaaa atatttatcc ttttttccta gccagcatgg tcgcaaaccg catcttgagg
    10021 aaatggccat tttcatcccg cttgtgaagt tgaccgaaat cttcattgta tttgaccagt
    10081 tcccagtcac ggtagtattc cttcaactca cctactccaa aagtaaagga gaaattcata
    10141 ggacagggcg catcttccgt atccatggcc gccacaatca agttatagcc accaggtcgt
    10201 gtctgctcct gcatattgcg gataatggct ggtaccctat cccgctccaa aaacatgaag
    10261 accacagtcg agataatcca gtcgtagtcc tgctccagac tggctgaatt gatgtcatag
    10321 gtcccagcct gcaagtccaa gtcctccact tccttgacct gcaagagtgt ccgaatactt
    10381 ggcacatcct tatcgaccgc cgtcacctca aatccctgct gagccaagta gagactgttc
    10441 ctaccatgac cacagcccag gtccaagacc ttacaaggct caattctctt caaggcctcc
    10501 aagacttccg aatgtgtccg agtatagtca tactttttgg caaaatagtc ttctggttga
    10561 cagaaaaatt ccaagaaaaa ctccgtatcc tctgtcagca aagtcacccg atgccaagcc
    10621 tgtggctcga caaagggaat atcggctgtc ggaccataga catattctcc caaaatctca
    10681 ttatcatctg aaatcggctc aaatttaagt tgacctctca agaccttgat tttggcccaa
    10741 gtacccacct tggtattgtg cttggtcaaa aaatgctggg gaaccgtatc ctgattccaa
    10801 atgggcatgc gtttgtaagg aactaaaaca gtcattatct ctccttttct ttccgataca
    10861 cttagtctat cacaaaggaa atatgaattc aaacctattt ttttcttgac ttggagtgaa
    10921 ctccaaggtg tataatattc catattaatc agaaaggata tttactgaca agtaaatgtg
    10981 tgatgaatat gaaaacagct atttatgaaa aatccggtaa gatgaccgtt gcagaaatcg
    11041 aaaaaccaag ccttcaagcc aaagatgatg tcattatcaa ggtcgttcgg gcctgtgtct
    11101 gtggatcgga cctttggggc tacggagaag acattcacca tgaccacggt gacacaaact
    11161 ctggtcatga agccatcggt atcgttgaag aggtaggcga agacatcaca acacttgttc
    11221 ctggtgactt cgttatcgtt ccatttacac atggttgcgg acactgtgat gcctgtcgtg
    11281 ctggctttga cggtacttgt gacaaccatc caggctacac caactggggc aacaactacc
    11341 agtctcaata cattcgtttc cactacggca actgggcctt ggtcaaaatt cctggtcagc
    11401 caagtgacta ctcagaaggc atgatcaaat ctctcttgac tctggcagat gttatgccaa
    11461 ctggctacca cgcagcccgt gtagcagatg tcaaacctga tgacaaggtt gttgtcatcg
    11521 gtgatggtgc agtgggtcaa tgtgctgtaa ttgctgcaaa aatgcgcgga gcttctcaga
    11581 ttgtcatgat gagccgccat acagaccgcc aacaaatggc tttggaatca ggggctactg
    11641 ccatcgtagc agaacgtggt gaggaaggaa ttgccaaagt ccgtgaaatt cttggaggtg
    11701 gcgctgatgc tgccctcgaa tgtgttggta cagaagcctc tattgaccaa gccctcggcg
    11761 tgcttcacaa tggtggtcgt atcggttttg tcggtgtacc acactacaac aaccacgccc
    11821 ttggctcaac ctttgctcaa aatatcatta tcggtggtgg ctctgcttct gtcacaacct
    11881 atgataagga aattttgctc gatgccgttc tcaaaggcga catcaaccca ggtcgagttt
    11941 tcacccaaac ttacagcctg gacaatatcg accaagccta caaagacatg gccaaccgga
    12001 aaacgattaa agctatgatt acggtagatt aagataaata ataagcccca gatagtctcg
    12061 aaactgtctg gggtatttgt tttccgataa caaaaaagac caggattt
//
LOCUS       DASGCC010000063        12093 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.063, whole genome shotgun sequence.
ACCESSION   DASGCC010000063 DASGCC010000000
VERSION     DASGCC010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12093
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.063"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(207..4466)
                     /locus_tag="U1404_001194"
     CDS             complement(207..4466)
                     /locus_tag="U1404_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HEM5348155.1"
                     /translation="MKKETSKFTKKVILGQLLICTSFLVWAGQTVAAEEVSQGEPVAI
                     NNETPPAIEAKPLVEATPSTETEPSTPEEKQEEPQVADKNVVEGKKPVTNSQHQMVSE
                     LSTVPSVSIKNPDAATDGSAYGSSDDANSNTKIIAGKETGESDNGYSKWDHVYVQYDF
                     EKEVPVHTVKIHRNTYDNAVSTFKDVKVELSTSVDFSPETTEVIFKQADVEETIANKG
                     QPQVIQLPAPINARYIRIWGRGHYIQNTNSSWKGYSNGVLFNEIEVLAQVEADAGTNE
                     EPQTELVNLAKLKKPYFYGKAPTNPEAINDGKFDENYTTQESIGDKAYLQYEFRNVYT
                     IEEIKVQLAPGEYRNFRIDLDDDYNDGNNYNTIYKNENFTIDKEQIITIKTPKNSKAR
                     YVRFRGTRVDDTPLRYSEIQIMGRGKSYDESAPEYVPPKSEYDTLVWSDEFNGDKIDE
                     SKWQIIDGMWNHAAIYNRKAVSIKKDGDKSYLSIRSTNHKDKKALVEAVGHDRYDDKE
                     LPDKVTWSSGRLESKDKYSFQFGRMAVRAKVNDSKGIWPAIWMLAQDETGHDEIDVLE
                     YLGQNPWDAWTTNHFGILAKNKKSDGSAYKNYEAWSQEFHVYEVEWTPDVIKWYIDGK
                     FVFQTDRGKDRDGMHTRPMFPILETQVGDGWVGDVDYKRNMTKQDSEYLVDWVRIYQK
                     ADQSKVHFDNLDDAKPNDYVIKPQQKLGHLVTVSNGKAAHENKNNFYYGGQPRYETSR
                     LYADGDGENALVYKIANPEALHLTTYYKTLEDYSVYNKEAGANEGKSVRKHLINAKDG
                     EIDFTVYSSVDGKSWNKENVTVVDNFVEATPAYARTTFDIRNIRKGTKFVKIVFPTVK
                     GISYKLEDGTEKGLQASDVQLAKVTFVATHPEAEPEKPIVDQEKLALSKVFSLDAGRK
                     YFSVNQIKEIIDLISSYGYTDMNLLLGNDGLRFLLDDMNLTVGDKVYDSEAVRKAIIN
                     GNKHYYDDPNGTTLSQSEMDDILAYAKEKNISIIPTINSPGHMDAIVEAMEELGIKSP
                     KFSYNGKTSARTVDLKNDQAVAFTKALIDKYASYFAGKSKIFNIGLDEYANDATNASG
                     WHILQTQGDYGKFIQYANDLAAIVKKHGLEPMAFNDGIYYNHDTSSGTFDKDIIASFW
                     TGGWGGYDVASSKFLHEKGHKILNTNDAWYYVIGREAEGLGWYNLDQGLRGTKSTRFD
                     QVPKSENTKVPIIGSMVAVWADDPSKPYSYDSIKKLLHSFTENNSDYFWAEYRDLREE
                     VGKIPTDLNSYTPESVATLKEVLNKIDWKLSRNNQAFVDGYLAEVKAAREALVPVTAK
                     GDSVKAEPLPEGKLPLITAKGKSVQAEPRPAFKGYLTSNYGPSVTPLSLVSKPSSEQS
                     RSQQAAYQKKELPNTGAVDGLGFSLLGMLGLAFASRRRKEE"
     gene            complement(4837..6177)
                     /locus_tag="U1404_001195"
     CDS             complement(4837..6177)
                     /locus_tag="U1404_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEM5348156.1"
                     /translation="MRTSFIQSSHQEACIQAIQELVAFPSVLQEHQADTPFGQAIQDV
                     LEHTLALTEKMGFKTYLDPAGYYGYAEIGQGEELLAILCHLDVVPAGDLSQWQTPPFE
                     AVVEGDYIIGRGVQDDKGPSMAALFAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNR
                     YNQLEEVATMGFAPDSSFPLTYAEKGLLQAKLHGPGHPCLSIEAGTAYNVVPAKASYS
                     GHLLAGVIAELDQLGFDYETKDDQVTVLGISRHAKDAAEGVNAIVRLAKALEHFENHP
                     ALDFIVNAVGEDATGFKLFGDVTDEPSGTLSFNIAGLTISAKKSEIRLDIRIPVTADK
                     EALVSTLQAKAQSCGLTYEEYDYLASLYVPLDSQLVSTLMSVYQDKTGDLTSEPISSG
                     GATFARTMPNCVAFGACFPDTEQTEHQENERMPLEDLYKTMDIYAEAVYRLAAE"
     gene            complement(6296..7798)
                     /locus_tag="U1404_001196"
     CDS             complement(6296..7798)
                     /locus_tag="U1404_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HEM5348157.1"
                     /translation="MSEKVKKGFKLPSSYTILMLIIAFMAVMTWIIPAGQYQVDEAGH
                     LVAGTYEKVAQNPQGIYDVFMAPVRAMLGHGATEAAINVAFFIIMVGAFLGVVNETGA
                     LDVGIASIVKRFKGREKMLIYILMTLFALGGSTYGMGEETMAFFPLLVPVMMAVGFDS
                     ITGVAIILLGSQIGCLASTVNPFATVVASDAAGVSVADGMIWRFVFFVVILAMGVLFV
                     ANYAEKVKNDPTKSLVYKQREADMQHFNVTATQEVNAELSPAQKRVLWVFVLTFVLMI
                     CSFIPWEDLGVTIFTQFNDWLIGLPFIGQVIGSSTAALGTWYFPEGAMLFGIAGIVVG
                     LVYGMSEERLVKSFMFGAADIFSVALICAIARGIQVIMNDGMITATILHMGEEGLQGL
                     SSQVFIILTYLFYLPMSFLIPSSSGLAGASMGIMAPLGEFVNVPASLVITAFQAASGL
                     LNLVAPTSGIVMGALALGRVEIGTWYKFVGKLIVGIMIASIAILVIATFF"
     gene            complement(8140..9087)
                     /gene="arcC"
                     /locus_tag="U1404_001197"
     CDS             complement(8140..9087)
                     /gene="arcC"
                     /locus_tag="U1404_001197"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003025409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEM5348158.1"
                     /translation="MANRKIVVALGGNAILSSDPSAKAQKEALVQTAKHLVKLIKNGD
                     DLIITHGNGPQVGNLLLQNLAADSEKNPAFPLDSLVAMTEGSIGFWLQNALENELHKE
                     GIEKDVASVVTQVIVDKNDPAFENLTKPIGPFYTEEEAKAEAEKTGATFKEDAGRGWR
                     KVVASPKPVGIKEIGTIRTLLNAGEVVVAAGGGGIPVVQEADGTLTGVEAVIDKDFAS
                     QCLAELVDADLFIVLTGVDYVFVNYNKPDQEKLETVTVAELEEYIKQNQFAPGSMLPK
                     VEAAIAFVNNKPQSKAVITSLENLGALIESDSGTIIVKG"
     gene            complement(9205..10218)
                     /gene="argF"
                     /locus_tag="U1404_001198"
     CDS             complement(9205..10218)
                     /gene="argF"
                     /locus_tag="U1404_001198"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM5348159.1"
                     /translation="MTNVFKGRHFLAEKDFTRAELEWLIDFSAHLKDLKKRNIPHRYL
                     EGKNIALLFEKTSTRTRAAFTVASIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMF
                     DGIEFRGFSQKMVEELAEFSGVPVWNGLTDAWHPTQMLADYLTVKENFGKLEGLTLVY
                     CGDGRNNVANSLLVTGAILGVNVHIFSPKELFPEEEVVALAEVFAKESGARVLITDNA
                     DEAVKGADVLYTDVWVSMGEEDKFAERVALLKPYQVNMELVKKAENENLIFLHCLPAF
                     HDTNTVYGKDVAEKFGVEEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGDPFV
                     PRV"
     gene            complement(10237..10677)
                     /locus_tag="U1404_001199"
     CDS             complement(10237..10677)
                     /locus_tag="U1404_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348160.1"
                     /translation="MPSIERTTIGSEEWQRAASIYVRYKVFVLERGIAKEGEFDQNDT
                     EGRVYANLFIGEEPVSTGRFLPVGPGQARLTRIATLPNFRGKGYGKMIISSLEAYARE
                     AGFHQLNIHSELTAKTFYESVGYQATSEVYQEDGEWCQTLTKFI"
     gene            complement(10677..11909)
                     /gene="arcA"
                     /locus_tag="U1404_001200"
     CDS             complement(10677..11909)
                     /gene="arcA"
                     /locus_tag="U1404_001200"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HEM5348161.1"
                     /translation="MMSNHPIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDI
                     PFLEDAQKEHDAFAQALRDEGVEVLYLEKLAAESLVTPEIREQFIDEYLEEANIRGRA
                     TKKAIRKLLLSIEDNQELVEKTMAGIQKAELPEIPAEEKGLTDLVESSYPFAIDPMPN
                     LYFTRDPFATIGNAVSLNHMYSETRNRETLYGKYIFTHHPEYGGKVPLVYNREETTRI
                     EGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFEQHVGFKKVLAFEFANNRKFMHLD
                     TVFTMVDYDKFTIHPEIEGDLRVFSVTYENDTLHIEEEHGDLAELLAVNLGLEKVELI
                     RCGGGDMVAAGREQWNDGSNTLTIAPGVVVVYKRNTITNAILESKGLRLIKIGGSELV
                     RGRGGPRCMSMPFEREDI"
BASE COUNT         3517 a         2697 c         2170 g         3709 t
ORIGIN      
        1 gaaaatctcc cgtaataaga tttattacgg gggattttta gtagcctata aaaaattatc
       61 ctattattca tagccttcta gtttactttt tgtacaaggc aatgagctac atgctatact
      121 tgggtacagc aaagcgagtg aaagaaaaac tagataacta tataattaca attagaaagc
      181 cctgaacctt aattcaagtg gctacattac tcctccttcc gccggcgact agcaaatgcc
      241 agaccaagca taccaaggag agagaatcca agaccatcta ctgcgcctgt atttggcaat
      301 tctttcttct gataagctgc ttgctgggag cgtgactgct cactacttgg ttttgatacg
      361 agagataaag gtgtgacaga tggtccatag tttgaggtta ggtatccctt aaaggcaggg
      421 cgtggttctg cttggacact ttttccttta gcagtaatca gaggtagctt gccttctggt
      481 aagggctccg ctttgacgct gtctcctttt gctgtcacag gaactaacgc ttcacgcgct
      541 gcttttactt ctgccaagta accatcaaca aacgcttggt tatttctact tagtttccaa
      601 tcaatcttgt tcaagacctc ttttaaagtc gccacgctct ctggtgtata ggaatttaaa
      661 tcagtaggaa tcttcccaac ttcttctcgc aaatctcggt actctgccca aaaataatca
      721 gaattgtttt ccgtaaaact gtgcaaaagt tttttaattg agtcatagct gtaaggcttg
      781 cttgggtcat ctgcccatac cgcaaccatg ctaccgataa tgggtacctt agtattctca
      841 gatttcggta cttgatcaaa ccttgttgat ttagttcctc gaagaccttg atcaaggtta
      901 taccatccca aaccttctgc ttcacgtcca ataacatagt accaagcatc atttgtatta
      961 agaattttat gccctttttc atgaaggaat tttgaggaag caacatcata tcctccccaa
     1021 cctcctgtcc agaaagaagc aataatgtct ttatcaaaag tacccgaact agtatcgtgg
     1081 ttataataga taccatcatt gaaagccatt ggctctaaac catgcttctt gacgatagct
     1141 gctaaatcat tggcatattg aataaactta ccataatcac cttgtgtctg aagaatgtgc
     1201 catccagaag catttgtagc atcgttagca tactcatcta agccaatatt gaaaatttta
     1261 gatttgcctg caaagtaact agcatattta tcaattaagg ctttagtaaa agcaactgct
     1321 tggtcatttt ttaaatcaac tgtacgtgca gatgttttgc cattataact aaattttggc
     1381 gattttatcc ccaattcttc cattgcttct acaatcgcat ccatatgacc tgggctattg
     1441 atagttggaa taatggaaat atttttttcc ttagcataag caagaatatc atccatctca
     1501 ctctgactta aggttgtacc gtttggatcg tcataataat gcttattacc atttattatt
     1561 gcttttctaa ctgcttcact gtcatacacc ttatctccaa cggtcaaatt catatcatct
     1621 aataaaaatc tcagaccatc atttcccaat aagaggttca tatccgtgta accataagaa
     1681 gaaattaaat caataatctc ctttatctga tttacagaga aatacttgcg accggcatcg
     1741 agtgaaaaaa ctttggacaa ggctagtttt tcttgatcaa caataggttt ttctggttct
     1801 gcttcaggat gagtagctac aaaagttact tttgctaact ggacatcact ggcttgcagg
     1861 cctttctctg ttccatcttc caacttatag gaaatacctt taaccgttgg aaagacgatc
     1921 ttcacaaatt tagtaccttt tcgaatgttg cgaatatcaa atgtagtgcg tgcataagct
     1981 ggggttgctt ctacaaaatt atccactaca gtaacattct ctttattcca gcttttgccg
     2041 tcaacagatg agtacacagt gaagtcaatt tcaccgtctt ttgcatttat caaatgtttg
     2101 cgaacagatt ttccttcatt agcccctgct tctttattat agacagaata gtcttcaagt
     2161 gttttgtaat aagttgttaa gtgcaaagcc tctggattag caatcttgta aactagtgca
     2221 ttttcgccat caccatcagc atagagcctg cttgtttcgt aacgtggttg acctccatag
     2281 tagaaattat ttttgttttc atgagctgct ttcccgttag agactgttac gaggtgacca
     2341 agtttttgct gcggcttaat aacataatca ttaggcttgg catcatctag attatcaaaa
     2401 tgtaccttac tttgatctgc tttttgataa attcgaaccc aatcaaccaa gtactcacta
     2461 tcctgtttag tcatgttgcg tttgtaatca acatcaccaa cccagccatc accaacttgg
     2521 gtttccagta tcgggaacat agggcgggtg tgcataccat cccgatcctt accacggtct
     2581 gtttgaaaaa caaattttcc atcaatatac catttgatga catctggagt ccattcgact
     2641 tcgtagacat ggaattcctg actccaagct tcgtaattct tataagctga gccatcagat
     2701 tttttatttt ttgccaaaat accaaaatgg ttagttgtcc atgcatccca tggattttga
     2761 ccaaggtatt ccaaaacgtc aatttcgtca tgcccggtct catcctgtgc caacatccaa
     2821 atagcaggcc agattccctt agagtcattt accttagctc gaacagccat tcgaccaaat
     2881 tggaaagaat acttatcttt agattctagg cgaccagaag accatgttac tttatctggt
     2941 aattctttat catcataccg atcgtgccca actgcttcaa ccaaagcttt tttatcctta
     3001 tggttcgtgc tacggataga caaatagctc ttgtcgccat cttttttgat agaaactgct
     3061 ttacgattgt atatagccgc atgattccac atgccatcaa taatttgcca tttactttca
     3121 tcaatcttgt cgccattaaa ttcatcagac cagactaatg tatcgtattc agattttggt
     3181 ggaacatatt ctggagcaga ttcgtcataa gattttcctc gtcccataat ctgaatttct
     3241 gaatagcgaa gaggagtatc atctacgcgc gtacctctaa agcgaacata acgcgcctta
     3301 gaattttttg gagttttaat cgttatgatc tgttccttgt caatggtgaa attttcattc
     3361 ttatagattg tattataatt attaccatca ttataatcat catccaaatc tatccggaaa
     3421 ttacgatact ctccaggagc taactgaacc ttgatttcct caatagtata gacatttcta
     3481 aattcgtatt gaagataagc tttatcccct attgattctt gagtagtata attctcgtcg
     3541 aactttccat cgttaatggc ttctggatta gttggagcct taccatagaa atatggtttt
     3601 ttcaatttag cgaggttgac tagctcggtt tgtggttctt cattcgtacc agcatctgct
     3661 tcaacctgcg ccaagacttc tatctcgtta aagagaacgc cattactata tcccttccat
     3721 gaactgtttg tattttggat ataatgcccc cgtccccaaa tacgaatata acgagcattg
     3781 attggtgctg gtaattggat gacttgaggt tgtcctttat ttgcaattgt ttcttctaca
     3841 tctgcctgtt tgaaaatgac ttctgtggtt tcaggagaaa aatctacact tgtagacaat
     3901 tccactttaa catctttaaa agtagagact gcattatcat aagtattacg atgaattttt
     3961 acagtatgga cgggaacttc cttttcaaaa tcatactgaa cgtaaacatg atcccacttg
     4021 gagtaaccgt tatctgattc gccagtttct ttaccagcaa tgattttggt attgctattg
     4081 gcatcgtcgc tactaccgta agcactccca tcggtagctg catctggatt ttttatagaa
     4141 acagaaggga ccgttgataa ttccgaaacc atctgatgct ggctgttagt tacgggcttt
     4201 ttcccttcta ccacattttt atcagctact tgtggttcct cctgtttttc ttctggagtt
     4261 gaaggttctg tttcagttga tggagtagct tccacaagtg gttttgcttc aatagcaggt
     4321 ggagtttcat tgttgattgc tactggttcc ccctgagata cttcctctgc tgcaacggtc
     4381 tgccctgccc ataccaaaaa actggtacag atgagaagct gaccaaggat gacttttttc
     4441 gtaaacttac ttgtttcttt tttcattatt tcctcctata aagtctgcaa gtttatccta
     4501 cctatagcca aaataaagca gtttttaaac ctatttagtc tcgtataaga ctcaaaattc
     4561 agtttactgg ttgatgtgcg atcgcatttc tgacacaaat ataacatgta agcgttttat
     4621 tgtagaatag tctaacttga cttattctat atgcagatgg gttctatttc taaaacagca
     4681 tataataagt cacactttca tatatttttg tatacttatc gtaaatagtg acacatttct
     4741 atctcatctt tctaatgata ttcttcataa gaaaagccct tagatatttc actaagagct
     4801 ttgaaactgt aatttactat tcaatactga taatggctat tccgcagcta ggcgatagac
     4861 tgcctcagca taaatatcca ttgttttata taagtcttcc aatggcatgc gttcattttc
     4921 ctgatgctct gtttgttctg tatctgggaa acatgcacca aaggccacac agtttggcat
     4981 agtacgagca aaggtagccc cacctgacga gattggctcg cttgttaaat ctcctgtctt
     5041 atcttgataa acagacatga gcgtagatac cagctggctg tctaatggca catacaagga
     5101 agcaaggtag tcgtactctt cataggtcaa gccacatgat tgcgctttgg cttgtaaagt
     5161 agaaactagg gcttctttat ccgcagtgac aggaatacga atgtccaagc gaatttctga
     5221 tttttttgcg ctaatggtta gacctgcaat attgaaactg agtgtccctg atggttcatc
     5281 ggtcacatca ccaaaaagct taaatcctgt ggcatcttca ccaactgcat tgacgataaa
     5341 gtccaaggct ggatgatttt cgaaatgttc caaagccttt gccaaacgaa cgatggcatt
     5401 gaccccctca gcagcatcct tggcgtgccg cgaaatacca agaaccgtta cttgatcatc
     5461 tttggtttca taatcaaagc ctaattgatc taattccgca ataactccgg ctaataaatg
     5521 accggaatag cttgccttgg caggtactac gttataggca gttcccgctt cgatactcag
     5581 acaagggtga cctggaccat gcaatttggc ctgtagtaat cctttttcag cataagtcaa
     5641 agggaaggaa gaatctggtg caaagcccat agttgctact tcttccaact gattgtagcg
     5701 gttcatacac cgccataagg tctcttcatc tgttccaaaa atgaaacgaa tccgtttgtt
     5761 aaattggact cccgcatcaa gaagtgcttt tactgcaaat aaggccgcca tcgaaggacc
     5821 tttatcatcc tgaaccccgc gtccaataat ataatctccc tctaccacag cctcaaaagg
     5881 cggcgtctgc cattgactaa gatcaccagc aggtaccaca tctaagtggc aaaggattgc
     5941 taataattct tccccttgcc caatttcagc atagccataa tagccagcag ggtctaaata
     6001 agttttaaaa cccatttttt ccgtcaaagc caacgtgtgc tccagaacat cctgaatcgc
     6061 ttgaccaaat ggcgtatctg cctgatgttc ttgcaaaaca gaaggaaaag caaccagttc
     6121 ttggatggct tgaatacatg cctcctgatg cgatgactga ataaaacttg ttctcattgt
     6181 gtcccctttc aacataataa gatatgatat attttctagc actattctat cataaaagga
     6241 aaaactgagc caaattttat ctgtattcat gataaaatct gacccagaat ttcgattaga
     6301 agaatgtcgc aatgaccaaa atagctatgg aggcaatcat gatgcctacg attaacttac
     6361 ctacaaattt ataccaagta ccaatttcaa cacgaccaag tgccaaggct cccattacaa
     6421 tacctgatgt tggagccacc aagttcaaga gacctgatgc agcttggaaa gctgtgataa
     6481 ccaagctcgc tggtacattt acaaactcac caagaggcgc catgataccc atagaagccc
     6541 ctgcaagacc tgatgaagat ggaatcaaga aggacattgg taggtagaag agatatgtca
     6601 aaatgatgaa tacttgcgaa gacaaacctt gcaatccttc ttcacccatg tggagaatag
     6661 tggcagtaat cataccatcg ttcatgatga cttgaatacc acgcgcgata gcacaaatca
     6721 aagctacgct gaaaatatca gccgcaccga acataaagga ttttaccaaa cgttcttcac
     6781 tcataccata aactaaacca actacaatcc ctgcgatacc aaagagcatt gctccttctg
     6841 ggaagtacca agtaccaaga gcagctgttg aagaaccaat cacttgaccg atgaatggaa
     6901 gaccaatcaa ccaatcatta aattgtgtaa agatagtcac acccaaatct tcccatggaa
     6961 taaagctaca aatcatgaga acaaatgtta atacaaatac ccagagaaca cgtttttgag
     7021 ctggtgataa ttctgcattc acttcttgag ttgctgttac attaaagtgt tgcatgtccg
     7081 cttcacgttg tttataaacc aaggacttag tcggatcatt tttcactttc tcagcatagt
     7141 tggctacaaa gagaaccccc atcgcgagaa tgacaacgaa gaagacaaag cgccaaatca
     7201 taccatccgc aacacttaca cctgctgcgt cagaagcaac aactgtcgca aatgggttta
     7261 cagtagaagc caaacagccg atttgagacc ctagcaagat gatggctaca ccagtaatac
     7321 tatcaaaacc aaccgccatc ataacaggaa caaggagtgg gaagaaagcc attgtttctt
     7381 cacccatacc ataggttgag cctcccaagg caaacaaagt catgagaatg taaatcaaca
     7441 ttttttcacg acctttgaag cgttttacaa tagaagcaat ccctacatca agtgcacctg
     7501 tttcgttaac tacaccaaga aaggcaccaa ccatgatgat gaagaatgct acgttaatcg
     7561 ctgcttcagt cgcaccatga ccaagcatgg cacgaactgg agccataaaa acatcgtaaa
     7621 tcccttgtgg attttgagca accttctcat aggtaccagc caccaaatgt ccggcttcat
     7681 caacctgata ctgaccagct ggaataatcc atgtcatcac tgccataaag gcaataatga
     7741 gcatcaatat tgtataagac gaaggcaatt taaagccttt tttcactttt tcgctcatcg
     7801 caaaaacctc ctataatatt ttaaaagttt atcccctatt taagggaaat tgtatccgta
     7861 ataaccgtat caaatatcca cctatcttca agagatgtct atctcttcag tctattatct
     7921 gaaatcattg cttatagata gatacttgat aggaaatgga tgagagggga gggagcttag
     7981 aagcccagac cttcatgttt cgattaaagg gaacccttgt aggactatca acacttccac
     8041 tcccctaact ccatcaataa ataacccgtc tagtttaaaa actatatttg catgcagagt
     8101 acatcaataa atagaagcct caacaataca tacagctact tagcctttga caatgatagt
     8161 accgctatcg gattcaatca aagcgcctaa gttttctaat gaggtaatga ctgcttttga
     8221 ttgcggctta ttgtttacaa aagcaatagc tgcttcaact ttcggtagca tggaacctgg
     8281 tgcgaattga ttttgtttga tatattcttc caattcagct acggtaactg tttctaattt
     8341 ttcttggtct ggtttgttgt agttaacaaa gacatagtct acaccggtca agacgataaa
     8401 caagtctgcg tcaaccaatt ctgccaaaca ttgagaagca aagtccttat cgataactgc
     8461 ttccacaccg gtcagggtgc catctgcttc ttggacaact ggaatacctc cgcctccagc
     8521 agctacgaca acttcacctg cattgagaag ggtacgaatg gtaccaattt ctttgattcc
     8581 tacaggtttt ggcgaagcaa cgactttgcg ccagccacga ccggcatctt ctttgaaggt
     8641 tgcaccagtc ttttctgctt ctgctttcgc ttcttcttct gtatagaatg gtccaatcgg
     8701 cttggtcaaa ttttcgaagg cgggatcatt cttatctacg ataacctggg tcacaacaga
     8761 tgctacatct ttttcaatgc cttccttgtg caattcattt tccaaggcat tttgcaacca
     8821 gaaaccaatc gaaccttctg tcatggctac caaactgtct agtggaaagg ctggattctt
     8881 ttctgaatca gctgccaggt tttgaagaag taagtttcca acctgaggac cattaccatg
     8941 tgtgataata aggtcgtccc cattttttat caattttaca aggtgcttgg ctgtttgtac
     9001 caaggcctct ttttgtgctt tagccgatgg gtcggacgat aaaatggcat tgccacccaa
     9061 ggctactaca attttacgat ttgccatatc tcttgctttt tcctcacttt cgcgaaatag
     9121 taatcgctta cacatctatc ctcaaaataa gggggctggg tgccagcccc cggaggttgc
     9181 gatgcgttat tagatagtta attattacac acgtggaaca aatggatccc ctaaagtagc
     9241 cgccatcact gctttaatag tgtgcatacg gttttcagct tggtcgaagt gacgagcata
     9301 tttgctacgg aatacttcgt ctgttacttc catttcttct acgccgaatt tttcagcgac
     9361 atctttacca taaacagtgt ttgtatcatg gaaggcaggc aagcagtgca agaagatgag
     9421 attttcattt tctgcttttt tcaccaattc catattcact tggtatggtt tcaagagggc
     9481 aacgcgttct gcaaatttat cttcttcacc cattgatacc caaacgtcag tataaagaac
     9541 atctgcacct ttgactgctt cgtcagcatt atcagtaatg agaacacgtg ctccactttc
     9601 tttcgcaaaa acttcagcca aggcaactac ttcttcttct gggaagagtt cttttggaga
     9661 gaagatatgg acattgacac caaggatagc acctgtcacc aagagagagt tggcaacgtt
     9721 gttacgacca tcaccacagt aaaccagagt caaaccttcc aacttgccaa agttttcttt
     9781 gacagtcaag tagtccgcca acatttgagt tgggtgccat gcatctgtca aaccattcca
     9841 tactggcaca ccagagaatt ctgccaattc ttccaccatt ttttgactga aaccacggaa
     9901 ttcaataccg tcgaacatac gccccaaaac tttagcagta tcttctgtag attctttctt
     9961 accaagttgg atatcatttg caccaagata ttctggatgg gcaccaaggt caatagatgc
    10021 tactgtgaag gcagcacgag tacgtgttga tgttttttca aacaagaggg caatattttt
    10081 accttccaaa taacggtgtg gaatattgcg ttttttcaaa tctttcaaat gagctgagaa
    10141 atcaatcaac cattccaatt ctgcgcgtgt gaaatctttc tctgcaagga aatgtctacc
    10201 tttaaatacg tttgtcattg tctcttctcc taatgtttaa ataaattttg tcaatgtctg
    10261 gcaccattct ccatcttctt gataaacttc agaagttgct tggtagccaa ctgactcata
    10321 aaaagtcttt gcagttaact ccgaatgtat attcaactga tgaaagcctg cttcacgtgc
    10381 ataagcttcc aaagagctga taatcatttt tccatagcct tttccacgaa aattcggtag
    10441 agtggctatt cgggttagac gagcttgacc aggaccgaca ggaagaaaac gtcccgtcga
    10501 aacaggctct tcaccaataa agagattggc gtaaactctt ccttccgtat cattctggtc
    10561 aaattcacct tcctttgcaa taccacgctc aaggacaaat accttatagc ggacatagat
    10621 agaggctgcg cgttgccatt cttccgaacc gattgttgtt cgttctatac ttggcattag
    10681 atgtcttccc gttcaaacgg cattgacata caacgaggtc caccacgacc gcgaaccaat
    10741 tcgcttccgc caatcttaat caaacgaagc cctttggact cgaggatagc attggtaatc
    10801 gtattgcgtt tgtaaacaac taccacacct ggtgcaatag tcaatgtatt tgaaccatca
    10861 ttccattgct cacgaccagc agcaaccata tcaccgccac cacaacggat caattctact
    10921 ttttcaagac caaggttcac agccaaaagt tctgccaagt caccatgttc ttcttcaata
    10981 tgaagcgtat cattttcata ggttacagag aagacacgaa ggtcaccttc aatttctggg
    11041 tggatagtaa acttatcata gtcaaccatg gtaaataccg tatccaagtg catgaattta
    11101 cggttgttag caaattcgaa tgccaatact ttcttgaagc caacatgctg ttcaaagata
    11161 tttaccaata gtttttcaat tgatgcggca tcggtacgtt gtgaaatacc tactgccaaa
    11221 acatcttttg aaagaaccaa ttcatcacca ccctcgatac gagtagtttc ttcacgattg
    11281 taaaccaatg gaacttttcc accatattct gggtgatgag tgaagatgta tttaccatac
    11341 aaggtttcac ggttccgtgt ttctgaatac atgtggttaa gagaaacagc attaccaatc
    11401 gtagcaaatg gatcccgtgt gaagtaaagg tttggcattg ggtctattgc aaatgggtaa
    11461 gaggattcaa ccaaatctgt caaacctttt tcttcagcag ggatttctgg caattctgcc
    11521 ttttgaatac cggccatcgt tttctcaacc agttcttgat tatcttcaat agacaacaac
    11581 aacttgcgaa ttgccttctt agtcgcccga ccacgaatgt tagcttcttc gagatattca
    11641 tcaataaatt gttcacgaat ttcaggtgta acaagtgact cagcagctaa tttttccaag
    11701 tagagcactt cgacaccttc atcacgaaga gcttgagcaa aagcatcatg ctctttctgt
    11761 gcatcttcta agaatggaat atcatcgaag agtaggcgtt ctagatagtc aggcataagg
    11821 ttttcaattt ccttacctgg tctgtgtaac ataacttttt tcagcttacc aatttctgaa
    11881 aaaacatgaa ttggatggtt tgacatgatc tgtcctcctt gtagatttat acatgatggg
    11941 aaacgaggag gaccgtacgc tttcctgcct ctcatttcct ctttacatcc atagtttaac
    12001 agagtaaaaa aacaaaaact tgaaaacgct cacatttatt ttgagaaatt cttcacattt
    12061 ttaaccttat ttataaataa ttatcgatta tat
//
LOCUS       DASGCC010000064        11515 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.064, whole genome shotgun sequence.
ACCESSION   DASGCC010000064 DASGCC010000000
VERSION     DASGCC010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11515
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.064"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            106..432
                     /locus_tag="U1404_001201"
     CDS             106..432
                     /locus_tag="U1404_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5348162.1"
                     /translation="MHFPVPAVLTEFLIMAILESDDSYGYEICQTIKLIANIKESALY
                     PILKRLEQNDFLTTYSQEYQGRMRKYYSLTQLGHEELVRLKDDWDTYTNTINGIIEGS
                     VRHDKN"
     gene            419..1174
                     /locus_tag="U1404_001202"
     CDS             419..1174
                     /locus_tag="U1404_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM5348163.1"
                     /translation="MTRTEYMEQLEKYLKKLPHKEYFEAISFFNEYFDEAGPEHETEI
                     IEELGSPKEAASELINNMLNKQIQEEKDQQEPIQLNWKLWVGLGALSMTGLFSFFLLF
                     IMGEFIGVIPLFATLILGAFFLGRYFRNFSQTKRTLWLAILAVISLPIAIPLLLILLA
                     SLLGLVALILALIVGAFVLGVGLLTSGGYLIWEAFSLMSEGFNIFLMGFGSGLSLIGG
                     AILIYILTGFFAYWSWRLVKACFKWILKRGKRA"
     gene            1171..2229
                     /locus_tag="U1404_001203"
     CDS             1171..2229
                     /locus_tag="U1404_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5348164.1"
                     /translation="MKKKLTIAIIIGFVSLIAGLILAGIGFFTGGITRLEEVAAPTEV
                     HKTFTDLNTIKIDFIPHSVYIKESSDNNYHVTYANSDNNIQNPLKLSEKDGVLTLSAQ
                     ELKFAIEGIMQYLGERLAQRRINVFSVTIEVPKGKTLDKLEGEGLHFYEYGSFVIENV
                     HIKEIDLSGGVDLDKVTIDSGKITAGYFEAVNSALRNTSISANESSVNLIETSLENVT
                     IEGYSQLDSRQTTLLGDNRFTPSYTYSSTTFLDVTDKSLADSNLLITNQIDKKKLVEA
                     QGYYYEDGNDLGEMVNQDPYLKERLGEVGIFTSDKYTKFPVKTENDLQTLTLENKGSK
                     NKLTIEATNATINLGTPK"
     gene            complement(2279..4738)
                     /locus_tag="U1404_001204"
     CDS             complement(2279..4738)
                     /locus_tag="U1404_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM5348165.1"
                     /translation="MSEKVKNFFTRPMTLITIIGIACVPALYNISFLTSMWDPYGRLD
                     QLPVAVVNQDQSATFQDKTLTIGDDMVDNMKESKSLDFHFVSEKDAEKGLEEGDYYMV
                     ITLPEDLSEKASSLLTDQPEHLAIPYQTSKGHSFVASKMSESAMEKLKASVSETITET
                     YTSAVFDSMGEIQSGMVEAADGSQQLTDGASQLETGSQTLSLGLSTLSSSGQLLVTGA
                     NQLVTGVVSYTDGVNQAATGSQTLSSGLTTYTNGVASLASGAEQLNANSSQLIAGVGQ
                     LQSGASQVEQLVTGANQLQAGLEQLASSTSLSVEQSSQIQALLTRLPQLQAAINQLND
                     SLSSIGGLAVDTSTLSSLLTEMGAQAQGLLTAAQADKTASIEALQATATYQNLTADQQ
                     AELVGALQNSPSTTVTVAQTILGQLSQLSQALSSLQSLSGMATQMSQLQSAIGQINTA
                     ANQALPGATTAIENLSSGLSQVNTALNQQVLPGTQALTSGVSQLKTQLSNGASQLMSG
                     VTVYTAGVAQLAAGGAQLVANNSSIQSGDGQLTSGLATLASNSSQLVSGSGQLASGSQ
                     QLISGAEQLASGGQTLTSGISSLRTGSETLTNSLSSASQQLSVVSVEDKNAQAVSQPV
                     TLEHSDQDDVKTNGVGMAPYMVSVALMVAALSANVIFVKHIDNRSYKNRWDWAKGKLL
                     LNGIIASLAAVILYGVLRLIGIDPAHPMATLGLILLASWTFMALVTALVGWNNRFGSF
                     ASLILLLLQLGSSAGTYPIELSPRFFQVIQPYLPMTYSVSGLRQTISMVGNSSHQVWM
                     LSLFLVGFMGLGLLIYNQKDE"
     gene            4863..5396
                     /locus_tag="U1404_001205"
     CDS             4863..5396
                     /locus_tag="U1404_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEM5348166.1"
                     /translation="MGTDNRKERTRQAILEAMVTCLDTQGFNEITATHLAQTAGISRS
                     SFYTHYKDKYELIDSYQQGLFHTLEAIFDRYDGNRHSSFLEIFELLYREKLLSSLLTH
                     NGTQEIQNFLINKVRLLIANDLAERLGKEDLSPLEKEYRSIYFSHAFFGIMQVWIKNG
                     KQESPQYMTDFLIKMLP"
     gene            5481..6464
                     /locus_tag="U1404_001206"
     CDS             5481..6464
                     /locus_tag="U1404_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5348167.1"
                     /translation="MIQAEHLSKTYSIIDKEVGLKGSIKAFFKPKKKSIPAVQDISLQ
                     VGKGEIIGYIGSNGSGKSTTIKMLTGVLYPDQGQVRINGLNPQEHRKEVNKQIGVLFG
                     QKSHLDWNLPVQESFILHAKIYDVPDKVFKERLAVLIDLLDLDDIMKQPIRNLSLGQR
                     VRCEFAAIFIHQPAVVFLDEPTIGLDASVKETIRSFIRYMNQEYQTTFLITSHDMKDI
                     ESLCERIFIIDKGKKVYDGSLTVLKERFSTVKTILFSTEKPIEKDLQLDGWEFEQLDD
                     FHFEIHYQSKVWTSAQVIEQVFNHYAIEDVTMKELEIETMVRQIYEEGIHA"
     gene            6457..7236
                     /locus_tag="U1404_001207"
     CDS             6457..7236
                     /locus_tag="U1404_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM5348168.1"
                     /translation="MRKYLYMTRLTMMNAMQYKAFFLATFVSLAVKILVALYVWKTIF
                     FTQSEVNGFTLQTFTTYIIFANLLASLNSFSLGEDLSYSILKGSIAGEFLRPYSFILA
                     LFFKDLGNKLLELIKFAIVFIGIILVHQDFYLPDGKTILLFLVSSILGMFIVQLLDMA
                     FGFLAFFTVNAWGVMLLRMGLFNLASGALLPLSFYPQAVENFLKLLPYNYAVNVPVSI
                     LLGQESDLTALGLQVIWIPILACFIALLWSQAKRRIVIFGG"
     gene            7238..8020
                     /locus_tag="U1404_001208"
     CDS             7238..8020
                     /locus_tag="U1404_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM5348169.1"
                     /translation="MKKYISLYLYNIKVYMMAQMSFRVDFFIGLFSSLIEQIVYLIFL
                     NILFGNIKEIAGFNYGQMLFIYGIATVGRSIHLIFFDNLWMFGSRYIRQGEFERLLLM
                     PVNPLFQLICERIQPQGIGTTLIGTIALVQASNELGMEWSLGKLALLIFIAICIGLLY
                     AAIQLGPTALAFWIVESFPLTMGIFALNQMAQYPLNIYPKIIQILLIFVFPYAFTAYF
                     PALYFLDLSMWGLALPLVVLVLFTINYKLFRYGMTKFTSVGN"
     gene            complement(8070..8897)
                     /locus_tag="U1404_001209"
     CDS             complement(8070..8897)
                     /locus_tag="U1404_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5348170.1"
                     /translation="MTVRLIATDMDGTFLDSQGSFDRERFSRVLDQLDQKKIPFVIAS
                     GNGIGRLLQLCQGFEDRLIFVADNGAHVYQNGKTVIRRAIQQVEVEAILHFFKGRWAD
                     VCLMLSNDENIYMQAGAGMPFAGTDLPIEPAQMATFQNRVTYLDDLSAYPISEPIYKV
                     GLWVPEVRVESITEEFNQAFQGRLTAVTSGYGSIDILTEGIHKAWGLEQVLTSLDIEP
                     EQVMAFGDSDNDIELLSYVGHSYAMENATDKVKAVAKYRAPSHLEAGVLQVIEEYIL"
     gene            complement(8909..10141)
                     /locus_tag="U1404_001210"
     CDS             complement(8909..10141)
                     /locus_tag="U1404_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM5348171.1"
                     /translation="MEKRANYIRRKRYASYRTKMHLFFICGLATIILAIIIVSEHLVP
                     RLNQASESMHSDNSVRIMAHGDLLYHLPILRGAEQPDGSYDFSENFTYVKPWIEQADF
                     AIADFEGTISPDFELAGYPLFNAPAIVANNIHDAGYDLVDLAHNHILDSHLSGLISTV
                     NTFRDAGVDTVGVYAEGNCATAPLYIREVNGIRIAVLAYAYGFNGMEVLLSQEEYDAY
                     LSDFDKEKMRAEIERAEKEVDITIVMPQTGVEYQLEPTEEQTSLYHQMIDWGADIVLG
                     GHPHVVEPAEIIEKDGQRKLIIYSMGNFLSNQRIESMDDTPNSQWTERGVLMDIRIQK
                     ENGQTSIRTAQAHPTWVNRISQGTYSQDGYERFSYQTYVLEDWVAGGRYYGQLDLDTQ
                     ARVDTAYQEMKDFVNLVW"
     gene            complement(10474..11412)
                     /locus_tag="U1404_001211"
     CDS             complement(10474..11412)
                     /locus_tag="U1404_001211"
                     /EC_number="1.3.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate oxidase"
                     /protein_id="HEM5348172.1"
                     /translation="MVSTATTLGGFTFDNCLMNAAGVWCMTKEELDAVKNSKAGTFVT
                     KTATLDYRAGNPEPRYQNVPLGSINSMGLPNQGLAYYLDYLLELQETEPERTFVLSLV
                     GMSPDETHEILRTVEASDFKGLIELNLSCPNVPGKPQIAYDFETTETILQEVFTYFTK
                     PLGIKLPPYFDIVHFDQAAAIFNQFPLKFVNCVNSIGNGLYIKDESVVIKPKNGFGGI
                     GGEYIKPTALANVHAFYQRLKPEIQIVGTGGVLTGRDAFEHILCGASMVQVGTTLQKE
                     GVAAFERITAELQAIMAEKGYETIEDFRGKLQHLDD"
BASE COUNT         3291 a         2632 c         2233 g         3359 t
ORIGIN      
        1 tatttctgta ggtgtatatt taatatataa caaaatttga tatatacaaa cgaacattat
       61 atatcaaaac cgaacctaac taacaacaaa ggaaaggagc gtcctatgca ttttccagtc
      121 cccgcagtgc tgacagaatt tctcatcatg gctattttgg aatccgatga ttcttatggc
      181 tatgaaatct gtcagaccat taaattaatt gccaatatca aggagtccgc cctctatccc
      241 atcctaaaac gattggagca aaatgacttt ttgactactt attcccaaga atatcagggt
      301 cgtatgcgca agtattatag cctaactcag ttaggtcacg aagaattggt ccgactcaaa
      361 gatgactggg atacctatac aaacacgata aacggcatca tagaagggag cgtccgccat
      421 gacaagaact gaatacatgg agcagttaga aaaatatctc aaaaaactgc cccacaaaga
      481 atactttgaa gccatcagct tctttaatga gtattttgac gaggctggac cagagcatga
      541 aacagaaatt atagaagaac ttggttcacc aaaagaagct gccagcgaac tcattaacaa
      601 catgctcaac aagcaaatcc aggaggagaa agatcaacaa gaacctattc aactcaactg
      661 gaaactctgg gttggtctgg gagccttaag tatgacaggt ctcttctctt tcttcctact
      721 ctttatcatg ggagagttta tcggagtcat tcctctgttt gcgactctta tcctcggcgc
      781 ctttttcctc ggtcgctact tccgtaattt tagccaaaca aaacgaacgc tctggttggc
      841 tatcctagct gtcatttccc tgcctatcgc tattccactt ttgctcattc tcctagctag
      901 tctattggga ttggtggcgc tcatcttggc cctcattgtc ggtgcctttg ttttgggtgt
      961 cggacttctc accagcggtg gctatctgat ttgggaagcc tttagcctta tgtcagaagg
     1021 attcaatatc ttcctcatgg ggtttggctc aggtttgtct ttgattggcg gagctattct
     1081 catctacatc ttgactggat tttttgccta ctggtcttgg cgactggtca aggcttgctt
     1141 caaatggatc ttgaaacgag gtaaacgagc atgaaaaaga aacttaccat cgccattatt
     1201 atcggctttg tcagcctgat tgcaggctta attctagctg gcattggatt tttcactggg
     1261 ggcataaccc gcttagaaga ggttgctgct ccgacggaag tccataagac cttcacagat
     1321 ttgaatacca ttaaaattga ttttatcccc cacagcgtct acatcaaaga gtctagtgat
     1381 aacaactatc atgtgaccta tgccaactcc gacaacaata tccaaaaccc tctaaaactc
     1441 agtgagaaag acggcgtctt aaccctctct gcacaggaac taaaatttgc cattgaggga
     1501 atcatgcagt atctgggaga aaggttggcc caacgtcgca tcaatgtctt ctcagtcacc
     1561 attgaagtgc ctaaagggaa gacactggat aaattagagg gagagggtct ccacttctat
     1621 gagtatggta gtttcgtgat tgaaaatgtc catatcaaag aaattgacct ttcaggtggt
     1681 gtcgatcttg acaaggtgac tattgacagc ggtaaaatca cagctggtta ctttgaagct
     1741 gtgaattctg cactcagaaa tacctctata tctgcaaatg aatcttcagt caatttaatc
     1801 gaaaccagtt tggaaaatgt gaccatcgag ggctatagcc agctggatag cagacaaacg
     1861 actcttcttg gcgataatcg tttcactcca tcctacacct actcctctac gacatttttg
     1921 gatgtgacgg acaagagtct ggcagatagc aacttgctca tcaccaacca gatcgacaag
     1981 aaaaaattag tagaagccca aggttactac tatgaagatg ggaatgattt gggagagatg
     2041 gttaaccaag acccttactt aaaagagcga ctaggggaag tcggtatttt cactagcgat
     2101 aagtacacca aattccctgt caagacagaa aacgatctac agaccctaac cctagaaaac
     2161 aaaggtagca agaacaaact gaccattgaa gccaccaatg cgacaatcaa tttagggacc
     2221 ccaaaataat tacatcaacc aaaaaccaac tgttcacatg gagcagttgg ttttattctt
     2281 attcatcttt ttgattataa atcaagagac ctagtcccat aaagcctact aagaagagac
     2341 ttagcatcca aacttgatga ctactatttc caaccataga aatggtttga cgaagacctg
     2401 aaacagaata ggtcattgga agatagggct gaatgacttg gaagaagcgt gggctgagtt
     2461 caattgggta ggtccctgcg cttgagccaa gctgtagtaa caagagaatt aagctggcaa
     2521 aggatccgaa acgattgttc caacccacca gggctgtaac gagggccatg aaggtccaag
     2581 aagctaagag gattaatccc aaggttgcca ttggatgagc cggatcgatt ccaatcaagc
     2641 gaagaacacc gtacaaaatc actgctgcta gactggcaat aataccattg agcaagagtt
     2701 ttcctttggc ccagtcccaa cgattcttgt aggagcgatt atcaatgtgt ttgacaaaaa
     2761 taacattcgc tgataaggct gcaaccatta gggcaacaga caccatgtaa ggagccatgc
     2821 cgacaccgtt ggtcttcaca tcatcttggt cactgtgttc caaggtgact ggttgagaaa
     2881 ccgcttgtgc atttttgtct tctacagaga cgactgatag ttgttgactg gctgagctga
     2941 gtgaattcgt tagggtttca ctacctgtac gaagactgga aataccactt gtcaaggttt
     3001 gaccgccact agccaactgt tctgcaccag aaatcaattg ctgactacca gaagccagtt
     3061 gtcctgaacc actgacaagt tgactggagt tggatgctaa ggttgccaat cctgatgtta
     3121 actggccatc tcctgattga atactactat tattcgcaac caactgggct ccacctgcgg
     3181 ctaattgagc aacacctgcg gtgtagactg ttactcctga catgagctga cttgctccat
     3241 ttgataattg cgttttaagt tgactcacac cactcgtcaa ggcttgagtt cctggtagaa
     3301 cttgctggtt caaggcggta ttgacctgac tcaaaccact tgataggttt tcaatggctg
     3361 ttgtggcgcc tggcaatgct tgattggcag ccgtgttgat ctgaccgata gctgattgta
     3421 gctggctcat ttgtgttgcc atgccagaaa gactttgtaa gcttgataag gcttgactga
     3481 gttgcgacaa ttgacccaga atcgtttggg ctactgtcac tgttgtcgaa ggtgaatttt
     3541 gaagggcacc aaccaattca gcttgctgat cagctgtcaa gttttgatag gtagctgttg
     3601 cttgcaaggc ttcaatgctg gctgttttat cagcttgggc tgctgtcaac aatccttggg
     3661 cctgagcccc catctccgtc aagaggctag atagagtaga ggtatcgact gcaagtcctc
     3721 cgatacttga taggctgtca tttaattggt tgatggccgc ttgcaactga ggaagccttg
     3781 tcaagagtgc ttgtatctga ctagactgtt caacagacaa actagttgaa ctagcgagtt
     3841 gttccaagcc tgcctgcaat tgattggctc ccgttacaag ttgttcaacc tgacttgctc
     3901 ctgattgcaa ttgtcccact ccagcgatga gctgagagga attggcattt aattgctccg
     3961 cacctgaagc aagactcgct accccatttg tgtaggtggt taagccactg gacagtgttt
     4021 gactgcctgt tgcagcctga ttgactccat ctgtataaga cacaactcca gtaaccaatt
     4081 ggtttgctcc tgtcacgagt aattgtcctg atgatgataa ggtagatagg cctaatgata
     4141 gagtctgact tccggtttct aactgactag ctccatctgt caattgttga cttccatctg
     4201 ccgcctcaac cataccagat tgaatctctc ccatgctgtc aaaaacagcc gaggtgtatg
     4261 tttcagtaat cgtctcggaa acagatgctt tcaatttttc catagctgat tcactcatct
     4321 ttgaggcgac aaagctgtga cctttagatg tttgataggg aattgctaga tgctctggct
     4381 ggtccgttaa gagactagaa gctttttctg acaaatcttc tggtagggta atgaccatat
     4441 aatagtcccc ttcttccaaa cctttttctg catctttttc tgatacaaag tggaaatcca
     4501 gactcttgct ttccttcata ttatccacca tatcatcacc aatggttaag gttttatctt
     4561 gaaaggttgc agactgatct tggtttacaa ctgctacagg tagctgatcc aatcgtccat
     4621 aaggatccca catagaggtt aggaaactaa tattgtataa ggccgggaca caagctatac
     4681 caataatggt aatcaaggtc attggtctag tgaaaaaatt ttttactttt tctgacataa
     4741 aaactccttt agacatcctg tccaaaaact gataaaatac attatacaag tatcattttc
     4801 aaaatcaagt aggaagaatc gtttttagac aatgtgtcta aaaatgttca aaaggagaga
     4861 atatgggaac agataatcga aaagaacgaa ctcgtcaggc gatattagaa gcaatggtga
     4921 catgccttga cacccaggga tttaatgaga ttacagccac tcaccttgca caaactgctg
     4981 gtattagtcg gtccagtttt tatacccact ataaggataa gtatgaatta attgactctt
     5041 atcaacaagg tctctttcat acattggagg ctatttttga tcgctacgat ggtaatcgtc
     5101 attcatcatt cttagaaatt tttgaactac tatatcgtga aaaattattg tcatccttat
     5161 tgacccataa cggaactcaa gaaatccaaa atttcctcat caacaaagtt agattattga
     5221 tcgcaaacga tttagctgag cgtttgggaa aagaagattt atcaccactt gaaaaagaat
     5281 atcggagtat ctacttttcc cacgccttct tcggtatcat gcaggtatgg attaaaaatg
     5341 gtaagcaaga atctcctcaa tatatgaccg attttctaat aaaaatgtta ccttaaaggt
     5401 gactttttac cgccactttc tggggaatat gttataatat tcttatctta cgcaaacgtt
     5461 ttcaaatagg agattatgat atgattcagg cagaacatct ttcaaaaacc tattcaatca
     5521 ttgataagga agtcggtcta aaaggctcta tcaaggcctt tttcaagcca aagaaaaagt
     5581 caatccctgc tgttcaagac atttccttac aggtaggaaa aggagaaatc atcggctata
     5641 tcggctccaa cggttctggt aaatccacca ccatcaaaat gctaactgga gtcctctatc
     5701 cagaccaagg acaggttcgt atcaacggac tcaatccgca agaacaccgt aaagaagtca
     5761 ataagcaaat cggcgttctc tttggacaaa aatctcactt ggattggaac ttacctgtcc
     5821 aggaatcttt tatccttcac gcaaaaattt atgatgttcc agataaggta ttcaaagagc
     5881 gattggctgt cttgattgat ctattggact tggatgatat tatgaagcaa ccaatccgta
     5941 atctgtcact cggccaacga gttcgctgtg aatttgcggc tatctttatc caccagcctg
     6001 ctgttgtctt tttggacgaa ccgaccatcg gcttggatgc cagcgtcaag gagaccattc
     6061 gctccttcat ccgctatatg aatcaagaat accagaccac ttttttgatt acttcccatg
     6121 atatgaagga catcgagagc ctctgtgagc ggatttttat cattgataag ggcaagaagg
     6181 tctacgatgg ttcactgacc gtcctcaagg aacgcttttc cacagttaaa accattctct
     6241 tctccacaga aaaaccaatt gaaaaagact tgcagttgga tggctgggag tttgagcagt
     6301 tggatgactt ccattttgaa atccattatc aaagcaaggt ttggaccagt gctcaggtga
     6361 ttgagcaagt tttcaatcat tatgccattg aagatgtcac catgaaggaa ttggaaattg
     6421 aaaccatggt ccgtcagatt tatgaggagg gtatccatgc gtaaatatct ctacatgacc
     6481 cgcctaacca tgatgaatgc tatgcagtat aaggctttct ttctggctac cttcgtttca
     6541 ctggcagtga agattttggt agctctctat gtctggaaaa ccattttctt cactcaatca
     6601 gaagtcaatg gctttaccct gcaaaccttt actacatata tcatctttgc taatctacta
     6661 gccagtttaa attctttctc actcggagaa gatttgtcct acagcatttt aaaaggaagc
     6721 attgctggag aatttctcag accctattcc tttatcctag ccctcttttt caaagacctt
     6781 ggaaataagc tcttggaact gataaaattt gctatcgtat ttatcggtat catacttgtt
     6841 catcaggatt tttatctacc tgacggaaaa actattttac tctttctagt tagctccatc
     6901 ctcgggatgt ttatcgttca attactggat atggcttttg gcttcttagc attttttacg
     6961 gtcaatgcct ggggagttat gctcctgcga atggggcttt tcaatctagc ctctggggcg
     7021 cttttgccac tcagcttcta tccacaggct gtggaaaact ttttgaaact ccttccctat
     7081 aattatgcgg ttaacgttcc agtttccatt ttattgggac aggaaagcga tctaactgct
     7141 ttgggattgc aagttatatg gatacccatt ctagcctgct tcatcgctct actctggtcc
     7201 caggccaagc gtcgtattgt catttttgga ggttaacatg aagaaatata tcagcctcta
     7261 tctatataac atcaaggtct acatgatggc ccagatgtcc tttcgagtgg acttcttcat
     7321 cgggcttttc tcctctttga ttgaacaaat tgtctacctg attttcctca acatcctctt
     7381 tggaaatatc aaggaaatcg ctggttttaa ctacggtcaa atgcttttca tctatggaat
     7441 agcgaccgtc ggacgctcca ttcacttgat tttctttgac aatctctgga tgtttggcag
     7501 tcgctacatc cgacaaggcg aatttgaacg cctcctcctc atgcctgtga acccactttt
     7561 tcaacttatc tgtgaacgaa ttcaacctca aggaatcgga acaactctca tcggtacgat
     7621 tgcactagtc caagcttcaa atgagctagg catggaatgg agtcttggaa aactagcctt
     7681 actaatcttt attgccattt gtatcggcct actctatgca gccattcaac tcggtccaac
     7741 cgctctagca ttttggattg tggaatcatt tcctttgact atgggaattt tcgccctcaa
     7801 tcagatggct caatacccac tcaatatcta tccaaaaatc attcaaatcc tgctgatatt
     7861 tgttttccct tatgctttta cagcctattt cccagccctc tacttcttag acctgtctat
     7921 gtggggactg gctctgccac tggttgtcct agtcttattt accatcaatt acaaactctt
     7981 ccgctatggt atgaccaaat tcaccagtgt tggaaattaa aaaaagctag tattctctgg
     8041 attgagagca ctagcttttt tctatatact tataaaatat attcttcaat gacctgaagc
     8101 acaccagctt ccaaatggct gggagctcgg tacttggcta ctgccttgac cttgtctgtc
     8161 gcattttcca tggcatagga atgcccaaca taggacaata actcaatatc attgtctgaa
     8221 tcaccgaagg ccattacctg ttcaggttcg atatctaaac tggtcaaaac ctgttccaag
     8281 ccccatgcct tatgaatccc ttctgtcaat atatcaatgg agccatagcc acttgtcact
     8341 gcagtaagac gaccttgaaa agcctggtta aactcttccg ttatcgactc cacacgcact
     8401 tcaggaaccc agagaccaac cttataaatc ggctcagaaa taggataggc actgaggtcg
     8461 tctaaatatg tcacacgatt ttggaaggta gccatctgag ctggttctat tggcaaatcc
     8521 gtccctgcaa acggcatacc tgccccagcc tgcatataaa tattttcatc gttcgacaac
     8581 ataagacata catccgccca acgtcctttg aaaaaatgca gtattgcttc gacttccact
     8641 tgctgaatag cccgacgaat tactgtcttg ccattttgat acacatgggc tccattatcc
     8701 gctacaaaga ttaatctgtc ttcaaatcct tggcataatt gtagtaatct cccaattcca
     8761 ttgccactag cgataacaaa aggaatcttt ttctgatcta gttgatccaa aacccgtgaa
     8821 aatcgctctc tatcaaaact cccctgacta tctaaaaagg tcccatccat gtctgttgca
     8881 attaatcgaa ctgtcatctt ctctctcctc accataccaa attgacaaag tctttcattt
     8941 cttgataggc tgtatccaca cgcgcctgtg tatctagatc caattgtcca tagtatcgac
     9001 caccagcgac ccagtcttcc aatacatagg tctgatagct aaaacgctca tatccatctt
     9061 gtgaatacgt tccctgagag atacgattca cccaggttgg atgcgcttgg gctgtccgaa
     9121 tacttgtctg cccattctct ttttgaatcc ttatatccat caagactccc cgctcggtcc
     9181 actgggaatt tggtgtatca tccatgctct caatacgctg attggacagg aaattcccca
     9241 tcgaatagat aatcaatttt ctctggccat ctttttcaat aatctctgcg ggctcgacta
     9301 catgcggatg cccaccaaga acgatgtctg ctccccaatc aatcatttga tggtacaaac
     9361 tggtctgttc ctccgtaggc tccaactggt attccacacc cgtctgaggc atgacgatgg
     9421 taatatctac ctctttctca gctcgctcaa tctctgcccg catcttttct ttatcaaaat
     9481 ccgataaata ggcatcatat tcctcctgac tcagcaaaac ctccatccca ttgaaaccgt
     9541 aagcataggc taggacagct atacggatac cattgacttc ccgaatgtag agtggtgcag
     9601 ttgcacaatt gccttcggcg tagacaccga ctgtatccac acctgcatct ctaaatgtat
     9661 tgacagtaga aataagccct gatagatgtg agtccaaaat atgattgtgg gctaagtcca
     9721 ccaaatcgta gcctgcgtca tggatattgt tggcgacaat ggcaggcgca ttaaaaagtg
     9781 ggtaacctgc taattcaaaa tcaggcgaaa tggtcccttc aaagtctgct atggcaaaat
     9841 cagcctgctc aatccaaggc ttcacatagg taaagttttc agaaaaatca taacttccat
     9901 ctggctgttc tgctcctcga agaattggta aatgatagag caaatcccca tgagccatga
     9961 tgcgaacaga attatctgag tgcattgatt ctgaggcctg attcagccta ggaactaggt
    10021 gctcgcttac aataataatc gccaagataa tagtcgctaa gccacaaata aaaaacaaat
    10081 gcatctttgt ccgataggac gcatatcgtt ttctgcgaat atagttcgcc cttttctcca
    10141 tacctttacc ctcatactcc ttaattaaga acctttgttc aaaatacagt cagtagtccc
    10201 tcaaaaaact atttcttcca taaaagtaca tcacttataa atagaggttc taatattagt
    10261 atacgacatt tttgctaaaa aatctaaata aaatcagaat tccatctcac aaatatatgt
    10321 ttccgactat gtattccatt cctcaaacga ttatcagacc gatcttcaca gaccatttaa
    10381 aaagaactaa catcatcccc tcgttactcc ctaaaagact atctgggaga acggtacaat
    10441 gttagcttct ttttacgtct tcaacagatg attttaatca tctaagtgct gtagcttgcc
    10501 acgaaaatct tcaatggtct cgtagccttt ttcagccatg atggcctgca attcagccgt
    10561 aatgcgttca aaggctgcca caccttcctt ttgcagggtt gttccaactt gaaccatgct
    10621 ggcaccacag agaatatgtt cgaaggcatc ccgacctgtc aagacgccac cagtcccaac
    10681 aatctgaatc tccggtttca agcgctggta aaaagcgtgg acattggcaa gagcagtcgg
    10741 cttgatatac tctccaccga taccaccaaa accattttta ggcttgatga caactgactc
    10801 atccttgata tagagaccat ttccaatcga attgacacag ttgacaaact tcaaaggaaa
    10861 ctggttgaaa atcgctgctg cttggtcaaa atgcacaata tcaaaataag ggggtaactt
    10921 aataccgagt ggtttggtaa agtaagtgaa gacctcctgc aagatggttt ctgtcgtttc
    10981 aaaatcatag gcaatctgcg gttttccagg gacattggga caagaaagat ttaactctat
    11041 cagcccctta aaatcactgg cttctacagt tctcaaaatc tcatgagtct catcaggcga
    11101 cattccaact aaagataaaa caaatgtgcg ttccggctcc gtttcctgca attctagtag
    11161 ataatccaaa tagtaagcca agccctgatt tggcaaaccc atcgaattga tagaaccaag
    11221 cggaacattc tgataacgtg gttctggatt acccgcgcgg tagtccaagg ttgctgtttt
    11281 tgttacaaaa gtacccgcct tcgagttctt aaccgcatct aattcttcct tggtcatgca
    11341 ccaaacccct gccgcattca tcaaacaatt atcaaaggta aatccaccga gtgtcgttgc
    11401 tgttgaaacc atattatcct ccatataggt cattctttct tgattatatc ataagaaaca
    11461 aacggatttt cttcatttac tactaaggtt cggattttgc aataaaaatt tatta
//
LOCUS       DASGCC010000065        11438 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.065, whole genome shotgun sequence.
ACCESSION   DASGCC010000065 DASGCC010000000
VERSION     DASGCC010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11438
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.065"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            44..859
                     /locus_tag="U1404_001212"
     CDS             44..859
                     /locus_tag="U1404_001212"
                     /EC_number="1.1.1.69"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 5-dehydrogenase"
                     /protein_id="HEM5348173.1"
                     /translation="MNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFN
                     DINQELVDRGMAAYRAAGINAHGYVCDVTDEAGIQAMVAQIESEVGIIDILVNNAGII
                     RRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETV
                     SAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQ
                     FIIAKTPAARWGEAEDLMGPAVFLASDASNFVNGHILYVDGGILAYIGKQPEA"
     gene            911..1552
                     /locus_tag="U1404_001213"
     CDS             911..1552
                     /locus_tag="U1404_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HEM5348174.1"
                     /translation="MKIALINENSQAAKNSLIFETLKSVTDAKGYHVFNYGMYGKEGE
                     SQLTYVQNGLLASILLVSKAADFVITGCGTGVGAMLAANSFPGVVCGFAVDPTDAYLF
                     SQINGGNALSLPFAKGFGWGAELNLKLLFERLFAEEMGGGYPRERVIPEQRNARILNE
                     MKAVTYKDLLTVLQEIDQDFLKETISGEHFQEYFFANCQDESIAAYLKTVLES"
     gene            1569..2570
                     /locus_tag="U1404_001214"
     CDS             1569..2570
                     /locus_tag="U1404_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEM5348175.1"
                     /translation="MKKVLLIGEPLIRITPTNYQELTDGVESRVFFGGSEINVACNLQ
                     GFGCETKLLTALPQGSLGDRFLDFLDGKGIDTSSVQRKGERVGVYYMEAGFGCRSSQV
                     YYDRGQSSLEAIQVEHFDMEQLFLEVGLVHFSGITVAIGSAVRAWLVQVLKEAKRRKI
                     PISMDLNWRSKMIGLRDAKKVFSQFATYADYCFGLEPIMANEKDWELFERDTATVHTI
                     RERMQTLKEAYKFQAIFHTIRQTDELGRNLYKAYGLADEFCCSQELKTQVLQRVGSGD
                     AFVAGALYKLLEGTSLKAVLDFAVASGTYKCSIEGDHMRQSLSKVESLLEGKNDIIR"
     gene            2581..3222
                     /locus_tag="U1404_001215"
     CDS             2581..3222
                     /locus_tag="U1404_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEM5348176.1"
                     /translation="MSPSQIISKLKEQGLVVVVRGDDKEVGFKTAQACIAGGITAIEV
                     AYTNPDANMIITELSRCHKDDVSVLIGAGTVLDSVTARQAIMAGASYIVSPSFNIEVA
                     KICHLYAVPYLPGCMTLTEITNALEAGCEMVKLFPGSVLGTNYITAIKGPLPHVSIMV
                     TGGVKLDNVSEWFNAGATVLGIGGEFNQLATKGEFGTIQELASSYASVRDKMK"
     gene            3508..3942
                     /locus_tag="U1404_001216"
     CDS             3508..3942
                     /locus_tag="U1404_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5348177.1"
                     /translation="MIKVIVVAHGQFASGILTSLKLIAGEVENIEAIDFSEGMSAQEL
                     KARIKSAILGEREVLILTDLLGGTPFKVSVELAAEQKEQNVVVLSGLNLAMILEANFS
                     RLTDDLEQLVGKLITTSKDGIVDSVSLLAEDNHDEELFEDGI"
     gene            3954..5144
                     /locus_tag="U1404_001217"
     CDS             3954..5144
                     /locus_tag="U1404_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEM5348178.1"
                     /translation="MIKDVLIESIAKKREFRNSTLLSKKEVEAAIELAIQQLVINCEY
                     FGESFPTPATFDNHYPKMDNTEWTNGFWTGELWLGHEYSLNNEMKALAKKNTTSFLER
                     VKQRIELDHHDLGFLYSPSTVADYKLTGSKEALEASLLAADKLMERYQEKGGFIQAWG
                     QLGKAEDYRLIIDCLLNLQLLFFAYEETGEQKYYDVALSHFYASVNTVIRDDASTFHT
                     YYFDPETGKPLKGVTRQGFSDDSSWARGQSWGIYGIPLAYRKIKDPACLNLFKGVTNY
                     FLNRLPEDNVSYWDLIFNDGSGHARDSSATAIAVCGIHEMLKYLPEVDEDKETYKYAM
                     HTMLRSLIDNYANRELAPGRPLLLHGVYSWHSGKGVNEGNTWGDYYYLEALLRFYKDW
                     ELYW"
     gene            5154..5645
                     /locus_tag="U1404_001218"
     CDS             5154..5645
                     /locus_tag="U1404_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HEM5348179.1"
                     /translation="MATPNIVMARIDERLIHGQGQLWVKSLGCNTVIVANDKVSEDKI
                     QQTLMKTVIPDSVAMRFFSLQKVIDVIHKANPAQTIFLVIKDLQDALTLVKGGVPITE
                     LNIGNIHNAPGKTQVTRSIFFGSEDKAIVRELNDVYKIRFNTKTTPSGNDGAVEVNIL
                     DYI"
     gene            5665..6441
                     /locus_tag="U1404_001219"
     CDS             5665..6441
                     /locus_tag="U1404_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000026606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5348180.1"
                     /translation="MTISLIQAALIGLWTAFCFSGLLLGLYTNRCIVLSFGVGIILGD
                     LPTALAMGAISELAYMGFGVGAGGTVPPNPIGPGIFGTLMAITSAGKVTPEAALALST
                     PIAVGIQFLQTSAYTLHAGAPESAIKHLRAGNLSKFKRVANGTVITFAFLGFALGFLG
                     AYSMDTLLKLVEMIPPVLLTGLSVAGKMLPAIGFAMILSVMAKKELIPFVLLGYVCAA
                     YLQLPVIGIAIVGSIFALKEFFNKPEQVAVKQEEAHDDWI"
     gene            6428..7243
                     /locus_tag="U1404_001220"
     CDS             6428..7243
                     /locus_tag="U1404_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5348181.1"
                     /translation="MTGSKLTKKDYLNTSLRAFFLQNGFNYSNYQGIGYANVMYPAFK
                     KHFGDDKEGLTKALEENCEFYNTNPHFLPFITSLHLVMLENDLPEEETRGIKMALMGP
                     LAGIGDSLSQFVLAPLLSTIAASLAGQGLVMGPILFFLGMNIILTSIKLLTGLYGYKF
                     GTSVIDKLSDQMATISKVANIIGVTVISGLAVTFVKISVPITFAAGELTEGADQKIVT
                     IQGMLDKIAPALLPALFTILVYYLIKNKKWTTYKLVILTVIIGILGSWLGILA"
     gene            7250..7558
                     /locus_tag="U1404_001221"
     CDS             7250..7558
                     /locus_tag="U1404_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM5348182.1"
                     /translation="MEQQTLYYVLIILVALSTILPVLTSYINRKRQQKALEEQLEKRQ
                     RYLSTLQAGDEVILFSGLHGKIIKLTDSLVELQIAEGVLVYVEKESIMGKAKELLFTK
                     "
     gene            7655..11149
                     /locus_tag="U1404_001222"
     CDS             7655..11149
                     /locus_tag="U1404_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5348183.1"
                     /translation="MGFFISQSKQHYGIRKYKVGVCSALIALSILGTRVAANQLPSTE
                     TASPQSSQLVETTPETTEAVMTSEVSSEVSPVTSTETQPSSTTAETLASPQAVQATKE
                     EKNLVANGEFISTTAPSGNWKELAATNWETWIPANVKKENGQVRIDEGRLHISSTASY
                     RVAVHQTVDVDPNKRYLFSYDVETKDLKGSGVRVRLRSLTAEGKDLSPQEFAYTPYKN
                     GSQAEHIEQILTVSPETRKLKVELFFENSVGQAWLDNISLVEYVEKTPETPEQSPELV
                     QPETGQISLASNKVYLPVRPDLTYRIADAAVATVEKNMIRPLAAGKTQVDVYDKDTKL
                     SSFELIVTEHQATVFDTLRNNWEDISLANKRYQSNDAQMKAFLGRLDAGVASSLEKWV
                     EPTEQSKTIFNDIDFSKSSHLTTVYRRLEQMAQVVENPDSAYYHDRSLIDLVRKGMNW
                     LYTNVYNENKSIDGNWWDYEIGTPRAVVNTLIYMHPYFSQEEILTYTKPISKFVPDPT
                     TIRKTLTNPVPAVGGNQTDLSKVAILEGALREDADRVRAGAQGLTTIMKFVDKGEGFY
                     RDGSFIDHTNVAYTGAYGNVLIEGFSQLLPVIQPTEFALKEEQTNILYEWIEKAFMPI
                     LVRGELMDMTRGRSISRATGESHVQAMEILRSLVRIAESAQPEQKTKLLSFVKAQLTS
                     DTFYDSYRSLKSYKDIDLVNKLLADNQIPAEVDKDYIAAFNNMDKFVYRSAQEGFTFA
                     LSMYSSRTQNYEDMNNENRKGWYTADGMVYLYNDDLSHYSNHYWATVDPYRLPGTTTT
                     KDKREDGSGEVTLASDFVGASQLGNRLATIAMDFNNWNNSLTARKAWIVLGNKIVFLG
                     TDIQHQSAQGAETTIENRKLLTGEKYSYYINGQPVDLSKEVVTDKTQSFYMTNGKDNQ
                     SIGYVFLNQLPTHAKLDQRTGKWSDINYNQSKEEVSNSFVSLWHEHAQTSSNYAYVLV
                     PNQSMEKVNQAAASVKLLHQDRDLQVVYDQEQNVWGVVKYTDTAYKLTDDITLTDAGL
                     YTIQKVEGGYRIAFYNPSTRTVKNGIELTKAGSSLTVEMEPTAAYPSTVWKVTMPEGS
                     DKQTGSVEKTEKEEKQLKENQPSSEVKQVVHHAAEKTKPSKPRLPQTGEEASLGLGFL
                     GLLTLGAVVDFKCRRSHS"
BASE COUNT         3464 a         2019 c         2669 g         3286 t
ORIGIN      
        1 tttgtaaacg ctttacaaat caaaatacaa aggagttacg aatatgaatc agcaattttc
       61 attggatcaa ttttctctaa agggaaaaat tgctttggta acaggggcgt cgtatgggat
      121 tggctttgcg attgcatcgg cctatgcaaa agcaggggcg acaattgttt ttaatgatat
      181 taatcaagag ttggttgata ggggaatggc agcctatagg gcagctggta ttaatgcgca
      241 tggctatgtt tgcgatgtaa ctgatgaagc tggaatacag gctatggttg ctcaaattga
      301 atcagaggtt ggaattattg atattctagt gaataatgct ggtattattc gtagagttcc
      361 aatgattgaa atgacagcgg ctcaatttcg ccaagttatt gatattgacc taaatgctcc
      421 gtttattgtt tctaaagcgg ttattccatc tatgattaaa aaggggcatg ggaagattat
      481 caatatttgt tccatgatga gtgagttagg acgagaaaca gtgtctgctt atgcagcggc
      541 taagggtggg cttaagatgt tgacgaagaa tattgcgtcg gaatacggtg aagccaatat
      601 acaatgtaac ggcattggtc ctgggtatat tgcaactcca caaacagctc cgttacgtga
      661 actccagaag gatggttctc gtcatccatt tgatcaattt attatcgcga agacccctgc
      721 agctcgttgg ggtgaagctg aggatttgat gggtccagca gtctttttag caagtgatgc
      781 tagtaatttt gtgaatgggc acattcttta tgttgatggg ggaattctag cttacattgg
      841 taaacagccg gaagcgtaat aaacgaatta acaaatttaa caaattttga tataagaagg
      901 gaaaaaaacg atgaaaattg cacttattaa tgaaaatagt caggctgcta aaaatagtct
      961 tatttttgaa acattgaagt cagtaacaga tgctaaaggg tatcatgttt ttaactatgg
     1021 aatgtatggt aaagagggag aaagtcagtt gacttatgta caaaatggtc tgttggcttc
     1081 aatccttcta gttagtaagg cagcggattt tgttattaca ggttgtggca cgggggtagg
     1141 tgccatgttg gcggctaata gttttccagg ggtagtttgt ggcttcgcgg tagatccgac
     1201 ggatgcatac ctcttttcac agataaatgg aggaaatgct ttgtctctgc catttgcaaa
     1261 gggattcggt tggggagctg aattaaatct caaattactt tttgagcgac tgtttgcaga
     1321 ggaaatgggg ggcggatatc cccgtgaacg cgttattccg gaacaacgaa atgctcgtat
     1381 tttgaatgaa atgaaagcag tcacctataa agacttactg acagtacttc aggaaattga
     1441 tcaagatttt ttgaaagaaa ctatttcagg tgaacatttc caagaatatt tctttgccaa
     1501 ctgtcaggac gagtcaattg cagcatattt aaaaacagta ttagaaagtt aaagagtggg
     1561 gggcggttat gaagaaggta ttactgattg gtgaaccttt aattcgcatt acaccaacaa
     1621 attatcaaga attgacagat ggtgtagaaa gtcgtgtgtt ttttggaggt tcagaaatca
     1681 atgtcgcttg taatcttcaa ggatttggat gtgaaaccaa gcttttgacc gcactaccac
     1741 aaggctctct aggtgataga tttttagatt tcttagatgg gaaagggatt gatacttcca
     1801 gtgttcaacg taagggggaa cgtgtggggg tatactacat ggaagcagga tttggttgcc
     1861 gttctagtca agtctactat gatcgtggcc agtctagttt ggaagctatt caagtcgaac
     1921 attttgatat ggaacaatta tttttagagg ttgggttggt tcactttagt ggtatcaccg
     1981 tggctattgg ttcagctgtt agggcatggc ttgttcaagt attaaaagaa gcaaagcgtc
     2041 gtaaaattcc gatttcgatg gatcttaatt ggcgttctaa gatgattgga ttaagagatg
     2101 caaaaaaagt gttctcgcaa tttgcgacct atgcagacta ttgttttggt ctggaaccta
     2161 ttatggctaa tgaaaaagat tgggaattat ttgaaagaga tacggctact gtccatacaa
     2221 taagagaacg gatgcaaact ttaaaggaag cctataagtt ccaagcaatt ttccatacga
     2281 ttaggcagac agatgaacta ggcagaaatt tgtataaggc ttacggattg gctgatgaat
     2341 tttgttgctc tcaagaattg aaaactcagg tgttacaacg tgttggcagt ggtgatgcgt
     2401 ttgttgctgg ggcattatat aaattgttag aggggacatc gttaaaggct gttttagatt
     2461 ttgcagttgc tagcgggact tataaatgca gcatagaagg ggatcacatg cggcaatctc
     2521 ttagcaaagt tgagtcttta ttagagggga aaaatgacat tatacgataa aggagaaaaa
     2581 atgagtccat cacaaattat ttcaaaattg aaggagcaag ggcttgttgt agtcgttaga
     2641 ggagatgaca aagaagtcgg atttaagacg gcacaggcct gtattgcagg aggaattaca
     2701 gctatagagg ttgcttatac aaatcctgac gcgaatatga ttattacaga acttagtcga
     2761 tgccataaag atgatgtttc tgttttaatt ggggctggaa cggttctaga ttctgtaacg
     2821 gcacggcaag ccattatggc aggagcaagt tatattgttt caccatcttt taatatagaa
     2881 gttgcaaaaa tctgtcatct ttatgcagtg ccatatcttc cgggctgtat gactttaacg
     2941 gagattacaa atgctttgga agcaggctgt gaaatggtta aactgtttcc tggtagtgtt
     3001 ttggggacaa actatattac tgcaatcaaa ggaccattac cgcatgtttc aatcatggta
     3061 accggtggag taaagcttga taatgtttca gaatggttta acgctggtgc aactgttctt
     3121 ggtattggtg gggaatttaa tcaattagct actaaaggag agttcggtac aattcaagaa
     3181 ttagcgtcct cttatgcaag tgttagagat aagatgaagt agtttatttc aaaataagga
     3241 ctgtattttt aacgttttca ctttctcctg cctccaacgg ggttgaatgt gggagaaagt
     3301 gagatgttac aggggaaatt ttgaacggaa acatggagat atttggtact cctgtttatg
     3361 aaaagaggga gctggagaat attttttaaa taaaagtcca acaaaatata aaacgcttac
     3421 attttttata aaatctattg acaagtggtt gtcaatagtc tacaatacaa agtgtaggta
     3481 aaccggtaaa gttaaaagga gagaattatg attaaagtga ttgtcgttgc tcatggacag
     3541 tttgctagtg ggattcttac ttcactaaag ttaattgcag gagaggtgga gaatattgag
     3601 gcaattgatt ttagtgaagg aatgtcggcg caagaactaa aagcacgcat caaatcagct
     3661 atattaggcg aaagagaagt tttgatttta actgatttac taggaggtac gccttttaaa
     3721 gttagtgtag aattagcagc agaacagaaa gagcagaatg ttgtcgttct ttcaggttta
     3781 aatcttgcga tgattttgga agcgaatttt tcacggttaa cagatgattt agaacaattg
     3841 gttggtaaat tgattaccac ctctaaagat ggaatcgttg attcggtcag tctgttagca
     3901 gaggataacc atgatgaaga gttatttgaa gatggtatat gagggagaaa tgcatgatta
     3961 aggatgtttt gattgagtca attgctaaaa aaagagagtt tagaaattcc actctattga
     4021 gtaagaaaga agttgaggct gcaatagaat tggcgattca acaacttgtt atcaattgtg
     4081 aatattttgg tgagtcgttc ccgactccgg ccacatttga taaccattat ccaaagatgg
     4141 ataatacaga gtggacaaat ggtttttgga cgggcgagct ttggttagga catgagtatt
     4201 ctttgaacaa tgaaatgaaa gcgttagcaa aaaagaatac gacatctttc ttggaacgtg
     4261 tcaaacaaag aattgaatta gatcatcatg atttgggatt tctgtattca ccatcaacgg
     4321 tagctgatta taaattgaca ggtagtaaag aggctttaga ggcttcgctc ttggctgctg
     4381 ataaattaat ggagcgctat caagaaaaag gaggttttat tcaggcctgg gggcaacttg
     4441 gtaaagcaga agattatcgg ttgattattg attgtttgct gaatttacaa ttacttttct
     4501 ttgcttatga ggagacaggt gagcagaaat attatgatgt agctcttagt catttctacg
     4561 cttctgttaa tacagttatt cgagatgatg cttcaacatt tcatacctat tactttgacc
     4621 ctgaaacagg aaaaccgctc aaaggggtta cccgacaagg atttagtgat gactcttcct
     4681 gggcgcgtgg tcaatcttgg ggtatttacg gtattccgtt agcttaccgt aaaattaaag
     4741 atcccgcatg tttaaatttg tttaaaggag taaccaacta ctttcttaat cgtttgccag
     4801 aggataacgt ttcctattgg gatttaattt ttaatgatgg tagtgggcac gctcgtgatt
     4861 cttctgcgac agcaatagcg gtttgtggta ttcacgagat gcttaaatat ttgccagaag
     4921 ttgatgagga caaggaaact tataaatatg ctatgcacac gatgctacgg tccttgattg
     4981 ataactatgc taatcgtgag ttagctccag gtcgtccatt gcttttacat ggggtctact
     5041 cttggcattc aggaaaaggt gtcaatgaag gaaatacttg gggcgattat tattacttag
     5101 aagctttgct tcgtttttat aaagattggg aattatattg gtaggaggtt aaaatggcaa
     5161 caccaaatat tgtaatggct cgtattgatg agcgactaat tcatggacag ggacaactat
     5221 gggttaaatc cttaggttgt aatactgtca tcgtggcaaa tgataaggtt agtgaagata
     5281 agattcagca gacattaatg aaaacggtta ttccagattc agtagctatg cgtttcttct
     5341 ctttgcagaa agtgattgat gtgattcata aggctaatcc tgctcaaact attttcttag
     5401 ttattaaaga tttgcaagat gcactaactt tggttaaagg gggagtacca atcacagaat
     5461 taaatattgg aaatattcat aatgcgcctg gaaaaacgca agtaacacgg tctatctttt
     5521 ttggttcaga agataaggct atagtgagag agttgaacga tgtttataag attcgcttca
     5581 acacaaagac aacgccttct ggtaatgatg gggcagttga agttaatata ttggattata
     5641 tttaaaaaaa taaggagaat tatcatgacg atcagtctaa ttcaagcagc tcttattggt
     5701 ctgtggacag ctttctgttt tagcggtcta ttattggggc tttacacaaa ccgatgtatc
     5761 gtgctttctt ttggggtcgg aatcatttta ggagatctac caacggcttt agctatgggc
     5821 gctatcagtg agctggcata catgggattt ggtgttggtg ctggggggac cgttcctcca
     5881 aatccaatcg gacctggtat ttttggtact ttgatggcta ttacaagtgc tggaaaagta
     5941 acaccagaag cagctttagc actttcaaca cctattgcgg taggtattca attcttacaa
     6001 acttcagcat atactttaca tgcgggtgct ccagaatcag ctatcaaaca tcttcgtgca
     6061 ggaaaccttt ctaaatttaa acgtgttgca aatggtacag tgattacttt cgccttttta
     6121 ggatttgctc ttggtttctt gggtgcctat tcaatggata ctcttttgaa attggttgaa
     6181 atgattccac cagtattatt aaccggattg agtgtagcag gtaagatgct tccagctatc
     6241 ggttttgcaa tgattttgtc tgtaatggct aagaaagaat tgatcccgtt tgtattgctt
     6301 ggctatgttt gtgcagctta tctacaactg cctgtaattg gtatcgcaat tgtcggtagt
     6361 atctttgcac ttaaagaatt ctttaataaa ccagaacaag tggcagtgaa acaggaggaa
     6421 gcacacgatg actggatcta aactaactaa aaaagattat ctcaacactt ctttacgggc
     6481 cttcttcttg cagaatggtt tcaattacag taattatcaa gggattggct atgcaaatgt
     6541 catgtatcca gcttttaaga agcattttgg tgacgacaaa gaaggattaa ctaaagcttt
     6601 agaagaaaac tgtgagtttt acaataccaa tccacatttt cttccattca ttactagtct
     6661 tcatttggtc atgttagaaa atgatctccc agaagaagag actcgtggga ttaagatggc
     6721 tctgatgggg ccgttggcag gaattggtga ctcactttca caatttgtat tagccccact
     6781 tttatctacg attgctgcct ctctagcagg tcaaggactg gttatgggac cgattctttt
     6841 cttccttgga atgaacatta tcttgacctc tatcaagttg ttgactggtt tgtatggcta
     6901 taaatttggt accagcgtga ttgataagtt gagtgaccaa atggcaacaa tttctaaggt
     6961 agccaatatc atcggtgtga cagttatctc tggtttagca gtaacctttg taaaaatttc
     7021 ggtgccaatc acctttgcgg cgggtgaatt aacagaagga gcagatcaga aaattgtaac
     7081 catccaggga atgttagaca agattgcccc tgcgttgctt ccagccttgt ttacgatttt
     7141 ggtttattat ctcatcaaga acaagaaatg gacaacctac aaactagtta tcctgacagt
     7201 tatcatcggt attttgggta gctggctggg catccttgca taagcgccta tggaacaaca
     7261 aactctctac tatgtactaa ttattttagt agctctatcg accatacttc ctgtactcac
     7321 ttcttatatc aatcgtaagc gacaacaaaa ggcacttgag gagcaactgg aaaaacgcca
     7381 acgctactta tcaaccttac aggctggaga tgaggttatc ctcttctctg ggctgcatgg
     7441 gaaaatcatc aaactaacag acagcttggt agaattgcag attgcagaag gtgttcttgt
     7501 ttacgttgaa aaagagtcga ttatgggaaa agccaaagaa ctacttttta cgaagtagtt
     7561 cttctttctt gcctccgcaa ggaagcggtt gcaggattaa aattataccc ctgggacatt
     7621 gttttgcccc gcataaaaag gaaaggaaac accaatggga ttttttatca gtcaaagcaa
     7681 gcagcattac ggcatccgga aatataaggt gggtgtctgc tccgccctta tcgcgctgtc
     7741 tatcttggga acaagggttg cagccaatca actgccaagt acagaaacag ctagtccaca
     7801 aagcagtcag ttagtggaaa caactccaga aacgacagaa gcagtaatga caagcgaggt
     7861 cagctctgag gttagtcctg ttacatcaac agaaacccag ccttcaagca ccactgcaga
     7921 aactcttgcc agtccgcaag ctgttcaggc gacaaaagaa gagaagaacc tagtagccaa
     7981 tggggagttc atcagtacaa cggcaccatc aggaaactgg aaagaattgg cagctacaaa
     8041 ctgggaaaca tggattcctg caaatgtgaa gaaagaaaac ggacaggttc gcattgatga
     8101 gggacggctg catatctctt caacagctag ctatcgagtg gcagtgcacc aaacagtgga
     8161 tgtagaccct aacaagcgct atctctttag ctatgatgta gaaaccaagg acctgaaggg
     8221 gagcggtgtt cgtgttcgct tgcgcagttt gactgcagaa ggcaaggact tgagtccaca
     8281 agaatttgcc tatacacctt ataaaaatgg aagtcaggcg gagcacatag agcagatctt
     8341 gacggtatct ccggaaactc gtaaattgaa ggtggaactg ttttttgaga atagtgtcgg
     8401 ccaagcctgg ctggataaca tctcgctggt cgaatacgta gaaaagacac cagaaacacc
     8461 agagcaaagc ccagaacttg tccaacctga aacagggcaa ataagtcttg ccagcaacaa
     8521 ggtctacctg cctgttcggc cagacctgac ctatcggatt gcggatgcgg ctgtggccac
     8581 agtagagaaa aatatgattc gtccgcttgc ggctggaaag actcaggtag atgtctatga
     8641 taaggacacc aagctatcta gtttcgagct gatagttaca gagcatcagg caacagtctt
     8701 tgatacctta aggaacaact gggaagatat ttctttagcc aataaacgct accaatctaa
     8761 cgatgctcag atgaaagcct ttctagggcg tttagatgcc ggtgtagctt cttctcttga
     8821 aaaatgggtt gaaccaacag agcagagcaa aacgattttc aacgatattg actttagtaa
     8881 atccagccat ctgacaacag tctatcgccg cttggagcag atggctcaag tagttgagaa
     8941 tccagactca gcctattacc acgaccgctc acttatcgat ttggtcagaa aaggaatgaa
     9001 ctggctttac accaatgttt ataatgaaaa taagtcaatt gatgggaatt ggtgggatta
     9061 tgaaattgga actccgcgtg cggttgtcaa caccttgatc tacatgcatc cctactttag
     9121 tcaggaggag attctaacct ataccaaacc gatttcaaaa tttgtaccag atccaaccac
     9181 tatccgtaaa acattgacca atccagtccc agcagttggc ggtaatcaaa cggatttgag
     9241 caaggtggcc atcttggaag gagctcttcg cgaagatgct gaccgtgtga gggctggtgc
     9301 gcaaggtttg acaacgatta tgaaatttgt agacaaggga gagggattct acagggatgg
     9361 ctcctttatc gaccacacca atgttgccta cacaggggcg tacggaaatg tcctcattga
     9421 aggtttttca cagttactac cagttattca gccaacggag tttgccctca aggaagaaca
     9481 gaccaacatt ctttatgaat ggattgaaaa agcctttatg ccaatattgg ttcgcggtga
     9541 actgatggat atgacccgcg gtcgttccat cagtcgggca actggtgaat cacatgttca
     9601 ggccatggag attttaaggt ctttggtccg cattgcagaa tcagctcagc ctgagcaaaa
     9661 aaccaaactt ctctcctttg ttaaggcaca gctgacctct gataccttct atgacagcta
     9721 ccgcagcctc aaatcctata aggatattga tttggtcaac aagcttttag ctgataatca
     9781 aatccctgct gaagtggata aagattatat tgcagccttc aacaatatgg ataagtttgt
     9841 ttatcgaagt gctcaagaag gctttacctt tgccttgtct atgtactctt ctagaactca
     9901 aaactatgaa gatatgaaca atgaaaaccg caagggttgg tatacagcag atggcatggt
     9961 ttacctctac aatgatgatt tgagtcatta cagtaaccac tactgggcaa cagttgaccc
    10021 gtatcgctta ccgggaacga caacgaccaa ggacaaacga gaagatggca gtggcgaggt
    10081 aactcttgca agtgactttg ttggagcaag ccagttaggc aaccgcttag cgacgattgc
    10141 aatggatttc aacaactgga acaatagtct gactgctcgt aaggcttgga ttgttctggg
    10201 aaataagatt gttttcctag gtactgatat acagcatcaa tctgctcaag gcgccgagac
    10261 aacgattgaa aaccgtaaac tcttgaccgg agaaaaatat agctattaca taaatggcca
    10321 gccagttgat ttgtccaaag aagtagtgac agataagact caatcctttt acatgaccaa
    10381 tggcaaggac aaccagtcca tcggttacgt cttcttgaac caactgccga cccatgccaa
    10441 attagaccag cgaactggca aatggagtga catcaactac aaccagtcga aagaagaagt
    10501 gagcaattcc tttgttagcc tatggcatga acatgcacag acttcaagta actatgctta
    10561 cgtccttgtt ccaaaccaat ctatggaaaa agtgaatcag gcagctgcta gtgtgaaatt
    10621 gcttcatcaa gacagggatt tgcaagtggt atacgaccaa gaacagaatg tctggggcgt
    10681 tgtgaaatac acggatacag cctacaagct gacagatgat attaccttaa cagatgccgg
    10741 tttgtatacc attcagaaag tcgaaggtgg ctatcgcatc gccttttaca atccgtctac
    10801 ccgaaccgta aagaatggca ttgagttgac aaaggcaggt tctagtctga ctgttgagat
    10861 ggagccgact gcggcttatc catccactgt ctggaaggtt actatgccag aaggttctga
    10921 taaacaaact ggaagtgtcg aaaaaacaga aaaagaagaa aaacaactca aggaaaacca
    10981 accaagttca gaggtgaaac aagtggttca tcatgctgcc gaaaaaacaa agccgagtaa
    11041 gccccgtctg ccccagacag gagaagaagc cagtctgggt cttggtttct taggtttgct
    11101 aaccttgggg gcagtggtgg atttcaagtg tcgcagatcg cactcctaaa tgaaattcgt
    11161 gggtgaaggg ggagcgggaa agaactcgac tagtcaaaaa agagttcgtc aacaagtctt
    11221 tatttctagt tgttgagctg aaacagtcta tccccagact gtttcactcc cacccccgca
    11281 tagttgatta aatcagattc ggagtatgaa atacgaattg ctgaaatttg ttttggaact
    11341 cctatctcca acctttaaca gtccactgaa ctgttaaagc caatcaatca ctgcgctaag
    11401 atgttgatat gaactttgag gagtggatct gggctttg
//
LOCUS       DASGCC010000066        11348 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.066, whole genome shotgun sequence.
ACCESSION   DASGCC010000066 DASGCC010000000
VERSION     DASGCC010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11348
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.066"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            50..1996
                     /locus_tag="U1404_001223"
     CDS             50..1996
                     /locus_tag="U1404_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS beta-glucoside transporter subunit IIBCA"
                     /protein_id="HEM5348184.1"
                     /translation="MDYKKVSAEVIEAVGKDNLVAAAHCATRLRLVLKDESKVNQKAL
                     DDNADVKGTFSTNGQYQVIIGPGDVNFVYAELIKATGLKEVSTDDLKQIAAQDKKFNP
                     LMDLIKLLSDIFVPIIPALVAGGLLMALRNFLTSPDLFGPKSIEEMYPAIQGISAMIQ
                     LMSAAPFMFLPVLVGISAAKRFGANQFLGAAIGMIMTTPDLGGKEAFWDIFGFQVAQT
                     NYAYQVIPVLAAVWLLATLEKFFHKKLPSAVDFTFTPLLSVMITGFLTFTVIGPVMLT
                     VSDAITNAIVWLYDTTGALGMSIFGGTYSLIVMTGLHQSFPAIETQLLSAYNNNGTGY
                     GDYIFVVASMANVAQGAATLAIYFLTKNAKTKGLSGSAAVSAFLGITEPALFGVNLKY
                     RFPFFCALAGSAIGALFAGLTHVIAVSLGAAGFIGFLSIKASSIPMYVVAEVIAFAAA
                     FAFTYVYGKTKASAVFADEAATAAAAAVTASVVETSEEVEETAEIFTAQETLVSPLSG
                     DVVALENVNDPVFSSGAMGKGLAVKPSEGVVYAPADAEVTIAFETGHAYGLKTASGAE
                     LLIHIGIDTVSMNGNGFEKLVAAGDKVKAGTPIAKFDATKIAEAGLDDTTMIIVTNTA
                     DFAEVSPLAEGTIAHGVEFLKVAK"
     gene            2124..3008
                     /locus_tag="U1404_001224"
     CDS             2124..3008
                     /locus_tag="U1404_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM5348185.1"
                     /translation="MTKLYGSLEAGGTKFVCAVGDENFQVVEKTQFPTTTPYETIERT
                     VEFFKRYEDRLAGIAIGSFGPIDIDQNSQTYGYITSTPKPHWSNIDLLGLIAKEFNIP
                     FYFTTDVNSSAFGETLVRKGVKSLVYYTIGTGIGAGAIQNGEFIGGLGHTEAGHTYVA
                     LHPYDVKHEFKGMCPFHNGCLEGLAAGPSLEGRTGIRGELIELNSDVWDVQAYYIAQA
                     AVQATLLYRPQVIVFGGGVMAQEHMLNRVREKFVGLMNDYLPTPDVKEYIVTPAVAEN
                     GSATLGNFALAKQVSRNS"
     gene            3622..6375
                     /locus_tag="U1404_001225"
     CDS             3622..6375
                     /locus_tag="U1404_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM5348186.1"
                     /translation="MIPIQQHGKRWLILTLTLSTSVLALASIGASQPVVFADENSHLQ
                     SQKNINKIEVLDWKTFSKKLSEYSSDQRQFHVLKLGFENRLGTLSTWDELEEFGKNNN
                     FLVINGKVTQNIHDFPHILVMNKGDVIAHNEEDYHNQMRELRFSGNGDLHNSMEPKRI
                     HALFKIELDSNKRQLLNAAGLGTAENSLKNINGMTIYSHGLTVDNKYYEDYSKYTHNS
                     VKNINVTKERFIANDDLIHKLIESSEAMKQSSERDKVKAFVQYVANHTTYDWEAANKA
                     VQNYADINYYLGSDLFAVTERQKAMCVGFSTTAARAFNMLGLPAYVVVGKNAEGVPHA
                     TARVYYDKKWHTIDGTGFITDITDSNKHQRSAKYSEKHFSTIGEDSYDVVEAGQEPKA
                     ERNYMIIDSNYESWAMKQKTADLLLFNKEKSLVGLDHIAYVEPTYITENKKNHLLDIY
                     KALKGKVEEAKATDTDDKDDKQEGYNRVLQFVNSDIDKLSTLSKITEEEFKALENSMD
                     LARVFLGQMNAKAGKEFSEGETYQSYLKNRQKNNTNSDDDRNRNELQENQANSDEVSQ
                     NSKDASAPSVNSAQHSEELEGTPSTQETISAAPSQQTPVAPKALQAKTELEDKTETSS
                     GSFERESNEVSANTVLSPEITKNTGSLASVESRVEEAVDRTTPSEKVSAESEEVEKTI
                     VSEVSLDASLANENKNSDAQEDTPRLEKSAEVVTTSQEVAEAPVSAPQVSSEIPTSPE
                     TNSTEAVTTSQEMAESRVSAPQVSFVSPTLEVPKNERLDEKADATMPNGVGANTHEAG
                     SVPTSDIYVQDAGSDTVPQPYSLSATLFEEAISTVEPVGVATSSQERSAVAGKVKVPA
                     SLERSNNSVEEEKVVDSNATIEKRATEKKEVLTSENVLNSLVTIWVALSTSFFMRYFS
                     RGK"
     gene            6695..9220
                     /gene="secA"
                     /locus_tag="U1404_001226"
     CDS             6695..9220
                     /gene="secA"
                     /locus_tag="U1404_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEM5348187.1"
                     /translation="MVTNVLRSLIENDKGELRKLEKMADKVFSYADEMEALTDEQLQA
                     KTAEFKERYNNGESLDDLLYEAYAVVREGARRVLGLYPYKVQVMGGIVLHNGDVPEMR
                     TGEGKTLTATMPVYLNALSGQGVHVVTVNEYLSTRDATEMGELYSWLGLSVGINLAAK
                     SPLEKREAYNCDITYSTNSEIGFDYLRDNMVVRAEDMVQRPLNYALVDEVDSILIDEA
                     RTPLIVSGAQGSETNQLYFLADNLVKSLTTEDYIIDIPSKTIGLSDSGIDKAEKFFKL
                     DNLYDIENVAITHFLDNALRANYIMTYDIDYLVNEDQEVMIIDPFTGRTMEGRRYSDG
                     LHQAIEAKEGVPVQNESKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVV
                     PIPTNRPIARVDHEDLLYPSLEYKFNAVIADVKRRYEKGQPVLVGTVAVETSDLISQK
                     LVAAGVPHEVLNAKNHYREAQIIMNAGQRGAVTIATNMAGRGTDIKLGPGVRELGGLC
                     VIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFGSERIKVFMERMNLT
                     EEESVIKSKMLTRQVESAQKRVEGNNYDSRKQVLQYDDVMREQREIIYRQRQDVITAD
                     RDLAPEIKAMMKRTIERQVAGHFLGSKDEAIDGIIKFAHANLVEDDTLSKATFEAMNQ
                     KEIVEELYERALRVYDSQVKKLRDEERVREFQKVLILRVVDNKWTDHIDALDQLRNAV
                     SLRGYAQNNPIVEYQSEAFTMFNDMIGAIEFEVTRLMMKAQIHDNIERERTSQEAHTT
                     AVKNIMPNQSHAIQENVSFEGVERNDPCPCQSGKKFKNCHGRK"
     gene            9335..9694
                     /locus_tag="U1404_001227"
     CDS             9335..9694
                     /locus_tag="U1404_001227"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEM5348188.1"
                     /translation="MIVGHGIDLQEMEAIESARIKHQGFPKKILTEKEFERYQSLSGR
                     RQLEYLAGRWSAKEALTKALGTGIGKIGFHDIEILNTSKGVPYVTKSPFDGNIWLSIS
                     HSGNFVQASVILEEKDD"
     gene            9687..10790
                     /locus_tag="U1404_001228"
     CDS             9687..10790
                     /locus_tag="U1404_001228"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEM5348189.1"
                     /translation="MIESEHRPTQIRVNLDAIAENFEQVMTNLPHKTEAFAVVKANAY
                     GHGAVAVAKKLSSQAAGFCVSNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNIS
                     VTVASLDWLQDAKDLEADLSGLTVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIE
                     GVYTHFATADEVDQAHFEYQLSIFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVR
                     LGNILYGLNPSGRVLELPFDVQPALSLVSEIVHVKQVETGTTIGYGATYHSADSEWIA
                     TVPIGYADGLVRSLQGLSVLVDGQACEIVGRISMDQITIRLPHAYPLGQKVTLIGQDG
                     DKTISVQEWADCIGTINYEVVCLLTDRIPRIFE"
BASE COUNT         3471 a         2042 c         2507 g         3328 t
ORIGIN      
        1 gaaagtttga aaacactttc aaaaatatac aaaaaggaga tttttgtaaa tggattataa
       61 aaaagtttct gccgaagtga tcgaagcggt tgggaaagat aatctagttg cggcagcaca
      121 ctgtgctact cgtcttcgtt tggttctgaa ggatgaatcc aaagtgaacc aaaaagccct
      181 cgatgataat gcagatgtca aagggacatt cagtacgaat ggtcagtatc aagttatcat
      241 cggacctggt gatgtaaact ttgtatatgc agagctcatc aaggctacag gcttaaaaga
      301 agtttcaaca gatgatttga aacagattgc agcgcaagat aagaagttca atccattgat
      361 ggacttgatc aagctcttgt cagatatctt tgtgccaatc attccggctc tcgttgctgg
      421 tggtctattg atggcgcttc gtaacttctt gacttcccca gatttatttg gtccaaaatc
      481 aattgaggaa atgtatcctg ctatccaagg catttctgcg atgattcaat tgatgtcagc
      541 agctccattc atgttcttgc cagtccttgt aggtatctcc gctgcgaaac gctttggtgc
      601 aaaccaattc ctcggtgcgg ctattggtat gatcatgacc actccagatt tgggtggtaa
      661 agaagctttt tgggatattt ttggtttcca agtagctcaa acaaactatg catatcaggt
      721 tattccggtt cttgcagcag tatggcttct tgcgacgctt gaaaaattct tccacaagaa
      781 gttgccatca gcagttgact ttacattcac accattattg tcagtaatga ttacaggttt
      841 cttgacattt acagtcatcg gtcctgtgat gttaaccgta tctgatgcga ttactaacgc
      901 aattgtttgg ttgtacgata caactggtgc gttgggtatg agtatctttg gtggtactta
      961 ctcattgatc gtaatgactg gtcttcacca atcattccca gccatcgaga cacaactttt
     1021 gtctgcttac aacaataatg gtacaggata cggagactac atctttgtag ttgcttcaat
     1081 ggctaacgtt gcacaaggtg ctgcaactct tgctatctat ttcttgacaa aaaatgcaaa
     1141 aacaaaaggt ttgtccggtt cagcagcagt ttctgccttc cttggaatta cagaaccggc
     1201 cctcttcggg gttaacttga agtacagatt cccattcttt tgtgctcttg caggttcggc
     1261 tatcggtgcc ctctttgcag gtttgactca tgttatcgct gtatctcttg gggcagcagg
     1321 tttcattgga ttcctctcaa tcaaagcatc ttctatccca atgtatgtag ttgctgaggt
     1381 gattgctttt gctgctgcct ttgcctttac ttacgtttat ggcaagacaa aagcatcagc
     1441 agttttcgct gatgaagcag caacagcagc tgcggcagca gtgacagcgt ctgtagttga
     1501 aacttcagaa gaagttgaag aaactgcaga aatctttact gcacaagaaa ctcttgtatc
     1561 tccactttca ggtgacgttg ttgcccttga aaatgttaat gacccagtct tctcatcagg
     1621 agctatgggt aaaggtttgg ctgttaaacc gtctgagggt gttgtttacg ctccagcaga
     1681 tgcagaagta acaattgctt ttgaaacagg ccatgcttac ggattgaaaa cagcgtctgg
     1741 tgctgaactt ttaattcaca tcggtattga tactgtatca atgaacggta atggatttga
     1801 aaaattggtg gcagcaggtg ataaagtaaa agctggtact ccgattgcta aatttgatgc
     1861 aactaagatt gcagaagcag gtcttgatga tacaaccatg atcatcgtga ccaacacagc
     1921 tgactttgca gaagtatctc cacttgcaga gggaacaatc gctcacggtg tagaattctt
     1981 gaaagtagct aagtaatctt atataaaatc gatttgtaga gtctgcctct actacataat
     2041 taacaggaaa aaggctttca gcctttttct tctgtttgct tatatgttat aataaaagtg
     2101 ataaaaattt tggagacaat caaatgacaa aattatatgg tagtttagaa gctggtggta
     2161 caaagtttgt ttgtgcagta ggtgatgaga actttcaagt tgttgaaaaa acgcaatttc
     2221 caacgacaac tccttatgaa acgattgaga gaacagttga attcttcaag cgctatgaag
     2281 atcgtttggc aggtattgcg ataggttctt tcggtccaat tgatattgat caaaactcac
     2341 agacttatgg ttacatcact tcgacaccaa aaccacactg gtcaaatatt gatttacttg
     2401 gtctgattgc taaggaattt aacattccat tctacttcac gacagatgtg aattcatcag
     2461 cttttggtga aaccctggtt cgtaaagggg taaagagctt ggtttactat acaatcggta
     2521 caggtattgg tgcaggtgct attcagaatg gtgagtttat cggtggcttg ggtcataccg
     2581 aagcgggtca tacttacgtt gccctacacc cttacgatgt aaaacatgaa tttaaaggga
     2641 tgtgtccatt ccacaatggg tgtttggaag gcttagctgc aggtccttct cttgaaggcc
     2701 gtacaggtat tcgtggtgaa ttaatcgagt taaattcaga cgtttgggat gtgcaggctt
     2761 actacattgc tcaagcagca gtacaggcaa ccttgcttta tcgtccgcaa gtcattgtat
     2821 ttggtggagg agttatggct caagagcaca tgcttaatcg tgtacgtgag aagtttgtcg
     2881 gtttgatgaa cgattatctc ccaacaccag atgtcaaaga atatatcgta acgccagctg
     2941 ttgctgaaaa tggttctgca actcttggga attttgcttt ggcaaaacag gtgtcaagaa
     3001 attcataatt gtttatgtga acagattcat ttgtactttg gcgatagata tattgaagaa
     3061 gaatattggg tgaagttgtt ttattatcac aataacttga cagtgaggtg agagttttta
     3121 tgtaactctc acctcttttt acctaaaaaa ctgtattcat aagagatagc cgtttgttaa
     3181 tcaaggcagt ctttgggagt aggaaagaat cagaccggct taaaaagagt tcgtcaacaa
     3241 ctctttaatt taagtttttg agccgaaaca gcgcctcaaa aaactaacga tgaccataaa
     3301 agattagagt ttgccattgt tggagttcat cgggtatgaa aaagagaaac gagttccaca
     3361 acttttgatg attattcata agcaaggttg aaaatctttt tattggcgat agtgtagtga
     3421 tattttttaa ccagaggaaa gttgttgttt ctcaattgta tgaaaacgct atatctaaag
     3481 taatgatgcg gagacactaa agtctataaa aacaggaaaa gcacagatag atagcagaaa
     3541 aaagatagtt aaaagtgtta caattgggat gcaaatttta ggctgggaaa ttattcttag
     3601 aagtatttat atggaggact tatgattcca attcaacagc atggtaagcg ctggcttatt
     3661 ttgacactta ccctttctac ttcagttctt gcgcttgcat ctatcggagc atcacaaccg
     3721 gttgtttttg cagatgaaaa ctcacattta caatcacaaa aaaacattaa taaaatagag
     3781 gttctggact ggaaaacatt ttctaaaaaa ttgagcgaat actcctcgga ccaacgacaa
     3841 tttcatgttt tgaaattggg atttgaaaat cgtcttggga cattatcaac ttgggatgaa
     3901 ttggaagaat ttggtaaaaa caacaatttt ttggtaatca atggtaaagt tactcaaaat
     3961 attcatgact ttccacatat ccttgttatg aacaagggtg atgttattgc tcataatgaa
     4021 gaagattatc ataatcagat gagagagttg aggttttcgg gaaatggcga cttacataat
     4081 agtatggagc caaaacggat tcatgcacta tttaagattg aacttgactc caataaacgg
     4141 cagttattaa atgctgcggg tctaggaact gctgagaata gtttgaaaaa tattaatgga
     4201 atgactattt actcgcatgg tcttacggtt gataataagt actatgagga ttatagtaaa
     4261 tatactcata attcagttaa aaatataaac gttaccaaag agcgttttat agcaaatgat
     4321 gacttgattc ataagttgat agagtcctca gaagctatga agcaatcaag tgaacgcgat
     4381 aaagttaagg catttgttca gtatgttgcc aatcatacaa catatgattg ggaagctgct
     4441 aataaggctg ttcaaaatta tgcagacatc aattactact taggatcaga tttgttcgcg
     4501 gttactgaac gtcagaaagc gatgtgtgta ggtttcagca ctactgcggc ccgtgcattt
     4561 aatatgttag ggcttcctgc ttatgttgtt gttgggaaaa atgcagaagg agtcccgcat
     4621 gctacagcgc gtgtttatta tgataaaaag tggcacacca ttgacggtac aggttttatt
     4681 acagatatta ctgattctaa taagcatcag cgctcagcta aatatagtga aaaacacttt
     4741 tctactatcg gtgaagatag ttatgatgtt gttgaggcag gacaggagcc taaggcggag
     4801 cgtaactaca tgattattga tagtaattat gagagttggg ctatgaaaca aaaaacagca
     4861 gacttactgt tgttcaacaa agaaaagtcc ttggttggtt tggatcatat tgcatatgtt
     4921 gagccaactt atataacaga aaataagaaa aatcatttgc tagacatcta taaagctttg
     4981 aaaggtaagg tagaagaagc gaaagcaacg gatacagatg ataaagatga taaacaagag
     5041 gggtataatc gtgttttaca atttgtcaat tctgatattg ataaattgag tactctctcc
     5101 aagattacgg aagaagaatt taaagcactc gaaaattcaa tggatttagc tcgagtgttc
     5161 ttggggcaaa tgaatgcgaa ggctggaaaa gaattttcgg aaggagaaac ttatcaaagt
     5221 tatctaaaga atcgtcagaa aaataacaca aattctgatg atgatagaaa ccgaaatgaa
     5281 ttgcaagaaa atcaagctaa ttctgatgaa gtcagccaaa attccaagga tgcttcagct
     5341 ccaagtgtta attctgcaca gcactctgag gagcttgaag gaactccttc aacacaggaa
     5401 acaatctcag ctgctccttc tcaacaaaca ccagtagctc ctaaggcact acaagctaaa
     5461 actgagttag aggataaaac agagacttca tctggttcct ttgagagaga atcgaatgaa
     5521 gtgtcggcta atacagtttt gtctcctgaa ataactaaga acacgggaag tctagcttct
     5581 gtagaatctc gagtggagga ggctgtggat aggacaactc catcagaaaa agtttctgct
     5641 gaatcagaag aagtagaaaa aacaattgta tctgaggtat cattggatgc ttcattagca
     5701 aatgagaaca aaaattctga tgctcaagaa gatactccac gtttggagaa atctgccgag
     5761 gtggtaacaa ctagtcaaga agtagctgaa gcaccggttt ctgctccaca agtaagttct
     5821 gaaatcccaa cttcaccgga aactaattct acagaggcag taacaactag tcaagaaatg
     5881 gctgaatcac gggtttctgc tccacaagtg agttttgtat cgcctacttt agaggttcct
     5941 aaaaatgagc gtttagacga gaaagcagat gcaactatgc caaatggagt tggagcaaat
     6001 actcatgagg caggttctgt tccgacatca gatatttatg ttcaagatgc tggttcagac
     6061 acggtgcctc aaccttactc tttatctgcg acattgtttg aagaagcaat ttcaacagtt
     6121 gagcctgtag gtgttgcaac ttcttctcaa gagagaagtg cagtagctgg caaggtgaaa
     6181 gtgcctgcct ctcttgaacg tagtaacaat tctgttgagg aggaaaaagt agttgattcg
     6241 aatgcaacaa ttgagaaacg agcgacagag aaaaaagagg tccttacttc ggaaaatgta
     6301 cttaatagct tagtaacaat ttgggtagct ttatctacta gtttcttcat gagatatttt
     6361 tctcgaggaa aataatatat taacacaggt tgaagataat atttatcttt gtgtagaaaa
     6421 ttattcatgt gagcttttat taaccgaata atatgacaac tgagctttta atgaatttct
     6481 aaatctccga tatatcgcag attcctcatt taaaatttta taaatttttc acctcctagg
     6541 agttattgtg actaggaggt gttttgtggt aaaaatagta atattaagct agcattttca
     6601 cttatttagg ctgtatccta gtgccaaacc ttgaaaattg cctagttttc tgctacaata
     6661 tattattgac taaaactgaa ataggatgaa tgatatggta acaaatgtac ttcgttctct
     6721 cattgaaaat gataagggag agctaagaaa acttgagaaa atggcagaca aggtcttctc
     6781 gtatgccgat gaaatggaag cgctgactga tgaacagttg caagctaaga cagcagaatt
     6841 taaggagcga tacaataacg gtgaatccct cgacgatctt ttgtacgaag cttatgcggt
     6901 agtccgtgaa ggagctcgtc gcgtattggg tctctatccc tacaaggttc aggttatggg
     6961 aggaatcgtt cttcacaacg gtgacgttcc ggaaatgcgt acaggtgaag gtaaaactct
     7021 gactgcaacg atgcctgttt atttgaatgc cttgtctggt caaggtgttc acgtagtgac
     7081 ggttaacgag tatctttcta ctcgtgatgc gactgaaatg ggtgaattgt attcgtggct
     7141 tggtctatca gttggtatca acttagctgc taaatcaccc ttggaaaaac gtgaggccta
     7201 taactgcgat attacttatt cgaccaactc agagattggt tttgactatc tccgagacaa
     7261 tatggttgtt cgcgcagaag acatggttca acgtcctctc aattatgcct tggtcgatga
     7321 agttgactca atcttgattg acgaagctcg tacgccgttg attgtatctg gtgcacaagg
     7381 ttcggaaaca aaccagttgt atttcttggc agataatctt gttaaatctt tgacaacaga
     7441 agattacatc attgacattc catctaaaac gattggtctg tctgattcag gtattgacaa
     7501 agcagagaaa ttcttcaagt tagataacct ctacgatatt gaaaatgtag ccattaccca
     7561 tttcttggat aatgcacttc gtgccaacta catcatgacc tatgatattg actatctggt
     7621 caatgaagac caagaggtca tgattatcga tccatttaca ggtcgtacga tggaaggtcg
     7681 tcgttattct gatggacttc accaagccat cgaagctaag gaaggtgtac cggttcaaaa
     7741 cgagtctaag acaagtgcct ctattaccta ccaaaacctt ttccgtatgt ataaaaaatt
     7801 atcagggatg acgggtactg gtaaaacaga agaggaagaa ttccgtgaaa tctacaacat
     7861 ccgtgtcgta ccaatcccaa ccaaccgccc aatcgcgcgt gttgaccacg aagatctact
     7921 ctatccaagt ctagaataca aatttaatgc cgttattgct gatgtgaaga gacgctatga
     7981 gaaagggcaa cctgtcttgg tcggtacagt tgcggttgaa acttctgatt tgatttctca
     8041 aaaattggta gctgcaggtg tccctcacga agtattaaat gcaaaaaacc actatcgtga
     8101 agcgcagatt attatgaatg ctggtcagcg tggtgcggtc actattgcga ccaacatggc
     8161 gggacgcggt accgatatta agttaggtcc aggtgtacgt gaacttggtg ggctgtgtgt
     8221 tattggtact gagcgccatg aaagtcgtcg tattgataac cagcttcgtg gacgttcagg
     8281 tcgtcaaggt gacccaggtg aatcacaatt ctatctatct ctcgaagatg acttgatgaa
     8341 acgctttggt tcagaacgca tcaaagtatt tatggagcgt atgaatctaa cagaagaaga
     8401 gtccgtcatc aagtctaaaa tgttgacacg tcaagttgaa tctgctcaga agcgtgtgga
     8461 agggaacaac tacgactcac gtaaacaagt ccttcaatat gacgatgtga tgcgtgagca
     8521 acgtgaaatc atctatcgcc aacgccagga tgttattact gctgaccgtg atttggctcc
     8581 tgaaatcaaa gcgatgatga aacggacgat tgaacgccaa gttgcgggtc acttccttgg
     8641 ttcgaaagat gaagctattg atggaattat caaatttgcg catgcaaatc tcgttgaaga
     8701 tgataccttg agtaaagcta cttttgaagc aatgaatcag aaagagattg tcgaagagct
     8761 ctatgaacgt gctttgagag tctatgattc gcaagtgaaa aaattacgcg atgaagaacg
     8821 tgtacgcgaa ttccagaaag ttcttatcct tcgtgttgtg gataacaaat ggacagacca
     8881 tattgatgcc ttggatcaat tgcgcaatgc agtcagtctt cgtggatacg ctcaaaacaa
     8941 tccaatcgtt gaatatcaat cagaagcatt tactatgttc aacgatatga ttggggctat
     9001 cgagtttgaa gtaacccgct tgatgatgaa ggcgcaaatt catgacaata ttgagcgtga
     9061 gcgtacaagt caagaagcac atacgacagc tgttaagaat attatgccga accaatcgca
     9121 tgcaattcag gagaatgtat cttttgaagg tgttgaacgt aacgatccat gcccatgcca
     9181 gtctggtaag aaatttaaaa attgtcacgg ccgtaaatag gaatgacgca tggactggac
     9241 ggctgtccag tccttttgca atttttagac aagttactag agtcagttcg tttattttaa
     9301 taaatgaaat gactatgcaa aaggagaccg attaatgata gtaggacatg gcattgacct
     9361 tcaggagatg gaggcgattg aaagtgccag aatcaaacac caagggtttc ccaaaaagat
     9421 tctcacagag aaggaatttg aacggtatca aagtctgtcc ggtcgccgtc agctagaata
     9481 tttagctgga cgttggtcag ccaaagaagc gctgaccaag gccttgggga caggtattgg
     9541 taagatagga tttcatgata ttgaaattct gaataccagc aaaggagttc cctatgtgac
     9601 gaagagtccc tttgatggga atatttggct cagcattagc cattcaggaa attttgtaca
     9661 agctagtgtg attttggagg agaaagatga ttgaaagtga acatcgaccc acgcaaattc
     9721 gggttaactt agatgcgatt gcggaaaatt tcgagcaagt aatgaccaac ttgccccata
     9781 agaccgaagc atttgcagtt gttaaggcga atgcttatgg tcatggagct gttgcggtag
     9841 cgaaaaagtt atccagtcaa gcagctggtt tttgtgtttc gaatttggat gaagcattag
     9901 agttacgtaa agcgggtatc gagcatccta tcttgatttt aggagtggtt cctgtacgtt
     9961 ttttaccagt agctcatcaa ctcaatatca gtgtgacagt tgctagtctg gactggttgc
    10021 aagatgcaaa agacttagag gctgatttat ctggtctaac tgtccatctt aagctagata
    10081 caggtatggg gcggattggt tttagaaaaa tagccgattt gctacaagcg attgctatcc
    10141 ttgaagaatt agagtatgac atcgaaggag tttatactca ttttgctact gcggatgagg
    10201 ttgatcaggc gcacttcgag tatcaactgt ctatttttaa agaatttttg gatgttctac
    10261 caattactcc gcgctggatt catgccagca attcagcaac aagcatttgg catgctgata
    10321 cagtatttaa cctggttcgt ttgggaaaca ttctttatgg acttaatcca agtggacgag
    10381 tactagaact cccgtttgat gttcaaccag ccttatctct cgtatctgaa attgttcatg
    10441 taaagcaggt tgaaactggc acaacaattg gctacggagc tacttatcac agcgccgatt
    10501 cagaatggat tgcgaccgtt ccgataggat atgcagatgg tctcgtacga agcttacaag
    10561 gcttatcagt cctagtcgat gggcaggcct gtgaaattgt agggcgtatt tcgatggacc
    10621 agatcaccat tcgcttacct catgcttatc cacttggtca aaaagtcact ctaatcggtc
    10681 aagatggaga taaaacgatc tctgttcagg agtgggctga ttgcatcgga accataaatt
    10741 acgaggtggt ttgtcttttg acagatcgca tacctcgaat ttttgagtaa acgtgacgat
    10801 aatccgcctc tttcactagg atagaaggct aaaatattag agaggtattg cctagagatt
    10861 gtctataata caaatagcgt catttagttg acttttatta cttcgacaat cgaggaaata
    10921 tcgtttccat atttccaact tcaaacactc cactggattg tttgaactcg ccttgcctga
    10981 ttttgtaaaa gtgacttgct ttgcaagcaa tctgggggat acgaatagtc cagcggacta
    11041 ttcgtacctg agcctgaaaa caaaaaagcg aagtgcatca gctggtcacc tagaaataag
    11101 aaagcattga gttatgcctg cggcttttga tgtgaacatc gttcactttg tccccagtct
    11161 ccaactatct cccatatagt tggagcgagt gctaaaagta aactaaaaga ctataatgag
    11221 tctggtcaaa aagtctaata ctcttcgaaa atcaaaatta tccgttgtca acttgccttg
    11281 atgaacttca gttctatctt cgacttcgtt tcctaggcta cttttgattt tcattgagta
    11341 taaaaaat
//
LOCUS       DASGCC010000067        11093 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.067, whole genome shotgun sequence.
ACCESSION   DASGCC010000067 DASGCC010000000
VERSION     DASGCC010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11093
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.067"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            220..1044
                     /locus_tag="U1404_001229"
     CDS             220..1044
                     /locus_tag="U1404_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348190.1"
                     /translation="MITVQHIHKQFGDKVALDNISFDIQEGQIFGFLGPSGSGKTTMI
                     KIITGQLPADSGKSYLLGKESTLLSPEDFEAMGLVSDSSGFFEKMTLENNLLFYAKFF
                     DVSPKEVEVILQKVGLLDSKKTIAEKLSTGMKQRMLLARALINSPKVLFLDEPTSGLD
                     PTTSKRIHELLLELKGKGTTIFLTTHDMAEATFLCDQLVLLNQGNLVEKGSPQDLIHK
                     YNVTKKVRVTFEDGSDTELLFSELTPEKLAQATTIHSCEPTLEDIFIQQTGATLNV"
     gene            1037..1771
                     /locus_tag="U1404_001230"
     CDS             1037..1771
                     /locus_tag="U1404_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348191.1"
                     /translation="MYKRFLALLWLRTQVLVTNKNILLPVLMPYFMLLLFKFVMKTDD
                     TKAMDLMGICFSMAIGMSVGSPISAMISEEKEKNNLSTLLLTGVRPSEYVLSILCYPV
                     VISFVNLILFPAITQADVSGYMLSYSVIMLLTSLASILINLLIGATSQSQSKSQVTSM
                     MITMAVSMGPSLSLMNETVGQILKYSFLGAYIEFFKNPHFELLNQEFYYLLGWIVLIS
                     LALILYLGNWMKYFKNSLSGIKEKIQ"
     gene            2106..2834
                     /locus_tag="U1404_001231"
     CDS             2106..2834
                     /locus_tag="U1404_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEM5348192.1"
                     /translation="MNMFWSIFKSVIHRRDVALFYAFAGLPILVPILSKFLVGVKAEY
                     TDNFLDFLGAALATQDGIVLPILLLSLIISAVFRDEIDSGILFLYKDLNRTRLFNAKI
                     ISLVTMYASYVLLTMLTSAIAYFGFLNASGKVVSDDWNNVQSTFLSIFATISINVIGI
                     LLVAMVSIKAKSLQAVLAGVFWSLFTTTAPFLIGVRYVVPNGYAQMSFNQPLLAWSLV
                     AAITTLYIVATYLKGRSNFEKLEF"
     gene            2844..3422
                     /locus_tag="U1404_001232"
     CDS             2844..3422
                     /locus_tag="U1404_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5348193.1"
                     /translation="MVIRYIRPVALSIALIILASISYLLATSLVLFSPSQFLQVAYLF
                     SIMVGMPVGFILFPSMLTKRYQLCQELSEVKFSWKSFVLLAIAIFLINFWCIQSDEYV
                     NQFIIATCEEFLFRYLIYRILKSEYPTWLAMLVTSLLFGVLLHMNYPLLDNLIIRTPL
                     GLLFSVLATRFGLQYAIGGHWIYNLLVSRFPF"
     gene            3437..3865
                     /locus_tag="U1404_001233"
     CDS             3437..3865
                     /locus_tag="U1404_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348194.1"
                     /translation="MIFILLLSLLYTCLTVVSSQLLLSLSVPILLLLTYLLPPIVNSI
                     CLGLLKDNSWKAWSAGIFPTMSMIFYAAFAYITSSNGQWAQFSQLNTVSDDVMSVEVA
                     SNLLAPSQILFVAVVYYGVAIATYFIQQTSRQKEKGVTYA"
     gene            3858..4730
                     /locus_tag="U1404_001234"
     CDS             3858..4730
                     /locus_tag="U1404_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348195.1"
                     /translation="MLKINHLSKQFAGNEFYSLKDVSLEINKGEIVGLIGKNGAGKST
                     LMKLIAKSLKPSSGTITYKGTDIFSQDNLLADFGIMIDPVFYPEMTVMDNLKFYLDLH
                     GKKDLYPNIEKTLKLVELWEARNRKPKGFSFGMKQRTALAIALVAEPDFLILDEPFVG
                     LDPIGVQKLIDILKQWSSERQISMLISSHQLGELEALCSRYVYIESGELAEAFEGKSH
                     PSVLVQLNTTKNLDSVEALLNDHVVLEGEVLEISTATPTSELNQIFGVLARQELIVKL
                     EVKENHLKEIFTKG"
     gene            4736..5506
                     /locus_tag="U1404_001235"
     CDS             4736..5506
                     /locus_tag="U1404_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348196.1"
                     /translation="MKQIFPAIFKTIWKRKETQIYLLFTLFPFIYLVTSFIEGSNFMQ
                     IHASEGSVSLVAFTNMMMSSVDSFILPSLTLYFLAISVFRKEVDEHTMFLYRDLGRKQ
                     IFWSKYLGLLATIVIFYGLFFATSAFVHYVRVIHLPFGSPSVFDTSLAESLSNVFCIV
                     AYLLKDILSVSLATALCLYLKNITTMIIGFLVTITMMILAVVGGPVAMIFPTSYMPLA
                     SEGLTGVGLAYLGAIGVTLVYALVFTKIAAKKFKNLEF"
     gene            5509..7221
                     /locus_tag="U1404_001236"
     CDS             5509..7221
                     /locus_tag="U1404_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348197.1"
                     /translation="MNRRLVGVLLKSLNKTMFLFGIALSALGVGMGLFLPQFIGQLLD
                     QTYLSNLLTRPELLAGFILFFVSVYTVQALSNYFIGRSGGNALKQLQQYIYESLLTTY
                     VKDLDQYQSGDLASRLTNDMSVVLNFITVILPNFLMNGLMVIGSIYFLWTISPWLTGL
                     SLLLLPMLSMVMIPMNQRLEGYYSAYQEGLGQVSSRISHKFTTIRLMKAFQGEKHEQR
                     EMGKSFQKLSQTFERMIRLSAVQHTLVSSLMTGFIILMLLVAGIEVTKGVMTMATLTT
                     FVLYMMQLIDPVTDIASSLNELTEFQAVSKRLVELLELTKEEQADTELVDEASIQLEN
                     VRFSYHTDPVLNGVSVRIPEGAHVAIVGPSGAGKSTIFALLMKYYQDYQGEIRIGQQC
                     LSDISTKEMRRLISFIPQDNTLFHGTIRENLLYGKNESVSEERIAHILKELGLSHLVA
                     ELEDGLDTRISENGTGLSEGQKQRFSIARALLLEHPIYLLDEATASLDTVTERVISKA
                     IDRLTAGKTRLTIAHRLHTVREADAILVLDKNGQVADYGPHQQLVERNHLYQDFLRGL
                     PQAS"
     gene            7323..7496
                     /locus_tag="U1404_001237"
     CDS             7323..7496
                     /locus_tag="U1404_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348198.1"
                     /translation="MKQTTYTLSLGGNDSGDSKVSKMEKKFEKYMEGIAERLRRSGKR
                     SIDKWIIRVRIEE"
     gene            7791..8792
                     /gene="ruvB"
                     /locus_tag="U1404_001238"
     CDS             7791..8792
                     /gene="ruvB"
                     /locus_tag="U1404_001238"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEM5348199.1"
                     /translation="MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIE
                     AAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDL
                     EPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
                     RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTP
                     RIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGG
                     GPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK"
     gene            8792..9538
                     /locus_tag="U1404_001239"
     CDS             8792..9538
                     /locus_tag="U1404_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348200.1"
                     /translation="MAEQMRRVARLFGDWPETIIWTCLEGTMGDIYVDDSQSPQSALA
                     LYGRQSFFGFLAGQPHRDLLKICEGKNIILVPQNQAWSDLIEEVYGDGVRFFTRYATK
                     KDTEFDLGHLQKLVDDLPESFDMKLIDRNLYETCLVEEWSRDLVGNYIDVEQFLDLGL
                     GCVILHKGQVVSGASSYASYSAGIEIEVDTREDYRGLGLAKACAAQLILACLDRGLYP
                     SWDAHTLTSLKLAEKLGYELDKAYQAYEWR"
     gene            9540..10178
                     /locus_tag="U1404_001240"
     CDS             9540..10178
                     /locus_tag="U1404_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEM5348201.1"
                     /translation="MTTPTFIWDLDGTLLDSYEAILAGIQETYEQFDIPFDREEVRNF
                     ILRYSVKDLLVRDADKYGLDSDELNHVRATSLKEKNTQIPLMTGAVEILNWTAEQGIQ
                     NFVYTHKSDNAFQVLEDLGIRHHFTEILTSDSGFARKPSPEALLFLIEKYGLDKESTY
                     YIGDRLLDVETAINAGIRSINLQINGVEQNWKIVSLLDIKQILTDKSSHNNL"
     gene            10425..>11093
                     /locus_tag="U1404_001241"
     CDS             10425..>11093
                     /locus_tag="U1404_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5348202.1"
                     /translation="MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGAS
                     KPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYGNEDLAEKRDAMM
                     TEIYDDYYDELPEEEKIVVDTLCSLFDVLDTDSQEYGKEILDDYLHQSYHRSKLSIND
                     LMILRLFIEHCQLEDLSVGTSNYALFTDLIEKLPQSIYDVHSESLFIVRDLFLAIVRI
                     LFSKE"
BASE COUNT         3136 a         1931 c         2541 g         3485 t
ORIGIN      
        1 aaattttttc aaaaaaaaca acgatttgcg aataagtaag tgagagggaa aattcccctc
       61 aaggagatac acacttgaaa aaataaatca ttttccaaat gatttacgaa taaacaagtg
      121 taggaaaaat gaaaggagaa gaaggatgat tatagcacca gctttatgga ttttatcatg
      181 gtggaaaaaa taagtttgtt ttaatttagg ggagtagaga tgataacagt tcaacatatc
      241 cataaacagt ttggagacaa ggttgcttta gacaacatta gctttgatat tcaagaagga
      301 caaatctttg gcttcttggg tccctctgga tcgggaaaga caaccatgat taagattatt
      361 accggccagc taccagcaga tagcggaaaa tcctatctac taggtaaaga atcgacccta
      421 ttgtcaccag aggactttga agcaatgggc ttggtcagtg attcgagtgg tttcttcgag
      481 aagatgacct tggaaaataa tttgttgttc tatgcaaaat tctttgatgt cagtccgaaa
      541 gaagtagagg ttattctgca aaaagtaggg ttactggata gtaaaaagac aattgcagaa
      601 aaactatcta caggtatgaa acagcgaatg ttgcttgcca gagccctgat caattcacca
      661 aaagtattgt ttcttgatga gccgacaagt ggtctagatc caacaacttc aaaacggatt
      721 catgaactat tattggagct aaaaggtaag gggacgacga tcttcttgac cacgcatgat
      781 atggcagaag cgacattctt atgtgatcaa ttggttctat tgaatcaagg aaatttggtt
      841 gaaaagggaa gtccgcagga tttaattcat aagtacaatg tcactaaaaa agtgagggtt
      901 acttttgagg atggtagtga tactgagctg ttgtttagtg agttgacacc tgagaagtta
      961 gctcaggcaa ccactattca ctcttgtgag ccgactttgg aagacatttt tattcaacag
     1021 acaggagcaa ccttaaatgt ataaacgatt tttagccttg ctttggcttc gcacacaagt
     1081 cttggtgacc aataaaaaca tcctattgcc agtattgatg ccttacttca tgttattgct
     1141 gtttaagttt gtcatgaaaa cagatgatac caaggcaatg gatttgatgg gaatttgttt
     1201 ttcaatggct attggtatgt cagtaggaag tcctatatct gcaatgattt ctgaagaaaa
     1261 ggaaaagaat aatctgtcta ccttgttact gacaggtgtt cgcccaagtg aatatgtgct
     1321 gtctattttg tgttatcctg ttgtcattag ctttgtcaac ctcattctat ttccagctat
     1381 cacacaggcc gatgtatcag gatacatgct tagctactca gtcatcatgc tcttgacatc
     1441 attggcttct attctaatca accttttaat cggggcaact tcccaatctc aatccaagtc
     1501 acaggtgacc tcgatgatga tcacaatggc agtatctatg ggacctagcc tgtctttgat
     1561 gaatgagaca gtggggcaga ttttgaaata tagttttcta ggagcttata ttgaattttt
     1621 caaaaatccc cattttgaac ttttgaatca agaattctat tacctattgg ggtggattgt
     1681 cctgattagt ttggccttga ttctctactt gggaaattgg atgaaatatt ttaagaactc
     1741 cctatcagga ataaaagaaa aaatccaata gtctttataa tatgagtaaa ttagaaagga
     1801 gaaatttatg gtatcagcat tcattatcgg tgtcggtgta ggaattattg tttattgtat
     1861 tcaaaactaa taggaaattg aagaaagagt attatattat gaaggaggag aaacacatgc
     1921 tagtagctgc agttacaggt ttcgttgttg gttatgtggc ggcacattat ttgagaccat
     1981 aattgatggt gaaatatgag tattaaaatt ctttggtttt tccagagaat ttttcttttt
     2041 gtttacgaat aaataagtga gggagttatt gctcatctat cttattgata aaaaggggaa
     2101 acaatatgaa tatgttttgg tcaattttta aatcggtaat acatcgaagg gatgttgctt
     2161 tgttctatgc ttttgctggt ttaccaatct tagttcctat actgtccaaa tttttggtag
     2221 gcgtaaaggc tgaatatacg gataattttt tagattttct aggagcagca ttggcaacac
     2281 aggatgggat tgtgttacca atattgttgt tatccttgat aatttccgca gtttttaggg
     2341 atgagattga tagcggtatt ctatttttat ataaagatct gaatagaact cgacttttta
     2401 atgcaaaaat cattagttta gtgacgatgt atgcctctta tgtccttcta acaatgctga
     2461 caagtgcgat tgcttatttt ggcttcttga atgcttctgg aaaagtagta tcggatgatt
     2521 ggaataatgt acagtccacc ttcctatcta tttttgcaac aatttcaatc aatgttatcg
     2581 gtattctatt ggttgccatg gtttctatca aagctaaatc cttacaggca gttttagcag
     2641 gagttttttg gtcgctgttt acaacaactg caccatttct cattggagtt cgttatgtcg
     2701 taccgaatgg ctatgctcag atgagcttta atcagccact gcttgcatgg tccttggtag
     2761 cagctataac aacattatat attgttgcta cctatctcaa aggccgttcg aactttgaaa
     2821 agctagaatt ttagaggtgt tttatggtaa tacgctatat tagaccagtt gccttatcaa
     2881 ttgctttgat tattttagcg tcaatttcat atcttctggc aacatctttg gttttgttta
     2941 gtcccagtca atttttacag gtggcttacc tattttccat tatggtcgga atgccagtag
     3001 gttttattct atttccatct atgttaacca agcgttatca actttgccag gagctatcgg
     3061 aagtaaagtt cagttggaaa agttttgttt tgctggctat tgcaattttc ctgatcaatt
     3121 tctggtgtat tcaaagtgat gagtatgtca atcaatttat tattgcgact tgtgaagaat
     3181 tcttgttccg ttatcttatc taccgtattc tgaaaagtga ataccctact tggctagcta
     3241 tgttggtcac ttctctcttg tttggagttt tgctacatat gaattatcca ttgttggata
     3301 atctaatcat tcgaactcca ctaggtttat tgttctctgt gttagctaca cgttttggat
     3361 tgcagtatgc tatcggagga cattggatct acaatctgtt ggtttcgaga tttccatttt
     3421 aattgtgagg gttatgatga tatttattct actattgagt ttattgtata cttgtttgac
     3481 agttgtaagt tcgcaactgc tgttaagcct ttcggttcct attttgttat tgttgaccta
     3541 tttgctacca cccattgtca attcaatctg tttaggattg ctaaaggata attcttggaa
     3601 agcatggtca gcaggcattt ttccaacaat gtcaatgata ttttatgctg cttttgccta
     3661 cattacgagt agtaatggtc agtgggctca gttttctcaa ctgaatacag tttcagacga
     3721 tgtcatgagt gtcgaggtag ctagtaatct gttagctcca tcacaaatac tatttgttgc
     3781 tgtagtgtat tatggtgtag ctattgctac atactttatt caacaaacaa gtcgtcagaa
     3841 agaaaaagga gttacttatg cttaaaatca atcatttatc aaaacagttt gcaggaaacg
     3901 aattttactc actaaaagat gtgagtttag agatcaataa gggcgagatt gttgggctga
     3961 ttgggaaaaa cggagctgga aaatccacgc tcatgaaatt aatagccaag tccctaaaac
     4021 caagttcagg aaccattact tataagggga cggatatttt tagtcaggat aatttgttgg
     4081 cagattttgg gattatgatt gatcccgtct tctatccaga aatgacagtt atggacaatc
     4141 ttaagtttta tttggatctg catgggaaaa aagacctcta tccaaatatt gagaagactt
     4201 tgaaattagt agaattgtgg gaagctcgca atcggaaacc caagggattc tcgtttggta
     4261 tgaaacaacg gactgctttg gcaattgcct tggttgcgga gccagatttc cttatcttag
     4321 atgagccgtt tgtgggcttg gacccgattg gtgttcagaa attgattgat attttgaagc
     4381 agtggtcgag tgagcgacaa atttccatgc tgatttcgag tcaccaactg ggggagctgg
     4441 aggccttgtg cagccgctat gtctatatcg aatcgggaga attggcagag gcttttgaag
     4501 gcaaatctca tccaagtgtg ctcgtgcagt tgaatacgac taaaaaccta gactctgtag
     4561 aggctttgct caatgaccat gtggtgctag agggggaagt gttagaaatt tccactgcta
     4621 cacctaccag tgagctaaat cagatttttg gtgtgctggc tcgtcaagaa ttgattgtga
     4681 aactagaagt gaaagagaat cacttgaaag aaatctttac gaaagggtag tgagtatgaa
     4741 acaaattttt ccagctatct ttaaaacgat ttggaagcga aaggagacgc agatttatct
     4801 cctgttcact ttgtttcctt ttatttatct ggtcacttca tttattgaag ggtcgaattt
     4861 tatgcaaatt catgctagtg aggggtcggt tagccttgta gcctttacga atatgatgat
     4921 gagctctgtg gatagtttta ttcttcctag tttgaccctg tatttcttgg ctatctctgt
     4981 ctttaggaag gaagtagatg aacataccat gtttttatac agagatcttg ggcggaaaca
     5041 gattttctgg tctaaatatt tgggtctctt agcaacaatt gttattttct atggtctctt
     5101 ctttgcgaca tctgcatttg tacattatgt tcgagtaatt cacctgcctt ttggcagtcc
     5161 gtccgttttt gatactagtt tggcagagag tttgagtaat gtgttttgta ttgtcgctta
     5221 tttactaaaa gatattttat cggttagttt ggcaactgct ctttgtttgt atctgaaaaa
     5281 tattaccaca atgatcatag gattcttggt gacgattacg atgatgattt tagcagttgt
     5341 tggcggtcca gttgcgatga tttttccaac tagttatatg cctttagcga gcgaaggtct
     5401 aacaggagtg ggacttgctt acttaggagc tattggtgtg acgcttgttt acgcactcgt
     5461 atttactaaa attgctgcga aaaaattcaa gaatttggag ttctaggtat gaatagaaga
     5521 ctcgtaggag tattgttgaa atcgctcaat aaaacgatgt tcttgtttgg aatagcgctg
     5581 agtgctcttg gggttggaat gggcttattc cttccccagt ttattggtca gttgctagat
     5641 caaacctatt taagcaatct attaacacga ccagaattgc tggctggctt catccttttc
     5701 tttgtatcgg tttatacggt acaagcccta tccaattatt tcatcgggcg tagtggtggt
     5761 aacgcactca aacagttgca acaatatatt tatgaatcct tgttgaccac atatgtaaag
     5821 gacttggatc agtaccaatc cggtgatctt gccagtcgtt tgaccaatga tatgtcggtt
     5881 gttctgaact tcatcaccgt tattcttcca aatttcttga tgaatggttt gatggttatc
     5941 gggtcaattt attttctgtg gaccatcagt ccgtggctca caggtcttag tctcttgttg
     6001 cttcctatgt tgtcaatggt tatgattcca atgaatcagc ggttggaagg ttactactct
     6061 gcttatcaag agggattagg gcaggtttct agtagaatta gtcataaatt tacaacgatt
     6121 cgtttgatga aggcctttca gggagaaaag catgaacaac gagagatggg caagtctttt
     6181 cagaaactgt cgcaaacctt tgagagaatg attagactgt cagcggtgca acatactttg
     6241 gttagtagct tgatgacggg ttttatcatt ctgatgttgc tggtagcagg tatagaagtg
     6301 accaagggag tgatgaccat ggctacattg acaacctttg tattgtacat gatgcaactg
     6361 attgatccag taacagatat tgcctcttcc ttaaatgaac taacggagtt tcaggcggtg
     6421 tctaaacgtt tggtagagtt gctggagctg actaaggaag aacaggcaga tacagagttg
     6481 gttgatgaag ctagtatcca gttggaaaat gttcggtttt cctatcatac agatccggtt
     6541 ttgaatggag tatcggttag aattcctgaa ggagctcatg tggcgattgt tggtccaagt
     6601 ggagcaggaa aatcaactat ttttgccttg ctgatgaaat actatcaaga ctaccaagga
     6661 gagattcgga ttggtcaaca atgcttaagt gatatttcaa ccaaggagat gagaagattg
     6721 atttccttta tacctcaaga taataccctc ttccatggga cgattagaga aaatctattg
     6781 tatggaaaga acgagtcagt gtctgaagag cgtattgctc atattctcaa ggagttggga
     6841 ttgtctcatt tagtagctga gttggaagat ggtttagata ctcggatttc agaaaatggg
     6901 acaggtttgt cggaaggcca aaaacaacga tttagcattg cgagagcctt gttgttagag
     6961 catcctatct atttgttgga tgaggcgaca gcaagtttag atactgtcac agaacgtgtc
     7021 attagcaaag cgattgaccg tttaacagct gggaaaacaa ggctaaccat tgctcaccgt
     7081 ttgcacacag tgcgtgaggc ggatgcgatt ctggtcttag ataaaaatgg gcaagtagcc
     7141 gattatggtc ctcaccagca gttagtggag agaaatcatc tctatcaaga tttcttaaga
     7201 ggcttaccgc aagccagtta gtgaatggga gtcgatggac cgactagtct aagtctaggg
     7261 ttacctaata ataaaatgga atactgatga ttacttgcac aataaataga taggagaaga
     7321 gaatgaaaca aacaacttac acattatctt tgggaggaaa tgatagcggg gattcgaaag
     7381 tttcaaagat ggaaaaaaag tttgaaaaat atatggaggg gatcgcagag cggttacggc
     7441 gttctgggaa gaggagtatt gataaatgga ttatccgtgt gcggattgag gagtaaagta
     7501 gctatgacca aaattcacag acgtttttat aaatagtgaa aaatagaatg aattctcttt
     7561 tagtttccct taagtttggc gagttatact ttattcaagc tagaaatagc gagactttta
     7621 ctgaaatagt ttcaatatcg tcatccgtaa gagctaaagc tcaaacggct ggcatatctt
     7681 ttcaatccgt atctctaagt cgcaagcgac aaggactagg gattatataa tctcctgaga
     7741 atactggact cactgagtct ggtattttca ttttatgcta taatggtttc atgacaaatc
     7801 gaattttaga tatggaacaa atgcaggacg aggagtatgt tgagcgtacc ctgcgtccgc
     7861 agaaattaaa tgaatacatc ggtcaggata aggtcaagga ccagctcaaa atctttatcg
     7921 aggcggccaa gctccgtgat gaagccttgg accataccct tctttttggc ccaccgggtc
     7981 tggggaagac caccatggcc tttgtcattg ccaacgaatt gggcgtcaat atcaagcaga
     8041 ccagtggtcc tgttattgaa aaagcgggtg acttggtggc ccttctcaac gacttggagc
     8101 ctggcgacgt cctctttatc gatgaaatcc accgtatgcc catggcggtc gaggaaattc
     8161 tctactctgc tatggaggat ttctacatcg acattatgat tggagcaggg gaggccagtc
     8221 gctccgtgca tttggagttg ccaccgttta ccctgattgg agcaaccact cgtgcgggta
     8281 tgctatccaa tcctctgcgg gcccgttttg gtattaccgg tcatatggag tattatgaac
     8341 tggctgattt gacggagatt gtcgagcgaa cagcggacat ctttgacatg gagattactc
     8401 atgaagctgc tattgagctg gctcgtcggt ctcgtggaac tccccgtatc gccaaccgct
     8461 tgctcaagcg ggtgcgggat ttcgcacaga ttatgggaga cggcctgatt gatgataaca
     8521 ttacggacaa ggccctgacc atgctggatg tggaccgcga ggggctggac tacgtggacc
     8581 agaagattct ccgcaccatg attgagatgt acggcggcgg tcccgtcggc ctcaacactc
     8641 tgtcggtcaa tattgccgag gagcgtgaga cggtggagga catgtacgaa ccttacctga
     8701 ttcagcaggg cttcctcatg cggacacgga cggggcgggt tgcgacagcc aaggcttacg
     8761 aacacctggg ctatccctat acggaaaaat aatggcagag cagatgagac gagtagctcg
     8821 tttatttgga gactggcctg aaacgataat ctggacctgt ctagaaggta ctatgggaga
     8881 catttatgtt gatgacagcc agtcacccca gtcagctcta gctctctatg gacggcagag
     8941 cttctttggt tttttagctg gccagccaca tcgagacttg ctaaaaatct gtgagggaaa
     9001 gaatattatt ctagtccccc aaaaccaagc ctggtcagac ttgatagaag aagtttacgg
     9061 agacggagtt cgttttttta ctcgatacgc tacgaaaaag gacactgagt ttgaccttgg
     9121 gcatttacag aaactggttg atgacttgcc tgaaagcttt gatatgaaac tgattgaccg
     9181 taatctgtac gagacttgtc tggtagagga atggtcacgg gatttggtgg gaaattatat
     9241 agatgtggaa caatttttgg acttgggtct gggctgtgtc atcttgcata agggacaggt
     9301 ggtctcaggg gcttcatcct atgccagcta ttcagctggg attgagatag aagtggatac
     9361 tagggaagac tatcgaggtc tgggtttggc aaaagcctgt gcggctcagt taattttagc
     9421 ttgtttagac cgcgggctct accctagctg ggacgcccat acactgactt ccttgaaact
     9481 tgcggaaaaa ctgggctatg aactagataa agcctatcaa gcatacgaat ggagatagaa
     9541 tgacaacacc gacctttatt tgggatttgg atggaacact tttagattct tacgaggcca
     9601 ttttggctgg tatccaagaa acctatgaac aatttgacat cccttttgat cgagaggaag
     9661 taagaaattt catcctccgc tattctgtca aggatttgct ggtgcgtgat gcggacaagt
     9721 acggtctgga tagcgatgag ctcaatcatg tgcgtgcaac ttccttgaag gagaagaata
     9781 cgcagattcc cttgatgaca ggtgcggtgg aaatcttaaa ctggactgcg gaacaaggca
     9841 ttcaaaattt tgtctatacc cacaagagtg acaatgcctt tcaggtcttg gaggacttgg
     9901 gcattcgcca ccatttcaca gaaatcttga ccagcgattc tggctttgcc cgcaaaccaa
     9961 gtccagaagc tctgctattt ctcatcgaaa aatacgggct ggataaggaa agcacctact
    10021 atattggcga ccgtctgctc gatgtggaaa cggctattaa tgcgggtatt cgtagtatca
    10081 atctgcaaat taatggcgtg gagcagaatt ggaagattgt ttctttattg gacataaaac
    10141 aaatattaac agataaatca agtcataaca acctgtgaaa acgggtggct tgtacaccag
    10201 ctataagctg tttctctcca gcgatgtcta aagacgtccg ctgaacttcg ttcaggttag
    10261 tgctatgatt acttgacgaa tgcccgtaac atcgggcttt tatcttgtta tggcttcaag
    10321 ctataataaa aacgaatcca gccgtctgtt ttaagaagag catgatatgg aatttgtgta
    10381 atatatttga tataatttaa aaagtatatt tggaggtgtg gtttatgaac gataaggagt
    10441 ttggacagcg tgtgcgtcaa ttacgagaat ctgctagtat gacacgtgaa cagttttgtg
    10501 acgatgaact ggaactctct gtgcgccaat taactcgtat tgaagcaggt gcttccaagc
    10561 cgactttttc aaagattcag tatattgcaa ctcgtttagg tatgggactt tacgagctta
    10621 tgccagatta tgtatcttta cccgaaagat attccaagct gaagtttgat gtgcttcgca
    10681 ccccaactta tggtaatgaa gatttggcgg aaaagcgaga tgccatgatg acagaaatct
    10741 atgacgatta ttatgatgaa ttgcctgagg aggagaaaat agttgtagac accctatgtt
    10801 ccctatttga tgtattggat acagatagcc aggaatacgg taaagaaatt cttgatgatt
    10861 atttacatca aagctatcac cgttccaaac tatctataaa cgatttaatg attttgcgat
    10921 tatttattga acattgtcag ttggaggatt tatctgttgg aacttccaat tatgctttat
    10981 ttacagattt gatagagaaa ttgcctcaat caatctatga tgtacattcg gaatccttat
    11041 tcattgtccg cgatttattt ctagctattg ttcgtatttt attttcgaag gag
//
LOCUS       DASGCC010000068        10596 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.068, whole genome shotgun sequence.
ACCESSION   DASGCC010000068 DASGCC010000000
VERSION     DASGCC010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10596
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.068"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(125..1000)
                     /locus_tag="U1404_001242"
     CDS             complement(125..1000)
                     /locus_tag="U1404_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5348203.1"
                     /translation="MKIDIRIPQAFPQLTVKEVLEDYFLIPRKIRHFLRTKKHVRVNG
                     ELINWQSPITAGDLLELTFDQEDYPEKSIPLGQADLVEELYQDEHLIIVNKPEGMKTH
                     GNEPTEIALLNHVSAYVGQTCYVVHRLDMETSGAILFAKNPFILPILNRLLEDKVIYR
                     DYLALCQGQLKETDWTITDKIGRDRHDRRKRMVDNRKGQAALTQVRLLKPLGKNSLVS
                     CRLQTGRTHQIRVHLAHHGHALIGDPLYSRVAAPRLMLHAQKLSLTHPLTLEEISVEA
                     RSESFEKARDRLKIT"
     gene            complement(1002..1970)
                     /locus_tag="U1404_001243"
     CDS             complement(1002..1970)
                     /locus_tag="U1404_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5348204.1"
                     /translation="MTQVYDITIIGGGPVGLFAAFYAHLRQAKVKIIDSLPQLGGQPA
                     ILYPEKAILDIPAFPSLTGQELTDNLLAQLAPFDTTICLNETLTAIEPGETITLTTNK
                     DCHQTKTLIIAMGGGAFKPRPLEIDGADSFDNVHSHVSNIQQYANKDIVVLGGGDSAV
                     DWSLAFEKIAKTTQIVHRRDNFRALEHSVEELKQSSVTIHTPFIPKGLSGENGRASSI
                     HFDKVKSEDKLTLSFDHLFVNYGFKSSVGTLKEWGLELNRHRIVVNSKQETSVPGIYA
                     IGDCCFYEGKVDLIATGLGEAPTAVNNAMNYINPNEKVQPKHSTSL"
     gene            2123..4336
                     /locus_tag="U1404_001244"
     CDS             2123..4336
                     /locus_tag="U1404_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5348205.1"
                     /translation="MDDLQHQPIEVPEDFQIDHDDRPSRRRRGNRGSVDKPRKKSRIP
                     EPIRKFWCRYQLTKILIILMVLTFLTVGGYLFFLAKTANVGDLQQALKATTIIYDKDG
                     AEAGTLSGQKGTYVELDAISDNLENAVIATEDRSFYKNSGINYQRTILAALTLGRSGG
                     GSTITQQLAKNAFLTQDQTISRKAREFFLALEINKKYSKQEILTMYLNNAYFGNGVWG
                     VEDASQKYFGIPASDLTLEQAAVIAGMLKGPEIYNPYYSLENAVNRRDTVLQNMVNAG
                     YIDQATADAGFQVDLASQLSDTYTGKQSNYSYPSYFDAVIAEAIERYGLKESDIINNG
                     YRIYTEMDQNSQASMQVIFNDETMFPTSSFDGTHAQAASVALDPRTGGVRALVGRVNS
                     SEDAVFRTFNFATQAKRSPGSTIKPLVAYAPAVAAGWSIDMALDNHTETYGDYTLHNY
                     DYSTSDTIPMYQALALSYNLPVAYIVNTLGIDKAFEYGQKFGLDMENVEKVLGVSIGS
                     GVETNPLQMAQAYATFANKGVMKDAHLITRIETASGKVLAEHRETSTKVIDRSVADKM
                     TAMMLGTYTNGTGVTADAANYYIAGKTGTTETSFDVNLVNDQWHIAYTPDLVISQWVG
                     FEQTDENHYIDSSSYWMAPSVFQTVANSILPYTAGTQFEVENAYAQNGIVEVAPDEAT
                     QTESSLGQEQVQEISDQAKNLIEQTKQNLIDAQLPERAKTLWDNITSWFGELSNP"
     gene            4370..4522
                     /gene="rpmG"
                     /locus_tag="U1404_001245"
     CDS             4370..4522
                     /gene="rpmG"
                     /locus_tag="U1404_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5348206.1"
                     /translation="MALKKASLACTVCGSRNYSISLSSNPKPTRLEVNKFCKHCGQYT
                     VHKETR"
     gene            4532..4708
                     /gene="secE"
                     /locus_tag="U1404_001246"
     CDS             4532..4708
                     /gene="secE"
                     /locus_tag="U1404_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEM5348207.1"
                     /translation="MKFIKDIIRILKDTSWPTRKQSWTDFVSVVEYTAFFVAVVYLFD
                     LILSRGIMSLINLF"
     gene            4818..5357
                     /gene="nusG"
                     /locus_tag="U1404_001247"
     CDS             4818..5357
                     /gene="nusG"
                     /locus_tag="U1404_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEM5348208.1"
                     /translation="MYDSFDKGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEI
                     PTQTVQVEKNGEVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKP
                     TPLLEEEIRQILVSMGQTVQEFDIDVKVGDTVRIIDGAFTDYTGKITEIDNNKVKMVI
                     SMFGNDTIAEVNLSQIAEL"
     gene            5499..10577
                     /locus_tag="U1404_001248"
     CDS             5499..10577
                     /locus_tag="U1404_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM5348209.1"
                     /translation="MKQKWSQIENKQRFSIKKLSVGVASVSIGFFITGVPMVQADTSG
                     EGLESTVAVATDMDSRQNSAVEKKEDGPLSDEPVKTEQVDEPVAEEGVVEEVVDTEAG
                     EESGLLTDQAATEIKTTAGKTTDESKEKEDISGKEASAPQTIPQESQLEPEEVTRGRY
                     ILQFSEENRNLVLDKLKKIDGVKIVHEYKEVLTGASVEVGKESLSDVKAITELTSLEE
                     SRRIRPTLHTAKQLVGALKASSKYQTDGRGMVIAVIDSGLDIKHKDMRLDDGVIPKIK
                     DITPSTTGTYTLKVPHGYNYVSGNDNLYDDTHEPHGMHIAGTLAGNATDEEVASKKGV
                     DGIAPNAQLLVYKIFSNDPKNYKAETEDAAYAAIEDAIKHGADVISLSVGYYDSGLPG
                     NAYYTIAKRAAEKGIIITAAIGNAGASSSDTSFDLHTNNALGAVDTATTVGVAATPAV
                     IAVGSARNTHLVQREFMLNGQSFGYYPIGYTTLTEGKYEFVDAGNGHWEEVQGLDLAG
                     KVAVIKKDKFDLKDAVRNLKFKDVAGIIVINTDQGWNKDYYRTHQLLVDDKTLLSYSS
                     IWGISLSGEDGRRLLEVANQSQGNAGLVLKPTIGMKKLIEVPTVSGFSSWGPTVNLEL
                     KPEIVAPGEDVYATLNDNRYGSMSGTSMASPIVAGASALLLPRIRQMTPPEGMTRMDL
                     LRIILMNTATPLVDVLDSSGHALENSPRQQGAGLLQIDRAFETDVILHHRLKGGVELK
                     EIGRETEFEVTLENLGNQQRSFAISAGKVLTSQDVPVDRIGRSGKVVKEIHATEIKGS
                     SIHLSEQSIQLGPKEKRTIRLKLDAGEAKDQFAEGYIYFKSLTDGQSDISIPYFGFVG
                     DWSKERIVDAPAWETSSKLKLTSVLSSYKHNKSGRYIELGREKIQDNQSPLNPDNIAI
                     QNQHSDSQIGNAFVRFALLRDITNYDLDIVKEATEDAPVLRRIDTGTMLSRVRYVDYF
                     ESLSEYFKLRTPIELHRWDGKVYDASNDENIPAPEGQYFFRLRVKNKENGAYQYTYLP
                     VKIDNQKPEIVAIDTNRLSSHRELVVTAKDNNKVWEVRANLNGEDLLVEKVVDDAGQL
                     HYHLKEVELPLDAKNHLRVEVMDIAGNVVAVEKDLMAPVIQFKNLEDLMAIRSKKTVE
                     IKANVSAQVSDVQANLDAQAVNYSLENGQLSLQIPEQSDGHHSFELILKDKYGNPIYT
                     KTLNYLVDNEKPTIDLDIEKDEEDEEVIQIGKNGRFTLKGKVSDNVSLPKNIKLYYSN
                     LDIGKGELKIIDVKEDGSFEQDFFKSDFPRAIMLTAVDEKGNKLKDLRINTSPESLDE
                     EEETEVPITVNNWLIDPIRFNKESLGRELDSELVDFKKQEDGTYLFTFEIEAETDQAH
                     SVRINGGEKRYFEDGKLTYPVTLIEEGNVVDISVYNEEDELTYTKKYQMLVDTENPVL
                     QLENEVLPLERQVVDSEEDEDEENQYAGVLLADADGHLTLTGSAKDNGIYWSLKINED
                     FVARGGFWRQYGNNEKAFRYELHSLKDGDTVKLDLSDSFGNALVKKYKVRLNDKEVSE
                     QVPEKDLHVEQSDKDQASSIPISKSEAHVPMPKEENSLASQTEFTEIVLLTGDTIEDG
                     VEHLVRLTKHEEALGISDERIEVSVPHRELFERSGRGETSALAADTSGKLPQTGDSLG
                     SVFISALLGLFGGAMALGNLKRKE"
BASE COUNT         3160 a         1929 c         2627 g         2880 t
ORIGIN      
        1 caaattggaa atcaatagag atgttgtgta agatatctat gatggctttg ccctcatccg
       61 taaaagaata aaaacgaaca ggaatccctc actaggtgta taatcttagt gagggatttg
      121 aggttcatgt gatttttagt ctgtcacgcg ccttttcaaa actctccgac cttgcttcta
      181 cactgatttc ttctaaagtc agcgggtggg tcaggctgag tttttgggcg tggagcatga
      241 ggcggggggc tgcaactcga ctgtaaagtg ggtcgccgat tagagcatga ccgtggtggg
      301 ctagatgaac tcgaatctgg tgggtccttc ctgtctggag gcgacaagag accaaactat
      361 ttttaccaag gggcttcaag aggcggacct gggtaagggc tgcctgtcct ttgcgattat
      421 cgaccatccg ctttctacgg tcatgcctgt cccgtccgat tttatcggta atggtccagt
      481 ctgtctcttt tagctggcct tggcagaggg ctaggtagtc acggtagatg accttgtctt
      541 ccaagagccg attgagaatg ggtaggataa aaggattttt agcaaagaga atggctccgc
      601 tggtttccat atcgagcctg tggaccacat agcaggtctg tcccacatag gcagatacat
      661 ggttgagtag ggcgatttcc gtcggttcat tgccgtgggt tttcatgcct tctggcttgt
      721 tgacgataat gaggtgctca tcttgataga gttcctccac caagtccgcc tgtcctagag
      781 gaatactttt ttcaggataa tcttcctggt caaaggtcaa ttctaacaag tcgcctgcgg
      841 taatcgggct ctgccagtta atcagctcac cattgacacg gacgtgtttc ttggtgcgga
      901 ggaagtggcg gatttttctg ggaatgagaa aataatcttc caagacctcc ttgacagtca
      961 gttgtggaaa ggcttgggga atgcgaatgt caattttcat cttataggct ggtcgagtgc
     1021 ttgggttgca ctttttcgtt tggattgatg tagttcatgg cattgttgac agcggttggg
     1081 gcttccccca gtccagttgc aatcaggtca actttgcctt catagaaaca acagtcaccg
     1141 atagcataga tgccagggac agaggtttct tgcttgctgt tgaccacgat gcggtggcga
     1201 ttgagctcca atccccattc tttcagcgtg ccgacagatg acttgaaacc gtagttgaca
     1261 aagaggtggt caaaagacag ggtgagtttg tcctcgctct taaccttgtc aaaatgaatg
     1321 ctagaagccc tgccattttc cccagaaagc cctttaggga taaaaggtgt gtgaatggtg
     1381 acgctggact gcttgagttc ttccacgctg tgctcgaggg ctcggaaatt atcacgacgg
     1441 tggacaatct gagtggtctt agcgattttt tcaaaggcta gagaccagtc gaccgcagag
     1501 tcaccaccac ccaagacgac gatgtccttg ttggcatact gctggatatt agacacgtgg
     1561 gaatggacgt tgtcaaagct gtcagcacca tcaatctcca gcggacgtgg cttgaaggcc
     1621 ccgccaccca tggcgataat cagggtcttg gtctggtggc agtccttgtt ggttgttagg
     1681 gtaatagttt ccccaggttc gatagcagtc agggtttcat tgaggcagat ggtggtgtca
     1741 aatggagcca gttgggcaag gaggttgtcg gtcaactcct gtcccgtcag gcttggaaag
     1801 gccggaatgt ctaaaatggc cttctcagga tagagaatgg caggctggcc acccagttgg
     1861 ggcagggagt caatgatttt gaccttggct tgacggaggt gggcatagaa agcggcgaat
     1921 aaaccgactg gtccgccacc gatgatagta atgtcatata cttgtgtcat gggaatcctc
     1981 ttatttgttc agaatgaccc tattttatca tatttttgga aaaaattccc tgtctgttgt
     2041 cacaagttat cgcaggcttt tttctgctag tttttaggaa atggtgtata atggtacaaa
     2101 attcactaga aagaggtaaa gtatggacga tttgcaacat cagccgattg aagttccaga
     2161 agatttccaa attgatcatg atgatcgacc tagccgtcgc cgcaggggaa atcgtggctc
     2221 tgttgataaa ccaaggaaaa aatcacgtat tccggagccg attcgtaaat tttggtgccg
     2281 ttatcaactg actaaaattt taatcatttt aatggtcctg acatttctta cggtaggtgg
     2341 ctatctattc ttccttgcaa agacagctaa tgttggtgat ttacaacagg cgctaaaagc
     2401 cacaacgatt atttacgata aagatggtgc ggaagctggg acattgtctg gtcagaaggg
     2461 gacctatgta gagctggatg ctatctctga taatttagag aatgccgtta tcgctacaga
     2521 agatcggagc ttctacaaaa attcaggcat taattaccag cgtaccattt tggctgcctt
     2581 gacgttaggt cggtctggag gtggttcaac tattacccag caattggcaa aaaatgcctt
     2641 tctaactcag gatcagacca tcagtcgaaa ggctcgagaa ttctttttgg ctctggaaat
     2701 caataaaaag tacagcaagc aagaaatcct gaccatgtat ctcaacaatg cttactttgg
     2761 aaacggggtc tggggagtgg aagatgcaag ccaaaagtac ttcggtattc cagccagtga
     2821 tcttactctt gagcaagcgg ccgtcatagc aggtatgctc aagggacctg agatttataa
     2881 tccttattat tctctagaaa atgcagttaa tcgtcgggat acagtcctgc aaaatatggt
     2941 caatgctggt tatattgatc aggcgactgc agatgcaggt ttccaagtag acctagccag
     3001 tcagctttca gatacctata cagggaaaca aagcaattat tcctatccat cctattttga
     3061 tgctgtgatt gctgaggcga ttgagcgata cggactaaaa gaatcagaca ttattaataa
     3121 cggctatagg atttacacag agatggatca aaattctcaa gccagcatgc aggtgatttt
     3181 taatgatgag actatgttcc caacatcaag ttttgatggt acccatgctc aggctgccag
     3241 cgtagctctt gatcctagga ctggtggagt tcgcgccttg gttggtcgag ttaacagttc
     3301 agaggatgcg gtttttcgga ctttcaactt tgcgacacaa gccaagcgca gtcctggttc
     3361 aacaatcaag cctcttgttg cctatgctcc agcagtagcg gcgggctggt cgattgatat
     3421 ggctctggat aaccatacag aaacctacgg cgattacacc ttacataact atgattattc
     3481 gacttctgat accattccaa tgtatcaagc tttggctctc tcttacaatt taccagtagc
     3541 ttatatagtg aacaccttgg ggattgacaa agccttcgag tatggacaaa agtttggact
     3601 tgatatggaa aatgtcgaga aagttttggg tgtttcaatt ggttctggag tggagactaa
     3661 tcctctgcaa atggcccagg cctacgctac ttttgcgaat aagggtgtga tgaaggatgc
     3721 acacctcatc actcgtattg aaacggctag tggaaaggtt ttggcagagc atcgcgaaac
     3781 aagtaccaag gtgattgacc gctctgtcgc agataagatg acagcaatga tgcttggtac
     3841 ctataccaat ggtacgggag tgacagcaga tgcggccaat tattatattg ctgggaaaac
     3901 aggaacaacc gaaacgagtt ttgatgtcaa tcttgtcaat gatcagtggc atattgccta
     3961 cacacctgat ttggtcatca gtcagtgggt tggttttgag cagacagatg aaaatcatta
     4021 tatagatagc agtagctact ggatggctcc gtcggtcttc cagactgtag ccaattcaat
     4081 cttgccatat actgctggaa ctcagttcga agtagaaaat gcctatgcac aaaatggtat
     4141 tgtagaagta gctccagatg aagctacgca aactgaatca agccttggtc aagaacaggt
     4201 acaagaaatt tcagatcagg cgaaaaactt gattgagcaa accaaacaaa atctaatcga
     4261 tgcccagtta ccagaacgag caaaaacctt gtgggataac attacgtctt ggtttggaga
     4321 gttgtcaaat ccataaaaac atggtagaat gaaaaggatg gagggcttta tggcactaaa
     4381 aaaagcaagc ctagcctgta ctgtttgtgg ttctcgaaac tattcaatca gcctttcgag
     4441 caatcccaag ccaacacggt tagaagtaaa taaattttgt aaacactgtg gacaatacac
     4501 tgttcacaag gaaaccagat aggagtcgcg catgaaattt atcaaagaca ttatccgcat
     4561 tttaaaagat acgtcttggc caactcgtaa gcagagctgg acggatttcg tgtctgtagt
     4621 ggaatatact gcctttttcg tagcggtggt ttacctcttt gacttgattt tgtcacgagg
     4681 aatcatgagc ttgatcaatc ttttctagaa aatacttgcc atttgtaaaa tggaagtgat
     4741 ataataagga aaagcgaaag ccttcgggct ttttttagcg tctaaaaatt ccgtgtttcc
     4801 aaagaaagga agtaacaatg tacgatagtt ttgataaagg ctggtttgtt ttacagacct
     4861 actcaggata tgaaaataaa gtgaaggaaa acttgctcca acgtgctcac acttataaca
     4921 tgttggaaaa catccttcgt gtagaaattc caactcagac tgttcaggtt gaaaagaacg
     4981 gtgaggtcaa ggaagtggaa gaaaaccgtt tccctggtta tgttttggtt gagatggtta
     5041 tgaccgatga agcttggttt gtggttcgta atacgccaaa tgttacaggt ttcgtgggtt
     5101 cacacggtaa ccgttcaaaa ccaactccac ttttggaaga agaaattcgt caaatcttgg
     5161 tgtctatggg acaaaccgtt caagaatttg atattgatgt caaagttggc gacactgttc
     5221 gtatcatcga cggtgccttc acagactaca caggtaaaat tacagaaatc gacaacaaca
     5281 aggttaaaat ggttatctct atgtttggta atgataccat tgctgaagtt aatttgagcc
     5341 agattgctga gttgtaataa gttgttaaag cgcagggaag cctgtgcttt ttcttgtttt
     5401 tgagggctaa ttcaaaaaac ttgccaaaga tttaaaaatt ttatagaatt aagtatacct
     5461 aacttataaa ttaattaatc ttaaaaaacg gaggttttat gaaacagaag tggtctcaga
     5521 ttgagaataa acaacgcttt agtatcaaga agttaagtgt cggtgtggca tcggtatcaa
     5581 taggattttt tatcacgggt gttccgatgg ttcaagcaga tactagtgga gaaggattgg
     5641 agtctacagt tgcggtcgca acggatatgg atagtaggca aaattctgcg gtagagaaaa
     5701 aagaagatgg accattatca gatgagccag ttaaaacgga gcaggtggat gaaccagttg
     5761 ctgaagaggg agtggtcgaa gaagttgtag atacagaggc gggtgaagaa tcaggtcttc
     5821 tcacagatca agctgcgacc gagataaaaa ctacagctgg taagacaaca gatgagtcaa
     5881 aggaaaaaga agacattagc ggaaaagaag ctagtgctcc tcaaacaatc ccgcaggaat
     5941 cacagcttga gccagaagag gtgacaagag ggcgctatat tttacaattt tccgaagaga
     6001 accgaaatct tgtattggat aaattaaaga aaattgatgg cgttaaaatt gttcatgagt
     6061 ataaggaggt tttaacggga gcatcagtag aggtagggaa agaaagtttg tctgatgtga
     6121 aggcaattac cgaattaacc tctttagaag agagtcgccg tatccgaccg actcttcata
     6181 ctgctaaaca gctggttggt gccttaaaag caagttctaa atatcagaca gatggtcgcg
     6241 gaatggtgat tgcagtcatt gactccggtt tggatattaa gcacaaagac atgaggttgg
     6301 atgatggtgt cattcctaaa atcaaggaca ttactccatc tacgacagga acatacacac
     6361 tgaaagttcc ccatggatat aattatgtat ctggtaacga taatctctac gatgataccc
     6421 acgaaccaca tggtatgcac atagcaggaa ctctggctgg aaatgcaaca gacgaagaag
     6481 ttgcgtctaa aaagggagtt gatgggattg ctcccaacgc acaactgcta gtctacaaga
     6541 ttttttcaaa tgaccctaaa aattataaag ctgagacgga ggatgctgct tatgctgcta
     6601 ttgaagatgc tatcaaacac ggggcagatg tcatcagctt gagtgttggt tattatgata
     6661 gcgggttacc agggaatgct tactacacga ttgctaagag ggcagcagaa aagggaatta
     6721 tcattacagc ggctattggt aatgctggtg cctcctcttc agacacctcc tttgacctgc
     6781 atacaaataa tgccttagga gctgtggata cggcaacaac agttggtgtg gcagcgactc
     6841 ccgcagttat cgcggttggt tcggcgagaa atacccatct tgttcaacga gaatttatgc
     6901 tgaatggaca gtcttttggt tactatccta ttggctatac aacgcttaca gagggaaaat
     6961 atgaatttgt agatgctgga aatggtcatt gggaagaagt gcaagggctt gatttggctg
     7021 gtaaagtagc ggttatcaaa aaagataagt ttgacttgaa agatgctgtt cgtaatttga
     7081 aattcaagga tgttgctgga attattgtga taaatactga tcagggatgg aacaaggatt
     7141 attataggac ccatcagttg ttggtagatg ataagacttt gctttcctac tcctctatct
     7201 ggggaattag tcttagcggg gaagatggaa ggcgattatt agaagttgcc aaccaatcgc
     7261 aaggtaacgc tggtttggtt cttaaaccta caattggaat gaagaagttg attgaagtgc
     7321 cgactgtatc aggcttttct agttggggac ctacggtcaa cttagaattg aagccagaga
     7381 ttgtggcgcc gggagaggat gtttatgcaa ccttgaatga caatcgttat ggctccatgt
     7441 cagggacttc gatggcttcg ccaattgtgg cgggtgccag cgcactttta ttgccacgga
     7501 ttcgccaaat gacaccacca gaaggcatga ctaggatgga tttgctgaga atcattttga
     7561 tgaatactgc tacccctttg gttgatgttc tagattcatc tgggcatgct ttggaaaatt
     7621 ctccgagaca acaaggtgct ggtctgttgc agattgatag agcctttgaa acagatgtga
     7681 ttcttcacca ccgtctaaaa ggaggggtgg aattaaaaga aatagggcgt gagacagaat
     7741 ttgaggtaac cttggaaaat ctgggaaacc aacaaagaag ctttgctatt tcagctggga
     7801 aagtgttgac tagtcaagat gttcctgttg atagaatagg acgttctgga aaagtagtta
     7861 aagagattca tgcgacagaa atcaaggggt cgagtattca tctttctgag caatccattc
     7921 aactaggtcc aaaagagaag agaaccattc gcctgaaatt ggatgcagga gaagcgaaag
     7981 accagtttgc agaagggtat atttacttca aatcattgac ggatgggcag tctgacatca
     8041 gcatacctta ttttggcttt gttggtgact ggtcaaaaga aaggattgtt gatgcaccgg
     8101 cttgggaaac cagttctaaa ttgaaactga cctcagtttt atctagctat aaacacaata
     8161 agtctgggcg ctatattgaa cttgggcgtg aaaagattca agataatcaa tcgcctctaa
     8221 atccagacaa tatcgcaatt caaaaccagc attcggatag tcagattggg aatgcctttg
     8281 ttcgatttgc actattgagg gatattacca actatgattt ggatattgta aaagaagcta
     8341 cagaagacgc tcctgtttta aggcggattg ataccggaac catgctgtct cgtgttcgct
     8401 atgtagatta ttttgaaagt ctatcggagt atttcaagct tcgtactccg atagaattgc
     8461 accgttggga tgggaaagtg tacgatgcaa gcaatgatga aaatatacca gcaccggaag
     8521 gacaatattt ctttagattg cgggtaaaaa ataaagaaaa tggggcctat cagtatacct
     8581 atctgccagt caaaattgat aatcaaaagc cagagattgt cgcgattgat accaatcgtc
     8641 tatccagcca tagagaactg gtcgtcacag ccaaggataa taataaagtt tgggaggttc
     8701 gagctaatct aaatggagaa gatcttcttg ttgaaaaggt tgtagatgat gcaggtcaac
     8761 tacattacca tctcaaagaa gtggaactgc cactcgatgc taaaaatcat ctccgtgttg
     8821 aggtgatgga tatagcgggt aatgtggttg ctgttgaaaa agatttgatg gcgcctgtaa
     8881 tccagtttaa aaatttggaa gatttgatgg caattcgcag taagaaaact gtagaaatta
     8941 aagcgaacgt ctcagcgcaa gtttccgatg tacaggctaa cttggatgct caggctgtga
     9001 attactctct tgagaatggt caactatctc tccagattcc agagcaatca gatggacatc
     9061 atagttttga attaatcttg aaagataagt atggcaaccc tatttacact aaaaccttga
     9121 attatttggt agataatgaa aagccgacga ttgatcttga tattgaaaaa gatgaagagg
     9181 atgaagaggt tatccagatt ggcaaaaacg ggcgttttac attgaagggg aaagtgagtg
     9241 ataatgttag tcttcctaag aacatcaaac tttactattc caatctagac attggtaagg
     9301 gagagctgaa aatcatagat gtaaaagaag acggcagttt tgagcaagac ttctttaaat
     9361 ctgattttcc tagagccatc atgttaactg cggtagatga gaagggcaat aaattaaagg
     9421 accttcgtat caatacaagt ccagagagtc tggatgagga ggaggaaaca gaagttccga
     9481 ttactgttaa taactggttg attgacccga ttcgtttcaa taaagaaagt cttggtcgtg
     9541 agctagatag cgagttggtc gacttcaaaa agcaagaaga tgggacttat ctatttacat
     9601 ttgaaataga agcagaaacg gatcaagctc attctgtgcg catcaatggt ggcgaaaaac
     9661 gctattttga ggatggcaag ttgacctatc cagttactct gattgaagag ggaaatgttg
     9721 tggatataag tgtgtacaat gaggaggatg agttgactta cacgaagaaa tatcagatgt
     9781 tggttgatac agaaaatcct gttttacagc tggaaaatga ggtgctacca ttggaaagac
     9841 aggtagtgga tagtgaagaa gatgaagacg aggaaaatca gtatgcagga gttctcctgg
     9901 cagatgctga tgggcacttg acacttaccg gaagcgccaa ggataatgga atttattggt
     9961 ccttgaagat caacgaagat tttgtagctc gaggaggctt ctggaggcag tatggaaata
    10021 atgaaaaagc ctttcgctat gagctacata gtctgaaaga cggggataca gtcaaacttg
    10081 atttgagtga cagttttgga aatgctcttg tgaagaaata taaggtacgg ttaaatgaca
    10141 aggaagtatc tgagcaagtt cctgaaaaag accttcatgt ggagcaatca gataaggatc
    10201 aagcctctag cattcctatt tcgaaatcgg aagcgcacgt accaatgcca aaagaagaga
    10261 attcgcttgc ttcgcaaaca gaattcactg aaatcgtgct gttaactggc gatacaatag
    10321 aagatggtgt ggagcatttg gtgagactta caaaacatga ggaggcacta ggaatttctg
    10381 acgagagaat agaagtgtcc gtacctcaca gagaattatt tgaaagaagc ggaagaggag
    10441 agacaagtgc attagcggcg gatactagtg ggaaactgcc tcaaactggg gatagccttg
    10501 gaagtgtctt tataagtgct ttgttaggtc tatttggtgg agctatggcc ctcggaaatc
    10561 tgaagcgaaa agaatagtaa aaaacctagg aagatt
//
LOCUS       DASGCC010000069        10333 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.069, whole genome shotgun sequence.
ACCESSION   DASGCC010000069 DASGCC010000000
VERSION     DASGCC010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10333
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.069"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(118..309)
                     /locus_tag="U1404_001249"
                     /pseudo
     CDS             complement(118..309)
                     /locus_tag="U1404_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775050.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
     gene            complement(567..1502)
                     /gene="dapA"
                     /locus_tag="U1404_001250"
     CDS             complement(567..1502)
                     /gene="dapA"
                     /locus_tag="U1404_001250"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEM5348210.1"
                     /translation="MSIQDLRDVKIITAMITPFKEDGSINFEVLPELIEHLLSHHTEG
                     ILLAGTTAESPTLTHEEELELFGAVQKIVNGRVPLIAGIGTNDTRDSIEFAKEVAAFG
                     GFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVEMTPETMLRLAE
                     HPNIIGVKECTSLANMAYLIEHKPEDFLIYTGEDGDAFHAMNLGADGVISVASHTNGD
                     EMYEMFTAIEQQDIRTAAAIQRKFIPKVNALFSYPSPAPVKAVLNYLGFEVGPLRLPL
                     VPCPEEDAKRIIKVVVDGDYEATKATVTGVVRPDY"
     gene            complement(1575..2651)
                     /locus_tag="U1404_001251"
     CDS             complement(1575..2651)
                     /locus_tag="U1404_001251"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000542485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEM5348211.1"
                     /translation="MAYVVAVVGATGAVGAQMIKMLEESTLPIEKVRFLASARSAGKT
                     LQFKGQDIVIEETTETAFEGVDIALFSAGGSTSAKYAPYAVKAGAVVVDNTSYFRQNP
                     DVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGLERIIVSTYQAVSGA
                     GMGAILETQAQLRSVLNDGVEPKAVEANILPSGGDKKHYPIGFNAIPQIDLFTENDYT
                     YEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKGIAPIDEVKAAIASF
                     PGAVLEDDVANQIYPQAINAVGSRDTFVGRIRKDLDKENGIHMWVVSDNLLKGAAWNS
                     VQIAETLHERGLVRPTAELKFELK"
     gene            complement(2820..3914)
                     /locus_tag="U1404_001252"
     CDS             complement(2820..3914)
                     /locus_tag="U1404_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol dehydrogenase"
                     /protein_id="HEM5348212.1"
                     /translation="MKVFASPSRYIQGKHVLFQGAEAIGKLGTKPLILCDDLVYGIVG
                     EKFLSYLVEEGMQVYRVAFNGEASDKEIQRVVEIGKEQASDVVIGLGGGKTIDSAKAI
                     ADLLGVPVVIAPTIASTDAPTSALSVIYSEEGAFERYIFYKKNPDLVLVDTAIICQAP
                     PRLLASGIADGLATWVEARAILQSNGTTMAGGGQTLAGIAIAQTCEQTLFEYGLQAMA
                     SCEAKVVTAALENIVEANTLLSGLGFESAGLAAAHAIHNGFTALEGDIHHLTHGEKVA
                     YGTLTQLFLENRPKEELEKYIRFYQALNLPTTLEELHLADAGYEDLLKVGQQATIEGE
                     TIHGMPFAISAEDVAEALMAVDYYVRSLDK"
     gene            complement(4035..4991)
                     /locus_tag="U1404_001253"
     CDS             complement(4035..4991)
                     /locus_tag="U1404_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM5348213.1"
                     /translation="MKQFSGLSRTIQGNHLLDTCAIDILKIGHRPLVLCAKQEYNTTV
                     ESFVKVLTCHGLIVKIVYMEEWDQNSVEECGEVGFRHRADHIIGIGNSSVAACTKAVA
                     DLLDLPAVLIPTSPFTTLPWVSVENKKRERPLFNESIQLIIADREQLLTQPTSELING
                     VVNTLLYLAAIKEVKRNHLFSLVDDILIRSFESVLLRGSLQAIEDFEARILSKEVQDV
                     LEVLSTCVTLDLPSDAWDVIQQIESKLSERREDLVDEPLKRNVVLYLLLSYLTQESEE
                     FQARLKWCQQLLLSANSSNLLSLEAVLKEIALEMGEDGSTRC"
     gene            complement(5023..5691)
                     /locus_tag="U1404_001254"
     CDS             complement(5023..5691)
                     /locus_tag="U1404_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEM5348214.1"
                     /translation="MEFMLDTLNIEEIRKWAEVLPLAGVTSNPTIAKKEGDIDFFERL
                     HLIRDIIGPNASLHVQVVAKDYEGILADAKKIRELAPENVYIKVPVTPAGLAAMKTLK
                     AQGYQITATAIYTVFQGLLAIEAGADYLAPYYNRMVNLNIDSNAVIAQLSEAIDRECS
                     ESKILAASFKNVEQVNQAFANGAQAITAGADIFEAAFSMPSIEKAVNDFADDWSAIHG
                     RYTI"
     gene            complement(5706..8150)
                     /locus_tag="U1404_001255"
     CDS             complement(5706..8150)
                     /locus_tag="U1404_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HEM5348215.1"
                     /translation="MKTVTEVAGTSIKTEYFGSLTDRMNKYREDVLDKKPYIDAERAV
                     LATKAYQEHREKPNVLKRAYMLKEILENMTLYIEEESLIAGNQASSNKDAPIFPEYTL
                     EFVLNELDLFEKRDGDVFYITEETKEQLRSIAPFWEKNNLRSRAGVLLPEEVQVYMET
                     GFFGMEGKMNSGDAHLAVNYQKVLEQGLRGFEERVRAAKANLDLTDPASIDKYHFYDS
                     IFIIIDAVKAYANRFVALATELAEKAPTAQRRQELLEIARICAKVPYEPAETFAEAVQ
                     SVWFIQCILQIESNGHSLSYGRFDQYMYPYVNADLEAGRETEDSIVERLTNLWIKTIT
                     INKVRSQSHTFSSAGSPLYQNVTIGGQTRDKKDAVNPLSYLVLKSVAQTHLPQPNLTV
                     RYHAGLDARFMNECIEVMKLGFGMPAFNNDEIIIPSFIEKGVLEEDAYDYSAIGCVET
                     AVPGKWGYRCTGMSYMNFPKVLLITMNDGIDPASGKRFAPAFGHFKDMKSFEELETAW
                     EKTLRHLTRMSVIVENAIDIALEREVPDILCSALTDDCIGRGKHLKEGGAIYDYISGL
                     QVGIANLSDSLAAIKKLVFEEGRLTPEELWHALETDYAGERGKEIQEMLIEDAPKYGN
                     DDDYADQLVTAAYDIYIDEIAKYPNTRFGRGPIGGIRYSGTSSISANVGQGRGTLATP
                     DGRNAGTPLAEGCSPSHNMDKNGPTSVLKSVAKLPTHEIVGGVLLNQKVNPQTLAKEE
                     DKQKLIALLRTFFNRLHGYHIQYNVVSRETLIDAQLHPEKHRDLIVRVAGYSAFFNVL
                     SRATQDDIIGRTEHTL"
     gene            complement(8302..9603)
                     /locus_tag="U1404_001256"
     CDS             complement(8302..9603)
                     /locus_tag="U1404_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5348216.1"
                     /translation="MSKIDTQKIIVPIMKFVNMKGIIALKDGMLAILPLTVVGSIFLI
                     LGQLPFEGLNAAIASIFGAEWTEPFMQVYSGTFAIMGLISCFAIGYSYAKNSGVEPLP
                     AGVLSLSSFFILLKSSYIPVDGEPIGDAIAKVWFGGQGIIGAIIIGLVVGAIYTTFIQ
                     RHIVIKMPEQVPQAIAKQFEAMIPAFVIFLLSMIVYIVSKMATNGGTFIEMIYDVIQV
                     PLQGLTGSLPGAIGIAFFISFLWWFGVHGQSVVNGVVTALLLSNLDANKALLAADKLS
                     LENGTHIVTQQFLDSFLIMSGSGITFGIVFAMLFAAKSKQYKALGKVAAFPALFNVNE
                     PVVFGFPIVMNPVMFLPFVLVPILAAFIVYGAISIGFMQPFSGVTLPWSTPAIISGFM
                     VGGWQGAVVQIIILAVSTIVYFPFFKIQDKIAYESETKEPV"
     gene            complement(9616..9921)
                     /locus_tag="U1404_001257"
     CDS             complement(9616..9921)
                     /locus_tag="U1404_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5348217.1"
                     /translation="MVKIALFCAAGFSTGMLVNNMKIAAADAGVEVEIDAHSQGKIAD
                     YLDEIDVALLGPQVAYTLDKSKALCDEKQVPIAVIPMADYGMLDGKKVLQLALSMVS"
     gene            complement(9954..10277)
                     /locus_tag="U1404_001258"
                     /pseudo
     CDS             complement(9954..10277)
                     /locus_tag="U1404_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935429.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
BASE COUNT         2967 a         2354 c         1949 g         3063 t
ORIGIN      
        1 acttgttcag gtcttttttg tttgcttgtt ttctccataa gaccagttcc tcccttattt
       61 ggtatctacg taataaaaaa acttccctaa ccattgctga ttagagaagg atatttctta
      121 aaaaatgaga ccataaagga cagccgcaag caagcctccg atgattggac caactactgg
      181 tacccaagca tagccccaat ctgaatctcc cttatgcttc aatggaagga tggcaagcat
      241 gatacgagga ccaaggtcac gcgcagggtt tagggcatat cctgtcggac caccaagaga
      301 aactccgagt caaaacaaag gttccgattg cttcgctaat tgtaaatgtc ccccagacat
      361 tgttcgctct cttatttcaa ggctcacgtt aaaatacttc gcttttttat tttcaagctc
      421 agataagaat agtccactgg actattctta tcccctaact atcctcgctt tccagtttcc
      481 aggctcgggt cttctatggt cactttcata tttcttggtg accagctgaa acagttcccc
      541 gaactgtttc actcccccag acatttttaa taatccggtc ttacgactcc tgtcacagtg
      601 gctttagttg cttcgtagtc gccgtcaacg actactttga taatgcgttt ggcatcttct
      661 tctgggcatg gaaccaacgg caagcggagt ggaccaactt caaatccaag gtaattaaga
      721 accgccttaa ctggtgcagg acttggatat gagaagaggg cattgacttt cggaatgaac
      781 ttgcgttgaa tagcggctgc tgttcgaata tcttgttgtt cgatggctgt aaacatttca
      841 tacatctcat caccattcgt gtgagatgca acagaaatca caccatctgc tcccaagttc
      901 attgcatgga aagcatcgcc atcctcacct gtataaatca agaagtcttc tggtttatgc
      961 tcaattaggt aagccatatt ggcaaggctt gtacactctt taacaccgat gatatttgga
     1021 tgctctgcca aacgcaacat ggtttctggt gtcatttcga ccacaacacg ccctggaata
     1081 ttgtagataa tgattggtaa atcagaagca tctgcaatgg ccttgaagtg ctgatacatt
     1141 ccctcttgag agggtttgtt gtagtaaggc acgatagcaa gccctgccgc aaagccgccg
     1201 aatgccgcca cttctttggc aaactcaatc gagtcgcgcg tatcgtttgt accgatacct
     1261 gcaattaggg gaacacgacc attgacaatt ttttgcacag caccaaatag ttccagttct
     1321 tcctcgtgtg tcagggttgg actttcagca gttgttcctg ctaataaaat cccttctgtg
     1381 tgatgggaca acagatgctc aatcaactca ggtaaaactt caaaattaat cgagccatct
     1441 tctttgaaag gggtaatcat tgctgtaata atttttacat cacgtaaatc ttgaatagac
     1501 ataggcttcc tctcttactg attgttgcta aaaaaggctg agtgcagcct tttgtgtact
     1561 tttggttaat aaaattattt caattcaaac ttcaattctg ccgttggacg aactagacca
     1621 cgctcatgaa gggtttcagc gatttgaaca gagttccatg cagcgccttt gagcaagttg
     1681 tcagaaacaa cccacatgtg aataccgttt tccttgtcca aatctttacg gatgcgacca
     1741 acaaaagtat cgcgactacc aacagcatta atggcttgcg gataaatttg attagccaca
     1801 tcgtcttcta aaacagcccc tgggaaggat gcaatagctg ccttcacttc atcaatcggt
     1861 gcaattccct tagtttcaat gtaaacagat tcagagtgag ctgacaagac tggaatacgg
     1921 acgcaggttg cagaaacggc aatgctgtca tcttccatga ttttcttagt ctcttttgtc
     1981 atcttcatct cttcgtatgt gtagtcattt tcagtgaaga ggtcgatttg cggaatagca
     2041 ttgaaaccga ttggatagtg cttcttatcg ccaccagaag gaagaatatt cgcttctacc
     2101 gctttgggtt ccacgccatc attcaagaca gaacgaagct gagcttgtgt ttccaagata
     2161 gctcccatac ctgctccaga gactgcctga taggtggata cgatgatccg ctccaagccc
     2221 catttctgac gaacaggctc caaggcaacc atcatttgaa tggttgagca gtttggacaa
     2281 gcaatgatac cattgtgggc atcaagcgcg tgagcattta cctcaggaac aaccagagga
     2341 acatctggat tttgacggaa gtaagaggta ttgtcaacta ctacagctcc tgcttttaca
     2401 gcgtaaggag cgtacttggc agatgtagag ccaccagctg agaagagggc aatatccact
     2461 ccttcaaagg ctgtttctgt tgtttcttca atgacaatat cctgcccctt aaactgcaag
     2521 gtcttacctg ctgaacgggc agaagcaagg aaacgcactt tctcgattgg aagtgttgac
     2581 tcttccaaca ttttaatcat ttgggcacca actgcaccag tggcaccaac aacagctact
     2641 acataggcca tagaaatctc ctttaagtca attcttcaaa attttctaaa tattttatat
     2701 ttaacaatta tatcataatt ttttcaaatg aaaagccctg agaaagaatt tcccaaggca
     2761 attacttcga acctctattc accagtttag atggacatgc tcaactgtga atgctcttct
     2821 tatttatcta atgagcgaac atagtagtca actgccatca gagcttctgc aacgtcttct
     2881 gctgaaatag caaatggcat accgtgaatt gtttctcctt caatcgtcgc ttgttggccg
     2941 actttcaata gatcttcata accagcatca gccaaatgta actcctccaa agttgttgga
     3001 agattcaagg cttgatagaa acggatgtat ttttccaatt cttctttcgg acggttttcc
     3061 aagaagagct gggtcaaggt cccataagcc actttttcac catgtgtcaa atggtgaatg
     3121 tctccctcca aggcggtgaa tccattgtgt atcgcatgcg ccgcagccaa acctgcactt
     3181 tcaaatccta aaccacttag caaggtattg gcttcaacaa tattctctaa agcagctgtc
     3241 acaaccttgg cttcacagct ggccatggct tgaagtccgt attcaaagag tgtttgttca
     3301 caggtttgtg caatagcgat accagcaagt gtctgacctc ctcctgccat tgttgttcca
     3361 ttgctttgta aaatagcacg cgcttctacc cacgtcgcca agccatctgc aataccagaa
     3421 gccaaaagac gtggcggtgc ttgacaaata atcgctgtat ctaccaagac aagatctgga
     3481 tttttcttat agaaaatata gcgttcaaac gccccttctt cagaataaat gacagataaa
     3541 gcagatgtcg gagcatctgt tgaagcaatt gttggagcaa tgacaactgg cactcctagt
     3601 aaatcagcaa tcgccttggc tgagtcaatc gtcttaccac cacctagacc gattacgacg
     3661 tcactagcct gttcttttcc gatttctacg acgcgctgga tttccttatc agatgcttct
     3721 ccattaaagg caacacgata gacttgcatc ccttcttcaa cgagatagga caaaaacttc
     3781 tcaccgacaa tcccatatac taaatcatca caaagaatca aaggctttgt tcccaatttt
     3841 ccgatagctt ctgcaccttg gaaaaggaca tgtttacctt gaatatagcg agatggactt
     3901 gcaaatactt tcataagaat tcctccttga aataatagat attgttatat tgagcaataa
     3961 acgacagtta gcattgccga aagtaagagg tatgagcctg cattttaaat attgctattg
     4021 tacagcgatg cctactagca acgtgtcgag ccatcttctc ccatctctag tgcaatttcc
     4081 tttaaaactg cctccagcga caatagattg ctagagttgg cagacaaaag caactgttga
     4141 caccacttca gcctggcttg aaattcttct gattcctgtg tcaaatagga cagaagcaag
     4201 tagaggacaa catttcgttt caatggctca tccaccaaat cctctcttct ttcgctgagc
     4261 tttgattcta tttgttgaat cacgtcccaa gcatcactag gcaggtctaa tgttacacaa
     4321 gtagaaagaa cttctaagac atcttgtact tcttttgata atatccgagc ttcaaaatcc
     4381 tctatagctt gaaggctacc tcttaataaa acgctttcaa aacttctgat aagaatatca
     4441 tctaccaagc tgaatagatg atttcttttt acttctttta tggctgctag ataaagaaga
     4501 gtattgacca ctccatttat caactccgag gtaggttgtg tcaataattg ctccctatcc
     4561 gctataatta gctggatgga ctcattaaac aatggtcgct ctcttttctt attttccact
     4621 gatacccaag gtagagtggt aaacggtgaa gtcggtataa gaacagctgg caagtctagt
     4681 aaatctgcaa cagcctttgt acaagctgct acagaactat taccaatgcc aataatatgg
     4741 tctgcacgat gtcggaaacc aacttcccca cattcttcaa ccgagttctg gtcccactcc
     4801 tccatataga ctattttaac aataagtcca tgacaagtta aaactttcac aaaactttct
     4861 acagtcgtat tatactcctg ttttgcacat aaaacaaggg ggcgatgacc tattttcaaa
     4921 atgtcaatcg cacaagtgtc taaaagatga tttccttgga tagtgcgtga aagacctgag
     4981 aattgtttca tagtgccccc ttattttata atatagagat gtttagatag tataccttcc
     5041 atgaatggca gaccaatcat ctgcaaaatc atttaccgcc ttttcaatgg atggcataga
     5101 aaaggctgct tcaaatatat ctgcacctgc cgtaatagcc tgcgccccat ttgcaaatgc
     5161 ttggtttact tgctccacat ttttgaatga cgccgctaaa attttacttt ccgaacactc
     5221 cctatcaatc gcttctgata actgagcgat gaccgcgttc gaatcaatat tcagattgac
     5281 catgcgattg tagtacggcg ctaagtaatc tgcacccgct tcaatagcta acaagccctg
     5341 aaaaacggta taaatcgctg ttgctgtaat ctgataacct tgcgctttca atgttttcat
     5401 agcagccaaa ccagcaggcg ttaccggaac cttaatatag acattttccg gtgccaattc
     5461 acgaattttt ttagcgtctg ccaaaatccc ttcataatcc tttgccacaa cttgcacatg
     5521 tagtgaagca tttggaccga tgatgtcacg gataaggtgc aaacgttcaa aaaagtcaat
     5581 gtcaccttct ttcttcgcaa tcgttgggtt tgaggtcacc cccgcaaggg gtagaacctc
     5641 agcccatttt cgtatttcct ctatatttaa ggtgtccagc ataaattcca taataataac
     5701 ctcttttaca atgtatgttc tgtacgacca atgatgtcgt cttgtgttgc tctcgacaat
     5761 acattgaaga atgctgaata acctgctaca cggacaatca aatcacggtg tttttcagga
     5821 tgtagttgtg catcaatcaa ggtttctcga gagacaacat tgtactgaat atgatagcca
     5881 tgcaagcggt taaagaatgt ccgcaagagg gcaattaatt tttgtttgtc ttcttctttg
     5941 gcaagtgttt gtggattgac cttctgattg agcagaacgc ctccaacaat ttcatgtgtt
     6001 ggtaatttgg caactgattt caaaacggat gtcggtccat ttttatccat attatgtgat
     6061 ggagaacaac cttctgccaa cggtgtacct gcatttcgac catctggagt tgccaaggta
     6121 ccacgcccct gtccaacgtt ggctgaaatg gatgatgtac ctgaataacg gataccacca
     6181 atcggaccac gaccaaagcg agtgtttgga tatttggcaa tctcatcgat ataaatatca
     6241 tacgctgctg ttaccaattg gtctgcataa tcatcatcgt taccatattt tggtgcgtcc
     6301 tcaatcaaca tttcttggat ttccttacca cgctcaccag catagtctgt ttccaaagca
     6361 tgccataatt cttctggtgt taatcgtcct tcttcaaaga ctaatttttt gattgctgct
     6421 agagaatcag ataaattggc aatgccaacc tgcagaccag aaatgtaatc gtaaatcgct
     6481 ccaccttctt tcaagtgctt accacgaccg atacagtcat ctgtcagagc tgagcagaga
     6541 atgtctggta cttctctttc taaagcaatg tcaattgcat tttcaacgat gacactcatc
     6601 cgtgttaaat ggcgaagcgt cttttcccat gccgtttcaa gctcctcaaa ggatttcata
     6661 tctttgaagt gaccaaaggc tggtgcaaac cgtttgcctg atgcaggatc gataccatca
     6721 ttcatggtaa tcaataaaac tttcgggaag ttcatatagc tcatacctgt acaacggtat
     6781 ccccatttac caggaacagc cgtttctaca cagccaatcg cactgtagtc ataggcatct
     6841 tcttccaaga cacctttctc aataaaggat ggaatgataa tttcatcgtt gttaaaggca
     6901 ggcataccaa aaccaagttt catgacttca atacattcat tcatgaaacg agcatctagg
     6961 cctgcatgat agcgaacagt caagtttggc tgtggcaggt gtgtttgggc aacagatttc
     7021 aatactaagt aagaaagtgg attgacagca tccttcttat cacgtgtttg tccaccaatt
     7081 gttacatttt ggtatagtgg actaccagca gatgagaagg tatgtgattg actacgaacc
     7141 ttgttgatag taatggtctt aatccacaag ttagtcaagc gttcgacgat gctgtcttcc
     7201 gtttcacgtc ctgcttctaa atcagcattc acatacggat acatgtattg gtcgaaacgt
     7261 ccataggata gagaatgtcc attcgactcg atttgcaaga tacactggat aaaccagaca
     7321 gattgcactg cctctgcaaa tgtttcagca ggttcatacg gcaccttcgc acaaatccgt
     7381 gcaatctcca gtagttcttg acggcgttga gctgttggtg ctttctctgc caattcagta
     7441 gccaaggcga caaaacgatt tgcgtatgct ttcaccgcat caatgatgat aaagattgag
     7501 tcatagaaat gatatttatc aatacttgca ggatccgtca aatcgagatt agcctttgct
     7561 gcacgaactc gctcctcaaa accacgcaaa ccttgttcca ataccttttg gtaattgaca
     7621 gccaagtggg catcgccaga gttcatctta ccttccatac caaagaagcc agtttccata
     7681 taaacttgaa cttcttctgg aagcaagaca cctgcacgtg aacgaagatt atttttttcc
     7741 cagaatggag cgatgctgcg caactgctcc ttggtttcct cggtaatata gaagacgtcc
     7801 ccatcccgtt tttcgaataa atccaattca ttcaatacaa actccaaggt atattctggg
     7861 aagatgggag catctttatt tgaagaagct tggttacctg caatcagact ttcttcttca
     7921 atataaagcg tcatgttctc caatatttcc ttgagcatat aggccctttt taatacattg
     7981 ggcttctctc tatgttcttg ataggctttt gttgctaaaa cagcccgttc cgcgtcaata
     8041 tagggcttct tatcaaggac atcttctctg tatttgttca tccgatctgt cagacttcca
     8101 aaatactcag ttttaatgct agtgccagct acttcagtca ctgttttcat agttttaccc
     8161 tttctttcga aacttaattt tgtttcgttt gtaaattaag tatatcctgt aataggggtt
     8221 attgtcaatt gatgctagtg agcgctaaga tttccgaagc cggctgcaca tttgtgcaac
     8281 tcttttgtct gacatcattg actaaactgg ttctttcgtt tcactttcat aggcaatctt
     8341 atcttggatt ttgaagaatg ggaaataaac aatagttgag acagctaaaa taatgatttg
     8401 aacaactgca ccttgccaac cacccaccat aaaaccagaa atgattgctg gagtagacca
     8461 tggtagggtc acacctgaaa atggttgcat aaagcctatt gagattgcac cgtagacaat
     8521 gaaagccgct aagatcggta ccaaaacaaa tggtaagaac attacaggat tcatcacaat
     8581 tggaaaacca aagacgactg gttcatttac gttaaagagt gcaggaaagg ccgctacctt
     8641 accaagagcc ttatattgtt ttgatttagc ggcaaatagc attgcaaaaa caataccgaa
     8701 ggtaatacct gaacctgaca taatcaagaa actatctaag aattgttggg tcacgatgtg
     8761 ggtgccattt tccagagaca atttatctgc tgctaaaagg gccttattgg catcgaggtt
     8821 tgacaatagt aaagcagtaa cgacaccatt gacaactgac tggccatgta caccaaacca
     8881 ccagaggaag gaaatgaaga aagcaattcc aatcgcacct ggtaatgaac ctgtcaaacc
     8941 ttgtagtggc acttgaatca catcgtaaat catttcaatg aatgtaccac cgtttgtcgc
     9001 catcttggaa acaatataga caatcataga tagcaaaaag atgacaaaag ctggaatcat
     9061 agcttcaaac tgcttggcaa tagcttgcgg tacttgttca ggcatcttga taacaatatg
     9121 acgctgaata aaagtcgtat agatagcgcc cactaccaaa ccaataataa tcgcaccgat
     9181 aattccttga ccaccaaacc atacttttgc gatggcatca ccgattggtt ctccatcaac
     9241 tggaatataa gatgatttca agaggataaa gaatgaagac aaggacagta cgcccgcagg
     9301 gagaggctca actccactat tttttgcgta agaataacca atcgcaaaac aagaaatcaa
     9361 gcccataatc gcaaaggttc cgctatagac ttgcataaac ggttcagtcc attccgctcc
     9421 aaatatagaa gctattgcag catttaagcc ttcaaaaggc aactgcccca aaattaagaa
     9481 aatactacca actactgtta aaggtaagat agccaacata ccatctttta gagcgatgat
     9541 ccctttcata ttcacaaatt tcatgattgg gacaataatt ttttgtgtat caattttgga
     9601 catgaccata ctcctttatg aaaccatgct gagtgccaat tgaagaactt ttttcccgtc
     9661 caacatcccg tagtctgcca ttggaatcac ggcaataggg acttgctttt catcacagag
     9721 cgcttttgac ttatcaagcg tatatgctac ttgtggtccc agtaaagcta catcgatttc
     9781 gtcaaggtaa tctgcaattt tcccttggga atgcgcgtcg atttctactt cgacacctgc
     9841 gtctgctgct gcgatcttca tgttgtttac caacatgcct gtagaaaaac cagcggcaca
     9901 aaatagagcg attttaacca tttcggtttc ctcctaaata taattttttt gttttagcca
     9961 acttttttta gttctttccg caaatcaatg atttctttaa tcaaattgat ctctgtaata
    10021 gatgtcatca aatgatcttg cgaatggaca aatagtgctg taatatcaga ttttgttccc
    10081 ccagcttctt atgctaagaa ttttgtctgc atattgtgag cttctaataa tgctgcatct
    10141 gccaattcta attcctcttc tgctcgctct tcttcacctg ctttgacaag cgacaaagct
    10201 tggtaggcgt gacttttcgc atctccagca taaataatca atcccatgat caattgatct
    10261 gcaacaatca tttccatttc tttttcctcc gatgtgtttt atttgtaagt tattatattt
    10321 ctttcgtaag taa
//
LOCUS       DASGCC010000070        10077 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.070, whole genome shotgun sequence.
ACCESSION   DASGCC010000070 DASGCC010000000
VERSION     DASGCC010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10077
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.070"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            1..664
                     /locus_tag="U1404_001259"
                     /pseudo
     CDS             1..664
                     /locus_tag="U1404_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611222.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(665..1465)
                     /locus_tag="U1404_001260"
     CDS             complement(665..1465)
                     /locus_tag="U1404_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5348218.1"
                     /translation="MSTILSIQNIHKTFEAGTVNENHVLRGLNLDVKEGDFISIIGGN
                     GAGKSTFMNSLAGALTVDSGDILLEGKSIKHVSAAKRSKDISRVFQDPKMGTASRLTI
                     EENMAIAYRRGLSRGLGWGVKDSERAILKEALKELGLGLENRMKVDTQFLSGGQRQAL
                     TLMMASLVKPKVLLLDEHTAALDPKNSDMVMELTKKIVESHQLTALMITHNMENAIEY
                     GNRLVMLHRGQIVVDVEGEEKKNLTVQNLMDLFYKNSGEKLTDDEMIL"
     gene            complement(1475..2368)
                     /locus_tag="U1404_001261"
     CDS             complement(1475..2368)
                     /locus_tag="U1404_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348219.1"
                     /translation="MDIILSSISQGLLWSVMAIGVYLTFRILDIADMTAEGSYPLGAA
                     VCATGIVNGVNPLLATFMAMVAGMGAGLISGLLHTKLKIPALLTGIVTLTGLYSINLK
                     ILGKANVALLKQETLVTQLQDFGLTKTNAVLVIGLVFVLAVVGLLTLLLNTQIGLAIR
                     STGDNIPMSEANGINVDNMKIYGYMLSNGLIALCGALLTQNNGYADLNSGTGTIVIGL
                     ASVIIAEVILRNLRLGWRLLSVVLGAVVYRLIILAILEIPSMDADLVKLFSAILLATV
                     LYVPELQKKLNIRRPKLNGNA"
     gene            complement(2423..3397)
                     /locus_tag="U1404_001262"
     CDS             complement(2423..3397)
                     /locus_tag="U1404_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5348220.1"
                     /translation="MYYKLVKKLATISVASMGLLTLAACSSSSEQASSDVVKVGVLQY
                     MEHESLTAAREGFVAELEANGYKEGEKLVLDYQNAQGDQANLQTISEQLIDGNDIVLA
                     IATPSAQSLATVSNETPIVFTAVTDPLSAGLVESIEKPGGLLTGTSDQAPIDKQVELL
                     GQAVPDAKTVGILYTTSERNSEVQVEQAKELLEKAGYKVVVKGITSSNEVQDATTSLM
                     KDVDALFIPTDNTVASTMTMIGELSVEHKVPVIGGSTDMVDEGGLLTYGTNYEALGRQ
                     TAKMAIKIIEGANVSETAVEYPETVSLHVNEEMAQKLGIDTSKLAVSE"
     gene            complement(3421..4380)
                     /locus_tag="U1404_001263"
     CDS             complement(3421..4380)
                     /locus_tag="U1404_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5348221.1"
                     /translation="MGFKKIILSSVALLSAVTLAACSSNSSDSSSVNVGIIQYAEHEA
                     LSSAREGFVEVLEEAGYKEGENLTIDLQNAQGDQANLQTMVEKLAGKNDLNFAIATPA
                     AQAMLNADSETSSVFTAVTDPVEAGLVESLEKPGGTMTGSTDATDVEGQIEMLLKVVP
                     TAKTVGIFYNSSEVNSEVQAEQAKKALEAKGVKVEVTTVTTTNDVQQAITSLAGKVDA
                     IYLPTDNTVASTASTIGDILKEAKVPAMGSDAAVIDAALFTYGVDYHAIGVQAGELAV
                     KILKGEKPADLAVEKPNTAAITVNEEMAKAVGIDAATIEALEE"
     gene            complement(5121..6122)
                     /gene="lacD"
                     /locus_tag="U1404_001264"
     CDS             complement(5121..6122)
                     /gene="lacD"
                     /locus_tag="U1404_001264"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5348222.1"
                     /translation="MTKLQLSQAKFNHMTRLSNSDQVIAALAIDQRGALKRLLAAAAG
                     GGEFGDDILIDFKKVISSDLTPYASSILLDAEYGVPASELRHADCGFIAAYEKTGYDA
                     STPGRLPDLLPNWSAKRIKELGADAVKILLYYDVDDKPEINDIKHAWVERIGSECIAE
                     DIPYFVEILTYDASDMDVTSREYAALKPHKVNGAMREFSKSRYNADVLKVEVPVNMNF
                     VEGYTDEEPVYTVEEAKAFFKEQTDSTHLPFIYLSAGVSAKLFQETLVFAKEAGSSFN
                     GVLCGRATWKDAVAIFASEGEEAAKAWLADQGRRNVEELNEVLATTACPWTEKVEVK"
     gene            complement(6146..7291)
                     /gene="nagA"
                     /locus_tag="U1404_001265"
     CDS             complement(6146..7291)
                     /gene="nagA"
                     /locus_tag="U1404_001265"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM5348223.1"
                     /translation="MTVFIKAKSIILPESEVESAYLEITDKGQFGRIVTEKPEGEIVD
                     YSDFHLAPGLVDTHIHGYASHDVMDNDFEGIKVISEGLLSCGVTSWLPTTLTDTTENL
                     DAVCETIGTYAGQETGAKIQGIFLEGPFFIEKYKGAQNPKYMSDPSIEKLDNWHSLSK
                     GLVNKIAIAPEREGVKEFIEFANSKAIHTALAHSDATYTQAEAAVEAGANIFVHVYNG
                     MSGLHHREPGMVGAALNLKNVYAEMICDGHHVHPAAAEIVVKARGAEETVLITDCMRA
                     GGMGEGESRLGEFEVVVKDGTARLKESGSLAGSILELIEAVQNVVKWGLVSLPDALRM
                     ASLAPARSVNIDHICGRIAEGRAADFIVVDDAGRLQATYLDGVKRFG"
     gene            complement(7798..8628)
                     /locus_tag="U1404_001266"
     CDS             complement(7798..8628)
                     /locus_tag="U1404_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000759190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5348224.1"
                     /translation="MKKMMLGALALVTSLTLAACGSNDLATKSDNWTAYESEKSVTIG
                     FDKTFVPMGFEQTDGSYTGFDIDLANAVFEKYGITVKWQPIDWDLKETELNNGNIDLI
                     WNGYSITDERKEKVLFTNPYMDNQQVLVTKKSSNISQVSDMKDKILGAQAGSSGYSVF
                     ESQPAILKDIVQNNDASQYATFNEALIDLKNDRIDGLLIDRVYANYYLQQEGIIADYN
                     IIDAGFENEAFAVGARKSDTTLVENINKAFAELYKEGKFQEISQKWFGEDVATDTVKK
                     "
     gene            complement(8655..9287)
                     /locus_tag="U1404_001267"
     CDS             complement(8655..9287)
                     /locus_tag="U1404_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5348225.1"
                     /translation="MLELRNLSKRFEDKQIFSNYDLVIPEGKIVAIVGQSGGGKTTLL
                     RMLAGLETIDSGTLMYNGQELPLEELGKRHLLGFVFQDFQLFPHLSVLENLVLSPMKT
                     QNMSRSEAEDKALKLLDTLGLANHASAYPFSLSGGQKQRVALARAMMIDPEIIGYDEP
                     TSALDPELRKEVEKLILENRATGITQIVVTHDMQFAENIADEIIKIEPKH"
     gene            complement(9297..9938)
                     /locus_tag="U1404_001268"
     CDS             complement(9297..9938)
                     /locus_tag="U1404_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004228788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5348226.1"
                     /translation="MDYVLEVLPSLLNGAAVSLQVFFLVLMLSLPLGAVFAFLMQIKF
                     KPLQWLLHFYVLIMRGTPLLLQLIFVYYVLPSVGITFDRMPAVILAFTLNYAAYFSEI
                     FRGGIEAIPKGQYEAAKVLKFTPVQTIRYIVLPQVVKIVLPSVFNEVMTLVKDTSLVY
                     ALGVSDLLLASRTAANRDASLAPMFIAGAIYLLMIGAVTLISKQVEKKFDYYR"
BASE COUNT         2987 a         2261 c         1815 g         3014 t
ORIGIN      
        1 gagataaatt aaagaactat cttgaaactc atccagatgc ttatttgact gaaatagctt
       61 ctgaatttga ctgtcatcca acagctattc attacgccct caaagctatg ggatatactc
      121 gaaaaaaaag agctgtacct actatgaaca agaccctgaa aaagtagaac agttccttaa
      181 agaattgaat aacttgagcc acctgactcc tgtttatatt gacgagacag ggtttgagac
      241 atattttcat cgagaatatg gtcgctcttt gaaaggtcag ttgataaaag gtaaggtctc
      301 tggaagaaga taccagcgga tatctttagt ggcaggtctc ataaatggtg tgcttatagc
      361 cccgatgaca tacaaagata ctatgactag cgactttttc gaagcttggt tcaaaatatt
      421 cttactaccc actttaggta aaccatctgt tatcatcatg gacaatgcaa agtttcatag
      481 gatgagtaag ctaaaagatt tatgcgagga gcagggacat agacttttac cacttcctcc
      541 ttactcaccg gaatataatc ccattgagaa aatatgggtt cacatcaaaa aacacctcag
      601 aagagtattg ccaaattgcg atacttttct tgaggcactt tcgtcctact cttgtttcag
      661 ttgactataa aatcatctca tcgtcagtta gcttttcacc gctgtttttg tagaaaaggt
      721 ccatcaagtt ttgaacagtc aagttcttct tctcttctcc ttctacatcg acaacaatct
      781 gaccacggtg caacatgacc aaacgattac catattcaat ggcgttttcc atattatgcg
      841 taatcatcag agctgtcaac tggtggctct cgacaatctt cttagtcaat tccataacca
      901 tatcgctgtt ttttggatca agggcagcag tgtgttcgtc caggagcaga acttttggtt
      961 taaccagcga agccatcatc aaggtcagag cctgacgttg accacctgaa agaaattgcg
     1021 tgtccacctt catacggttt tctagtccca ggccaagctc tttcaaggct tccttaagaa
     1081 tagcacgttc actatccttc acaccccagc caagaccacg tgacaatcca cgacgatagg
     1141 caatagccat gttttcttca atggtcaatc gagaagctgt tcccatcttt ggatcttgaa
     1201 atactcgact aatgtcctta gagcgtttgg cagctgatac atgcttaatg gatttacctt
     1261 caagcaaaat atcgcccgaa tcaaccgtca aggcacctgc aagtgagttc atgaaagttg
     1321 atttaccagc accattacca ccgatgatag agataaaatc accttctttt acatctaagt
     1381 tcaacccacg aaggacatgg ttctcattaa ctgttccagc ttcgaaggtt ttatgaatat
     1441 tttggattga taaaattgta gacataactt cctcctaagc atttccattc aattttggac
     1501 gacgaatatt caatttcttc tgcaattctg gcacatagag aacggttgcc agaaggatag
     1561 ctgagaagag tttaacaagg tctgcatcca tacttggaat ttccaaaatc gctaagataa
     1621 tcaaacggta aacaactgca ccgagaacaa ccgataggag tctccaaccc aagcgtaagt
     1681 tacgcaagat aacttctgca ataatgacag atgctagacc gataacaatg gtaccagtac
     1741 ctgagttgag atctgcatag ccattattct gagtaagaag agcaccacaa agggcaatta
     1801 gaccattcga caacatatag ccgtagattt tcatattgtc tacattgata ccattggcct
     1861 cactcattgg aatattatcc cctgttgaac gaatagctag accaatttgt gtattgagca
     1921 agagcgtcaa taagcctaca actgctagta caaagaccag accaatcacc aaaacagcat
     1981 ttgtttttgt caaaccgaaa tcctgcaatt gcgtcaccag tgtttcttgt ttgagcaggg
     2041 ctacgttggc tttgcctaag attttcaagt tgatagagta gagacctgtc aaggttacaa
     2101 taccggtcaa aagggctgga atttttagtt ttgtatgaag taaaccagaa atcaagcctg
     2161 cacccatacc agctaccata gccataaagg ttgccagcaa gggattcact ccgttcacaa
     2221 tccctgtcgc acaaacagca gctccaagcg gataagatcc ctcagctgtc atatcagcaa
     2281 tatctaaaat acgaaacgtc aagtaaacac caatcgccat aactgaccaa agcaagcctt
     2341 gcgagatact tgataaaata atatccacga ttttctcctt tttctaaatt cgtagtcaat
     2401 actaggttct atcttaccga tcttattcag atacagcaag cttagaagta tcgataccta
     2461 atttctgagc catttcttca ttaacgtgaa gactgacggt ctctgggtat tctactgctg
     2521 tttctgacac attggctcct tcgataatct taatagccat ttttgcagtt tgacgaccta
     2581 aagcttcata gttggtaccg taagtcaaaa gacctccttc atccaccatg tccgttgaac
     2641 caccgattac tggaacctta tgctccacag ataattcacc gatcatggtc atggttgaag
     2701 cgacagtatt gtcggttgga ataaagagag catctacatc cttcatcaag ctagttgtcg
     2761 catcttggac ttcatttgaa gatgtgattc cttttactac taccttataa cctgcttttt
     2821 ctagcaattc cttagcttgc tctacctgaa cttctgaatt acgttcgcta gtagtgtaca
     2881 aaataccaac ggtcttagca tctggaacag cttgacctag caattcaact tgtttatcaa
     2941 ttggagcttg gtcagatgta cctgtcaaaa gtccacctgg tttttcaatg gattctacca
     3001 agccagctga caagggatct gtaaccgcag taaagacaat cggcgtttca ttagacacag
     3061 tcgctaaact ctgggcagac ggcgtagcga ttgccaagac aatatcattt ccatcgatta
     3121 attgttctga aatggtttga aggttagctt gatcgccttg ggcattttga taatccaaaa
     3181 ccaatttttc accctcttta taaccatttg cttctaattc cgccacaaaa ccctcacggg
     3241 cagctgtcaa tgattcatgc tccatatatt ggagaactcc aactttgacc acatctgagg
     3301 aagcttgttc tgatgatgag gaacaagctg caagtgttag caaacccata cttgctactg
     3361 aaatagttgc caattttttt actagcttat aatacataaa cgtttcttct cctaaatata
     3421 ttactcttct aatgcttcta tagtcgctgc atcaatacca acagctttag ccatttcttc
     3481 attgacggta atagctgctg tatttggttt ttcaactgct aagtcagcag gcttttcacc
     3541 cttcaaaatc ttcacagcca attcaccagc ttgaacaccg atagcatggt agtcgacacc
     3601 gtaggtaaat agagctgcgt caataactgc cgcgtcactt cccatagctg gaacttttgc
     3661 ttcttttaaa atatcaccga ttgttgaagc tgtagaagca actgtgttat cagttggaag
     3721 atagatagca tcgacttttc ctgcaagtga agtaatagct tgctgaacat catttgtcgt
     3781 cgtaactgtt gtcacttcta cttttacacc ttttgcttcg agtgcttttt tagcctgctc
     3841 agcttgaact tctgagttta cctcgctaga attgtagaaa ataccgacag tcttcgcagt
     3901 tggtacaact ttgagcaaca tctcgatttg accttccaca tcagttgcat cagtcgatcc
     3961 cgtcatggtc ccacctggtt tttccaatga ttcaaccaaa cctgcttcaa ctggatctgt
     4021 gacagctgtg aatacacttg atgtttcact atctgcatta agcatggctt gggctgccgg
     4081 tgttgcgatg gcaaagttaa gatcattttt tcctgccaat ttctcaacca ttgtctgtaa
     4141 gtttgcttga tcaccttggg cattttgcaa atcaatcgtc agattttcac cttccttgta
     4201 gcctgcttct tcgagcacct ctacaaagcc ttcacgagct gagctcaacg cttcatgttc
     4261 agcatattga ataataccaa cattgactga acttgaatct gacgaattgg aactgcatgc
     4321 agcaagcgtt actgctgaca aaagtgctac tgaactaagt ataatttttt taaatcccat
     4381 gattattctc cttttataaa tataatagca aacaagaaag gaccgcttag actacactct
     4441 aaacggtcct tatatttcat ctgtatagga aaacagaatg aattatccgt gccatttaga
     4501 tgtatcatct atgaggcaca tgtcaaaata gctacagcca catagataca aactttacgt
     4561 tcccgtgttt gcatccatgt ttaccatgtc tacaaacact atctaaaata gccgtagaaa
     4621 taagtatgat tagctgaatg attttgacac atttgtaaca tctctgtttc cctttctcat
     4681 ttatttgtaa ctatcataac tgttttcaaa ttatttgtca ataggaaatt gcgtaaattt
     4741 tcagattttt caagtttttt cgaatttttc taaaaatagc cccctatatt attagctata
     4801 aaacgacctg tcatcatgtt tatgtagcct tttagtttac ttttagtact tgctccaact
     4861 atttcacaaa tagtcagagg ttggaaataa ggggaacaag gtttgcgtca acaaccgcag
     4921 ctataactca atttctagca ttgacttgaa tcagtcccct agattgcttg cacagtaaat
     4981 ggactgttca aggtgagaga tataagagcg gattgcaaaa tcaggtcaac aacgactgat
     5041 tttgattttc gaagagtata aatgactata tttgatgtaa caaaaaagtc tgaacctaag
     5101 cccagaccct actaaaacaa ttattttact tcaacttttt cagtccaagg acacgctgta
     5161 gttgctagaa cctcgtttag ttcttctacg ttgcggcggc cttgatccgc caaccaagct
     5221 ttggctgctt cttcaccctc gcttgcaaag atggctactg catccttcca agtcgcccga
     5281 ccacaaagaa caccattaaa gcttgaacca gcttctttgg caaagacaag ggtttcttgg
     5341 aaaagtttag cagatacgcc agcgctcaaa taaatgaatg gcaagtgagt gctatctgtt
     5401 tgttccttga agaaggcctt agcttcctca actgtataga ctggctcttc atctgtgtaa
     5461 ccttctacaa agttcatatt gacaggtact tcaaccttga gcacgtcggc attataacgt
     5521 gacttgctaa attcacgcat ggcaccattg accttgtgtg gtttgagggc tgcgtattca
     5581 cgagaagtca catccatatc gctggcatca taagtcaaga tttcgacgaa gtaaggaata
     5641 tcttctgcga tacactcact accaatgcgt tctacccaag catgcttaat gtcgttgatt
     5701 tctggcttgt catctacatc atagtaaagc aagattttta cggcatccgc ccccaattct
     5761 ttgatacgtt tggctgacca atttggcaaa aggtctggca aacgacctgg tgtggacgca
     5821 tcataacctg ttttttcata agctgcaatg aaaccgcaat ctgcatggcg caattctgaa
     5881 gctggaacac cgtattccgc atccaagaga atggagcttg catacggagt caaatcgctt
     5941 gagatgactt tcttgaagtc aatcaaaatg tcatctccaa attcgccacc acctgctgca
     6001 gcagcaagca ggcgtttcaa tgcaccacgt tggtcaatcg ccaaggccgc aatcacctga
     6061 tcgctgtttg acaagcgggt catgtgattg aattttgcct gagaaagttg taattttgtc
     6121 attagtttcc tcctaaggaa ttttattaac caaatcgttt cacgccatct agataggtcg
     6181 cttgtaagcg tcctgcatca tctacgacga taaagtctgc agctcggcct tctgcaatcc
     6241 gaccacaaat atggtcaata ttgacagagc gagctggtgc cagagaagcc atacgaaggg
     6301 catcaggtag ggacaccaag ccccatttca caacattctg cactgcttca atcaattcta
     6361 agatagaacc tgccaaacta ccactttctt ttaaacgagc agttccatct tttacaacaa
     6421 cttcaaattc accgaggcgg gactcccctt cacccatacc gccagctcgc atacagtccg
     6481 taatcaaaac agtttcctca gctccacgtg ctttgaccac gatttctgcc gcagctggat
     6541 gaacgtggtg tccatcacaa atcatttccg catagacatt ttttaaattc aaagcagcac
     6601 cgaccatacc tggttcacgg tgatgaagcc cactcatccc attgtaaaca tggacgaaga
     6661 tattggcacc agcttctact gccgcttccg cttgcgtata ggtcgcatcg ctgtgagcca
     6721 aggcagtatg aattgccttg ctgttagcaa actcgatgaa ttctttgacg ccttcacgtt
     6781 ctggagcaat agcaatttta ttgactaaac ctttagataa gctgtgccag ttgtccaact
     6841 tttcaatgga tggatcgctc atgtacttag gattttgtgc tcccttgtat ttttctataa
     6901 agaagggacc ttctaagaaa ataccttgaa tcttggcgcc tgtttcctgc cctgcataag
     6961 tcccaatcgt ttcacaaact gcatctaaat tttcagtcgt atccgttaat gtcgttggaa
     7021 gccaagaggt taccccacaa gacaagagac cttctgaaat taccttgatc ccttcaaaat
     7081 cattgtccat aacatcgtga gaagcgtagc cgtggatatg tgtatcaact agccctggtg
     7141 ctaaatgaaa gtcagaataa tcaacaatct ccccttcagg cttttcagtc acaatccgtc
     7201 caaactgacc cttgtcagta atttccaaat aggctgattc gacctcactc tctggtaaaa
     7261 taatagattt tgcttttata aatactgtca tattatctcc tttgttgata tatatactta
     7321 tcaaactggt tataaccata tactaaatat attgtagaac ttctattaga aaatgtcaag
     7381 taattaccat aactttataa gaaatggatg ctgtgagaag gtagaaaaag agttcgtcaa
     7441 caatttttcg ttttaagttg ttgagctgaa acagtctatc cccagacatc aatttatgtg
     7501 agctgactgc cgtcagctta tatctcccac tttaaaaggt ctcccagacc ttttaaactc
     7561 ccacccccgc atagctccaa cagtcagaat agtgactgtt taagccaatc aaccactgcg
     7621 ctgagatgtt gacacgaact ccgagaagtg gcgctgagct ttttgctcag cctcgtagaa
     7681 tcttaagtta atgatattgg tgtacacccc caccgttttc acgagttctt ttcattattc
     7741 tgtggatgag ggtgtaacca tcatggatgt cttgttcagt cacttttgct tacattatta
     7801 tttttttact gtgtcggttg caacatcctc accaaaccat ttttgggaga tttcttggaa
     7861 tttaccttct ttatataatt cagcaaacgc cttattaatg ttttcaacga gtgtcgtatc
     7921 tgatttacga gcaccgactg cgaaggcttc attttcaaaa cctgcatcaa tgatgttgta
     7981 atctgcgata attccctctt gttgcaagta ataatttgca tacacacggt caatcaaaag
     8041 gccatcaata cgatcgtttt tcaagtcaat caaggcttca ttgaaggtcg catactgact
     8101 tgcatcgtta ttttgaacaa tatctttcaa aatagctggt tgtgattcaa atactgaata
     8161 gccagatgaa cctgcttgcg cacctaaaat cttatccttc atatcagata cttggctaat
     8221 attggaagat tttttggtta caagaacttg ttggttatcc atgtagggat ttgtgaaaag
     8281 aactttttcc ttacgctcat ctgtaataga ataaccattc caaattaaat caatattccc
     8341 gttattcaat tcagtttctt tcaagtccca gtcaattggt tgccatttta cagtaattcc
     8401 atatttttca aagactgcat tagccaagtc aatatcaaaa cctgtgtaag aaccatctgt
     8461 ctgttcaaat cccattggga caaaggtctt atcaaagcca atcgtaacgg atttttcaga
     8521 ctcgtaggct gtccaattat cagacttagt agccaaatca ttggagccac aagcagcaag
     8581 agttaaagaa gttacaagag caagagctcc aagcatcatt tttttaatat tcatcatcat
     8641 atttgttcct tttcttagtg tttcggttca attttgatga tttcatctgc gatattctca
     8701 gcaaactgca tatcatgggt gaccacaatt tgcgtgattc cagtagccct attttcaaga
     8761 atcagtttct caacttcttt tcttaattca gggtctaggg ccgaagttgg ttcatcatag
     8821 ccgataatct caggatcaat catcatcgca cgcgccaagg ccacacgttg tttctgtcca
     8881 cccgataatg aaaatgggta ggcacttgcg tggttagcaa gtccaagagt atccaagagt
     8941 ttaagggcct tgtcttccgc ctctgaacgc gacatatttt gcgttttcat aggagagaga
     9001 accaagtttt ccaatacgga taggtgcggg aaaagctgga agtcctggaa gacaaagccc
     9061 agcaaatgtc gttttcccaa ctcctctaat ggcagttctt gaccattata catcaaagtt
     9121 cctgaatcaa tagtctctaa accagccaac atccgtaaaa gagttgtctt accaccgcca
     9181 gattgaccaa caatggcaac aattttccct tctggaatga ccaaatcata gttggagaaa
     9241 atctgtttat cttcaaagcg ttttgacaaa ttgcgtaact ctaacatgac ttcctcctat
     9301 ctataataat caaatttctt ttctacttgt ttagaaatca gtgttaccgc accgatcatc
     9361 aataggtata ttgcacctgc gataaacata ggcgccaagc tggcatcacg attggctgca
     9421 gtacgactag ccaacaacaa atcgctaacc ccaagcgcat agaccaaaga agtatccttt
     9481 accaaagtca tgacttcatt gaaaacactt ggtagaacaa ttttcacaac ctgtggtaag
     9541 acaatgtagc gaatggtctg aacaggggta aatttcaata ccttagcagc ttcatactga
     9601 ccttttggaa tagcttcaat accaccacgg aaaatttcag agaaataagc cgcatagttg
     9661 agcgtaaagg ccagaattac agcaggcatc cggtcaaatg taatacccac acttggtaag
     9721 acgtaataaa caaaaattaa ttgtaaaagc aagggggttc ctcgcataat taatacatag
     9781 aaatgcaata accattgtaa gggtttaaat ttaatctgca ttaaaaaagc gaaaacagct
     9841 cctaatggca aggataacat caatactaga aaaaatactt gcaaggagac tgcagcacca
     9901 tttagtagac tgggcagaac ttccaaaaca taatccatag agctctccta aaagaatgat
     9961 taggttctag tatatcaaaa aatatcctta atttcaaaga atttttcaga atttttaata
    10021 aatttaacaa aattttgtat attttttaaa cagtgcaaaa agaaggctgg aaatcca
//
LOCUS       DASGCC010000071        10053 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.071, whole genome shotgun sequence.
ACCESSION   DASGCC010000071 DASGCC010000000
VERSION     DASGCC010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10053
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.071"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            56..1846
                     /gene="dnaG"
                     /locus_tag="U1404_001269"
     CDS             56..1846
                     /gene="dnaG"
                     /locus_tag="U1404_001269"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM5348227.1"
                     /translation="MLSKDKITEIKQALNIVDVIGETVALTKAGRNYVGLCPFHGEKT
                     PSFNVIEDKQFYHCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQTDVTPSYHQ
                     EEKRVSPHQVLYDIHRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAP
                     AEQNILYQKLSGQYDEESLLNSGLFNPSENNIIYDAFQARIIFPLADEYGRIVAFSGR
                     IWTEENRNNKQLAKYKNSRSTAIFNKSYELYHLDKAKAVIKKQRETYLMEGFLDVIAA
                     HRVGIDNAVASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE
                     IVSLPDNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDK
                     IAPIIAKVSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTG
                     QSYLPPVQTIARITSLIRTENHLLYRMVEHPYILNEFRLREDFYFAMPELQAIYDMLK
                     KSGEITSFELSQLNDSAQQAWYRMQEERLPDEVSPHEIEELEIRRDKELLKKENQHLA
                     RKIREHSHVGNADIALDELQKLLDRRRQME"
     gene            1849..2967
                     /gene="rpoD"
                     /locus_tag="U1404_001270"
     CDS             1849..2967
                     /gene="rpoD"
                     /locus_tag="U1404_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEM5348228.1"
                     /translation="MTNKKDKKTEVTTFDVQVAEFIRNHKKQGSATDDEINDQLVIPF
                     TLDADGIDDLLQRIQDAGISIVDKEGNPSARAMQVEEEPELSDEELLGSTSAKVNDPV
                     RMYLKEIGVVPLLTNEEEQELALAVEAGDPEAKQRLAEANLRLVVSIAKRYVGRGMQF
                     LDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVET
                     INKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDS
                     HLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLED
                     VGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED"
     gene            3352..3675
                     /locus_tag="U1404_001271"
     CDS             3352..3675
                     /locus_tag="U1404_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEM5348229.1"
                     /translation="MTYTEDQIKDIQERIFHALEDVIDPELGIDIINLGLIYEIRFIE
                     GKAEIDMTLTTMGCPLADLITDQIHDVLKDVPEVTEVDVRLVWSPAWTVQKMSRYARI
                     ALGIK"
     gene            3856..4013
                     /locus_tag="U1404_001272"
                     /pseudo
     CDS             3856..4013
                     /locus_tag="U1404_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373723.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(4100..5230)
                     /locus_tag="U1404_001273"
                     /pseudo
     CDS             complement(4100..5230)
                     /locus_tag="U1404_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
     gene            5326..5649
                     /gene="tnpA"
                     /locus_tag="U1404_001274"
                     /pseudo
     CDS             5326..5649
                     /gene="tnpA"
                     /locus_tag="U1404_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373723.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(5789..6382)
                     /locus_tag="U1404_001275"
     CDS             complement(5789..6382)
                     /locus_tag="U1404_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEM5348230.1"
                     /translation="MYKFWQKTIQVLSILTLIGTAIFLFWLYKIGILNDQNVLSDLIK
                     SQGALGSLSFLAIQIIQVVFPIIPGGVTTVVGFLVFHFWWGFFLNYLGISIGSIILFW
                     LAHRYGKKFCLLFMSEDTFYKYESKIDNKRSYEIFFILCMLSPISPADIVVMITGLTS
                     MSYRKFIMITLLCRPFSVVAYSFFWIYGSQWLQQLLG"
     gene            6492..6839
                     /gene="ssrA"
                     /locus_tag="U1404_001276"
     tmRNA           6492..6839
                     /gene="ssrA"
                     /locus_tag="U1404_001276"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            6842..6929
                     /locus_tag="U1404_001277"
     tRNA            6842..6929
                     /locus_tag="U1404_001277"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6876..6878,aa:Ser,seq:gga)
     gene            7088..8089
                     /locus_tag="U1404_001278"
     CDS             7088..8089
                     /locus_tag="U1404_001278"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEM5348231.1"
                     /translation="MLNVNELVKTELHCHLDGSLSLGVIRQLAQMAKITIPAEDEALR
                     KLVSVHGKVDSLMAYLKLFDFVRPLLQTATALELAAYDLVRQAASDKVIYIEVRFAPE
                     LSTDQDLTILEAVSAVLVGLNRGQEDFGVLAKLLVCGLKQTNTNQTKELFSAIADLAP
                     KGLVGFDFAGNEADYPTEELRDIIQFTQSLGYPMTFHAGECGCVINVIQALELGIRRI
                     GHGTALTRNPEAIQAFVNSGATLEMCLTSNLQTGAADSIEYFPYRELVEAGANITINT
                     DNRTVSNTTLNREYQLFVEYFGTSKADFYRFNQNAIQASFASEGEKKVLLELLDQQY"
     gene            complement(8133..8915)
                     /locus_tag="U1404_001279"
     CDS             complement(8133..8915)
                     /locus_tag="U1404_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348232.1"
                     /translation="MFKKLLKYEFQSVGKWYLGIYIAAVVLSAVLGFWLQALALRTQA
                     GNTEPGGGEMVLLGTSFMTFGILIAALFLSTFVLVINRFRKNVYGRQGYLTMTLPVSS
                     YQIILSKLLASIVWYILAGITCLLSIGIILAVILAASEEAIMPEIQTFVQAIDWTVLF
                     SQIFYYLIEITTGILLIYFSISVGQLFKDHRFLFAILTYIGILIVTGVFSTFFVLSNL
                     GTAYSTPFSLYPSPVLALVNIILAFAYYFGTHFIMTKKLNLQ"
     gene            complement(8932..9639)
                     /locus_tag="U1404_001280"
     CDS             complement(8932..9639)
                     /locus_tag="U1404_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348233.1"
                     /translation="MSNAYTLVELQQVSKSYGGAVALNNVNLKLTAGKIIGLLGPNGS
                     GKTTMIKLINGLLQPEYGQVLINGRTPSPETKAIVSYLPDTTYLDEHMKVLEAITFFE
                     DFYADFDKERALHLLQDLGIDLNSRMKHLSKGNKEKVQLILVMSRQAQLYVLDEPIGG
                     VDPAARDYILKTIVNNYSPTASVIISTHLISDVEQILDEVIFLHYGSVIRHGNVDDLR
                     IESGESIDELFRQDFKA"
     gene            complement(9632..10006)
                     /locus_tag="U1404_001281"
     CDS             complement(9632..10006)
                     /locus_tag="U1404_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5348234.1"
                     /translation="MAWKFDNNIPIYIQISNTIKLQIVTNQLKSGDKLPTVRDLADIA
                     GVNPNTVQRALSDLETEGFVYSVRTTGRFVTDNQELITQTRLHLAQKELENFVNNMLE
                     LGFRHDELTSQLDDYLKGVTYE"
BASE COUNT         3160 a         1889 c         2092 g         2912 t
ORIGIN      
        1 actaagggga gagtgttcac tttttaaatt agctagtatg atatgaggag ggaatgtgct
       61 ttcaaaggat aaaattactg aaataaaaca agctctcaat atcgttgatg ttattggtga
      121 aacggttgct ttgactaagg ccggacgtaa ttatgtcggt ctttgccctt ttcatgggga
      181 gaaaacccca tctttcaatg tgattgaaga taagcagttc taccattgtt ttggatgtgg
      241 taagtccgga gatgtattca agtttgtcga agaagttcgt ggtgtttctt ttgcagatgc
      301 ggcagctatc ttagctgaga aggcagggtt tcaaacagat gtaactcctt cctatcatca
      361 agaggagaaa agggttagtc cgcatcaggt actgtatgat attcatcggg atgctgcaaa
      421 gttttatcat gcccttttga tgacaaccaa aatgggtgag gaagctagag cttatctaca
      481 ccaacgtggc ttgacagatg atgtcataaa aacattccag ctaggcttag ctcctgccga
      541 acagaatatt ctttaccaaa aactatcagg tcaatatgac gaagaaagtc tattgaattc
      601 gggtttgttc aatccaagtg agaataatat tatttatgac gcctttcaag cgaggattat
      661 tttccccttg gcggatgaat atggtcgaat tgtagctttt tcaggtcgga tttggaccga
      721 agaaaatcga aacaataaac aattagctaa gtataaaaac tctcgtagta ctgcgatttt
      781 caataaaagc tatgaattgt atcatttgga caaggctaaa gcggttatta agaagcaacg
      841 tgaaacctat ctcatggaag gttttctaga tgttattgct gctcatcgtg tagggattga
      901 taatgcagtg gcttccatgg gaacagcttt gacaagagag catgttgcac acctagctaa
      961 gttttgtaag aaaattgttc tgacttatga tggggataag gctggacagg ctgctaccat
     1021 gaaagcgttg gacgaactac aagattttca ggttgaaatc gtgagcttgc cagataatat
     1081 ggacccagat gaatttttgc agaaaaattc ggaagaagcc ttgcaacagg ttttaaccaa
     1141 gtcacgaatc agcgatgtag aatttttgat tcaatacttg aaacctgaaa atcctgacaa
     1201 tctacaaatg cagattgagt ttgtagataa gattgcacca attattgcca aagtatcatc
     1261 cattacagct caaaattctt atatttataa ggtggcggat ttactttctg actttgatta
     1321 taatcaggtg gaacaggcag taaatgctgt tcgtctgaac cagcgccagg agagaacaca
     1381 acaggtattt caatcacaga ctggtcagtc ttatttgcca ccagtccaaa cgattgctcg
     1441 tataacgagt cttattcgaa cagaaaacca tttactttat cggatggttg aacatcctta
     1501 tattctcaat gagttccgtt tacgagaaga tttttatttt gcgatgccag aattgcaagc
     1561 tatttatgat atgttaaaaa aatctgggga aattaccagt tttgaactat cacagttgaa
     1621 cgattccgct caacaggctt ggtatcgtat gcaggaagaa cgtttacctg atgaagtgtc
     1681 tccacacgaa atcgaagaat tagaaattcg gcgagacaag gaattgttaa agaaggagaa
     1741 ccagcaccta gcacggaaaa tccgtgaaca ttcccatgtg ggaaatgcag atattgccct
     1801 cgatgagttg caaaaactcc tcgatagaag aagacaaatg gagtaaatat gacaaataaa
     1861 aaagataaaa aaacagaagt aactactttt gatgtacaag ttgccgaatt tatccgtaac
     1921 cataaaaaac aaggttcagc tacagacgat gaaatcaatg accaactggt tattccattt
     1981 acgcttgatg ctgacggaat cgatgatttg ctccaacgta ttcaggacgc agggatttcg
     2041 attgtcgata aagaagggaa cccttctgct cgtgctatgc aggtagagga agaaccagaa
     2101 ttatctgatg aagaattgct cggaagcact tctgcaaaag tgaacgatcc agtccgcatg
     2161 tatttgaaag aaattggtgt tgtacctctt ttgaccaacg aggaagagca agaattggca
     2221 ttggcggtcg aagcaggtga cccagaagcg aaacaacgtt tggctgaagc caacttgcgt
     2281 ttggttgtat ccattgccaa acgctatgtc ggtcgtggta tgcagttcct tgacttgatt
     2341 caagaaggaa acatgggctt gatgaaggcc gttgataagt ttgactactc taaaggtttc
     2401 aaattttcaa cttatgcaac ctggtggatt cgtcaggcta tcactcgtgc cattgcggac
     2461 caagcgcgta caatccgtat ccctgttcac atggtagaaa ccattaacaa attggtccgt
     2521 gaacaacgca atctcttgca ggaattgggc caagatccaa ctcccgagca aatcgctgag
     2581 cgtatggata tgacgcctga gaaagttcgt gaaatcctca agattgcaca agagcctgtc
     2641 tcgctcgaga ccccaattgg tgaagaagat gatagtcatc ttggagattt tatcgaagac
     2701 gaggtcattg aaaatccagt tgattacaca actcgtgtcg ttcttcgtga acagttagat
     2761 gaggtattgg atactcttac tgaccgtgag gaaaacgtat tgcgtcttcg ttttggttta
     2821 gatgatggta aaatgcgcac gcttgaagat gttggcaaag tctttaacgt aacccgtgaa
     2881 cgcatccgcc aaatcgaagc caaagccctc cgtaaactcc gccacccatc ccgcagcaaa
     2941 ccactcagag attttattga ggattagaaa ggtactgcgt acctttctaa cgcctgccca
     3001 gaaataagaa agcaggctaa cccagtggtg ttttaacccg agcctagaaa taggaaagcg
     3061 aggctaatct ccgggggagg tgatcgacgt ttctcatatc attcgaccat aatgatgtga
     3121 gaaactagta agtcgtctag gcaattctat tgggaattgc cgttagttga gtagcttttc
     3181 aaagcactca actttggcga gttgaaccgc tcgctgaaaa caggaaacga gcgagatttt
     3241 aaccgctccc cttgaaatta gaaagggagc gtaacgtcca gtggactttt tgacacaaac
     3301 ttcgtttgtt tcttttctag tattgaactt gtgaaaaaga aagagagaaa aatgacgtac
     3361 acagaagatc aaattaaaga cattcaggag cgtatttttc atgctcttga agatgtgatt
     3421 gaccctgagc taggtattga tattatcaat ttagggctaa tttatgaaat ccgatttatt
     3481 gagggcaagg ctgaaattga tatgaccttg acgaccatgg gttgtccatt agctgatcta
     3541 attaccgatc aaattcatga tgtattgaag gatgtccctg aagtaacaga agtagatgtg
     3601 agactggttt ggtcaccagc ttggaccgtt caaaaaatga gtcgttatgc tcgaattgca
     3661 ttaggaatta aataaaaaaa caaaatggtt tcgaacgttt gaagccgttt ttttattatg
     3721 gcttcgagcc agtttttctc gtagagaaaa acaagaaagc caccagctat gctggtggct
     3781 gccaaggctt tgagtttcca tttctttttc ctgttataat ctaattgttc aggttagatc
     3841 aaggaggaaa aagaaatggc taaaaccagt tacagtttat cacatactaa atggatgtgc
     3901 tctatcacat agttttcaca cctaagtacc gtagaaaatc catttactac aaaataaggc
     3961 aggacttaat tgatattttc cgtcatctat gtcgatgcaa aggcgtggac atcacgtcat
     4021 acgcatgaaa aatttcttct ctccttttgt ccccggaaat aactgcttta aacttagtat
     4081 ctaccttttt acaagcacct tatccccgat ttccaaataa ttgtggcaaa taatcctcca
     4141 aatggacaga aatatagcgt tgtttgcggc ggtaactcaa tttctcctta gggaaggtca
     4201 tcatttgtaa gagatgaaga caagccttac gaatagcatt taaattgaaa gcagctcgtt
     4261 tatctaaggt ttggttctta tcttctcggt aaaccacatc taacaaccaa tgtaggctct
     4321 caaccgacca atgaccacga acaacttgag aaaaagtttg cacatcgccc ttgaaactaa
     4381 ggataaagta acggacctct tcagtgatga caccatcttt atcaatgata ttcttagtca
     4441 taccaatccc acgaagtttt ttccatttcg gatgtcgttg gctcagccat ttcacatcgt
     4501 gagaaaccca gtagtccctc acctcaatct gactgcgtgc cttttcaatg gtctgataat
     4561 gacagccttt ctctgtcaac gtagataaca atttggcgtc actaaaatag aggtcaatat
     4621 cctcatggag attgccttga tttcctttga ctgccaagca ataatcaccc ttaccgctga
     4681 taatcacatc cgcaatgtct gtctaggtgc ccatggcatc aatcgtgaca acactcttac
     4741 gaaggtctag ctgacacaag aggcgaggaa tggctgtgat ttcattactt ttatcctcaa
     4801 cagctacctg cccaaggcta atccgattac caccatcata agcagtgaca atatgagtag
     4861 gagattggtg tttccctcgg ttcccccgaa tcgtttttcc gtcaacggca atcaattttg
     4921 aaaaatcagt tgtttccgaa ctagcttcga aggacagttt cagttccttt aagaaatctg
     4981 gattgaccat actcacaaca cgttccaagg tgtcatgaga aggacaacca gcactcaagt
     5041 caacgtattc tctcaagaca gattcgttca tttctatgaa atcttccatc tctttccacg
     5101 tttcaacccc tgctaattga caagcgaaaa ccagaaacag aatggtagat agaggatatc
     5161 ggattttcca tgcttgacgg ctatcatact cttctttgtg ctcttctatg gataaaagaa
     5221 aatcaatcaa agtagttcac ctctattcta gtgtactact ttgattgata tttggttatg
     5281 atttccgctt tctgaaaacg attttttctt catgcgtttg gcgtggtgga aatcattgag
     5341 ggacacatga tgccagacca tgttcatatg cttgtcttga tatccccaaa actttcgatt
     5401 tccgatttta tgggatattt gaaaagtaaa agtgctctca tgatatttga taaacatgct
     5461 aatttaaaat ataagtatgg aaatcgaaag ttttgggcta gaggctacta tgtgagtatc
     5521 gttggactga acgaaaagac ggtagcgaaa tgtattcgcg agcaggagaa aaatgacatc
     5581 gcacttgata agttaagtgt taaagaatat gaagattcat tttcagatag tagttttaga
     5641 acaagataaa agcccgttgt tacgggcttt agtcaagtaa ttatagcact aacctgaacg
     5701 aagttcagcg aacgtcttta gacgtcgctg gagagaaacg gcttatagcc ggtgtacaag
     5761 ccacccgttt tcacgggtgg ttatgatttt atcctaacaa ttgctgcaac cattggctgc
     5821 catagatcca aaagaagcta taggccacaa ctgagaaagg gcgacaaagt aaagtaatca
     5881 taataaattt ccgatagctc atgcttgtta atccagtaat catcaccact atgtcagctg
     5941 gagaaatggg agaaagcatg caaagaataa agaaaatttc ataactacgt ttattatcaa
     6001 ttttgctttc atatttgtaa aacgtatctt cagacatgaa gaggagacaa aatttctttc
     6061 catagcgatg agccaaccag aaaaggatga tactaccgat tgaaattcca agataattga
     6121 gaaagaatcc ccaccaaaaa tgaaatacga ggaaacccac aacagtcgta acaccgcctg
     6181 gaataatcgg aaatacaact tgaataatct gaatagctaa aaaggagagg ctacctaaag
     6241 caccttggct tttgattaaa tcgcttaaga cattttggtc gttcaaaatg ccaatcttat
     6301 agagccaaaa cagaaaaata gcagtcccga taagggtcaa aatacttaat acttgaatgg
     6361 ttttttgcca aaatttatac atactttcat tttaccatat ttcaaaattt ttttaaattg
     6421 taaggaaaat gtaaaataat tttgctattt ataaaaaatt ctgctataat aattcctgta
     6481 tcaaatccta cggggttgtt acggattcga caggcattat gaggcttgtt ctgcaactca
     6541 tcggcagatg taaaaatgcc agttaaatat aactgcaaaa aatacaaaca cttacgcatt
     6601 agcagcttaa taacctgcct gcgtgaccag tcgcgaattg cttgtgtttg ctgattggtc
     6661 ttaaaatagc aagctacgtt gggattgagt caggcagttc caaaagagat ttactgactc
     6721 gcttggtcta ggtttgagtt atgtatcgag ttcaagttaa agcaagacat aacctatggt
     6781 tgtagacgaa taagttagca ggtgtttgga cgtgggttcg actcccacca gctccatata
     6841 tggaagatta ctcaagaggc tcaagaggcc gtgttggaaa cgcggtaggc gtgtaacagc
     6901 gtgcgtgggt tcgaatccca tgtcttccgt atgttattga agaacgactg atagtcgttc
     6961 tttttttgtc tgtgaatgat acaactgaaa aacaagtgaa agttcaggtt ttatggtaaa
     7021 attcttgttt ttcttcaaaa atatgatatg atagttaaca atataccaga cggaggttgt
     7081 gttaatagtg ttgaatgtaa atgaattggt caaaacagag ttgcattgtc atttggatgg
     7141 ctcattgtcc ctcggagtca ttcgacaatt ggcacagatg gctaagatta ctattcctgc
     7201 agaagatgaa gcattaagaa aattagttag tgttcatgga aaagttgata gtttaatggc
     7261 ttatttaaag ttatttgatt ttgttcgccc actcttacaa actgcaacag ctttagaatt
     7321 ggcagcctat gatcttgtac gacaagctgc aagtgataag gtcatttaca ttgaggttcg
     7381 ttttgcacct gaactgtcga cggatcaaga cttgactatt ttagaagcag tctcagcagt
     7441 tttagttgga ctaaacaggg gacaggaaga ttttggagtg cttgctaaac ttctggtttg
     7501 tggtttaaag caaacgaata cgaatcaaac gaaggaactc ttttcggcta ttgctgattt
     7561 ggcaccaaaa ggacttgtgg gatttgattt cgcaggaaat gaagcagact atcctacgga
     7621 agaacttcgg gatattattc aatttactca gtctttaggt tatcccatga ctttccatgc
     7681 cggagaatgt ggatgtgtaa tcaatgtgat tcaagctctt gaacttggga ttagaaggat
     7741 tggtcatggc acagcactta ctcgcaatcc tgaagctatc caagcttttg tcaatagcgg
     7801 agcaacactt gaaatgtgtc taacatcgaa tcttcaaact ggtgcagctg attcgattga
     7861 atattttcca tatcgtgagc tagttgaggc aggagcaaac atcacaatca acacagataa
     7921 tcgtaccgtt tctaatacta cacttaatag agaatatcag ttatttgtag aatattttgg
     7981 gactagcaag gctgattttt atcgcttcaa tcaaaatgct attcaggcaa gttttgccag
     8041 cgaaggagaa aagaaagttt tgttggaact cctagaccaa cagtattaag aaaaaagctc
     8101 tataccggtc gattagacca gtaaagagct ttttattgta gatttaattt ctttgtcata
     8161 atgaagtggg ttccaaagta gtaagcaaaa gctaggataa tattgactaa tgctaagact
     8221 ggacttggat agagagaaaa tggtgtagaa taagctgttc ctaggttact taggacaaag
     8281 aaagtgctaa atactccagt aacgatgaga atgccgatat aagtcaagat tgcaaagagg
     8341 aagcgatgat ccttgaataa ttgaccgaca gatatagaga agtagatcaa aaggatacca
     8401 gtggtaattt caattaaata atagaaaatc tgactgaata gaactgtcca gtcgatagct
     8461 tgaacaaaag tttgtatttc tggcataata gcttcttcgc ttgctgctag aatgactgca
     8521 aggatgattc caattgaaag taagcaagta atacctgcca agatatacca aacaatagag
     8581 gcaagtagtt tgcttaagat gatctgatag ctagataccg gcagggtcat agtgagataa
     8641 ccttgtcggc cataaacatt ttttctaaaa cggttgatta ctagaacaaa tgttgacaag
     8701 aagagtgcgg caatcaaaat accaaaagtc ataaaggatg ttcccaataa gaccatctct
     8761 ccaccgccag gttcagtatt tccagcctgt gtacggaggg ccaacgcttg tagccaaaaa
     8821 ccaagtactg ctgataggac cacagctgca atataaattc ccaaatacca tttacctacg
     8881 gattgaaatt cgtatttcaa taatttttta aacatagcaa tctccttcta actaagcctt
     8941 aaaatcttgg cggaagagtt cgtcaataga ttctccgctt tcaattcgca agtcatctac
     9001 attcccatgg cgaataacac ttccgtagtg taggaaaata acctcgtcca aaatttgctc
     9061 aacatctgaa attaagtgag tagagataat aacagaagca gtcggagagt agttgttgac
     9121 gatggttttt aaaatgtagt ctcgggcggc agggtcaaca ccaccaattg gctcatctaa
     9181 aacatacagc tgtgcttgac ggctcatcac cagaatgagc tggacttttt ccttattccc
     9241 cttagagaga tgtttcatac gactgtttaa atcaatgccc aaatcttgta aaagatggag
     9301 agcacgctcc ttatcaaaat cagcgtaaaa atcttcaaaa aatgtaattg cttcgagcac
     9361 tttcatatgt tcatcaagat aagtggtatc tgggagataa gatacaatcg ccttggtttc
     9421 tggcgatggt gtgcgaccat tgatcaatac ttgaccatat tctggctgca acagaccgtt
     9481 gatcaattta atcatggttg ttttacccga accatttggt cccaaaagtc ctatgatttt
     9541 tccagcagtc aacttcaaat tgacattatt tagggcgaca gctccaccat aagattttga
     9601 aacttgctgt agctcaacca aagtatatgc gttactcata agtaactcct ttcaaataat
     9661 catctaactg gctagtgagt tcatcgtgtc taaagcccaa ttctaacata ttgttcacga
     9721 agttctccag ttccttttgg gctaaatgta ggcgagtttg tgtaatcaat tcctgattat
     9781 ccgttacaaa acggcctgtt gtgcgtactg agtaaacaaa tccttctgtt tctaaatcag
     9841 acaaagcgcg ctgaacggta tttggattga caccagcaat gtcggctaag tcacgaacag
     9901 tgggaagttt atctccagat tttaattgat tggtcacaat ctgcaattta atagtattgc
     9961 tgatttgaat atagatgggg atgttattat caaatttcca agccataatc gtttcctttc
    10021 taggatgaca cccgtgtgta tgtcttatat taa
//
LOCUS       DASGCC010000072        10005 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.072, whole genome shotgun sequence.
ACCESSION   DASGCC010000072 DASGCC010000000
VERSION     DASGCC010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10005
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.072"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(185..1207)
                     /gene="ilvC"
                     /locus_tag="U1404_001282"
     CDS             complement(185..1207)
                     /gene="ilvC"
                     /locus_tag="U1404_001282"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006145054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEM5348235.1"
                     /translation="MTVTMQYEKDVTVAALDGKRIAVIGYGSQGHAHAQNLRDTGHDV
                     IIGVRAGKSFDKAKEDGFETFEVAEAAKQADVIMILAPDEIQADLYNEEIAPNLEAGN
                     ALGFAHGFNVHFEFIKVPADVDVFMCAPKGPGHLVRRTFEEGFGVPALYAVYQDATGN
                     AKHIAMDWAKGVGSARVGLLETTFKEETEEDLFGEQAVLCGGLTALMQAGFEVLTEAG
                     YAPELAYFEVLHEMKLIVDLVYEGGFKKMRQSISNTAEFGDYVSGPRVITDQVKENMK
                     AVLADIQSGKFANDFVNDYKAGRPRMEAYRKEAENLEIEKVGAELRKAMPFVGRNDDD
                     AFKIYN"
     gene            complement(1339..1815)
                     /gene="ilvN"
                     /locus_tag="U1404_001283"
     CDS             complement(1339..1815)
                     /gene="ilvN"
                     /locus_tag="U1404_001283"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEM5348236.1"
                     /translation="MRRMLTAKLRNSSGVLNRFTGVLSRRQINIESISVGPTEVDGIS
                     RVTVIVDMVSHDEVEQIIKQLNRLIDVVRVRDLTDIPHLEREVILVKISAPPTKRAEI
                     LAIIQPFRANVVDVAPHSITIQMTGDGDKIDALLRVIQPYGIKNIARTGATGFSRD"
     gene            complement(1808..3511)
                     /locus_tag="U1404_001284"
     CDS             complement(1808..3511)
                     /locus_tag="U1404_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEM5348237.1"
                     /translation="MQEIQLDQPRSGSYLILDTLHQLGVDLVFGYPGGAVLPLYDAIY
                     QYEGIQHILARHEQGAVHEAEGYAKSSGKVGVAIVTSGPGATNAITGIADAMGDSVPL
                     LVFTGQVATRGIGKDAFQEADVLGMTMPITKYNYQIRDTADIPRVITEALHIATTGRP
                     GPVVIDVPKDIQERVVDFYHDPTLHLPSYQPTIEPNGLQVKKILKQLSQAQKPVILAG
                     GGVNYADANKELVAFAERYRIPVVSTLLGLGAMPIEHELSLAMGGMHGSYAANMAMDQ
                     ADYIINIGARFDDRLTGNPTTYAPNATVAHIDIDPAEIGKVVKTAIPVVGDAKATLKA
                     LLALETVETGYADWTAQVLENKRRAPFWYDEDEKVIKPQVAIELIGQLTQGDAIVVTD
                     VGQHQMWAAQFYPYKHARQLVTSGGMGTMGFGIPAAIGAKLANPDKEVIIFVGDGGFQ
                     MTNQELAILNGYGVPIKVVLINNHSLGMVRQWQESFYEKRRSQSVFDDEPNFQLLAEA
                     YGISHYSFDNPATLSEDMKVILEDKPMLIEVHISNREHVQPMVPAGKSNAEMLGVKFN
                     A"
     gene            3736..4785
                     /locus_tag="U1404_001285"
                     /pseudo
     CDS             3736..4785
                     /locus_tag="U1404_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917313.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
     gene            4775..5708
                     /locus_tag="U1404_001286"
                     /pseudo
     CDS             4775..5708
                     /locus_tag="U1404_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002918105.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
     gene            6261..7976
                     /gene="ilvD"
                     /locus_tag="U1404_001287"
     CDS             6261..7976
                     /gene="ilvD"
                     /locus_tag="U1404_001287"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM5348238.1"
                     /translation="MTDTNKLKDFRHRSSVYDSMVKSPNRAMLRATGMTDDSFEKPIV
                     GVISTWAENTPCNIHLHDFGKLAKEGVKDAGAWPVQYGTITVADGIAMGTPGMRFSLT
                     SRDIIADSIEAAMGGHNVDAFVAIGGCDKNMPGSMIAIANMDIPAVFAYGGTIAPGNL
                     NGKDIDLVSVFEGIGKWNNGDLTAEEVRQIECNACPGPGGCGGMYTANTMATAIEVMG
                     MSIPGSSSHPAESPEKKADIEEAGRAVVRMLELGIKPSDIMTREAFEDAITVTMALGG
                     STNATLHLLAIAHAANVELTLEDFNDFQERVPHLADLKPSGKYVFQDLYNVGGVPAVM
                     KYLLKNGFLHGDRITCTGKTVAENLENFADLTPGQDVIMPLENPKRADGPLIILKGNL
                     APEGAVAKVSGVKVRNHTGPAKVFDSEEEAIEAVLTDEIVDGDVVVVRYVGPKGGPGM
                     PEMLSLSSMIVGKGQGDKVALLTDGRFSGGTYGLVVGHIAPEAQDGGPIAYLRTGDLV
                     TVDQDTKEITMHVSDQEIEERKKTTVIPPLYSRGVLGKYAHTVSSASKGAVTDFWRPE
                     RTGKK"
     gene            8027..8413
                     /locus_tag="U1404_001288"
     CDS             8027..8413
                     /locus_tag="U1404_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348239.1"
                     /translation="MKLNVELSRFRVKEGKSVQVDEWMVFLNEHMEDTLLTLEGEKMY
                     VETIFREVLDGREYLYWYSVQAEGGIEVEDSESYIDKKHLEYWEECIDPSYGMVGLDP
                     QVIMIHKTIYETMEELDRQYDETFKK"
     gene            complement(8440..8781)
                     /locus_tag="U1404_001289"
     CDS             complement(8440..8781)
                     /locus_tag="U1404_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003080443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF59 domain-containing protein"
                     /protein_id="HEM5348240.1"
                     /translation="MREDIQINERALTISEQLVEVLESIYDPEIELDIYNLGLIYEIH
                     LDEAGFCKVVMTFTDSGCSCADTMPGELVAALKTIDGINDAQVEIVWSPAWKMTRISR
                     LGRITLGISPK"
     gene            complement(8873..9322)
                     /locus_tag="U1404_001290"
     CDS             complement(8873..9322)
                     /locus_tag="U1404_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEM5348241.1"
                     /translation="MELKDIMHILEDMKVGVFATLDEYGNPHARHAHITAANEEGIFF
                     MTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQ
                     HIYKDESSDTMQVFQIYAGHGFYHSLTQGHKYIFSIGQGEHSEVRAL"
BASE COUNT         2899 a         2259 c         1935 g         2912 t
ORIGIN      
        1 ttattttttt aatgtattca tgaatgaaat gggcaaaaga gccggaaaaa accagctctt
       61 ttattcattt tcagagatag gggaaaaaag ggaatgacat cccctcatcc gccaacccaa
      121 accttaaatg tattgccatc actcaaagta aagctgacta tccccctatc taccatgatt
      181 gtgtttaatt atagattttg aatgcgtcgt catcattgcg tccgacaaat ggcattgctt
      241 tgcggagttc tgcacctact ttttcgattt caagattctc tgcttcttta cgataagctt
      301 ccatacgtgg acgacctgct ttatagtcat ttacaaagtc atttgcaaat ttaccagatt
      361 gaatatctgc aaggactgcc ttcatgtttt ctttgacttg gtctgtaatc acgcgtggac
      421 ctgatacata gtcaccaaat tcagcagtgt ttgaaataga ttggcgcatt ttcttaaagc
      481 caccttcgta gacaaggtca acgatgagtt tcatctcgtg gagaacttcg aaataagcca
      541 attctggtgc ataaccagct tctgtcaaga cttcaaaacc tgcctgcata agggctgtca
      601 aaccaccgca gagaacagct tgctcaccaa acaaatcttc ttctgtctct tctttgaaag
      661 ttgtttccaa aagaccaaca cgggctgaac caacaccttt tgcccagtcc atcgcaatat
      721 gttttgcatt gccagttgca tcttggtaaa cagcatagag ggctggtact ccaaaacctt
      781 cttcaaaggt acggcggacc aagtgacctg gaccttttgg tgcacacatg aagacatcca
      841 catctgctgg taccttgata aattcaaagt gaacgttgaa accatgggca aaaccaagag
      901 cattgcccgc ttccaagttt ggagcgattt cttcattgta aaggtctgct tggatttcgt
      961 ctggagccaa gatcatgata acatctgctt gttttgctgc ttctgctact tcaaaagttt
     1021 caaaaccgtc ttcttttgcc ttatcaaatg acttacctgc acgcacaccg atgatgacat
     1081 cgtgccctgt atcacgcaag ttttgagcat gggcatgacc ttgtgaacca taaccgataa
     1141 cggcgatacg tttaccgtca agtgctgcta ctgttacatc tttttcatat tgcattgtta
     1201 ctgtcataat tttttctctt ttctattttt atttgtagtt ttggatgttc aaagaaaatg
     1261 aaggctagac taggcgaaga tagaactaac gttcatcaag cgaagtcaac gcaggatagg
     1321 ttttattatc gaaaaggatt agtctctact aaagccagtc gcacccgttc ttgcgatatt
     1381 cttgatgcca taaggctgaa tcacacgcag gagggcgtca atcttatctc catcacctgt
     1441 catttgaatg gtaatggagt gcggtgccac atcaacaaca tttgctctaa agggttggat
     1501 aatcgctaaa atttctgctc gttttgttgg cggagctgaa attttaacaa gaatcacctc
     1561 acgctctaag tggggaatgt ccgtcaaatc acggacacgg accacatcaa tcaagcggtt
     1621 cagctgtttg atgatttgtt cgacctcatc gtgactgacc atgtctacaa tcaccgtcac
     1681 acgtgagatg ccatctactt ctgttgggcc gacggagatg gactcaatat tgatttggcg
     1741 acgagatagg acacctgtaa aacgattcag aacaccagat gaatttcgca atttagctgt
     1801 taacattcta cgcattgaac ttcaccccca acatttctgc attgctctta cctgctggca
     1861 ccatcggttg aacatgttca cgattagaaa tatgaacctc tatgagcatt ggtttatctt
     1921 ctaagataac tttcatgtct tcacttagag tcgctggatt gtcaaaacta taatgactaa
     1981 ttccgtaggc ctctgccaac aattggaaat tcggttcatc gtcaaataca gattggctac
     2041 gacgcttttc atagaaggat tcctgccatt gacgaaccat tccaagagag tggttattga
     2101 ttaatacaac cttaatcggt acaccatagc cattcaaaat agccaattct tggttggtca
     2161 tttggaagcc accatcaccg acaaagatga ttacttcttt atctggattg gctaatttgg
     2221 cgccgatagc tgcaggaata ccaaagccca tggtccccat gccaccagat gttacaagtt
     2281 gacgtgcatg tttgtagggg tagaattgag cggcccacat ttgatgctga ccaacgtctg
     2341 tcacgacaat ggcatcccct tgcgtcaact gaccaattaa ttcaattgcc acctgtggct
     2401 taataacctt ttcatcttca tcataccaaa atggtgcccg acgtttgttt tccaatactt
     2461 gtgccgtcca atcagcatag cctgtttcga ctgtttctaa agcaagtaga gctttcaagg
     2521 ttgccttagc atcgcctact actggaatag ccgttttgac aactttacca atttctgcgg
     2581 gatcaatatc aatatgtgct accgtcgcat ttggcgcata ggttgttgga tttcctgtta
     2641 ggcggtcatc gaatcgcgct ccaatattga taatgtaatc agcctgatcc atagccatat
     2701 tggcagcgta tgaaccgtgc atccccccca tagccaagga taattcatgc tcaatgggca
     2761 tcgcacctaa tccaaggagg gttgaaacta ctggaatacg gtagcgctct gcaaaggcaa
     2821 ctaattcttt attggcatct gcataattga caccaccacc agccaatata actggttttt
     2881 gagcttggct aagctgtttc aaaattttct taacctgcaa accatttggt tcaatcgttg
     2941 gctgataact tggtaggtgt agagttgggt catgataaaa atcaacaact ctttcttgga
     3001 tatcttttgg aacatcaata acaacgggac ccggtctccc tgttgttgca atatggagag
     3061 cttctgtgat gactctagga atatctgccg tatcccgaat ttggtaattg tacttggtaa
     3121 tcggcattgt catccccaag acatctgctt cctgaaaagc atctttaccg ataccacgtg
     3181 ttgcgacttg accagtaaaa actaaaagag gaacactatc acccattgcg tccgcaattc
     3241 cagtaatggc attggtagct cctggcccag aggttacaat ggctacgccc acctttcctg
     3301 atgatttagc gtatccttcg gcctcgtgga ccgctccttg ttcatgacga gccaaaatat
     3361 gctggattcc ctcatattga tagatagcgt catatagagg caaaactgcc ccaccaggat
     3421 aaccaaaaac aaggtctact cctagttgat gcagggtgtc caaaatgaga taggaccccg
     3481 aacgcggttg gtctagttga atttcttgca cgaatattcc tcctctctgc aaatttgtta
     3541 tctactataa tatcacaagg aagtagaatg tcaaggaatt ttctgaaaat tcctacattt
     3601 gttcgttttc ttaactattt cctaacattt cttaagcaaa acttaagcaa atcccttgac
     3661 tggcttggtt tcagcttgct ttcagaaaac atcagtatag tagttccact aaaaaaatta
     3721 aatgaggttt aggatatgta ttatgtagtg ataccggctt accagccaga tgaaaaatta
     3781 atccaactat tagaaataat gaaaaacagg ctaaattgtc aggttatcgt tgtggatgat
     3841 ggtagtactg gcgcatccaa aaatattctt gaaatcgcca aaacctatgc aattgttctc
     3901 caccatgatg tcaacaaagg aaaaggccaa gccttgcgaa cagcctttag tttcatccaa
     3961 gatttgagaa aaccaggtgt tatcgtaact gctgacgcag atggtcaaca cactgtaaat
     4021 gatattgacc gtgtcgcacg cgccgccatg aatctaccaa gccgcctgat tcttggtgtt
     4081 cgtcaattta ctaaagacat cccgctccgt agccgatttg gtaacaaact aaccagagta
     4141 ttgtttagat tgcaaactgg tgtcaatgtg tccgataccc aaacaggctt gcgtggattc
     4201 catactgact taattccatt catgttagat attgaaggcg accgctatga gtacgagatg
     4261 aacatgttaa ctcaggcaag tcaacgctat aaaattacgg aagttccaat tcaaactatt
     4321 tatatcgatg ataatgccag ttcgcatttt cgtcccataa aagatggact gctcatttac
     4381 aaaaatctct tcaaatttgc cctggcatct tttggtggat ttctagttga ctacggaata
     4441 tatgcacttg ccttattgct actcactagc ttaccaactg ctctacgctt attggtcgca
     4501 aacacgattg ctcgcatttg tagcgctacc tgtaattttg cacttaataa gaaattagtc
     4561 tttaacaatg aagagagcat cgcacgaaca ggcgcaggct actttacact agcccttgtc
     4621 ctcttccttt gcgatacagc cctcctctat ctcttccacc aaattctagg acttaacctc
     4681 tacattgtca aacttgcagt tgatatcttc cttttcctag cctcttggtt tgttcaaaag
     4741 aatattattt ttaaagaaag gaaatcattt tcccatgaaa ttgctaaaaa aaacctttgc
     4801 ctacgcagcc atcttcggaa tgcttttgac aggaggcttt acttactcca tgttaaaaac
     4861 cttcgtgctt tccgaggcta tcacaacggt tgctgcaagt aatgccacag ccaatagcca
     4921 gaacacagct acttcatcgt catcaactgc cgcaaccact gcaactaatg tctctacaac
     4981 ggatactagt tactctgatg ataatattca gataaattta gagacgatta ccaccaataa
     5041 cacaactgtt tacgtcgcag atattcaggt cagctctcca gagtatttaa agacagctct
     5101 agcccaaaat acctatggca cgaacgtaac agctaaaact tctgaaactg cgacagcaaa
     5161 caatgccatt ctagcggtta atggtgacta ctacggagcc aattcaactg gttatgttat
     5221 taagaatggc gttctctatc gcgacactgt tcgtgacaat gctgcttacg gcgacttggc
     5281 aatctacgcc gacggctcat ttgaagtcat ctatgaaaat gaaatcactg cccaggaatt
     5341 gattgacaag ggtgtcgtca acctcttagc attcggtcca tcattggtag agaatggcga
     5401 aattgtcgtc gatacttcaa cagaagtcgg acgtgcaatg tcatccaacc ctcgttctgc
     5461 tatcgggatt atcgatgaaa atcattatat catcgtcgta gcagatggac gtacgtctga
     5521 aagccaagga ctctctctat caattggcag aagttatgaa acaatatggt gctcaaactg
     5581 cctacaacct tgatggcggt ggttcatcca ctctttactt taacggtcaa gttattaaca
     5641 acccaataac aaatggaaat actatctcag aaagggcggt gagtgacatt gtctacatcg
     5701 gttactaatt caactacaag agtttcaaga acatttatct cctacttagc aataacagct
     5761 ttcctgttta ttttcagtcg aatctatgaa agtctcagct atggcgaagt ctctgtcttt
     5821 atgcattata tgttctgtat accattaata ggcggagctg tgctactcgg tctgctgcaa
     5881 cttataccta ccctttcacg tctctcttat aatttgtgga attctggcgt tgcaactatt
     5941 acagctggtt gtcttctcca aggcattatc aacctatctg gacgttcaac taccttagat
     6001 caaccttatt ggtacatcgg cgcagccttc ctagttctat ctttagtcag tctttttatc
     6061 aatccatccg caaaacaatc gtcgaaaaac gaccacttaa tctacaaata aattgtaatg
     6121 gcacttaaca ttcttaggtg ccttttactg tagaatgaat tgttgaaaaa ttcggaaatt
     6181 tccaattatt tatcagatct tttatcgttt ctttcatatc tatgatataa tgggtaaaat
     6241 aagataggga gaagaaaatt atgaccgata caaacaaact taaagacttt cgacatcgca
     6301 gctctgttta cgattcgatg gtcaaatcgc ccaaccgtgc tatgttgcgt gccacaggca
     6361 tgaccgatga tagctttgaa aagcctattg ttggggttat ttcgacatgg gctgaaaaca
     6421 caccctgtaa catccacctt catgactttg gaaaattagc caaagaaggg gtaaaagatg
     6481 caggtgcctg gcctgtccaa tacggtacca tcaccgttgc agacgggatt gccatgggaa
     6541 ctcctggtat gcgcttctcc ttgacttcac gtgatatcat tgcagattct attgaggcag
     6601 ctatgggagg acacaacgtg gatgcctttg tcgcaatcgg tggctgtgat aaaaacatgc
     6661 ctggttccat gattgccatc gccaacatgg atatccctgc tgtttttgcc tacggcggaa
     6721 ccattgcgcc aggtaatctc aatggtaaag acatcgactt ggtatccgtt tttgaaggaa
     6781 tcggaaaatg gaacaacggt gacttgaccg ctgaagaggt tcgtcaaatc gagtgtaatg
     6841 cctgtcctgg acctggtggt tgcggtggta tgtacactgc caataccatg gctactgcca
     6901 ttgaggtaat gggcatgtct attcctggct cttcttctca ccctgctgaa tcaccagaga
     6961 aaaaagcaga tattgaagaa gcaggtcggg ccgttgtccg catgttagaa ctaggtatca
     7021 aaccatctga cattatgacg cgtgaagcct ttgaagatgc cattacagtc accatggcac
     7081 tcggtggctc caccaacgct actctgcact tgctggccat tgcccatgct gctaatgttg
     7141 aattaacact ggaagatttc aatgatttcc aagaacgcgt gcctcacttg gcagacctga
     7201 aaccatcagg aaaatacgtt ttccaagacc tctacaatgt cggcggcgtc ccagctgtca
     7261 tgaaatactt gctcaaaaac ggcttccttc atggcgaccg catcacatgt acaggtaaaa
     7321 ccgttgctga aaacctagag aattttgcag acttgactcc aggtcaagat gtcatcatgc
     7381 cacttgaaaa tccaaaacga gcggatggcc cactcatcat cctcaaaggt aaccttgctc
     7441 ctgaaggtgc cgttgccaag gtttctggtg tgaaagtccg caaccataca ggtccagcca
     7501 aggtctttga ttcggaagaa gaagctatcg aagctgtctt gactgacgaa attgtagatg
     7561 gcgatgtagt cgttgtccgc tatgttggac caaaaggcgg tcctggtatg cctgaaatgc
     7621 tgtccctttc ttctatgatt gtcggaaaag gccaaggtga caaggtagcc cttctaacag
     7681 acggtcgttt ctctggtggt acctatggac tggttgttgg acacatcgca cctgaagctc
     7741 aggatggcgg tccaattgcc tacctccgta caggtgattt ggtgacggtt gatcaagata
     7801 ccaaagaaat caccatgcac gtttctgacc aagaaatcga agaacgcaag aaaaccactg
     7861 tcattccacc actctactct cgtggtgttc tcggcaaata cgcccacact gtatcctctg
     7921 cctctaaagg agccgttacc gacttctgga gaccagaacg tacggggaaa aaataaggaa
     7981 ctaaacgacc ctgtcctcgc ggcagggttt tccaaaagga gaaaaaatga aactgaacgt
     8041 cgaactctcc cgttttcgtg ttaaagaagg caagtccgtt caagtggatg aatggatggt
     8101 ctttctcaac gagcacatgg aagacaccct tctcactctt gaaggagaga aaatgtatgt
     8161 cgaaaccatc ttccgtgagg tattggacgg acgcgaatac ctctattggt actctgtcca
     8221 agctgaagga gggattgaag tcgaagattc agaatcctat atcgacaaaa aacatttaga
     8281 gtattgggaa gaatgcatcg acccgagcta tggtatggtc ggtttggatc cgcaagttat
     8341 catgattcat aaaactatct atgaaaccat ggaagaatta gacagacaat acgatgaaac
     8401 atttaaaaaa tgagctgctc catgcaactc attttctttt tatttaggac tgataccaag
     8461 cgtaatgcgt ccaagacggc tgatacgggt catcttccag gcaggagacc agacaatctc
     8521 gacctgtgca tcgtttatac catcaatcgt tttcaaggct gcaaccaatt caccaggcat
     8581 agtatccgca caagaacaac ctgaatctgt aaaggtcata acaaccttac aaaaaccagc
     8641 ttcatctaaa tgaatctcat aaatcaaacc caaattgtag atgtctagtt caatttcagg
     8701 atcgtaaata gattccaaaa cctctaccaa ctgttctgat atagttaacg cacgttcatt
     8761 aatctgaata tcttctctca tcaagttcaa acactcctaa aatatttata agaagtattg
     8821 tatcataatt atttgaaata tacttgtctt atcaaatgtt ttcaactagt tttcaaagtg
     8881 cacgaacctc tgaatgctca ccttgaccaa tagaaaagat atacttatga ccttgagtca
     8941 agctatgata gaagccatga ccagcataaa tctgaaatac ttgcattgta tcactagact
     9001 catctttata gatatgttga taataaggat tatccgcaaa aactgtcttt agatagtcgt
     9061 tctccacagg tctggcagtc ccttctacac gcactacctg gataaggtac ccttcctcag
     9121 aaatagccgt cattgcaact ctttgatccc ccatcaattg atcatagaaa tgcgtttctg
     9181 ggcttgtcat aaagaaaatc ccttcttcgt ttgctgcagt gatatgagca tgacgagcat
     9241 gtggatttcc atactcatcc agagtagcaa aaactccaac cttcatatct tccaaaatat
     9301 gcataatatc ttttagttcc atggtatcac cccttgaaaa tacctatttt ctaaactata
     9361 tcaaaaacaa gcgaaaatgt taagtggaat attgatagaa atggtgaaag tgtttcatga
     9421 ataactccct actgacggaa ccaattaaga aggtagctat gtttgcttca ttttcaacct
     9481 tcaaaggttc ctcaaccctt ttgattccca attggtatgg atttgactac tgaaccgatt
     9541 atgacaacaa tcaaaatccg tcgttactat aaaaactacc taattataaa aaagtgactc
     9601 ttgagtgctt tgaaacgttg atatttcgcg gtatattaac gtttactaaa ctggcttgct
     9661 ttacgtgctt tcttaagacc tggttttggg tgacagaagt aaaatgccta taaaagatta
     9721 ttaaatcaag ctttcaaagt ccattttcat cacatttaac cacttataac tcaatcatac
     9781 aaacaatgga ttaccattag attaccaaaa atctgttttc ggagcttatg tgattgagga
     9841 acaacattac tgacaatctc tatcttcaca atttacttta ttaataaatg tacacaattc
     9901 tcaatctcag taatcaactg ctcttgggtg ttgaaatcat cgagagcatt ataaatctct
     9961 cttatacgat ctgaaaagtt tatatttttt gctctttcac ttatt
//
LOCUS       DASGCC010000073         9766 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.073, whole genome shotgun sequence.
ACCESSION   DASGCC010000073 DASGCC010000000
VERSION     DASGCC010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9766
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.073"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(121..459)
                     /locus_tag="U1404_001291"
     CDS             complement(121..459)
                     /locus_tag="U1404_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HEM5348242.1"
                     /translation="MSTNIYDIANELERAIRNLPEYKAVEAVKVSVEGNSEAKEILES
                     YISFQKEIQSKLQAGEIPTEADQKKMLDFNKKVQGNPLLTEYFSKQQQLGTYVADLER
                     IIFKPLNELL"
     gene            complement(469..1572)
                     /locus_tag="U1404_001292"
     CDS             complement(469..1572)
                     /locus_tag="U1404_001292"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEM5348243.1"
                     /translation="MKKTILIVGLGLIGSSLALCIRKDHPDYHLIGFDPNEQSCQIAL
                     GKGMVDEVSTELEGVAKQADVILLCVPIQVSLRLIEEFSALELKDTVLITDAGSTKSA
                     IVAAAEEHLAPRQINFIGGHPMAGSHKSGASAADLHLFENAYYIMTPCQATKQDAVPR
                     LTDLLSGTGARFVQIDAAEHDRVTSQISHFPHVLASSLMHQAGEYAQDHPFTNNFAAG
                     GFRDMTRIAESEPSMWTNILLTNADSILNRIEEFQARLSEISDVLRSGDQKAIWDFFD
                     KGRQTRKAMEIHKRAGVDSFYDLFLSVPDEEDTILKVLEVLRGISIVNIRINEENRED
                     IHGILQITFKNKGNLEDAAKRLREQTTYKIHLD"
     gene            complement(1580..2746)
                     /gene="aroC"
                     /locus_tag="U1404_001293"
     CDS             complement(1580..2746)
                     /gene="aroC"
                     /locus_tag="U1404_001293"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002997861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEM5348244.1"
                     /translation="MRYLTAGESHGPRLTAIIEGVPAGLPLTAEDINEELKRRQGGYG
                     RGSRMQIETDRVEITAGVRHGKTTGAPITLNVTNKDHQKWLDIMAVEDIEEKLKSKRR
                     IKHPRPGHADLVGGMKYRFDDLRNSLERSSARETTMRVAVGAVAKRILAELDIEIANH
                     VVVFGGKEIDVPDGLSVAEIKERAAQSEVSIVNQEREEEIKAYIDQIKRDGDTIGGVI
                     ETVVGGVPAGLGSYVQWDKKLDAKLAQAVVSINAFKGVEFGVGFQAGYLKGSQVMDEI
                     LWSQEKGYTRRTNNLGGFEGGMTNGEALIIRGVMKPIPTLYKPLMSVDIDTHEPYKAT
                     VERSDPTALPAAGVVMESVVATTLATEILEKFSSDNMEELKAAVASHRDYVKNF"
     gene            complement(2750..3424)
                     /locus_tag="U1404_001294"
     CDS             complement(2750..3424)
                     /locus_tag="U1404_001294"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEM5348245.1"
                     /translation="MKIVVPIMPRNLEEVETIDVERLAEADIVEWRADYLPKDDILRV
                     APAIFEKCSGKEVVFTIRTTREGGHLDLDDQEYVNVIKEVATLYQPDYIDFEYYSYKS
                     VFEQMLEFPNLVLSYHNFEETPSNYMEIMSELTSLSPAVVKMAVMAKTEQDVLDVMNY
                     TRGFKSLNTEQIFATIAMGELGKLTRIAGVITGSCWTFASLDETSAPGQMSLSNTRKF
                     LEILEN"
     gene            complement(3421..4584)
                     /locus_tag="U1404_001295"
     CDS             complement(3421..4584)
                     /locus_tag="U1404_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEM5348246.1"
                     /translation="MKIKVNRIAEQKINRGIQLLDSADFSGVSFDEDRLAVLYSESGS
                     YLGQAYLSKQNKGIGWLFSRSNQDLTMDFFVKLFVDAKQKRQHFYQSEMTNAFRLFNQ
                     DGDSFGGMTVDLYDEYAVFSWYNTFIYSVKEMIVAAFQQVFPEVRGAYEKIRFKGLAF
                     ESAHLYGEEAPEYFTVLENGVHYQVFMNDGLMTGIFLDQHEVRGSLVDGLAAGKSLLN
                     MFSYTAAFSIAAAMGGAEETTSVDLAKRSRELSKAHFKVNSLDLDNHHFVVMDVFEYF
                     KYAKRKGLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQSLEILNTGGTIIASTNAA
                     NVSVEKFKRQIEKGFDVRKHRYEATYRLPADFVINKNDESSNYLKVFTIQVDK"
     gene            4700..6874
                     /locus_tag="U1404_001296"
     CDS             4700..6874
                     /locus_tag="U1404_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5348247.1"
                     /translation="MKKLIDYVKKSGQTRLGFVLILLIIYWLKTLWAYYVDFNLDTQG
                     FFQNFIAIMNPLPVGILLLGLSLYIKNTKVFYSVAMIIYIILSVWLFSNAVYYREFSD
                     YISISTIMATSSVSAGLGEAALKLFRLWDIVYFLDFIIFGILVYRKLLRWDKKTFHKK
                     SSFAITALSVMLFSINLFLAEIDRPELLTRGFSNTYIVRALGLPAFLGYNANQTYNAH
                     KNRSGASATDLEPVKQYITEHYAQPNDNYFGIAKGRNVIYLHLESLQQFVIDYKLNVN
                     GVEYEVTPFLNSLYHSSSTLAFSNFFNQVKAGKTSDAETMIETSLFGLNQGSFMVQYG
                     GSNTQQAAPYILSQNGGYTSAVFHGNAASFWNRNNTYKQWGYNYFFDQSYFSKATAEN
                     SFQYGLNDKIMFADSIQYLEHLQQPFYTKFITVSNHYPYTTSLIGDEIGFPLANTDDE
                     TINGYFATANYLDASIKAFFDYLKATGLYENSVIVLYGDHYGISNSRNPDLAPLIGKD
                     SQTWSDFDNAMMQRVPYMIVVPGMTNGGIFDTYGGEIDALPTLEHLLGIKSDNYLQVG
                     QDLLSSQHSQIVALRTAGSFITPKYTSYEGKIYYTETGLEITNPDETTQKEIDAIKEA
                     TAAQLATSDAIQTGDLIRFFDNGLPALDPSQYNYIDSLAAEIALENKLGKQSTSLYST
                     NGNKSTIELFKAPSYLELHGSTTATSTPNTGTSSTSTSSNSR"
     gene            complement(7171..9675)
                     /locus_tag="U1404_001297"
     CDS             complement(7171..9675)
                     /locus_tag="U1404_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5348248.1"
                     /translation="MKQGKTLLYVAGASLICAVALVTYQASNYREQSNHQKTTSIETS
                     QSKQSKEIPSDSKKEVPGIDKATDDGFLLTDESQIEEKTDLGIIVNHGDHKHFFFYSD
                     LKNTKWAYLIPENYQEKNHSSQPKRSQLSSGSKQIEDEYVFDPKDIVAEDANGYTVRH
                     GDHYHYILKSSLGGTTHRQLTSDSRQSPTLPIVHQQEGIPGIDFQTSDGFLFDGQNIS
                     GVTETGILVRHGKHLHLIHFETLKRSKWSYLVNQYKPNVESDKKAQPEVENTEYQTKL
                     DYLAKELNLEPSRFKKVIVDGQIGLEYPHGDHTHIVLLKEIDTTKPFESPEDRILKQK
                     DGETLEQRKERLIKQYMERFKVKREDITIDGNYMSVRHGDHAHVYKIDPSLPDDPERD
                     VKTETVNLAIEKQLVYGPFYTEGSTENLTRNGVHQKYRPEGLQDIKNFILVTFSTNSD
                     FGNFVVNGKKTKRVYYLVRKDLNWEDLNIAYPQTLQQKGRVFNGWNATLPKSGKMARE
                     HQSFYADFDNVYRKPTKNIYTPSDDVSNIDLSDYVPVKYSAIANGRLKLNGEIRAGFI
                     YFVKSDLTWKQAKEQGLVVPEPVPSKDYEFIEFRTVITGGEKDTDYVSATTSLAAFGT
                     TAPRIGPYIANNTENPTDINDPSRHPNYYWHDPKNYVALAFRAGEGGQLQTHLGTSKT
                     VVYLVRKGLTLNQAGIFPPSLKSDTGYKRDYTKPVIPNVAWDTPILEDTVYDIHFDKV
                     ESDSKDGTVEPGDTWLPGNSLPNTPDVPNGEENADSWLDDLLTPSPEATDVETVTEAE
                     TTTEDTKATESSTAAPIDIPKKSSTEEEPSEDFIFP"
BASE COUNT         2861 a         2195 c         1640 g         3070 t
ORIGIN      
        1 gttcttactc cccaagtacc gtttctgaat ctgtacttgg agataagaac tctacgtaag
       61 cagcgtatac taggcgtcaa tccatgacct aacaccctgc tcctatcaaa tataaatata
      121 ttacaacaat tcgttgagag gcttaaagat gatacgttcc aaatcagcta cataagttcc
      181 caactgttgt tgcttgctga aatattccgt caaaagtgga tttccctgaa ctttcttgtt
      241 gaaatccaac attttctttt ggtcagcttc agtaggaatt tcaccagcct gcaatttaga
      301 ttggatttct ttttggaaag aaatataact ttccaatatt tctttggctt ctgaattccc
      361 ctcaactgag accttaacgg cttccaccgc cttatattca ggaaggttac ggattgcacg
      421 ttccaattca tttgctatat catagatatt tgttgacata tttttctcct aatctaaatg
      481 gattttgtaa gtcgtctgct ctcttaaacg tttcgcagcg tcttccaaat ttcccttgtt
      541 tttaaacgtg atttgtaaaa taccgtgtat atcttcacgg ttctcttcat tgatacgaat
      601 attgacaatg gaaatacccc gtaagacttc caaaaccttc aaaatcgtat cttcctcatc
      661 aggaacacta aggaataaat cgtagaaaga atcaacacct gcacgcttgt gaatttccat
      721 ggctttacga gtttgacgtc ccttatcaaa aaagtcccaa attgcttttt gatcgcctga
      781 tctgagaaca tctgaaattt ctgagagacg tgcttgaaat tcctcgattc gatttagaat
      841 agaatctgca ttggttagca aaatgttagt ccacatgctc ggctcacttt ccgcaatccg
      901 tgtcatatct ctaaatcctc cagctgcaaa attattcgta aagggatgat cttgagcata
      961 ctcaccagct tgatgcatca aactagaagc caatacgtgt ggaaaatgtg aaatttgact
     1021 ggtcacacgg tcatgttctg ctgcatcaat ctgaacaaaa cgtgcccccg ttccagataa
     1081 caagtctgtc aatcggggaa ccgcatcctg cttggtagcc tgacacggtg tcataatgta
     1141 gtaagcattc tcaaatagat ggagatctgc tgcactggca ccagatttat gactacctgc
     1201 catagggtgt ccaccgataa aattaatttg tcttggcgcc aaatgttcct cagcagcagc
     1261 cacaattgca gacttcgttg aacctgcatc tgtaatcaag accgtatcct tcaattcaag
     1321 ggcactaaat tcttcaatca aacgcaaaga aacttgaatt ggaacacaaa gaagaatcac
     1381 atcagcctgc tttgctacac cctccaattc cgttgatacc tcatcaacca tccccttgcc
     1441 caaggcaatt tggcatgatt gttcgttagg atcaaagcca atgaggtgat agtcaggatg
     1501 gtctttgcga atacagagcg caagtgagct tccaatcaac cctagaccta caattaaaat
     1561 cgtttttttc attaattacc tagaaatttt tgacatagtc gcgatgactg gctactgcag
     1621 ctttcaattc ctccatatta tcggaagaga acttctctag gatttctgtc gctagagttg
     1681 tagctacgac tgattccatg actacaccag ctgctgggag agccgttgga tctgaacgct
     1741 ccacagtagc tttataaggc tcatgagtgt caatgtcaac cgacatcaat ggcttataga
     1801 gggtcggaat tggtttcata acaccacgaa taatcagagc ctcgccattg gtcataccac
     1861 cttcgaaacc acctagatta ttggttcggc gtgtatatcc tttttcttgg gaccagagaa
     1921 tttcgtccat aacttgactc cctttgagat agccagcttg gaagcctact ccaaattcta
     1981 ctcccttaaa agcattgatt gaaacaacag cctgcgctaa ttttgcatct aactttttat
     2041 cccattgcac atatgacccc aagccagctg gaactcctcc aacaacagtc tcaatcactc
     2101 cgccaatagt atctccatct cgcttgattt gatcaatata ggctttgatt tcttcttcac
     2161 gctcttggtt gacaatggat acttctgact gggctgcacg ctctttgatt tctgctacgc
     2221 ttaaaccatc tgggacatca atttccttcc ctccgaaaac gactacatgg ttagcaattt
     2281 caatatccaa ctcagccaaa atccgtttgg caaccgcacc aacagccaca cgcatagttg
     2341 tctcacgcgc gctagaacgc tccaaggaat tacgcaaatc atcaaagcga tatttcatac
     2401 caccaactag gtcagcatgt cctggtcgtg gatgtttgat acgacgctta cttttgagtt
     2461 tctcttcgat gtcctcaact gccataatat ccaaccattt ttgatggtct ttgttggtca
     2521 cattcaatgt aatcggggca ccggttgtct taccgtgacg aacaccagct gtaatctcta
     2581 cgcgatctgt ttcaatctgc atacgactac cacgaccgta tccaccttgg cgccgtttta
     2641 actcttcatt aatatcctcg gctgttaaag gaagacccgc tggaactccc tcaataatgg
     2701 ctgttagacg tggtccatga gactcaccag ctgttaaata acgcataact taattctcca
     2761 aaatttccag aaacttacga gtattgctta aagacatttg tcctggtgca gatgtttcat
     2821 ctaagctggc aaaagtccag caggagcctg taatcacacc tgcaatacgt gttaacttcc
     2881 ctagttcacc catggcgatt gtcgcaaata tctgctcagt gttcagtgat ttaaaaccac
     2941 gagtataatt cataacatct aggacatcct gctctgtctt agccattaca gccattttaa
     3001 caacagctgg tgataggcta gtcagttcag acatgatttc catataatta gacggtgttt
     3061 cttcaaaatt atgataactc aacacaagat taggaaactc caacatctgc tcaaaaaccg
     3121 acttataaga gtagtattca aaatcaatat aatctggctg ataaagcgtt gctacttctt
     3181 tgattacatt gacatattct tgatcgtcca aatccaagtg accgccttca cgtgttgtcc
     3241 gaatggtgaa aactacttcc ttaccactac atttttcaaa tatagcaggt gctactctta
     3301 aaatatcatc tttcggaaga tagtctgctc gccattcaac aatatctgcc tctgctagac
     3361 gttctacatc aatggtctct acctcttcca gatttctagg cataatagga actactattt
     3421 tcatttatct acctgtatcg taaagacctt taggtaatta ctactttcat catttttatt
     3481 gattacaaaa tcggctggca agcgataagt tgcctcatag cgatgttttc taacatcaaa
     3541 ccctttttca atctgccgct taaatttttc aacagaaaca tttgcggcgt tggtcgaagc
     3601 gataatagtt ccacctgtat ttagtatttc caaagattga gaaatcaact tgtgataatc
     3661 tttggctact gaaaaggttt gtttcttatt tcgtgcaaag cttggcggat ccaagacaat
     3721 cacatcataa gttaagcctt tacgtttggc atatttgaaa tattcaaata catccattac
     3781 tacaaagtgg tgattatcta agtctaaact attaacctta aagtgagctt tagaaagttc
     3841 tcgcgagcgt ttggctaagt caacagaagt cgtttcctct gctccgccca tggcagcagc
     3901 aatagaaaat gctgccgtat acgagaacat gttcaaaagt gacttgcctg ccgccaggcc
     3961 atccaccaag gaaccacgta cctcatgctg atccaaaaag attcccgtca tcagtccatc
     4021 attcataaag acctgatagt gaactccatt ttccaacaca gtgaaatact caggggcttc
     4081 ttctccataa agatgagcag actcaaaggc caaaccttta aaacgaatct tctcataagc
     4141 tcctcttact tctggaaata cctgttgaaa tgcagcaaca atcatctctt tgacagaata
     4201 aataaaggta ttataccatg aaaaaactgc gtattcatca tacaagtcaa ccgtcattcc
     4261 accaaaacta tctccatctt gattaaataa acgaaaagcg ttcgtcatct cagattgata
     4321 aaaatgttga cgtttctgtt tagcatccac gaataattta acaaaaaaat ccatggtcaa
     4381 gtcttgattg cttctactaa acagccagcc tatcccctta ttctgtttgg acaaataagc
     4441 ctgacccaaa tagcttccag actctgaata caaaacagcc agcctgtctt catcaaatga
     4501 aacacctgaa aaatcagcgc tatccaagag ttgaatccct ctgtttattt tctgttctgc
     4561 aatacggttt acctttattt tcatagaatt attataacat gtttcttcat atatgccaaa
     4621 aaaactctaa actttgaggc ttattttaaa attatggtat aatgaactaa acttttagaa
     4681 aggaccatga ggttttattg tgaaaaaact aattgactat gtcaagaaga gcggacagac
     4741 tagacttggt ttcgtcttga ttttgctaat catttactgg ctcaaaacac tctgggccta
     4801 ctatgttgat ttcaacttag atacacaagg gtttttccaa aattttattg ctattatgaa
     4861 tcctctacca gtcgggattt tattactcgg tctctcgctt tatataaaga atacaaaagt
     4921 cttctatagc gtagcgatga tcatttatat tattctttcc gtctggctct tttcaaatgc
     4981 agtctattac agagaatttt ccgattatat ttccatctct actataatgg ctacctctag
     5041 tgtatctgct ggattaggag aagcagctct taagttattt aggctatggg atattgtcta
     5101 ttttcttgat tttatcattt ttggaatcct agtctatcgt aaactactcc ggtgggataa
     5161 aaagacattt cataaaaaat ctagctttgc tattacagca ctatcagtca tgcttttctc
     5221 catcaacctc tttttagcag aaattgatag accagagcta cttacgagag gattttctaa
     5281 tacttatatc gtcagagccc ttggtttacc tgctttcctt ggttacaatg ctaatcaaac
     5341 ctacaatgcc cacaagaatc gttctggagc atcagctaca gatttggagc ctgtgaaaca
     5401 atatattaca gaacattatg ctcagccgaa tgacaactac ttcggtattg ccaaaggacg
     5461 aaatgttatc tatctccacc tagaaagctt acaacaattt gttattgact ataagttgaa
     5521 cgtcaacggt gtcgaatacg aagtcacacc tttcctcaat tctctgtatc attctagctc
     5581 tactctcgcc ttttctaatt tcttcaacca agtgaaggca ggtaaaacct ctgatgccga
     5641 aaccatgatt gaaacctcac tttttggact caatcaaggc tctttcatgg tccaatatgg
     5701 cggaagcaat acccagcaag ctgcaccata tattctctct caaaatggtg gctatacatc
     5761 tgctgtattc cacggaaatg cagccagttt ctggaatagg aacaacacct ataaacaatg
     5821 gggttacaat tacttctttg atcaatccta tttctctaaa gccactgctg aaaattcatt
     5881 ccaatacggt ctgaatgata aaatcatgtt cgccgactct atccaatatc tggaacattt
     5941 acagcaaccc ttctatacca aatttatcac agtttccaac cactacccct acacaaccag
     6001 cttgattggg gacgagattg gctttccatt agccaataca gatgatgaaa ccattaatgg
     6061 ctattttgct actgcaaact atctcgatgc gtccataaag gcatttttcg attacttaaa
     6121 agcgactggc ttgtacgaaa actccgttat cgtcctctat ggtgatcact atggaatttc
     6181 taattcacgc aatcctgact tggcaccgtt gattggaaaa gattctcaga cttggtcaga
     6241 ttttgacaat gccatgatgc aacgtgttcc atatatgatt gttgtacctg gaatgaccaa
     6301 cggcgggatt tttgatacct acggtggtga gattgatgca cttcctactc tcgaacatct
     6361 tttaggaatc aaatccgata actatcttca agttggtcaa gacctacttt ccagccaaca
     6421 cagccaaatt gtggctcttc gaaccgctgg cagtttcatc acaccaaaat acactagcta
     6481 cgaaggtaaa atctactata cagaaactgg tcttgaaatt acaaatccag atgagacaac
     6541 tcagaaagaa attgatgcaa ttaaagaagc tactgcagca caactggcga ctagcgatgc
     6601 cattcaaact ggtgatctta tccggttctt cgacaatgga ttgccagcct tggatccaag
     6661 ccaatataac tacattgact cattggctgc cgagattgca ctagagaata aacttggcaa
     6721 acaatcaaca agtttgtata gcacaaacgg caataagtcg acaattgaac tatttaaagc
     6781 accaagctac ctagaacttc acggtagtac aactgctact agcacaccaa ataccggcac
     6841 tagctcaaca agtaccagtt caaattcacg gtaatacact aaaaggctta gaatcatgtc
     6901 agttactaca ttgattctaa gcctttttat actcaatgaa aatcaaaaac agactagctc
     6961 caaaggtttg gggaaccttt ggaggttgga gatagagcga acgtagttca tttctactta
     7021 gcagatagaa ccctgttact attttgtttc aaggtaacag gctgaaaggc tccactggag
     7081 cctttcactc atcaaatcaa gtcaacaacg tctgattttg attttcgaag agtattagac
     7141 cactatttca aatcactcat atctatttca tcaaggaaat ataaaatcct cactaggctc
     7201 ttcctctgtt gatgattttt tagggatatc tatgggagca gcagtactac tttcagttgc
     7261 ttttgtatct tctgttgtag tttcagcttc tgttacagtt tctacatctg tcgcttctgg
     7321 actaggtgtc aacaaatcat ctaaccagct atctgcgttc tcttctccat taggaacatc
     7381 tggagtattc ggcaatgaat tcccaggcaa ccaagtatca cctggctcaa ctgtcccatc
     7441 tttgctatca ctttcaactt tatcgaaatg aatatcgtag acagtatctt ccaaaatagg
     7501 tgtatcccat gctacatttg gaataacagg ttttgtataa tctcgtttat aacctgtatc
     7561 actcttcaaa gatggcggaa aaattccagc ttggttcagt gttaatcctt ttctaacaag
     7621 gtaaacaact gttttactag ttcccaaatg tgtctgaagt tgaccacctt cacctgctcg
     7681 aaatgcgagg gctacataat tctttggatc atgccaatag taatttggat gtctacttgg
     7741 gtcattgatg tccgttggat tctccgtatt gttagcgatg taaggtccta tacgaggagc
     7801 cgttgtccca aatgctgcca agctcgttgt ggcactaaca taatctgtat ctttttctcc
     7861 accagtaata actgtcctaa actcaatgaa ctcataatct ttgcttggaa ccggttctgg
     7921 tacaacaagt ccttgctcct tagcttgttt ccaagttaag tcagatttca caaagtatat
     7981 gaaccctgct cgaatctcac catttaattt taaacgacca ttggctatcg cactatattt
     8041 aacaggtaca tagtctgata aatcaatatt tgaaacatca tcacttggag tgtaaatatt
     8101 tttggttggc ttacgataaa cattatcaaa atcagcataa aaactttgat gttctcttgc
     8161 catcttgcca gactttggca aagtagcatt ccaaccgtta aagacgcgtc ccttttgttg
     8221 aagggtctgc ggataggcga tgttcaaatc ctcccaattt aaatctttac gaaccaaata
     8281 ataaactctc ttcgtttttt taccattaac gacaaaatta ccaaaatcac tatttgtact
     8341 gaatgttact agaatgaaat ttttaatatc ctgaagacct tctggacgat acttttgatg
     8401 gacaccatta cgtgttaaat tttctgttga accttctgta taaaaaggtc catatactaa
     8461 ttgtttctca atagcaagat ttaccgtttc agtcttaaca tcacgctcag gatcatctgg
     8521 caaactagga tcaattttat aaacgtgcgc atggtctcca tggcgtacac tcatatagtt
     8581 cccatcaatt gtaatgtcct cacgttttac tttaaaacgc tccatgtact gtttaatgag
     8641 acgttctttt ctctgttcaa gagtttctcc atccttttgt ttaagaatac gatcttccgg
     8701 actttcaaat ggcttcgttg tatcaatttc ctttaataaa acaatatgtg tgtgatctcc
     8761 atgcggatac tctaatccaa tttgaccgtc aacgatgact ttcttaaaac gtgatggctc
     8821 taaattcagt tcttttgcta agtagtccaa tttggtttga tactcagtat tttctacctc
     8881 aggttgtgcc ttcttatccg attcaacatt tggtttatac tgattcacaa gataagacca
     8941 tttactcctt ttcaatgttt caaaatgaat aagatgcaaa tgtttcccat gccttactag
     9001 aatcccggtt tccgttacac cgctgatatt ttgcccatca aacaagaaac cgtcactcgt
     9061 ttgaaaatca atccccggaa tcccttcctg ttggtgaacg ataggaagag ttggcgattg
     9121 acgactatca gaggtcaatt gtctgtgtgt cgtgccacct aagcttgatt ttaaaatata
     9181 gtgataatga tccccatgcc gaacagtata gccattggca tcctctgcga caatatcttt
     9241 aggatcaaaa acgtattcat cttcgatctg tttcgagcct gacgataatt gacttctctt
     9301 aggttgagaa gaatgatttt tttcttgata gttttcagga attaaataag cccattttgt
     9361 attctttaaa tctgaataaa agaaaaagtg cttatgatcg ccatgattga caataattcc
     9421 taaatcagtt ttttcctcaa tttgtgactc atcagtgagt aaaaaaccat catccgtcgc
     9481 cttatcaatc cctggaactt cctttttcga atctgaagga atctcttttg attgctttga
     9541 ttgcgatgtt tctatgcttg ttgttttttg atggttcgat tgctctctat agttagacgc
     9601 ttgataagta accaatgcta cagcacaaat aagcgatgct cctgctacat aaagcaaagt
     9661 cttaccttgt ttcatatcta tgtttctctc cttatttacc attattatat taccgacacg
     9721 ataaatgtaa tcaactattg taaaatagca tcaccacatc cactta
//
LOCUS       DASGCC010000074         9630 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.074, whole genome shotgun sequence.
ACCESSION   DASGCC010000074 DASGCC010000000
VERSION     DASGCC010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9630
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.074"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(137..421)
                     /locus_tag="U1404_001298"
     CDS             complement(137..421)
                     /locus_tag="U1404_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5348249.1"
                     /translation="MLRIGTACGSGLGSSFMVQMNIESILRDLGVSDVHVEHYDLGGA
                     NPSEADVWIVGRDLADSATHLGDVRILNSIIDMNELRELVTAICQEKGLV"
     gene            complement(423..2465)
                     /locus_tag="U1404_001299"
     CDS             complement(423..2465)
                     /locus_tag="U1404_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5348250.1"
                     /translation="MVDNRTMAILMELFATRKESLYELSIQTGIEKEQLHSNLELVNQ
                     LLQEHSFPQIQYKDSEFVISTELYNQKESVFSLFRNRQIYLSQEERQLLIYLYTFIRK
                     EFVSNVHYQELLSVSRNTTLTDIKNVKELCLDFQVRLEYTRAKGYHLIGREEDKHRLA
                     LYALSNCLQSSIGVWALDYILKSWGEENPIEELKIVSQQACNYYKVSALEERLDEYLY
                     FLIFLFIRQARVGNRINWNFEGKGGFVKDFLQRLWKLLRLKSTSTLELNAATQEYLSH
                     LLQGCLEGESGEKDDLFYHLTVEIVEEMERLSLIAFEHRSEMIEGLQRHLIPAYYRLT
                     SRLVNVNSYTETIKEEHADLFYLVKKALRPLEEHLGFTIPDSEVSYFVIHFGGYIEAG
                     QQRSYRYRALVVCPNGVSSSLIVKENLRQLFPNIYFADTHSLQDWKMLDMTDYDMVFG
                     TIKLNIELPFFLVSQLMTSNHKKELFHLVNQHFPNAAYFLIEIEQLLSLVGKHATIHQ
                     EQALKYELVQFLNQRSHEQRGRSPMLEELITKETFQWSEEVLDWQKAVALVARPLVDK
                     GAIETRYIDAMIAKVEEFGPFIDLGKGIAIPHARPEDGVNEVGMSMLVLDKPVYLLDD
                     PSHEIRLFICIAAVDNQTHLRALSHLTKILRAEENIQQLVGAKEFADVQHLLKEEQ"
     gene            complement(2786..3280)
                     /locus_tag="U1404_001300"
     CDS             complement(2786..3280)
                     /locus_tag="U1404_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF536 domain-containing protein"
                     /protein_id="HEM5348251.1"
                     /translation="MGIEKTVSELAEILGVSRQAMNNRVKSLPEEFVDKNDKGVTVVN
                     RAGLIKLEEIYKTTIFEDEPISDEVKHRELMEILVDEKNAEIIRLYSQLKAKDKQLAE
                     KDEQLKVKDVQIAEKDKQLDQQQQLTLKAMADKEVLKLELDEVKAQAEEVQAKGFFAR
                     LFGK"
     gene            complement(3450..4850)
                     /locus_tag="U1404_001301"
     CDS             complement(3450..4850)
                     /locus_tag="U1404_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5348252.1"
                     /translation="MVTEQREYRFPEGFLWGSSTSGPQSEGSVAGDGKGWNNWDYWYS
                     QEPELFHQQIGLEQTSTFYEHFQSDLDLLVETGHSIFRTSIQWSRLIPEGIGEVNPQA
                     VEFYRAVFAGIRERGIKLLVNLYHFDLPYVLQEKGGWENKEIVWAYEAYARQCFSLFG
                     DLVDHWITFNEPIVPVECGYLGSYHYPCKVDAKAAVVVAYHTQLASSLAVRACHQLHP
                     YHKISIVLNLTPAYPRSQSPEDLQAARIAELFQTRSFLDPSVLGQYPRELVDILEKHG
                     LRPETTEEELTIIKENRVDFLGVNYYQPLRVQAPSEDGWNGEATFLSQYFQPYDKPDK
                     KINPHRGWEIYEEGLYDIAKNIQENYGNIEWLVTENGMGVEGEDVFEENGMIQDDYQI
                     HFMEDHLIQLHRGIDEGANCKGYMVWTFIDCWSWLNTYKNRYGLVSLDLQTQKRTVKK
                     SGYWFKQVSAKNGFIR"
     gene            5088..6263
                     /locus_tag="U1404_001302"
     CDS             5088..6263
                     /locus_tag="U1404_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5348253.1"
                     /translation="MNTVDTIIIGAGPAGMMAAISSSFYGKKTLLLEKNKRLGKKLSG
                     TGGGRCNVTNNGTLEDLLAGIPGNGRFLYSVFSQFDNHDIMNFFQENGVKLKVEDHGR
                     VFPTTDRSQTIIKCLEMKMLENGVDIRTGTEVVSIRKIDDLFHVKTSEETFTAPQLIV
                     TTGGKTYPSTGSTGFGHDIARHFKLEVTEIEAAESPVLTDFPHKKLQGISLDDVTLTY
                     GKHVITHDLLFTHFGLSGPAALRLSSFVKGGETAFLDALPTHSEQDLFEHLEANREKS
                     VKNALAELMPDRLADFFAENYNCKVKQVSPKDLTDLVTLLKALPIKITGKMSLAKSFV
                     TKGGVDLKEINPKTLESKKIPGLHFAGEVLDINAHTGGFNITYCLATGWVAGSSYSS"
     gene            6504..7196
                     /locus_tag="U1404_001303"
     CDS             6504..7196
                     /locus_tag="U1404_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348254.1"
                     /translation="MPINSFGQKIGMPLPHYSSGERPSLETIQGHTVRLEKLSLHHAD
                     DLYQFYGPSAKKTDWTYLPLEPFEDRATFQDYFQTLLNSTDPYYFAILDQATNQAVGT
                     FALMRIDTNHRTIEVGWVIFSPQLQRTRQATEAHYLLMTYVFEELGYRRYEWKCDSLN
                     QASRVAANRLGFTYEGNFRQALVYKERNRDTAWFSLLDHEWPDRKRALENWLKDSNFD
                     GQGQQKQPLSSF"
     gene            7277..7975
                     /locus_tag="U1404_001304"
     CDS             7277..7975
                     /locus_tag="U1404_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348255.1"
                     /translation="MQLKLSSVSKKFDHKIILEDTSFTFEQGKIYGLLGRNGAGKTTL
                     FNCIARNLTLDGGSIQFVKDEIAFDYDNTDIGFTQTYPQLPAFMTAYEFVRFYMDIHK
                     DKLKSPRSPEEWLNLVGIGEEDRHRLLKDFSHGMQNKVQLLLSLIVQPPVLLLDEPLT
                     SFDPVAAHEFKQLIREAKKDSVIIFSTHILQLAQDLCDEIVLLHHQELQAVPSDKLHD
                     PDFEQEVVTLLTAD"
     gene            7985..9610
                     /locus_tag="U1404_001305"
     CDS             7985..9610
                     /locus_tag="U1404_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348256.1"
                     /translation="MKTILRYFWYQEKYNLYRTVNGFFYYLRKLPLVGKSIPESIFKS
                     YSFKSGLFLILHVLSIPSRFLVKGIWLALNFYLASFWINLLSGGDLTFWNILPGTWLL
                     GFSLWMVFVGYTYRFGKGFEPFIVKSEREFMQNFGLSQSSFLQSQLFVEPIITSLFYL
                     PALLIFSGLSGNWLYLPLGLLTIPTGSFTGQALNRWFFNRRILSRRNSWQSWVILGTG
                     LAAIACLILFRNHLSPIFLLPVLVCQVLLIWFGYGYLKQQTNHLDYLYYCMDQSLQMD
                     KKIFEMTKGNEYTRQGLQMQAKLSMETGKDLTHLSGMTYLNALLFDRYRSVLTKKLHF
                     RLGCLLAIVLFIEGIRWFSKDDIQISNTNYIEGLPFAFMVMYAASMGKAVAQMVFVNC
                     DISMLHYPFYREAKTIIAGFHYRFLQTVKLNAAFSGSLLLALIIFTRAQLPIETYLLT
                     ALLLLSLTALFSFHDLFIYYILQPFTKDMEVVNPVYKFLSGALYWVAYLNIKLDLGSH
                     LYILLISIAMITYVSIGYWILLKKAPQTFRLKS"
BASE COUNT         2646 a         2347 c         1777 g         2860 t
ORIGIN      
        1 tgtaaggcta aacctagaat agcaatgaga gcaaccagaa ttgccggagt tttagcaata
       61 tcaatgagaa aatccaatac cattttctgt ctcctttata attttatctt tgcgggtcat
      121 cccctgtgta tacgatttaa accaaacctt tttcttgaca gatagccgtg acaagttccc
      181 tcaactcatt catatcaata atactattca atattcgaac atctcctaaa tgagttgcag
      241 aatcagccag gtcacgtccg acaatccaca catctgcttc actcggattg gcacctccta
      301 gatcataatg ctccacatga acatctgata cacctaaatc tcgcaaaatg gattcaatat
      361 tcatttgaac cataaagcta gagcctaaac ctgaaccaca ggctgttcca attcgtaaca
      421 tattactgtt cctcctttaa taaatgttgt acgtcggcaa attctttggc gccgacaagt
      481 tgttgaatat tttcttctgc tcgcaaaatt tttgtcaaat gcgagagtgc tctgagatgg
      541 gtttgattat ccacggctgc aatacaaatg aacagccgaa tttcatgact agggtcatcc
      601 aatagataaa ctggcttatc caataccaac attgacatcc ctacctcatt aaccccatct
      661 tctggtcgtg catgtggaat cgcaattcct ttacctaggt caataaaagg accaaactct
      721 tctaccttcg ctatcatagc atcaatatat cgagtttcta tagctccttt atctaccaga
      781 ggtcgtgcaa ccagggcaac tgctttttgc cagtctaaaa cttcctcaga ccattgaaag
      841 gtctcttttg taatcaattc ttctaacata ggactccttc ccctttgctc atgggagcgt
      901 tgattgagaa actgcaccaa ttcatatttt aaagcctgct cctgatgaat ggttgcatgt
      961 ttcccaacaa gtgataataa ctgctcaatc tcaatcagaa aataagccgc atttgggaaa
     1021 tgctgattaa ccaagtgaaa taattctttt ttatgattag aggtcatcag ctgggatacc
     1081 aagaaaaatg gtagttctat attcagcttg atagttccaa ataccatgtc atagtctgtc
     1141 atgtctagca tcttccaatc ctgtaaggaa tgggtatcgg caaaatagat attaggaaat
     1201 agttgccgta gattttcttt tacaatcagc gaagagctca ctccgtttgg gcaaacaacc
     1261 aaggcccgat aacgatatga acgttgttga cctgcttcga tgtagccacc aaagtggatg
     1321 acaaaataag atacctcact atctggtata gtaaaaccta gatgctcttc caaaggtcgc
     1381 aaagcttttt ttacaagata gaacaagtcg gcatgctctt ctttgatggt ttcagtatat
     1441 gaattgacat ttaccaaacg agatgttaaa cggtagtaag caggaattag gtgacgttgc
     1501 aaaccttcaa tcatttccga gcgatgttca aaagcaatta aggacaaacg ttccatctct
     1561 tccactattt ctacagtcaa gtggtaaaat agatcatcct tttctccgct ctcaccttct
     1621 aagcatcctt gcagtaaatg tgacagatac tcttgtgtcg cagcatttaa ttctaatgtg
     1681 ctagtacttt ttaaacgtaa taatttccaa aggcgttgca gaaaatcttt tacaaaccct
     1741 ccctttcctt caaaattcca gttaatacgg ttgccaacac gcgcctgacg gataaataaa
     1801 aatatcaaaa aatacaaata ttcatccaat ctctcttcta aagctgagac tttataataa
     1861 ttgcaagctt gttgactcac tattttcaat tcttcaatag gattttcctc accccaagat
     1921 ttaagaatat aatccaaagc ccacacacca atcgaagact gcaaacaatt actgagtgca
     1981 taaagcgcca agcgatgttt atcttcttct cgaccaatta gatgatagcc tttcgccctc
     2041 gtatattcca atcgtacttg aaagtccaag caaagttcct ttacattctt aatatccgtc
     2101 aatgttgtgt tacggctcac actcaataat tcttggtagt gaacgtttga tacaaattct
     2161 tttcggataa aggtataaag atagataaga agctgtcttt cttcttgcga aagatagatc
     2221 tggcgattgc gaaagagcga aaatacactt tctttttgat tgtaaagctc cgtagaaata
     2281 acaaactcgc tatctttgta ttgtatctgc gggaaggaat gttcttgcaa caattgattg
     2341 actagttcca aattagaatg tagctgctcc ttttcaattc ctgtttgaat actaagttcg
     2401 tacaaacttt ctttccgagt cgcaaacaat tccatcagaa tcgccatggt acgattatca
     2461 accatatttt cctccttgtc ttaattgtat cccttttcat ttctgatttc tagagtcttt
     2521 gagcccaatt aatataataa aaaatacaaa ttcaattgtg ctcactactt aaactaaaaa
     2581 agattggttc ccaccaatct ttttatatca catgccatct tccatttttt agtgcgggct
     2641 gaaacagtct atccctagac tgtacctcgc tttcttattt ccaagctcgg gctgaaacag
     2701 tctatcccca gactgtttca ctcccccgga cctttattcg ctctcttgct ttcaagctca
     2761 tgataaaaag gtcccccgga cctttttatt tcccaaacaa acgtgcaaag aagcctttag
     2821 cttgcacttc ttctgcctgt gctttaactt cgtccaattc caacttgaga acttccttat
     2881 cggccatagc ttttagtgtc aattgctgtt gctgatccaa ctgtttatcc ttctcagcaa
     2941 tctgcacatc tttaaccttg agttgttcat ctttttcggc aagttgctta tctttagctt
     3001 ttaattgact atataagcgg atgatttcag catttttctc gtcaactaaa atttccatca
     3061 attcacgatg cttgacttca tcactaatcg gctcatcttc aaaaatggtt gttttgtaga
     3121 tttcctccaa cttaatcaag ccagcacgat ttacaacggt cacacccttg tcatttttat
     3181 ctacaaattc ttcaggaagt gatttgacac gattattcat agcctgccgg ctcactccta
     3241 aaatttcagc taactcactg actgtttttt cgattcccat aatatcctcg gtacttacat
     3301 ttctcatagt ttgtatcatt aaaatattac cacagaaccc tatccctgtc aaatctaggg
     3361 gaattttctt accaagcatt agtgaataat cacaaacctc aaaagcatct tatctcaatg
     3421 caatgttatg cagaaacgaa atatacattc tatctaataa aaccattttt agcactcact
     3481 tgcttgaacc aatatccaga ttttttgaca gtacgcttct gagtttgaag gtcaagcgag
     3541 accaaaccgt atcggttctt ataggtattt aaccaagacc agcagtcaat aaaagtccag
     3601 accatataac ccttacagtt cgctccttca tcaatacctc gatggagctg aatcaaatga
     3661 tcttccatga agtgaatctg atagtcatcc tgaatcatgc cattttcttc aaaaacatcc
     3721 tccccttcaa ctcccatgcc gttctcagtt accaaccatt cgatattccc atagttttcc
     3781 tggatatttt tagcaatgtc gtacagccct tcttcataaa tttcccagcc tctatgggga
     3841 ttgattttct tgtcaggctt atcataaggc tggaaatatt gggataggaa agtagcttct
     3901 ccgttccatc catcttctga aggagcctgc acgcgcaggg gctggtaata attcaccccc
     3961 aggaagtcaa ccctattttc tttgataatg gtcaattcct cctctgtggt ttctggacgt
     4021 aaaccgtgtt tttcaagaat gtcaaccagt tccctcgggt attgtcccaa aacagatgga
     4081 tccaaaaagc ttctcgtttg aaatagctca gcaatccgcg ctgcctgtaa atcctctgga
     4141 ctctgacttc ttggataggc aggagtaaga ttgagaacaa tggaaatttt gtggtatggg
     4201 tgtagttggt gacaggcccg aacagccaaa gaactagcca gttgagtatg atacgctacg
     4261 accacagctg cctttgcatc caccttgcaa ggataatgat agcttcctag atagccacat
     4321 tctactggaa caatgggttc attaaaggta atccaatgat ccaccagatc tccaaagaga
     4381 ctgaaacact ggcgagcata agcctcatag gcccagacaa tctccttatt ttcccagccc
     4441 cctttttcct gtaagacata aggcaaatcg aaatgataaa gattgaccaa aagctttatc
     4501 ccacgctctc gaatacctgc aaatacagcc ctataaaact ccacagcttg cggattgacc
     4561 tcgcctatcc cttccggaat cagacgtgac cactgtatag aggtgcgaaa aatactatga
     4621 cctgtttcca ccaacaaatc caaatctgac tggaaatgtt cataaaaagt cgatgtttgt
     4681 tccagtccta tttgctggtg aaagagctca ggttcctgac tgtaccagta atcccagtta
     4741 ttccacccct ttccatcacc agctacgctt ccttcacttt gaggacctga agtggaggag
     4801 ccccacaaaa aaccttctgg aaaacgatac tctctttgct cagttaccat tcttctacct
     4861 actttctttc atgctacaga cggagttgtt agaacctgga ttcacaatgc agcttccaca
     4921 aaattacttt gcttgtacat acaggctcct gataaaaact aatttccctt agtttaagta
     4981 tactccccta acccgtcaat ggtcttccgc aatctcaagg aaaaactcca caaatcatag
     5041 caaagactca aactactttc ttgatgaaaa tatgatacaa taaaggcatg aatacagtag
     5101 ataccattat tatcggagcg gggcctgctg gcatgatggc cgcgatttct tccagctttt
     5161 acggcaagaa aaccctgctc ctcgaaaaaa acaaacgttt aggcaagaaa ctgtctggca
     5221 caggtggcgg acgttgcaat gtgaccaaca acggcacctt ggaagacctg ctggctggca
     5281 ttcctggcaa tggtcgcttt ctttacagtg tcttttccca gtttgacaac cacgacatca
     5341 tgaatttctt tcaggaaaat ggggtcaagc tcaaggtcga ggaccacggc cgtgtctttc
     5401 cgaccaccga ccgttcccaa accattatca agtgcctgga gatgaaaatg ttggaaaatg
     5461 gcgtggacat ccgtacaggg acggaggtgg tttccatccg caagattgat gacctcttcc
     5521 atgtcaagac cagcgaggag acttttacag ctccccaact cattgtcacc accggcggca
     5581 agacctatcc ttccactggc tcaaccggct ttggacacga cattgcccgc cacttcaagc
     5641 tggaagtcac ggagattgaa gccgctgaaa gccctgttct gactgacttc ccccacaaga
     5701 agctccaagg catttccttg gacgacgtca ccctgaccta cggcaagcac gtcatcaccc
     5761 acgacctgct ctttacccac tttggcctgt cgggacccgc tgctcttcgc ttgtccagtt
     5821 ttgtcaaagg cggcgaaacc gcatttctcg atgctctgcc gacccattct gaacaagatt
     5881 tgtttgagca tttagaagct aacagggaaa aatccgtcaa gaacgccctt gctgaactca
     5941 tgccagaccg cctagccgac tttttcgcag agaactacaa ctgtaaggtc aaacaggtct
     6001 caccaaaaga cctgactgat ttggtcaccc tgctcaaagc cttacctatc aagattactg
     6061 gcaagatgtc cttggccaag tcctttgtga ccaagggtgg cgttgacctc aaggaaatca
     6121 atcccaaaac cttggaaagt aagaaaatcc ctggccttca ctttgcaggt gaggtcttgg
     6181 acatcaacgc ccacaccggt ggctttaaca ttacctactg tctggcaact ggctgggtgg
     6241 ctggaagttc ctactcttcg taaatcaaac tcagacgttg ttgacttgat ttgatgagtg
     6301 taaagctcca gtggagcttt acagcctgct acccgaaaat aaaaggtagc agcgttctat
     6361 ctacatctaa tggcacgaac tttgttcgcc ttatttccaa cctccaaagg ttccccgaac
     6421 ctgtggaggt agtctgagtt cgattttctt tgagtattgc acttttataa atcgctcttc
     6481 aagctcaacc taaaggagaa accatgccta tcaattcatt cggccaaaag attggtatgc
     6541 ccttaccgca ttatagtagc ggtgagcgac caagtctgga gactatacaa ggacacacag
     6601 tccgcttaga aaaactgagc ctgcaccatg cagatgatct ctatcagttt tatggaccaa
     6661 gtgccaagaa aactgactgg acctacttgc cccttgaacc ctttgaggac agagcgacat
     6721 ttcaggacta tttccagact cttttgaact cgaccgaccc ctattatttt gccatccttg
     6781 accaagcaac caatcaggca gtcggaacct ttgcactcat gcgaatagat accaaccatc
     6841 gtaccattga agttggctgg gtcatctttt ctccgcaact gcaacggacc cgacaggcga
     6901 cagaagctca ctatcttctc atgacctatg tatttgaaga acttggctat cgacgctacg
     6961 aatggaaatg cgactcgctc aaccaagcca gtcgagtcgc tgccaaccgt ctgggcttta
     7021 cctacgaagg caacttccgt caagccctag tctataagga acgcaatcgg gatactgcct
     7081 ggttttctct attagaccac gaatggcctg accgtaagcg tgcccttgaa aactggctaa
     7141 aggatagtaa cttcgatggc cagggtcagc aaaaacaacc cctatcctct ttctaaattc
     7201 aagcaaaata tgcttgaatt tttttgtttt ttgttgtatg ataaaaccat aacaatataa
     7261 caaaaggaga ttggctatgc aactgaaatt atcttctgtt tccaagaaat tcgaccataa
     7321 aatcattttg gaagatactt cctttacctt cgaacaaggc aagatttacg gtttgctagg
     7381 gcggaatggg gctggtaaga cgaccttgtt caactgcatt gcccgtaatc tgaccttgga
     7441 tggtggctcg attcagtttg tgaaggatga aattgccttt gactacgata atacggacat
     7501 cggttttacc cagacctatc cgcaactacc tgcctttatg acggcttacg agtttgtccg
     7561 tttctatatg gatatccaca aggataaact caaatctcct cgtagtccag aagaatggct
     7621 aaacttggtc ggtatcggag aagaagaccg gcaccgtcta ctcaaggact tttcccacgg
     7681 gatgcagaac aaggtccagt tgcttctgtc tttgattgtc cagccacctg tccttctctt
     7741 agatgagccg ctgacttcct ttgaccctgt ggctgcccac gagttcaaac agctgattcg
     7801 ggaggctaaa aaggattctg ttatcatctt ttccacccat attctacaac tggctcagga
     7861 tctctgtgac gagattgttt tactacatca ccaagaacta caggctgttc cgagtgacaa
     7921 gctccacgac cctgattttg aacaggaagt ggttaccctc ttgacagcag actaggaggg
     7981 acttatgaaa accattctac gttatttttg gtaccaggaa aagtataacc tctatcggac
     8041 cgtcaacgga tttttctact atctgcgaaa actgccactt gtgggcaaga gcattccaga
     8101 gagtattttc aagtcttaca gttttaagtc tggtctcttt ttgatcctgc acgtcctctc
     8161 catccccagt cgctttctgg tcaagggaat ttggttagcc ctgaatttct acttggcatc
     8221 cttttggatc aatctcctct ctggcgggga tttgactttt tggaatattc taccagggac
     8281 ttggcttttg ggcttttctc tctggatggt ctttgttggc tacacctatc ggtttggcaa
     8341 gggttttgag ccctttatcg tcaagtccga gcgggaattc atgcaaaatt ttggactttc
     8401 ccagtctagt tttctccaga gtcaactatt tgtagaacct attatcacca gtctgttcta
     8461 cctgcctgcc ctgctgattt tttctggcct atcaggaaat tggctctatc tgcctctggg
     8521 attactgacc attccgacag gaagttttac cggacaggct ctcaatcgtt ggttttttaa
     8581 tcgacggatt ctatcccgcc gtaattcttg gcaatcctgg gttatcttgg gtactggtct
     8641 agcagcaatt gcctgcctta tccttttccg caatcatctg tcgcccatct ttttactgcc
     8701 tgtgcttgtc tgtcaggtct tgctcatttg gtttggctat ggttatttga agcaacaaac
     8761 caaccatcta gactatctct attattgcat ggaccagtcc ttgcagatgg ataagaaaat
     8821 ttttgagatg accaaaggga acgagtacac ccgacaaggt ttacagatgc aggcgaaact
     8881 gagtatggaa acaggaaagg acctgactca tctgtcaggc atgacctact taaacgctct
     8941 gctatttgac cgctatcgtt ctgtccttac gaaaaaactg cactttcgct tgggttgtct
     9001 tttggctatt gtccttttta ttgaaggaat tcgttggttt tcaaaagatg acattcaaat
     9061 aagcaatacc aactatatcg agggactgcc ttttgctttc atggtcatgt atgccgcctc
     9121 catgggtaag gctgtcgcac agatggtctt tgttaattgc gatatttcca tgctccacta
     9181 tccattttac cgcgaagcaa aaaccattat tgcaggcttt cattaccgtt ttctgcaaac
     9241 tgtaaaatta aatgctgcct tctctggatc tctactattg gccctcatca tctttactag
     9301 agcgcagcta cctattgaaa cctatctcct gactgctctg ctcctgctga gtctaacagc
     9361 cctattttcc ttccacgacc tctttatcta ctatattctc caacccttta ccaaggacat
     9421 ggaggttgtc aacccagtct ataaatttct cagtggggct ctctactggg tggcctatct
     9481 caatatcaag ctggatttag gcagtcactt gtacatccta ctcatttcca tagctatgat
     9541 tacctatgtc agcatcggct actggatttt gttgaaaaaa gctccgcaga ctttccgctt
     9601 gaaatcataa aaaatagcct ctcgcaagag
//
LOCUS       DASGCC010000075         9508 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.075, whole genome shotgun sequence.
ACCESSION   DASGCC010000075 DASGCC010000000
VERSION     DASGCC010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9508
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.075"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            47..2005
                     /gene="ligA"
                     /locus_tag="U1404_001306"
     CDS             47..2005
                     /gene="ligA"
                     /locus_tag="U1404_001306"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011837172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEM5348257.1"
                     /translation="MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELET
                     AHPELILPDSPTHRVGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQA
                     TYICELKIDGLSISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAVDIT
                     VRGECYMPKASFDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQE
                     ASPSEATSQSQVLEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVV
                     IKVNDLAIQEELGFTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPV
                     QLAGTTVSRATLHNVDYIAEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIP
                     SHCPSCQSDLQHYEDEVALRCINPICPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG
                     AGLVHDVADIYKLTVDDLLTLEGFKEKSADKLYQAIQTSKSNSAECLLFGLGIRHVGS
                     KASKILVEKFGDLETLAFADQEAIALLEGLGQVIAKSLTTFFASEGAQQLLAELKEAK
                     VNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV
                     AGTDAGSKLTKAQELGIEIKDEAWLESL"
     gene            2016..3059
                     /locus_tag="U1404_001307"
     CDS             2016..3059
                     /locus_tag="U1404_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM5348258.1"
                     /translation="MEERKRARLIYNPTSGQEIMKKNVAEVLEILEGYGYETSAFQTT
                     AEKDSAKNEATRAALADFDLIIAAGGDGTINEVVNGIAPLEKRPQMAIIPTGTTNDYA
                     RALKVPRGNPVEAAKVIGKQQTILMDIGLAKNQKNGFHQEHYFINIAAAGTLTELTYS
                     VPSQLKTMFGYLAYVVKGAELLPQVQFTPVRVEHDEGVFEGSVSMIFVALTNSIGGFE
                     QIVPDAKLDDGNFTLLMVKTGNLFEILHLIRQVLDGGKHIESDLVEYIKTKSLSIENL
                     NPDNRLLLNLDGEFGGEAPVRLHNLSNHIEFFADTDLVSDHAITLDTDQMNREDMAKR
                     FIEETDHIDEAIK"
     gene            3196..3396
                     /locus_tag="U1404_001308"
     CDS             3196..3396
                     /locus_tag="U1404_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEM5348259.1"
                     /translation="MSLGALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGV
                     FLGVAFIEGTFFVTLAMTFVLK"
     gene            3433..4149
                     /gene="atpB"
                     /locus_tag="U1404_001309"
     CDS             3433..4149
                     /gene="atpB"
                     /locus_tag="U1404_001309"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEM5348260.1"
                     /translation="MEEHLSPTLTLGPVTFDLTMVLVSVITISIIFLLVFWASRRMEL
                     KPKGKQNVLEYVYELTINFTKGNLGDAEAKRYSLFFFTVFTFLLVANNLGLMTKLETA
                     EGHNLWTSPTANMAYDFGLATIATVFCHVEGIRRRGFKAYLKSFVTPWAMAPMNILEE
                     VTNLVSLALRLYGNIYAGEVLVSLLLQLSQQSALAYPIAFALNVVWTAFSVFISCLQG
                     YVFIMLVSMYLNKKISSESE"
     gene            4167..4673
                     /gene="atpF"
                     /locus_tag="U1404_001310"
     CDS             4167..4673
                     /gene="atpF"
                     /locus_tag="U1404_001310"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEM5348261.1"
                     /translation="MATTITMQSSTILGNFILVTASFAVLIILIRVFAWDKITGIFEE
                     RANKIANDIDAAEEKLTAAANLVQQREDELVQGRIESQKIIQDAVERAKLEKKRILEQ
                     ADVEIQGLKQKAQLEIEAEKREAQENLRVQVAELAVDLASKIILEDLDQQAHSNLIDR
                     YLDKLGDK"
     gene            4674..5207
                     /locus_tag="U1404_001311"
     CDS             4674..5207
                     /locus_tag="U1404_001311"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM5348262.1"
                     /translation="MNARENAIVQKYALSFVEKVSDHADIWDMYDQISDLISIIHDSK
                     LNRILLSATVSREEKADFVRTVRQSSFWQINDLIEDVIRDGHADLLLETLERVQLQIS
                     KFKNEFEARVVSVYPLTEAQKERLRHLVEQRFSLRVRNITEELDQSLLGGFIVTVNHK
                     VIDASVRTQLKDVRKKL"
     gene            5211..6731
                     /locus_tag="U1404_001312"
     CDS             5211..6731
                     /locus_tag="U1404_001312"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011889023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM5348263.1"
                     /translation="MESGVLLINAQEISALLKQQIEGFQPDFDYTETGVVTYIGDGIA
                     RAQGLDNAMSGELLVFENGTIGMAQNLETNDVGIIILGQFTDIREGSVVRRTGKIMEV
                     PVGSALIGRVINPLGQPVDGLGEIRTSKTRPIEYPAPGVMQRKSVNEPLQTGLKAIDA
                     LVPIGRGQRELIIGDRQTGKTSVAIDAILNQKGQDMICIYVAIGQKESTVRTQVETLR
                     QYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYEGKHVLIVYDDLSKQAVAYR
                     ELSLLLRRPPGREAYPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAY
                     IATNVISITDGQIFLKDDLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLA
                     SYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTNGFL
                     DSVPIDDILAFEEELYSYFDLHYDGLLDVIRTTKDLPDTDELNAAIQAFKDQSVFK"
     gene            6743..7621
                     /locus_tag="U1404_001313"
     CDS             6743..7621
                     /locus_tag="U1404_001313"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM5348264.1"
                     /translation="MAGSLNEIKSKIASTKKTSQITGAMQMVSASKLAKSEQLAQSFQ
                     IYASKVRQITTDLLRGELMASDTSNPMLIRRPVQKSGYIVITSDSGLKGSYNSSILKA
                     VMGMIEQDHDSKDEYEIIAIGSMGADFFRARGINPVFELRGLADNPSFEEVQKIISKS
                     VEMYKNELFDELYVCYNHHVNSLTSQVRVQQMLPVEDLDHNEADGYTATFELEPNREV
                     ILEQLLTQYAESTIYGAILDAKTAENAAGMTAMQTATDNAKNVINDLTIQYNRARQAA
                     ITQEITEIVAGASALE"
     gene            7641..9047
                     /gene="atpD"
                     /locus_tag="U1404_001314"
     CDS             7641..9047
                     /gene="atpD"
                     /locus_tag="U1404_001314"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM5348265.1"
                     /translation="MSSGKITQVVGPVVDVAFAAEDKLPEINNALVVYKNDDSKQKVV
                     LEVALELGDGVVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDL
                     EESFPADFEREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
                     KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEP
                     PGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP
                     TLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQ
                     LGIYPAVDPLASSSRALAPQIVGEEHYAVAMEVKRVLQRYQELQDIIAILGMDELSDE
                     EKTLVGRARRIQFFLSQNFNVAEQFTGMPGSYVPVAETVKGFKEILDGKHDHLPEDAF
                     RNVGSIEDVVAKAAKMKF"
     gene            9057..9473
                     /locus_tag="U1404_001315"
     CDS             9057..9473
                     /locus_tag="U1404_001315"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM5348266.1"
                     /translation="MGQMTVQIVTPDGIKYDHHAVFVLVKTVDGEMGVYSGHEELIAV
                     LEIGEMKVRRVDDENHVDWIAVNGGIIEVNKDIITVISDSAERERDIDISRAERAKLR
                     AERELEEAQTARNIDMEMRATVALQRAINRIRVGKH"
BASE COUNT         2773 a         1770 c         2225 g         2740 t
ORIGIN      
        1 aagcgcaaat atagttagca ccctcaaatc atgatataat attcttatga aaacaagaat
       61 atcagaatta gttagcgtgc ttaatcaata cgctaaagag tattatcaat tggaccaacc
      121 tagcgtatca gatgcagaat atgatacgct ttatcgtgaa ttagtagagc tagaaacggc
      181 tcatccagaa ctgattttac cagatagtcc tacccatcgg gtcgggggaa agatgctaga
      241 cggatttgaa aaatatagtc atgtttatcc tctttttagt ttgcaggatg ccttttctcg
      301 tgaagagtta gaagcttttg accagcgagt tcgcaaggaa tttcctcaag caacgtatat
      361 ctgtgaattg aagattgatg gtctgtctat ttccctgacc tatgaagcgg gtaatttagt
      421 cgtgggtgct acacgtggtg acggtagtgt cggtgaaaat atcacagaaa atctcaaacg
      481 agtggctgat gttcctttga ccttacccga agctgtggac atcactgtcc gaggtgagtg
      541 ttatatgcca aaagcttcct ttgaccgtgt taacaaacag cgtcaggagg ctggtgaagc
      601 tgaatttgct aatccgcgta atgcagcagc agggaccctc cgccagcttg atacgggagt
      661 ggtggcccag cgtggtctcg ctactttcct ctaccaagag gctagtccat ctgaagcgac
      721 tagtcagtca caagtactgg agaaactgga tgctctggga tttgtgacca accacgaata
      781 ttgcttggcg gagtcgattg atgacacgtg ggattttatt gaaaaaatag cagagcgtag
      841 agatgattta ccctatgaga tagatggtgt tgtcatcaag gtaaatgatt tagctataca
      901 agaagaacta ggatttacag ttaaagcacc acgatgggca gtagcttaca agtttccagc
      961 tgaggaaaaa gaagcagaaa tcttgtcggt tgattggact gttggccgaa caggtgttgt
     1021 gacaccaacg gccaatctta gtcctgttca actggcagga acgactgtca gtcgagcaac
     1081 tttgcataac gtagattata tcgccgaaaa agatattcgt attggcgata cggtcattgt
     1141 ttataaggcg ggagatatta ttccagcagt tctgaaagtg gtggacaagt atcgaaaaga
     1201 gcaagaaatc atgcccattc ctagtcattg tccgtcttgt cagagcgacc tacaacacta
     1261 tgaggacgaa gttgccctcc gctgtatcaa ccctatttgt cctagccagc tgatgagtaa
     1321 gttggaacat tttgcaagtc gggatgctat gaatatcgca gggctagggt cttcaatcgt
     1381 tgaaaaactc tttggagcag gcttggtaca cgatgttgct gatatttata aattaactgt
     1441 tgatgaccta ttgaccttgg aaggtttcaa agaaaaatca gctgacaagc tctatcaagc
     1501 cattcaaact tctaagagta actcagcaga atgcctccta tttggactag gtattcgcca
     1561 tgtaggtagt aaggcaagta agattttagt agaaaaattt ggtgatttag aaactctagc
     1621 atttgctgat caagaagcaa ttgctttgct agaaggtctt ggtcaggtta ttgctaagtc
     1681 tttgacaact ttttttgcta gtgagggtgc gcaacaactt ttagccgaac ttaaggaagc
     1741 taaggtaaac ttaacctatc tcggacaagt agtagatgaa aatgctgcgc tatcgggtat
     1801 gacagttgta ctgactggta aattggagcg aatgaaacga aacgaagcca aagccaaatt
     1861 agaagcttta ggggcaaatg tggcgggatc tgtttctaaa aaaactaatc ttgtggttgc
     1921 cggaacagat gcaggcagta aattgaccaa agcacaggag ctaggtatcg aaattaaaga
     1981 tgaggcttgg ttagagagct tgtaaaggta aaacgatgga agaaagaaaa cgtgctagac
     2041 taatatataa tccgacctca ggtcaagaaa tcatgaagaa aaatgtggcc gaagtattgg
     2101 aaattttgga aggctacggt tatgaaactt cagctttcca aacaactgct gagaaagact
     2161 ctgcaaagaa tgaagctaca cgtgcggcgc ttgcagactt tgacttgatt atcgcggctg
     2221 gtggagatgg aacaatcaat gaagtcgtca atggaattgc tccgcttgaa aaacgtccgc
     2281 agatggccat cataccgact ggcaccacca atgactatgc gcgtgcctta aaagtgccta
     2341 ggggaaatcc tgtagaagca gctaaggtta tcggtaagca gcagaccatt ttaatggata
     2401 ttggtttagc caaaaatcaa aaaaatggtt ttcatcaaga acattatttt atcaatattg
     2461 ctgcggcagg tacacttacg gagttgacct acagtgttcc cagtcaactt aagaccatgt
     2521 ttggctattt ggcctatgta gtaaaaggag cagaactcct gccacaagta caatttacac
     2581 ctgttcgtgt agagcatgac gagggagtat ttgaaggctc ggtttcaatg atttttgtcg
     2641 ccttaaccaa ttcaattgga ggttttgaac agattgttcc cgatgctaag ttagatgatg
     2701 gtaattttac cttattgatg gttaaaacag ggaatctatt tgaaattctg catctgattc
     2761 gtcaagtctt agacggtggc aaacacattg agagtgattt agttgaatac ataaaaacca
     2821 agagcctatc catcgaaaat ctgaacccag ataaccgtct actgctcaat ctagatggag
     2881 agtttggtgg ggaagcccct gtacgtctgc acaacctatc aaaccatata gagtttttcg
     2941 cagatacaga tctggtttct gaccatgcaa tcactcttga tactgatcag atgaatcgag
     3001 aagatatggc caaacgattc attgaagaaa cagaccatat tgatgaagct attaaatagg
     3061 aagaaaagat gaaatactct tttcttttta ttttacaaaa acgaattaaa cgcttacaat
     3121 ggcggtattt tcttgacaaa tagatgtttt aggagtatcc ttacatggta ttaaatttta
     3181 aaaggagaat tcgttatgag tttaggcgca ttggcccttg gattggcctg tcttggtgta
     3241 agtatcggtg agggactgtt ggtggcttca taccttagtt cgactgcacg tcaaccagaa
     3301 atgcaaagta aattgatggc tggtgtattt ttgggtgttg cctttatcga gggaactttc
     3361 ttcgtaacct tggctatgac atttgtcttg aaatagtaga aaatagagaa atagaaaagg
     3421 ggggaacctc cattggaaga acatttaagt ccaaccctta cccttggtcc cgtaaccttt
     3481 gacctgacca tggtattggt ttctgtcatt accatttcca ttattttctt acttgttttt
     3541 tgggctagtc gtcggatgga gctcaagcca aaaggaaaac agaatgtttt ggagtacgtt
     3601 tacgaattga ccatcaattt tacaaaaggg aatcttggcg atgcggaagc aaagcggtat
     3661 tccttgttct tctttacagt ctttactttt cttttggttg ccaataatct aggtttgatg
     3721 accaaattgg aaacagcaga aggacataat ttgtggactt ctccaacggc caatatggct
     3781 tacgatttcg gtttggcaac aattgcaaca gtattttgtc atgttgaggg tattcgtcgt
     3841 cgcggtttca aggcatacct caaatctttt gtgacaccct gggctatggc tccaatgaac
     3901 attttggaag aagtgaccaa ccttgtgtcg cttgctcttc gtctgtacgg taacatttat
     3961 gctggtgaag tgcttgtctc tcttcttcta caattatctc aacaaagtgc acttgcatat
     4021 ccaattgcct ttgctctgaa cgttgtttgg acagcatttt ctgtattcat ttcatgcttg
     4081 cagggatatg tatttatcat gttggtatct atgtacttaa ataaaaaaat cagtagtgag
     4141 agtgaatagg aaagggaaag acaactatgg caacaactat tacaatgcaa tctagtacca
     4201 ttcttggaaa ctttatcttg gtaacagcct catttgcagt acttattatt cttattcgtg
     4261 tttttgcatg ggataaaatt acaggtattt ttgaagaacg tgccaataag attgcgaacg
     4321 atattgatgc tgcagaagaa aaattaacag cagcagcaaa ccttgttcaa caacgtgaag
     4381 atgagttggt acagggacgt attgaaagtc aaaagattat tcaagacgcg gttgaacgcg
     4441 caaaactaga gaaaaaacgc attcttgagc aagcagatgt tgaaattcaa ggattgaagc
     4501 aaaaagctca attggaaatt gaagctgaaa aacgtgaagc acaagaaaac ttgcgtgttc
     4561 aagttgctga attggcagtt gatcttgcaa gcaaaattat tttggaagat ttggaccaac
     4621 aagctcatag taacttgatt gaccgttatt tggacaaact aggagacaag tagatgaacg
     4681 ctagagaaaa tgccatcgtg caaaaatatg ctctatcatt tgttgaaaaa gtcagtgatc
     4741 atgcagatat ttgggatatg tatgaccaga tttctgactt gatttccatc attcatgata
     4801 gtaagctgaa tcgaatcttg ctgtcagcga cagtatcgag agaagaaaag gctgactttg
     4861 taaggacggt acgtcaatct agtttctggc aaatcaatga cttgattgaa gatgttattc
     4921 gtgatggtca tgcagacttg cttcttgaaa cccttgagcg tgtccaatta caaatcagta
     4981 aatttaaaaa tgaatttgaa gcccgtgtgg tttcagtcta tccgttgaca gaagctcaaa
     5041 aagagcgtct ccgtcacttg gtagaacaac gattttcctt gcgtgtgcgc aatatcacgg
     5101 aagaacttga tcaaagtctc ctcggtggtt ttattgtaac ggttaaccat aaggtaatcg
     5161 atgcaagcgt tcggacacag ttgaaggacg ttagaaaaaa actttagaaa atagaaagtg
     5221 gtgttctttt gattaatgca caagaaatta gcgctttact aaaacaacaa attgaaggct
     5281 ttcagcctga ctttgactac acagagactg gtgtcgtaac ctatatcggt gacggtatcg
     5341 cccgtgcgca aggtcttgac aatgccatga gtggagagct tttggtattt gaaaatggca
     5401 ccattggtat ggcacaaaac ttagaaacca acgatgttgg tattatcatt ctcggacaat
     5461 ttactgatat tcgtgaaggg tcagttgttc gtcgtactgg taaaattatg gaagtaccag
     5521 ttggttcggc tttgattggt cgtgtcatca acccacttgg tcaaccggtg gatggtcttg
     5581 gtgaaattcg tactagtaag actcgtccga ttgaatatcc agcaccaggt gttatgcaac
     5641 gtaagtcggt taatgaaccg cttcaaactg gtcttaaggc tattgacgct ttggttccga
     5701 ttggtcgtgg tcagcgtgaa ttgattatcg gtgaccgtca gacagggaag acatctgtag
     5761 ctattgatgc tattctcaac caaaaaggcc aagacatgat ttgtatctat gtggctatcg
     5821 gtcagaaaga gtcaactgtt cgtactcagg ttgaaaccct tcgtcaatat ggtgctttgg
     5881 attacacaat cgtagtaacg gcatctgctt cacaaccgtc tccattgctt ttcttggctc
     5941 cttatgctgg tgttgcgatg gcagaagagt tcatgtatga aggcaaacac gtcttgattg
     6001 tttacgatga tttgtcaaaa caagcggtag cttaccgtga attatccctc ttgcttcgtc
     6061 gtcctccggg tcgtgaagcc tatccagggg atgtattcta cttgcacagt cgtttgctag
     6121 agcgttcagc aaaggtttca gatgaattgg gcggtggctc cattacagct ctaccattca
     6181 tcgaaacaca agcgggagat atttcagctt acatcgcgac caacgtgatt tctatcacgg
     6241 atggacaaat cttcttgaag gacgatttat tcaactctgg tatccgtcca gccattgatg
     6301 cgggttcttc tgtatcacgt gtaggtggct ctgcacagat taaggccatg aaaaaggtgg
     6361 caggtaccct tcgtatcgac ttagcttctt atcgtgaatt agaagccttt acgcaatttg
     6421 gttcggattt ggatgcagca actcaggcca aactcaaccg tggtcgtcgg actgtggaag
     6481 tgttgaaaca accattgcat aagccacttc cagttgaaaa acaggttttg attttgtatg
     6541 ctttgacaaa tggcttcttg gattcagtgc caattgacga tattttggca tttgaagaag
     6601 aactgtactc atattttgat ttgcactacg atggtctttt ggatgttatt cgtacaacaa
     6661 aagatcttcc tgatacagat gaattgaatg ctgctatcca agctttcaaa gaccagtctg
     6721 tctttaagta aaggagtgaa taatggcagg ttctctcaat gaaatcaagt caaaaattgc
     6781 atctactaag aaaaccagtc aaatcaccgg tgccatgcag atggtttcgg cttctaaact
     6841 agccaaatca gagcaattag cgcaatcctt tcaaatctac gctagcaagg ttcgtcagat
     6901 tacaacggat ctcttgcgtg gagaattgat ggcttcagat acaagcaatc caatgctgat
     6961 tcgtcgtcca gttcaaaaat ctggttatat tgtcattacc tctgacagtg gactaaaagg
     7021 ttcttataat tccagtattt tgaaggctgt gatggggatg attgaacagg accatgactc
     7081 aaaagatgag tatgagatta ttgccattgg tagtatggga gctgatttct tccgtgctcg
     7141 tggtatcaat cctgtctttg aattgcgtgg tttagcagac aatccaagtt ttgaagaggt
     7201 tcaaaaaatc atttctaagt ctgttgaaat gtacaagaat gaactctttg atgagttgta
     7261 tgtttgttat aaccaccatg tcaatagttt gaccagtcag gtgcgtgtac aacagatgct
     7321 tcctgtagaa gatttggacc acaatgaagc agatggttat acagctacct ttgagttgga
     7381 accaaaccgt gaggttattt tggaacaact cttgactcaa tatgcagaat caactattta
     7441 tggagcgatt ttggatgcca aaactgctga aaatgcagca ggtatgacag ccatgcagac
     7501 agcgacggat aatgctaaga atgtcattaa cgatttgaca atccaataca atagggctcg
     7561 tcaggcagcg attactcagg aaattactga gattgtagct ggtgcctcag cccttgagta
     7621 atagaaatag aggaaataga atgagttcag gcaaaattac tcaggttgtc ggaccagttg
     7681 tagacgttgc gtttgcagca gaagataaac ttcctgagat taacaacgca ctcgttgtat
     7741 ataaaaatga tgattccaaa caaaaagtcg tgcttgaagt ggctttggaa cttggtgatg
     7801 gcgttgtacg gaccattgcc atggaatcaa cggatggatt gacacgtggg atggaagttc
     7861 tcgatacagg tcgtcccatc tctgttccag tcggtaaaga aacgctgggg cgtgtcttca
     7921 atgtgttggg agataccatt gaccttgaag agtcttttcc ggcagatttt gaacgtgagc
     7981 ctatccataa gaaagcgccg gcttttgacg aattatctac ttcaagcgaa attttggaaa
     8041 cagggattaa ggttatcgac ctcctagcac cttatctaaa aggtggtaag gttggtctct
     8101 tcggtggtgc cggtgttggt aaaaccgtcc ttatccaaga attgattcac aatattgcac
     8161 aagaacacgg tggtatctct gtatttaccg gagttggcga gcgtacccgt gaagggaacg
     8221 atctttactg ggaaatgaaa gaatcaggtg ttattgaaaa aacggccatg gtatttggtc
     8281 agatgaatga gccaccagga gcccgtatgc gtgttgctct tactggtttg accattgcgg
     8341 aatacttccg tgatgtggaa gggcaggatg ttcttctgtt catcgataat atcttccgtt
     8401 tcacacaggc tggttcagaa gtgtctgccc tcttgggtcg tatgccatca gccgttggtt
     8461 atcagccaac acttgcaact gagatgggac aattgcagga gcgtattacc tcaaccaaga
     8521 agggttctgt tacatctatt caggctattt acgtacctgc ggatgactat acagacccag
     8581 ctccagcgac agccttcgct cacttggatt caacaactaa cttggagcgt aagttgactc
     8641 agcttggtat ctaccctgcg gtggatccat tggcttcgtc atcacgtgct cttgctccac
     8701 aaatcgttgg tgaagagcac tatgcagtag ctatggaagt aaaacgtgtc cttcaacgtt
     8761 accaagaatt gcaagatatt attgccattc tcggtatgga tgaattatca gatgaagaga
     8821 agaccttggt tggtcgcgct cgtcgtatcc aattcttcct ctctcaaaac ttcaacgttg
     8881 cggagcaatt tacaggtatg ccaggttctt atgtgccagt agctgaaacg gtgaaaggct
     8941 ttaaggaaat cttggacggc aaacacgacc atctaccaga agatgccttc cgaaatgttg
     9001 gttcaattga ggatgtggtc gctaaagctg ctaaaatgaa attctagagg tggcttatgg
     9061 gacaaatgac tgtacaaatc gtaacaccag acggtatcaa atatgaccat catgcagtat
     9121 ttgttttggt caaaacggtt gatggtgaga tgggtgtcta ttctggacat gaagaattga
     9181 ttgcagtttt ggaaatcggt gaaatgaaag tgcgtcgtgt tgatgatgaa aaccatgtag
     9241 actggattgc ggtcaatggt ggaatcattg aagtcaacaa ggatattatt acggtcattt
     9301 ctgattccgc tgagcgggaa cgggatattg atattagtcg tgcagaacgt gccaaattgc
     9361 gcgcggaacg tgaattggaa gaagcacaga ctgctcgtaa tattgatatg gagatgcgtg
     9421 caacagtcgc cctccaacgt gcgataaatc gtattcgtgt tgggaaacat taatctatat
     9481 gggattgaac ttggttcagt tccatttt
//
LOCUS       DASGCC010000076         9485 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.076, whole genome shotgun sequence.
ACCESSION   DASGCC010000076 DASGCC010000000
VERSION     DASGCC010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9485
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.076"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(1..405)
                     /locus_tag="U1404_001316"
     CDS             complement(1..405)
                     /locus_tag="U1404_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM5348267.1"
                     /translation="MAGRKISPQSLKNLYQSNKEANQLTKESIETALLFLLEKKELKQ
                     ISVSELVRKAGVSRNAFYRNYKSKEEILEDYYERTSSNLKKKWHDLQDKVQKDGVKQS
                     FADFVQEQKRKAEQSKALSNVSQWIKEKTKRD"
     gene            532..1383
                     /locus_tag="U1404_001317"
     CDS             532..1383
                     /locus_tag="U1404_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5348268.1"
                     /translation="MTKWKIVADSGCDYRQLANLAPDTEFISVPLTIQVGEQAFVDDA
                     SLDIDHMMEVMEASKSAAGSACPSPQAYQAAFEGAENIIVVTITGGLSGSFNAARVAR
                     DMYIEEHPNVNIHLIDSLSASGEMDLLVDEINRLIGAGLDFPQVVEAITHYREHSKLL
                     FVLAKVDNLVKNGRLSKLVGTVVGLLNIRMVGEASAEGKLELLQKARGHKKSVTAAFE
                     EMKKAGYDGGRIVMAHRNNAKFFQQFSELVKASFPTAVIDEVATSGLCSFYAEEGGLL
                     MGYEVKA"
     gene            complement(1482..2741)
                     /locus_tag="U1404_001318"
     CDS             complement(1482..2741)
                     /locus_tag="U1404_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEM5348269.1"
                     /translation="MKKYQVIIQDILTGIEEHRFKRGEKLPSIRQLSEQYHCSKDTVQ
                     KAMLELKYQNKIYAVEKSGYYILEDRDFQDHTVELNPADFQELPYEDFRICLNESLIG
                     RENYLFNYYHQQEGLAELISSVQSLLMDYHVYTKKDQLVITAGSQQALYILTQMETLA
                     GKTEILIENPTYSRMIELIRHQGIPYQTIERDLDGIDLEELESIFQTGKIKFFYTIPR
                     LHNPLGSTYDIATKTAIVKLAKQYDVYIIEDDYLADFDSSHSLPLHYLDTDNRVIYIK
                     SFTPTLFPALRIGAISLPNQLRDTFIKHKSLIDYDTNLIMQKALSLYIDNGMFARNTQ
                     HLHHIYHAQWNKIKDCLEKYALNIPYRISKGSVTFQLSKGILSPSIQHMFEKCYYFSG
                     QKADFLQIFFEQDFADKLEQFVRYLNE"
     gene            2864..3598
                     /gene="yaaA"
                     /locus_tag="U1404_001319"
     CDS             2864..3598
                     /gene="yaaA"
                     /locus_tag="U1404_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEM5348270.1"
                     /translation="MKIIIPNAKEVNTNLENASFYPLPDRSKPVLDAISQFDVKKMAA
                     FYKLNEEKAELEADRWYRIRTGQAKTYPAWQLYDGLMYRYMDRRGIDSKEENYLRDHV
                     RVATALYGLIHPFEFISPHRLDFQGSLKIDNQSLKQYWRPYYDQEVGDDELILSLASS
                     EFEQVFSPQIQKRLVKILFMEEKAGQLKVHSTISKKGRGRLLSWLAKNNIQELSDIQD
                     FKVDGFEYCTEKSTENQLTFIRSVKI"
     gene            3728..5167
                     /locus_tag="U1404_001320"
     CDS             3728..5167
                     /locus_tag="U1404_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5348271.1"
                     /translation="MKKRSRWRKSPKLKLVNFALWVLYAIILCLFLVTMYRYNILDFR
                     YLNYIVTILLIGVAVLTGLLMWRKKARIFTALVLIFSLVITSVGIYGMQEVVKFSTRL
                     NSNSAFSEYEMSILVPVNSEITDVRQVTNVLAPAEYDQDNITALLNDISKMESTQLAT
                     SPATSYLTAYQSMLNGESQAMVFNGVFTNILENEDPGFSSKVKKIYSFKVTQTVETAT
                     EQVSGDSFNIYISGIDTYGPISSVSRSDVNIIMTVNRATHKILLTTTPRDSYIAIADG
                     GQNQYDKLTHAGIYGVNASVHTLENLYGIDISNYIRLNFTSFLQLIDLVGGIDVENTQ
                     EFTSGGYNFPVGTVHLDAEQALIFVRERYSLANGDNDRGQNQEKVIAALIKKLRSPDN
                     LANYQAILTGLEGTIQTDLSLETIMGLVNTQLESGTQFTVESQAVTGTGRSDLSSYAI
                     PGSQLYMMEINQDSLEQAKAAIQSVLDGN"
     gene            5183..5872
                     /locus_tag="U1404_001321"
     CDS             5183..5872
                     /locus_tag="U1404_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein CpsC"
                     /protein_id="HEM5348272.1"
                     /translation="MNNQESNTIEIDVLSLLKTIWRKKIFILVTAVLGAGLAFVYSSF
                     LVTPQYDSTTRIYVVSQNVEAGAGLTNQELQAGTYLVKDYKEIILSQDVLTQVATELN
                     LNENLKEKVSVSIPVDTRIVSISVRDADPNEAARIANSLRTFAVQKIVEVTKVSDVTT
                     LEEAVPAEEPTTPNIKRNIILGLLAGGILATGLVLVMEVLDDRVKRPQDIEEVMGLTL
                     LGVVPDSKKLK"
     gene            5882..6568
                     /locus_tag="U1404_001322"
     CDS             5882..6568
                     /locus_tag="U1404_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HEM5348273.1"
                     /translation="MATLEIARKKKELVNKTEEYFNAIRTNIQLSGADIKVVGITSVQ
                     SNEGKSTTATSLALAYARSGYKTVLVDADIRNSVVSGFFKPMTKITGLTDYLAGTTDL
                     SQGLCDTDIPNLTAIESGKVSPNPTALLQSKNFENLLATLRRYYDCVIVDCPPLGLVI
                     DAAIIAQKCDAMVLVAEAGNVKRSSLKKVKEQLDQTGTPFLGVILNKYDIATEKYGEY
                     GNYGNYGKKA"
     gene            6607..7338
                     /locus_tag="U1404_001323"
     CDS             6607..7338
                     /locus_tag="U1404_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine protein phosphatase"
                     /protein_id="HEM5348274.1"
                     /translation="MIDIHSHIIFGVDDGPKTIEESLSLIGEAYRQGVRYIVATSHRR
                     KGMFETPEKVIMANFLQLKEAVAEVYPEIRLCYGAELYYSKDILSKLEKKKVPTLNGS
                     RYILLEFSMNTPWKEIQEAVNEVMLLGLTPVLAHIERYDTLAFHAERVEELIDKGCYT
                     QVNSNHVLKPALIGDRAKEFKKRTRYFLEQDLVHCVASDMHNLSSRPPFMREAYKLIT
                     EEFGKDKAKALLKKNPLMLLKNQAI"
     gene            7368..9194
                     /locus_tag="U1404_001324"
     CDS             7368..9194
                     /locus_tag="U1404_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM5348275.1"
                     /translation="MDLETVIDKLLERNIKRLILMCMDTCLIIVSMILSRLFFDVIID
                     IPDERFIFAVLFVLIFYLIISVRLKVFSLITRYTGYQSYVKIGLSLISAYSLFLIISM
                     ILWQTFSYRFILVSLFLSYVMLITPRIVWKVLHETRKNAIRKKDNPLRILVVGAGDGG
                     NIFINTVEDRKLNFEIVGIVDRDPNKLGTFIRTAKVLGNRNDIPRLVEKLAVDQVVIA
                     IPSLNGKEREKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVADLLGRLEVVL
                     DQDELNQFFKGKTILVTGAGGSIGSELCRQIAKFTPKCLLLLGHGENSIYLIHRELLE
                     KYQGKIELVPLIADIQDRELIFSIMAEYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIF
                     GTKNVAEAAKTAKVAKFVMVSTDKAVNPPNVMGATKRVAEMIVTGLNEPGQTQFAAVR
                     FGNVLGSRGSVVPLFKEQIRKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEI
                     FVLDMGEPVQILELARKVILLSGHTEEEIGIVESGIRPGEKLYEELLSTEERVSEQIH
                     EKIFVGRVTNKQSDIVNSFINGLLQKDRNELKDMLIEFAKQE"
BASE COUNT         2938 a         1546 c         2092 g         2909 t
ORIGIN      
        1 ttaatcccgt tttgtttttt ccttgatcca ttgactgacg ttggacaggg ccttgctttg
       61 ctctgccttg cgtttttgtt cctggacaaa atctgcaaag ctttgcttga cgccgtcctt
      121 ttgaaccttg tcctgcaaat catgccattt ctttttaagg ttgctggaag tccgttcgta
      181 gtagtcttca aggatttctt ccttggactt gtaattgcgg tagaaggcat tgcgtgacac
      241 accagctttt cggaccaatt cagataccga aatttgcttg agctcctttt tctctaggag
      301 aaatagcaga gcagtttcta ttgattcctt agtcagttga ttcgcttctt tatttgattg
      361 atagaggttt ttcaaagatt ggggtgaaat tttacgacct gccatagttt tccttttccg
      421 agtgtcacat ctgaaagaaa atgctttcag atggggtagt ttaatgatat aattgtaagt
      481 aaatagagat ttattgtcaa ataaaaaaat aaaattggaa atgagaatat tatgacaaaa
      541 tggaaaatcg ttgcagattc gggctgcgac tatcgtcaat tagctaatct agctccggac
      601 actgaattta ttagtgtgcc acttaccatc caagttggag aacaagcatt tgttgatgat
      661 gcaagcttgg atattgatca catgatggag gtgatggaag catctaagtc tgcagcgggg
      721 tcggcgtgcc caagtccgca ggcttatcag gcagcttttg agggagctga gaacattatc
      781 gttgtgacga ttacaggtgg gctatctggt agttttaatg cggcacgtgt agctagggat
      841 atgtatatcg aagagcatcc gaatgtcaat atccatttga tagatagttt gtcagccagt
      901 ggggaaatgg atttacttgt tgacgaaatc aatcgcttaa ttggtgcagg attagatttt
      961 ccacaagtag tagaagcgat aactcactat cgggaacaca gtaagctcct ctttgtttta
     1021 gcgaaggttg ataatcttgt taagaatgga agactgagca aattggtagg cactgtcgtt
     1081 ggtcttctca atatccgtat ggttggtgag gcaagcgctg aaggaaaatt agagttgctt
     1141 caaaaggcgc gtggtcataa gaaatctgtg acagcagcct ttgaagaaat gaaaaaagca
     1201 ggttatgatg gtggtcgaat tgtcatggcc caccgcaaca atgctaagtt cttccaacaa
     1261 ttctcagagt tggtaaaagc aagttttcca acggctgtta ttgacgaagt tgcaacatca
     1321 ggtctatgca gtttttatgc tgaagaaggt ggacttttga tgggctatga agtgaaagcg
     1381 tgattcacag agtaacaatt ttgggatgta atttccacta tagaataatc cccctcgtct
     1441 tctaagttcg agggggattg tttgtatgag actattggat ttcattcatt caaatatctt
     1501 acgaattgct ccagtttatc tgcaaaatct tgttcaaaga agatctgtaa gaaatcagct
     1561 ttctgtccgc tgaaataata acacttttca aacatgtgtt ggatgctagg cgaaagaatc
     1621 cccttgctta gctgaaaggt cacgctccct ttggaaattc gatacgggat gttcaaagcg
     1681 tatttctcta aacaatcttt tattttattc cactgagcgt gataaatgtg atgaagatgc
     1741 tgtgtgttcc gtgcaaacat accgttatca atgtagagtg agagagcttt ttgcatgata
     1801 agattggtat cgtagtcgat tagactctta tgtttgatga aggtatcacg tagctggtta
     1861 ggaaggctga ttgcaccgat tcggagggca ggaaagagtg tcggtgtaaa agattttata
     1921 tagatgacgc gattatctgt atcaagatag tgtaaaggta ggctatgact agagtcgaaa
     1981 tccgccaaat agtcatcctc aatgatgtag acatcgtatt gctttgctaa ttttacgatg
     2041 gctgtttttg ttgctatatc ataggttgaa ccgagagggt tgtgcaagcg aggaattgtg
     2101 tagaaaaact taatttttcc agtttggaag atactttcca attcttctag gtcaattcca
     2161 tctaaatccc gttcaattgt ttgatagggg attccttgat gtcgaatgag ctctatcatt
     2221 cgtgaatagg tagggttctc tatcaagatt tccgtttttc cagccaaggt ttccatttgt
     2281 gtgagaatat atagagcttg ttgactacca gctgtgataa ccagttggtc tttttttgta
     2341 tagacatgat agtccattaa cagactttga acggaggaaa tcaattctgc caatccctct
     2401 tgctggtgat agtagttgaa taggtaattt tcccggccaa taagactttc gtttagacaa
     2461 atccgaaaat cttcataggg taattcttga aagtctgcag gattgagctc tacagtatgg
     2521 tcttggaaat ctctatcttc taagatataa taaccgcttt tttcgacagc gtagatctta
     2581 ttttggtatt ttaattccaa catagccttt tggacagtgt ctttgctaca atgatattgc
     2641 tcgctgagtt gacggataga aggtaatttc tctccacgtt tgaatcggtg ttcctctatt
     2701 ccagtcaaaa tatcttggat gataacttga tattttttca tctaggcccc cttttttata
     2761 gactatgtta ctagatagta tataggaaaa attgaagaaa gacaatatat gaataatggg
     2821 gttgaggttc aggaattaag ctactatatg gtataattaa gtgatgaaaa taattatacc
     2881 taatgcaaaa gaagtaaata caaatctaga gaatgcctcg ttttatcccc tgcctgatcg
     2941 aagtaagccg gtgctggatg ccataagtca atttgatgta aaaaagatgg ctgcttttta
     3001 taaattgaat gaagaaaagg ctgagttaga agctgaccgt tggtatcgaa tcaggacagg
     3061 tcaagcaaaa acttatccag cctggcagtt atatgatggt ctcatgtatc gttatatgga
     3121 taggcgaggt atagattcga aagaagaaaa ttatctacgt gaccatgttc gtgtagcgac
     3181 agccttatac ggattgattc atccttttga attcatttca cctcaccgct tagattttca
     3241 agggagctta aagatagaca atcagtcttt gaaacagtac tggcgaccgt attatgacca
     3301 agaagttggt gacgatgaac tgattctctc actggcttcg tcagaatttg agcaggtgtt
     3361 ttctccacag attcagaaaa gattagttaa aattcttttc atggaagaaa aagcaggtca
     3421 gctaaaagtt cactcgacta tatcaaaaaa aggtagagga agattgctgt cctggttggc
     3481 taagaacaat attcaggaat tatcggacat tcaagatttt aaggtggatg gctttgaata
     3541 ttgtactgaa aaatcaacag agaatcagct gactttcata cgctcagtta aaatatgaaa
     3601 aaaagaacaa gttatgaaca agattgaaca agataacgtt tttcatcact aaatatggct
     3661 atgtggctag taaaatattg ttttttgtga tacaataggt gagttataag taaaaggaag
     3721 gttgtttatg aagaagagaa gcagatggag gaaatcgcct aagcttaagt tggtaaattt
     3781 tgcgctttgg gtgctatatg ccattattct atgtctgttc ttagtgacta tgtatcgcta
     3841 taacatccta gattttcggt atttgaacta tattgtaaca atcctgttga taggggttgc
     3901 agtattgact ggcttgttga tgtggcgtaa gaaagcacgc atatttacag cactcgtact
     3961 tattttttca cttgtcatca cttctgtcgg aatctatgga atgcaagaag ttgtaaaatt
     4021 ttcaacacga ctaaattcaa attcggcatt ttcagaatat gaaatgagca tcctcgtccc
     4081 agtaaatagt gagattacag atgttcgaca ggtcactaat gtacttgctc cggctgaata
     4141 cgatcaagac aacatcactg ctttattaaa tgatatttcc aaaatggagt ctactcaact
     4201 agcaactagc cccgcgacct cttacctgac agcatatcaa tctatgttga atggcgagag
     4261 tcaagcgatg gtgttcaacg gagtttttac caatatttta gaaaatgaag atccaggctt
     4321 ttcttcaaaa gtgaaaaaaa tatatagttt caaagtgact cagactgttg aaacagctac
     4381 tgagcaggtg agtggagaca gttttaatat ctatataagt ggtatagata cttacggtcc
     4441 aatttcatct gtttcgcgtt cagatgtcaa tatcattatg actgtcaatc gtgcgacaca
     4501 taagatttta ttgacaacta ctccacgaga ttcatacatt gctattgcag atggtgggca
     4561 aaatcaatac gataaactaa cacatgctgg gatttatggt gttaacgcct cagtgcacac
     4621 cttagaaaat ctttatggta ttgacattag taactatatc cgactcaact ttacttcctt
     4681 cttacagttg attgatttgg ttggtggtat tgatgttgaa aatacccaag aatttacaag
     4741 cggagggtat aatttccctg ttgggacagt gcatctagat gcagagcaag cgctaatctt
     4801 tgttcgtgag cggtattcgt tggctaatgg tgataatgat cgcggtcaaa accaagaaaa
     4861 agtcattgca gccctcataa aaaaattgag gtcaccagat aatctagcga attatcaagc
     4921 tattctaact ggtttggaag gaactatcca aacagatttg agcttagaaa cgattatggg
     4981 cttggtaaat acccaattag aatcaggaac acaatttaca gtagagtcac aagcagtgac
     5041 aggaacagga cgctcagatt tatcttctta tgcgatacct ggttcacaac tttatatgat
     5101 ggaaattaac caagatagtc tggagcaagc aaaggcagcg attcagtcag tattggatgg
     5161 aaattaaaaa ataggagaaa acatgaataa tcaagaatca aatacaatcg aaattgatgt
     5221 attatcatta ttgaaaacaa tctggagaaa aaaaatcttc attctagtaa ctgcggtatt
     5281 aggagcaggg ctggcatttg tttatagcag ttttttggta actccacaat atgactccac
     5341 tacccgtatc tatgtagtga gtcaaaatgt tgaagctggt gcgggcttga ctaaccaaga
     5401 gttacaagca ggtacctatt tggtaaaaga ctataaggaa attatcctat cacaagatgt
     5461 attgacgcag gtagctacag agttgaactt gaacgagaac ttaaaagaaa aggtttcagt
     5521 ttctatccct gtcgatactc gtatcgtttc tatctccgtg cgtgatgcgg atccaaatga
     5581 agcggcacgt atcgcaaata gtcttcgtac ctttgcggtg caaaagattg ttgaggtcac
     5641 taaggtaagc gatgtgacaa cacttgaaga agcagtccca gcggaggaac caaccactcc
     5701 aaatataaaa cgaaatatca tacttggctt attagctggt ggtatcttgg caacaggtct
     5761 tgtactggtt atggaggttt tggatgaccg tgtcaaacgc cctcaggata ttgaagaggt
     5821 aatgggcttg accttgcttg gtgtagtacc agattcgaag aaattgaaat aggagaacaa
     5881 tatggcaacg ttagaaattg cacgtaagaa aaaagaattg gtaaataaga ctgaagaata
     5941 tttcaatgcc atccgtacca atattcagct tagcggagcg gatattaagg ttgtaggcat
     6001 tacctctgtt caatcgaatg aaggtaagag tacaactgcg actagtctcg ctcttgccta
     6061 tgctcgttca ggttataaga ccgttttggt ggatgcagat atccgaaatt cagtcgtgtc
     6121 tggtttcttc aagccaatga caaagattac aggcttgacg gattacctag cagggacaac
     6181 agacttgtct cagggattat gcgatactga tattccaaac ttgaccgcca ttgagtcagg
     6241 aaaggtttca cctaacccta ctgccctttt acaaagtaag aattttgaaa atttacttgc
     6301 gactcttcgt cgctattatg attgtgttat cgttgactgt ccaccattag gactggtaat
     6361 tgatgcagct atcattgcac agaaatgtga tgcgatggtg ctggtagcag aagcaggcaa
     6421 tgttaagcgc tcatctttga aaaaagtaaa agagcagttg gatcaaacag gcacaccgtt
     6481 cttaggcgtt atcttgaaca aatatgatat tgccaccgag aagtatggtg aatacggaaa
     6541 ctacggaaat tacggcaaaa aagcttaatt tctcagataa tataagtttg ataagtaggt
     6601 attagtatga ttgatattca ttcgcatatc atatttggtg tagatgacgg ccccaaaact
     6661 attgaagaaa gtctgagttt gataggcgaa gcttatcgtc aaggtgttcg ctatatcgtg
     6721 gcgacatctc atagacgaaa agggatgttt gaaacaccag aaaaagtcat catggctaac
     6781 tttcttcaac ttaaggaagc agtagcagaa gtttatcctg aaatacgatt gtgctatggt
     6841 gctgaattgt attatagtaa agatatctta agcaaacttg aaaaaaagaa agtaccaaca
     6901 cttaatggct cgcgctatat tctcttggaa ttcagtatga atactccttg gaaagagatt
     6961 caagaagcag tgaatgaagt gatgctactt gggctaactc ccgtacttgc tcatatagaa
     7021 cgatatgata ccctagcgtt tcatgcagag agagtagaag agttaattga caagggatgc
     7081 tatactcagg taaatagtaa ccatgtgctg aagcccgctt taattggtga tcgagcaaaa
     7141 gaatttaaaa aacgtactcg gtacttttta gagcaggatt tagtacattg tgttgctagt
     7201 gatatgcata atttatctag tagacctccg tttatgaggg aggcttataa gttaataaca
     7261 gaggaatttg gcaaagataa agcgaaagcg ttgctgaaaa agaatcctct tatgctatta
     7321 aaaaaccagg cgatttaaac tggttactct agattgtgga gagaaaaatg gatttagaaa
     7381 ctgttatcga taaactttta gagcgcaaca ttaaacgatt gatactcatg tgcatggata
     7441 cgtgtcttat tatagtttcc atgattttga gcaggctgtt ttttgatgtt attattgaca
     7501 ttccagatga acgctttatt tttgcagttt tatttgtttt aatattctac ctgattatct
     7561 cagttagact aaaggttttt tcgctaatta cgaggtatac tggatatcaa agttatgtga
     7621 aaataggact gagtttgata tccgcttatt cattattttt aatcatttca atgattctat
     7681 ggcagacctt tagttatcgt ttcatcttag tatccttatt tttgtcgtat gtaatgctca
     7741 ttactccgag gattgtttgg aaagtcttac atgagacgag aaaaaatgcc attcgaaaga
     7801 aggataaccc actaagaatc ttagtagtag gtgctggaga tggtgggaat atttttatca
     7861 ataccgtcga agatagaaaa ttgaattttg aaattgtcgg tatagttgat cgtgatccaa
     7921 ataaacttgg aacatttatc cgtaccgcta aagttttagg aaaccgtaat gatattccac
     7981 gattggtaga gaaattagct gttgaccaag tggtgattgc catcccttct ttaaatggta
     8041 aggagcgaga gaagattgtt gaaatctgta acactacagg agtgaccgtc aataatatgc
     8101 cgagcattga agacattatg gcgggtaaca tgtctgtcag tgcctttcag gaaattgacg
     8161 tagcagacct tcttggtcga ctagaggttg ttttggatca ggatgaattg aatcagtttt
     8221 tcaaagggaa aactatcctt gtcacaggag caggtggctc aatcggttca gagttatgtc
     8281 gtcaaattgc taagtttacg cctaaatgct tgttgttgct tggtcatgga gaaaattcaa
     8341 tctatctcat tcatcgagag ttactggaaa agtaccaagg taagattgag ttggtccctc
     8401 tcattgcaga tattcaagat agagaattga tttttagcat aatggctgaa tatcaacccg
     8461 atgttgttta tcatgctgca gcacataagc atgttccatt gatggaatat aatccacatg
     8521 aagcagtgaa gaataatatt tttggaacga agaatgtggc tgaggcggct aaaactgcaa
     8581 aggttgccaa atttgttatg gtttcaacag ataaagctgt taatccgcca aatgtcatgg
     8641 gagcgactaa acgtgttgca gaaatgattg taacaggttt aaacgagcca ggtcagactc
     8701 aatttgcggc agtccgtttt gggaatgttc taggtagtcg tggaagtgtt gttccgctat
     8761 tcaaagagca aattagaaaa ggtggacctg ttacggttac cgactttagg atgactcgtt
     8821 atttcatgac gattcctgag gcaagtcgtt tggttatcca agctggacat ttggcaaaag
     8881 gtggagaaat ctttgtcttg gatatgggtg agccagtaca aatcctggaa ttggcaagaa
     8941 aagttatctt gttaagcgga catacagagg aagaaatcgg gattgtagaa tctggaatca
     9001 gaccaggcga gaaactctac gaggaattgt tatcaacaga agaacgtgtc agcgaacaga
     9061 ttcatgaaaa aatatttgtg ggtcgcgtta caaataagca gtcggacatt gtcaattcat
     9121 ttatcaatgg attactccaa aaagatagaa atgaattaaa agatatgttg attgaatttg
     9181 caaaacaaga ataagaaagt aaaaaatatt tttactttcc tagagtttaa acgatgttta
     9241 agttctagga aggttggaat tgctttcgtg gaggtgatag atagaaacct atatatttgt
     9301 agaagaaagg atattaaact aaaggtgaat cggaacataa agtttagata gagttggtat
     9361 ttaatgccaa acaggtgaat gcaacctctc gctcgttact aagcaggaga tagtaaagtt
     9421 gcttgaaaga gagtttgtta atcagtataa gtaggctaaa gtgagaatat atatctatta
     9481 ttatc
//
LOCUS       DASGCC010000077         9445 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.077, whole genome shotgun sequence.
ACCESSION   DASGCC010000077 DASGCC010000000
VERSION     DASGCC010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9445
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.077"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            27..572
                     /locus_tag="U1404_001325"
     CDS             27..572
                     /locus_tag="U1404_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348276.1"
                     /translation="MVGITGINGSGKSVLFKLIAGLMQPNSGTIKVYGEDIVGKIPSG
                     LGALIEEPGFIPNYSGFENLEFLSTIQNIIGKEEILATLHRVGLFEDKDKKVRNYSLG
                     MKKKLGIAQAIMEEPRILLLDEPTNALDSQSVQRVYDLLKELSKEKGVTVLLASHNDS
                     DIRHLCDKVYLLENKQCKLLK"
     gene            827..1096
                     /gene="rpsO"
                     /locus_tag="U1404_001326"
     CDS             827..1096
                     /gene="rpsO"
                     /locus_tag="U1404_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEM5348277.1"
                     /translation="MAISKEKKNEIMAQYARHEGDTGSVEVQVAVLTWEINHLNDHIK
                     QHKKDHATYRGLMKKIGRRRNLLAYLRRTDVNRYRELIHSLGLRR"
     gene            1487..3706
                     /gene="pnp"
                     /locus_tag="U1404_001327"
     CDS             1487..3706
                     /gene="pnp"
                     /locus_tag="U1404_001327"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEM5348278.1"
                     /translation="MSKQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAV
                     MSKKMATGDFFPLQVNYEEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFA
                     EGFRNEVQVINTVLSYDPDASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELI
                     INPDKAQMEESLLDLTVAGNKDAINMVESGAKELSEDIMLEALLKGHEAIQELLDFQN
                     QIVAAVGKEKADVELLQVDPELQAEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVI
                     AAYEEKYAEHEEFDRIMRDVHEILELMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEV
                     DFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLGDEYKKRFLHHYNFPQYSVGS
                     TGRYGAPGRREIGHGALGERALEQVLPSLEDFPYAIRLVAEVLESNGSSSQASITAGT
                     LALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTRDGITAL
                     QMDIKIDGITPQILEEALAQAKKARFEILDVIEATIPEVRPDLAPTAPKIDTIKIDVD
                     KIKIVIGKGGETIDKIIAETGVKIDIDEDGFVAIFSPDRDAIERTKEIIAGLVREAKV
                     DEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKPEDLVEIGDIVDVKVIKI
                     DDKGRVDASMKALLPKPEGYVEPEKRERSDKPRRPRDHKEKKDNNFGEFKFHKVEKK"
     gene            3759..4376
                     /gene="cysE"
                     /locus_tag="U1404_001328"
     CDS             3759..4376
                     /gene="cysE"
                     /locus_tag="U1404_001328"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000539958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEM5348279.1"
                     /translation="MGWWKDTIEIVKEKDPAARTTLEVLLTYPGVKALAAHRLSHWMW
                     KKGFKLLARMHSQFWRFWTNIEIHPGAEIASGVFIDHGAGLVIGETAIIESGVMLYHG
                     VTLGGTGKDCGKRHPTVRKGALVSAHAQVIGPIEIGENAKVGAAAVVLADVPADVTVV
                     GMPAKIVRVHGQKDEKVIHDMEGGREHYTTKLAELREASHHSSHL"
     gene            4432..5292
                     /locus_tag="U1404_001329"
     CDS             4432..5292
                     /locus_tag="U1404_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348280.1"
                     /translation="MILATNVLNPQQLSAAKTLISTVQSHDGTYRDPYLSNMLNFDPE
                     MPAFFLAYQDQQLVGLLTVYADDEDVELAILVHPDYRRQGLAGKLYDCYQIRTANYPI
                     ASVTFQTERVFLDKHPDLATAWNLVEDTDTETWLGREREPYQFSQQAELTVSLAQAHH
                     ADDIACFQTKVFDSDYEVALRYAREAIADADSLLYLLEHGGAVIGSCTVDISTDDNYL
                     YGLAIAPDQQRKGYGTYLVKAVINDLITKNDKPFQIAVEDDNLIAKRLYETIGFTKQT
                     QVVYLDPKEG"
     gene            5377..5562
                     /locus_tag="U1404_001330"
     CDS             5377..5562
                     /locus_tag="U1404_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348281.1"
                     /translation="MLKKLVRQNWPYVLTAIAGTIMFILKFSQGSWQVGMIWLAATAY
                     WLVKLYQKHQVLKNTQK"
     gene            5573..6916
                     /locus_tag="U1404_001331"
     CDS             5573..6916
                     /locus_tag="U1404_001331"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000591125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEM5348282.1"
                     /translation="MIKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSV
                     VAFDTIRRYFEYRGFDVTYISNFTDVDDKIIKAANEAGMTTKELSDKFIAAFKEDVAK
                     LGVKPATKNPRVIDYMDEIIDFVQVLIDKGYAYEAAGDVYFRVEKAENYARLANKTLS
                     DLEAGASGRVEGEGQLKEHPFDFALWKTAKSGEVSWGSPWGAGRPGWHIECSVMATEI
                     LGATIDIHGGGADLEFPHHTNEIAQSECKTGQTFANYWMHNAMLNINDEKMSKSLGNF
                     LTAHDMLEQIDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVD
                     KSGLELHLAAFEAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGNMLAVFGIV
                     FEEEVLDSEIEALIAERQAARANRDFATADRIRDELAAQGIKLLDTKDGVRWTRD"
     gene            6909..7307
                     /locus_tag="U1404_001332"
     CDS             6909..7307
                     /locus_tag="U1404_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HEM5348283.1"
                     /translation="MTKAVDVNLINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHG
                     EANKYVSAKAQAGLISALLEAQLLTEKEEEIYKRGRNTNSHTKAKNADVVTYRMSTGF
                     EAVLGYLHMTEQTERLDELVGWCIDNIERG"
     gene            7309..8163
                     /locus_tag="U1404_001333"
     CDS             7309..8163
                     /locus_tag="U1404_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5348284.1"
                     /translation="MNEKELAGWFPQAKLSQEADAQSLALGDGRYLNLADADLTERER
                     YLLSLLSHPQEQKPSSPWQSYLHGQSSLPQAVEAIQFIHVHLWSQKDAQLDAWQTMMT
                     DLLPSQLAQVQLSSQDYLFIIEQSRWTDYQTILADTLSALEFDFGLRLTFLVGQVWSR
                     QLADRWSQLYQAEAALFAHWRAHYHQSTVLSFSQLFLWGQGRAGLEFGMIKASMLQLI
                     DQQDMQDIILALWTEGAVVTKTAQILYIHRNTLQYRLDKWQDLTGLQLKDLTDLSFCY
                     QVLLDRLF"
     gene            8273..9403
                     /gene="ugpC"
                     /locus_tag="U1404_001334"
     CDS             8273..9403
                     /gene="ugpC"
                     /locus_tag="U1404_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEM5348285.1"
                     /translation="MVQLNLKNIYKKYPNSEHYSVENFNLDIKDKEFIVFVGPSGCGK
                     STTLRMIAGLEDITEGEAYIDGVLMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGL
                     KLRKYSKDEIKKRVEEAAQILGLTEFLQRKPADLSGGQRQRVAMGRAIVRDAKVFLMD
                     EPLSNLDAKLRVSMRTEIAKIHRRIGATTIYVTHDQTEAMTLADRIVIMSATKNEAGT
                     GTIGRIEQIGSPEELYNKPVNKFVASFIGSPAMNFFTVTLQEGVLVGDGFKVDLPEGR
                     RKHLEEKGYNGKSFTLGIRPEDIKASQLELDTYPSSIVEAEVVVSELLGAETMLYSKV
                     GNTEFVSRVDARDYHNPGDKVRLTFNLNKAHFFDDETDQAIV"
BASE COUNT         2718 a         1969 c         2250 g         2508 t
ORIGIN      
        1 tacactttga gtgttcggaa gggaaaatag tagggataac tggtataaat ggttcgggga
       61 agagtgttct gttcaaattg atagcgggcc ttatgcaacc gaattctggg actatcaagg
      121 tgtatggaga agatattgtc ggaaagattc catctggttt aggagcatta attgaagaac
      181 caggctttat tcccaattat agtggatttg aaaatttaga atttttatca actatccaaa
      241 atatcattgg taaggaagaa atacttgcaa ccttacatcg tgtaggactc tttgaagata
      301 aggataaaaa ggttaggaat tactctctcg gtatgaagaa aaaattagga attgcacagg
      361 ctattatgga agagcctaga atccttctat tggatgagcc gacaaatgct ttggatagtc
      421 agagcgttca gagggtgtat gacttgctaa aagaactttc aaaagaaaag ggtgttacgg
      481 ttttattggc cagtcataat gatagtgata ttagacatct atgtgataaa gtttatcttc
      541 tcgaaaataa gcaatgtaag ttattgaaat agaaataatt tatgaattgt gcattcagtt
      601 ttgtacaaaa ttcgtgacta ttttgacggt acggctaatt tgtaaaggtg aatttgaaaa
      661 agaatagaga aagtctactc ggtttattgg aagataatat cagttgacaa aagagttatt
      721 ccttgataga ataaatgagg tccaaaaagg acaaatctag ctttttcttg gttacaggtc
      781 gccaacctgt cactcggatt aggctcaaaa caaaggagaa catatcatgg caatctcaaa
      841 agagaaaaaa aatgaaatca tggcacaata tgctcgtcat gaaggcgaca caggttcagt
      901 tgaagtacaa gtagcagtac ttacttggga aatcaaccac cttaacgacc acatcaaaca
      961 acacaaaaaa gaccacgcaa cttaccgtgg tttgatgaaa aaaatcggtc gccgtcgtaa
     1021 cttgttggca tacctacgcc gcacagacgt aaaccgttac cgtgaattga ttcactcact
     1081 cggactccgt cgttaatcaa gatacgagaa cgcaaaaaat ccgtatgaaa ataggagatt
     1141 gtcacagcga ctcgtcgcaa ggcaatctat ctttttcact aggattttcg ttcgagttca
     1201 attcagcaag agcctgttta tcaggctttt ttttgtttct ctttttccga gtttttaggc
     1261 tgtgcaaggt attgatttct gctttaattt ctcgtttttg agttactcat tcgtttttca
     1321 acttatttta gcagaaatta cttcctcaat tccccacatt ttccgtcaaa tatgataaaa
     1381 taagaagtat gcgtggtttt gtgcaaaaga gagtgaaaca agcttgtttg attgtctttt
     1441 gtagaaaata cgcaggaaaa atttcagaaa aaataggaga caattcatgt caaaacaagt
     1501 atttgaaacg gtttttgctg gcaagaaatt ggtcgttgaa acaggccagg ttgccaaaca
     1561 agccaatggt gcggttgttg ttcgctatgg cgactcaaca gtccttacag cggcagttat
     1621 gtccaagaaa atggcaacgg gtgatttctt cccgctccaa gtcaactatg aagagaaaat
     1681 gtacgctgca gggaaattcc caggtggctg gatgaagcgt gaaggccgtc cgtcaaccga
     1741 tgcgaccttg acagctcgtt tgattgaccg tccgatccgt ccaatgtttg cggaaggctt
     1801 ccgtaacgaa gtccaagtca tcaacacagt cctttcttac gatccagatg cctcagctcc
     1861 aatggcagcc atgtttggtt cttcattggc attggcaatc tcagacatcc cattcaacgg
     1921 cccaatcgca ggtgtccagg ttggttatgt caatggtgaa ctcatcatca accctgacaa
     1981 ggctcaaatg gaagagtctc tccttgactt gacagtagct ggtaacaagg atgctatcaa
     2041 catggtagag tctggtgcca aagaattgtc agaagacatc atgttggagg cactcctcaa
     2101 aggtcatgag gctattcaag aactccttga cttccaaaat caaatcgtag cagcagtcgg
     2161 caaggaaaaa gcagatgtgg aacttcttca agtggaccca gaattgcagg ctgagattgt
     2221 cgcagcttac aatgacgatt tgaaaaaagc ggtgcaggta gaagaaaaat tggcccgtga
     2281 agatgcgacc aatgccgtgc gtgagaccgt catcgcagcc tacgaagaaa aatatgctga
     2341 acacgaagaa tttgaccgta tcatgcgtga tgtccatgaa atcttggaac tcatggagca
     2401 tgcagaggtt cgtcgtttga ttacagaaga caaggttcgt ccagacggtc gtcgtgtgga
     2461 tgaaattcgt ccgctggacg cagaagtgga cttcttgcca aacgttcatg gctcaggtct
     2521 ctttacccgt ggtcaaactc aggcactttc agtcttgacc ttggccccaa tgggtgaaac
     2581 tcaaatcatc gacggattgg gcgacgagta caagaaacgc ttcttgcacc attacaattt
     2641 cccacaatat tcagttggtt caactggtcg ctatggtgca ccaggtcgtc gtgaaattgg
     2701 tcacggtgct cttggtgagc gtgcccttga gcaagttttg cctagcttgg aagacttccc
     2761 ttacgctatc cgcttggtgg cagaagtttt ggaatcaaac ggttcttcat cacaggcttc
     2821 tatcacagct gggacccttg ccctcatggc aggtggtgtg ccaatcaagg caccagttgc
     2881 agggatcgct atgggtctga tttcagacgg caccaactac actgttctga ctgatattca
     2941 aggtcttgag gaccactttg gcgacatgga cttcaaggta gctggtaccc gtgatggtat
     3001 cacagctctt cagatggaca tcaagattga cggtatcaca ccgcaaatct tggaagaagc
     3061 cttggcacag gctaagaagg cacgctttga aatccttgat gtcatcgaag cgacgatccc
     3121 agaagttcgt cctgacttgg caccaaccgc accgaagatt gacacgatca agattgatgt
     3181 ggataaaatc aagattgtca tcggtaaggg tggcgaaact attgataaga ttattgcaga
     3241 aactggtgtg aaaatcgata tcgacgaaga cggttttgtg gctatcttct caccagatcg
     3301 cgatgcaatt gaacggacca aggaaatcat tgcaggtctt gttcgtgaag caaaagtgga
     3361 cgaagtcttc caagcaaaag tcgttcgttt ggagaaattc ggtgcctttg tcaacctctt
     3421 tgacaagact gatgccctgg tccacgtttc tgaaatggct tggactcgtg tcaataaacc
     3481 agaagatttg gttgaaatcg gcgatattgt cgatgtcaaa gttatcaaga ttgacgataa
     3541 aggtcgtgtt gatgcttcta tgaaggctct tcttccaaaa ccagaaggtt atgtggagcc
     3601 agaaaaacgc gagcgttctg acaaacctcg ccgtccaaga gaccacaaag agaaaaaaga
     3661 caacaacttt ggcgaattca aattccacaa ggttgaaaag aaataagctg agtagacaag
     3721 ttcggtagcg ggcttgtctt tcgctagaag gagtgactat gggttggtgg aaggacacca
     3781 ttgagattgt aaaagaaaaa gatccggcag cacggacgac cttggaagtt cttttgacct
     3841 acccaggtgt taaagccttg gctgcccacc gtctgtccca ctggatgtgg aaaaaaggtt
     3901 ttaaattact agctaggatg cacagccaat tttggcgttt ttggactaat attgaaattc
     3961 atccaggcgc cgagattgct tcgggggttt tcattgacca cggagctggt ttggttattg
     4021 gtgagacggc tattattgag tctggtgtca tgctttacca cggcgtaacg cttggtggta
     4081 cgggtaagga ttgtggcaaa cgccatccga ctgtgcgaaa aggggctctg gtttctgctc
     4141 acgcccaagt cattggccct attgagattg gagaaaatgc taaagtgggt gcagctgccg
     4201 ttgtcctagc cgatgttcca gcagatgtga cagtggtcgg tatgccggct aaaatcgtcc
     4261 gtgtccatgg tcaaaaagat gagaaggtca ttcatgacat ggaaggtggt cgtgaacact
     4321 acaccaccaa actggcagag ctgagagaag ccagccatca ttcatcgcat ttgtaggaaa
     4381 gccacatatg gtaagtccga tgtgatttag ccatagagag gaaaaataag catgatacta
     4441 gccactaatg tcctaaatcc ccagcagtta tccgcagcaa aaactctgat aagtactgta
     4501 caatcccatg acggaaccta tcgtgaccct tacctgtcaa atatgctcaa ctttgaccct
     4561 gaaatgccag cttttttctt ggcctatcaa gaccaacagt tggtggggct cttgactgtg
     4621 tatgctgatg atgaggatgt agaacttgca attctcgtgc acccagacta ccgcagacag
     4681 ggtctggcag gcaagctcta tgattgctac cagattagga cggctaacta tcctatcgct
     4741 agtgtgacct ttcagaccga acgtgtcttt ctggacaagc acccagacct tgcgacagca
     4801 tggaacttgg tagaagatac ggatactgag acatggctgg gacgtgagcg agagccttat
     4861 cagttctcac aacaggctga actcacagta agtttggcac aggctcacca tgcagacgac
     4921 attgcgtgtt tccagacaaa ggtctttgat agcgactatg aggtggctct tcgttacgca
     4981 cgtgaggcta tcgctgatgc ggacagcttg ctttaccttt tggaacatgg cggagcggtt
     5041 atcggttctt gcacagtaga tatctcgacc gatgataact acctttacgg tttagctatt
     5101 gccccagacc agcaacgaaa aggatatggt acttacttag tcaaagctgt catcaatgac
     5161 cttatcacga aaaacgacaa accttttcaa atcgctgtcg aagatgataa cctcatcgct
     5221 aagcggctgt atgaaactat cggttttaca aagcagacac aagtagttta cctagaccca
     5281 aaagaaggtt gacatgctat tagaagaatt tgaaaatacc tctgcagtca ttgaaccgac
     5341 ggacaaagcg attgcaagaa aattagaaag tagatcatgt taaaaaaatt agtaagacaa
     5401 aactggcctt atgtgttgac cgccattgct gggacaatca tgtttatcct taaattttcc
     5461 caaggaagct ggcaggtagg gatgatttgg ttggctgcga cagcttattg gctagtaaaa
     5521 ttgtatcaaa agcatcaagt cctaaagaat actcagaagt aatggagaaa ctatgattaa
     5581 aatttacgat accatgactc gcagtctgcg tgactttgtg cccttggaag agggtaaggt
     5641 caagatgtat gtttgcggtc cgacggttta caactatatc catatcggaa atgcccgtag
     5701 cgttgtggct tttgatacta tccgccgcta ttttgaatat cgtggctttg atgtgaccta
     5761 catctcaaac tttacggatg tggatgacaa gattatcaag gctgctaatg aagctggcat
     5821 gacaaccaag gaattgtctg ataagtttat cgcagccttc aaggaagatg tggcaaaact
     5881 gggtgtcaag ccggctacca aaaaccctcg tgttatcgac tatatggatg aaatcattga
     5941 ttttgtgcag gtcttgattg acaagggtta cgcctacgag gcggctgggg atgtttattt
     6001 ccgtgtggaa aaggctgaaa actatgctcg tttggccaac aaaaccctgt ctgacttaga
     6061 ggctggtgct tctggtcggg ttgagggaga aggtcaactc aaggaacatc cttttgattt
     6121 tgccctgtgg aaaactgcca agtcaggcga agtttcttgg ggaagtcctt ggggagcggg
     6181 tcgtccaggt tggcatatcg agtgttcggt catggcgaca gagattttgg gagctaccat
     6241 tgatattcac ggtggtggtg cggacttgga attccctcac cataccaatg aaatcgccca
     6301 gtctgagtgc aaaacaggtc aaacctttgc caactactgg atgcacaatg ccatgctcaa
     6361 tatcaatgat gagaagatgt ccaagtcctt gggcaacttc ctgactgccc atgatatgtt
     6421 ggaacaaatt gacggtcagg tcttgcgctt cttcctatct acccagcact accgccgtcc
     6481 actcaactac actgagaagg ctatttcaga tgcggaaatc aatctcaaat atctgaaaaa
     6541 tacttataca caacctgtgc aaaactctgt ggataagtca ggtcttgaat tgcatttggc
     6601 agcctttgaa gcagccatgg atgatgattt caatgcggca aatgggatta cggctatctt
     6661 tgactttgcc aagtggatca actcaggcaa ctacgatgaa actgtaaaag aagcctttgg
     6721 aaacatgctc gccgtctttg gtattgtctt tgaagaagaa gtcttggaca gcgagatcga
     6781 agccttgata gcagaacgtc aagcagcgcg tgccaatcgg gactttgcga cggctgaccg
     6841 tattcgtgat gaattggcag cccagggcat caagctcttg gataccaagg atggtgtgag
     6901 gtggacacgt gactaaggca gtagatgtca atctcatcaa tggaattgct ctggctttcg
     6961 aaggggatgc tgtctattcc atgtatgtca gacggcactt gattttcaag gggctgacca
     7021 agcctaacaa attgcacgga gaggctaaca aatacgtctc ggctaaggct caggcaggcc
     7081 tgatttctgc cctcttagaa gctcagctat tgaccgaaaa agaggaagag atctacaagc
     7141 gggggcgcaa taccaatagc cacaccaagg ccaagaatgc ggacgtggtc acctatcgga
     7201 tgtccacagg ctttgaggcg gtcttgggat acctgcacat gacagagcag acggagcgcc
     7261 tggatgaact ggtaggttgg tgtattgaca atatagaaag aggataagat gaacgagaag
     7321 gaacttgcag gttggtttcc gcaggctaag ttatcgcagg aagcggacgc acagtcgctt
     7381 gctttaggcg acggtcgcta tctgaatctg gcggatgcgg atttgacaga gcgagaacgc
     7441 tatctcttgt ccttgttgtc ccatcctcaa gagcagaaac cgtcaagccc ttggcagtcc
     7501 tatctacatg gacagagctc tctgccccag gcggttgaag ctattcaatt tatccatgtc
     7561 cacctttggt cgcagaagga cgcccagttg gatgcatggc agaccatgat gaccgacctc
     7621 ctacccagtc aattggctca ggtacaactg tcgagtcagg attacctttt tatcatcgaa
     7681 caaagtcgtt ggacggacta tcaaaccatt ctggcagaca ccctatcagc cttggagttt
     7741 gactttggct tgcggttgac attcctagtc ggtcaggttt ggtctcgtca acttgcagat
     7801 cgttggtctc aactctatca agcagaagca gccctctttg ctcactggcg agcgcactac
     7861 catcaatcaa ccgtcctatc ctttagtcaa ctctttcttt ggggacaagg cagagcaggt
     7921 ttggagtttg gtatgataaa agctagtatg ctacagttga ttgaccagca agatatgcag
     7981 gacatcattc tagccctgtg gacagaagga gccgtggtca ccaagaccgc tcagatcctc
     8041 tatatccatc gtaataccct ccaataccga ttggacaagt ggcaggattt gaccgggctc
     8101 cagctcaaag acctgactga tttaagtttt tgttatcaag tattactaga taggcttttt
     8161 taatcttttg tgcaacttgt acaaaagatt gtgttctttt tgttcacctt gacctagaaa
     8221 aataaaacgc tttcatttat aataaaacta tcaaagaaag tgaggcttga acatggttca
     8281 acttaattta aaaaatattt ataaaaaata tccaaatagc gagcattatt ccgttgaaaa
     8341 ctttaatcta gatattaaag ataaagagtt tattgttttc gtgggcccat caggatgcgg
     8401 taaatcaact actcttcgta tgattgctgg attggaagat attacagaag gtgaagctta
     8461 catcgacggt gtgttgatga acgatgtagc accaaaagac cgtgacattg ccatggtatt
     8521 ccagaactat gccctttacc cacacatgac tgtatttgac aacatggctt ttggtctgaa
     8581 attgcgtaaa tacagcaagg atgaaatcaa aaaacgtgta gaagaagcag cacaaattct
     8641 aggcttgact gaattcttgc aacgtaaacc tgctgacctt tctggtggtc aacgccaacg
     8701 tgttgccatg ggccgtgcca ttgtccgcga tgcaaaagta ttcttgatgg atgagccttt
     8761 gtcaaacttg gatgccaaac tgcgtgtatc catgcgtaca gagattgcta aaatccaccg
     8821 tcgtattggt gcaacaacga tctacgtaac gcacgaccaa acagaagcca tgaccttggc
     8881 tgaccgtatt gttatcatgt ctgcgactaa gaatgaagca ggtacaggta caatcggtcg
     8941 tatcgaacaa attggtagcc cagaagagct ttacaataaa cctgtaaaca aatttgttgc
     9001 cagcttcatc ggtagccctg caatgaactt ctttacagtg actcttcaag agggcgtgct
     9061 tgttggagat ggtttcaaag tagatcttcc agaaggtcgt cgcaagcatt tggaagaaaa
     9121 aggctacaac ggcaaatcat ttacattggg tatccgtccg gaagacatca aagcttcaca
     9181 attggagttg gacacttatc catcttctat cgtggaagca gaagttgtcg tttcagagct
     9241 tcttggtgcg gaaaccatgc tctattctaa agtagggaat acagaatttg tatctcgtgt
     9301 agatgcgcgt gattaccaca atccaggaga caaggttcgc ttgaccttca acctcaacaa
     9361 agctcatttc tttgatgatg aaacagatca agccattgtt taatctttta taatttgttc
     9421 ataaaacacc aaagacccgc tatta
//
LOCUS       DASGCC010000078         9408 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.078, whole genome shotgun sequence.
ACCESSION   DASGCC010000078 DASGCC010000000
VERSION     DASGCC010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9408
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.078"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(3..944)
                     /locus_tag="U1404_001335"
     CDS             complement(3..944)
                     /locus_tag="U1404_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5348286.1"
                     /translation="MIAKFIREYRSFYFSYIVLATSFILLFFLYQLPTEFLQNALLLS
                     LTLLILLTVGLFWKFRNRMRALEDYVHEEALPLLNKPVDLAYLNLIEAEKEATREQLL
                     VYKSREEDLQAMVKMWSHQMKVPLAALSLMSQTDNLNQQDVNHQLLRLDNYMANLLNY
                     LKLTNHASDFRFEQVEVREVVVDLVKKYRNQFLQKDISVTIDGNWLLKSDRKWLSFAL
                     SQIIDNALKYNKTGGKVAIELNEGISISDTGIGILAEDIPRLFDEGFTGFNGREHQKA
                     TGFGLYLTKRVLNQLELAISVESQLEVGTSVTITKVQ"
     gene            complement(941..1606)
                     /locus_tag="U1404_001336"
     CDS             complement(941..1606)
                     /locus_tag="U1404_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012961975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5348287.1"
                     /translation="MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAE
                     IKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFISSSDDEMNAVMAMNMGGDDFVSK
                     PFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
                     ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGY
                     LVK"
     gene            complement(1645..1902)
                     /locus_tag="U1404_001337"
     CDS             complement(1645..1902)
                     /locus_tag="U1404_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5348288.1"
                     /translation="MSYKVILSAKAQKQIRKMDKTAASLILRYLYKHIDGCDNPRQYG
                     KALTANRSGQWRYRIGNYRVIVNIEDDKLIVTSIKMRNGSI"
     gene            complement(1892..2131)
                     /locus_tag="U1404_001338"
     CDS             complement(1892..2131)
                     /locus_tag="U1404_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5348289.1"
                     /translation="MAAITLKVSEQDKLFMQAMAKFEGVSLSELIRTKTLEALEDEYD
                     ARVADVAWAEYQADLANRIEPMTLEQMAEELGIEL"
     gene            complement(2223..4193)
                     /locus_tag="U1404_001339"
     CDS             complement(2223..4193)
                     /locus_tag="U1404_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5348290.1"
                     /translation="MFYLKLAGQNIRKSIGVFAPFVLASLVLFTLICSMFLLMLSPVM
                     KTMGTGAVSIGLGVVVLTIFSVIMEIYSFNFLMKQRAREFGLYNMLGMNKKKVALIAS
                     IELMMIFLLVVVLGSVLAGVFANVLYLIFVNITHYSDLHFGIEPLAFVMTAFLFAGFF
                     FLLELLAIRTIGKTSPLILFRASEKGEREPKGNVLLAALGVLSLGMGYYLSLSSKAEG
                     LAVIYRFFIAVLFVIAGTYLFYISFMTWYLKARRKNKRYFYTPEHFITTSQMIFRMKQ
                     HATGLANITLLAVMAFVTIATTTSLYTGMANMTSGLYPKETSITYKVSYRSQGVAAYQ
                     QSVLSHFPEKANDNLSYLTYQAGLVYDGGSDIVINPETIANPDFSKMAFTYFITQDDF
                     RKLGNDLPELAANQVAFMRPSEMPSLKKLVLGDQTFENVANLDQAIFPDITNTLNAAV
                     MVVSDDTVLDAVREYYESNNPQGYTVSLDYRVFTDLTDEEVASIGQQTGDSYNINDAN
                     GEFLGYAMQKSDFNNLLMGFTGSFLFTGFLLGISFLLGAALIIYYKQYSEGHEDKKSY
                     KILQEVGMSQQAVKKTINSQTLLVFFMPLAMATLHFIVALVMLKQMLMVFGVVSSSMI
                     YTVSGITLLAVVLIYFVIYKWTSRTYYRIIER"
     gene            complement(4194..4946)
                     /locus_tag="U1404_001340"
     CDS             complement(4194..4946)
                     /locus_tag="U1404_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017650232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348291.1"
                     /translation="MLLEINHLEKVYRTRFSKEETRALQDVDFKVEEGEFIAIMGESG
                     SGKTTLLNILATLDKPTRGSVILNNQDITKIKESKLADFRLRNLGFVFQDFNLLDTLS
                     IQDNIFLPLVLARESYEEMEKRLKVLAPKLRIQDLLKKRPFELSGGQKQRVAIARSLI
                     TQPQIVLADEPTAALDYRNSEDLLNLFEDINLDGQTILMVTHSANAASHAKRVLFIKD
                     GRIFHQLYKAGKSNQDFAKEISLNMSALLGGE"
     gene            complement(4963..5346)
                     /locus_tag="U1404_001341"
     CDS             complement(4963..5346)
                     /locus_tag="U1404_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NisI/SpaI family lantibiotic immunity
                     lipoprotein"
                     /protein_id="HEM5348292.1"
                     /translation="MKKKVFGLLALGSIILTACSFSSAGLSFDEGYQTFHYKGKDYAV
                     SKQEVAENNIQEVEVKFMEWPVVKEEGAVKKTVSLNNLYITTSKEWAIGVQDGYYKVD
                     LEDNIAESDRIDYQAVLDQVDLDSE"
     gene            complement(5359..5499)
                     /locus_tag="U1404_001342"
     CDS             complement(5359..5499)
                     /locus_tag="U1404_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348293.1"
                     /translation="MSFKFLQVKRMEEKAFTEKEKTELLEQAEFLEELALDLQTMRFM
                     AY"
     gene            complement(5598..6332)
                     /locus_tag="U1404_001343"
     CDS             complement(5598..6332)
                     /locus_tag="U1404_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-carotene 15,15'-monooxygenase"
                     /protein_id="HEM5348294.1"
                     /translation="MKSYNAYQLKLAMAGLMVLDHLKIIPDFIPDQLALVFHLATRCV
                     AVFFAYMLVEGFLHTRNVKAYLLRLYGAAGLMATGNTLLNSLYQSKGIYISNNIFLTL
                     AVGLTLLICLQNFSEHTRAKQIIQVLLAGLLTIIGALFTEGGTVVLPFILITYLGRES
                     ATKRTIAYGFLALVLLAMSYQPYERLEMTIQMMLYNADWLFILVLPILSLYNGQAGPR
                     TVFSRYFFYIFYPLHLWILATIGYFL"
     gene            complement(6345..6482)
                     /locus_tag="U1404_001344"
     CDS             complement(6345..6482)
                     /locus_tag="U1404_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348295.1"
                     /translation="MSFKFLQAKQIFGKSQESKRLEEQDKQAEFLFELEHELFQRNWM
                     Y"
     gene            complement(6621..7787)
                     /locus_tag="U1404_001345"
     CDS             complement(6621..7787)
                     /locus_tag="U1404_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HEM5348296.1"
                     /translation="MNYLVISPFYPENFQPFTIELAKKEGVTVLGIGQEPYDQLPEEL
                     RNALTEYFRVEDLENIDEVKRAAAFLIYKHGPIDRVESHNEYWLENDAALREQFNIFG
                     AKPKHLKKTKFKSEMKKYFKKAGVPVVPGVVVKSERDFGRALKNVGFPMIAKPDNGVG
                     ASGTFKIENKEDFDRFVETWDGATIYFLEKFVNSSIITTYDGLLDHEGNVVFETGLTY
                     VHTPLELMLSRKDNAYFIEKELDPQLVKYGRAIIKAFGMRERFFHIEFFKDGDDYIAI
                     EYNNRMAGGFTVEAYNYAHSIDLFRDYANVATGGTVEERRFEPQYCLVATRRDTTEYV
                     HSADDIHQKFAGKIKTVKRMPDAFAELQGNDAYLLVTESKKELDEMIAYIGLTK"
     gene            complement(7806..8552)
                     /locus_tag="U1404_001346"
     CDS             complement(7806..8552)
                     /locus_tag="U1404_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM5348297.1"
                     /translation="MHVEFLSHWSGNLGREMNLNRYGHAGIPVVVFASSGGSYNEYAD
                     FGMIEACRGSIEAGQVQFFTLTGYDSESWLADWKSIHDKAEAHRAYERYVIEEAIPFI
                     KHKTGWFDGMMTTGCSMGAYHALNFFLQHPDVFTKVIALSGVYDARFFNNNHDYGHDD
                     AVYQNSPSDYIWNQNDGWFIDKYRQADIIVCTGLGDWEQDGLDSFYNLKRAFEEKNIP
                     AWFDTWGTDVAHDWVWWRKQMPFFLHSIGL"
     gene            complement(8583..>9408)
                     /locus_tag="U1404_001347"
     CDS             complement(8583..>9408)
                     /locus_tag="U1404_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5348298.1"
                     /translation="NKSYFYLDMRTHELDVPFTGRKRRVRVLLPKGYAENTEETYPVV
                     YFHDGQNVLYSKEAFSGHSWKVIPTIKRNPDIAKMIVVAIDNDGADRMHEYAAWKFSE
                     MGIPGVQFGGKGTLYAEFVMDVVKPFIDKEYRTKSDKVHTAMIGSSLGGNITQFMGLA
                     YQNQIGCLGVFSSANWLHQDAFDRYIERQQLDSEQRVYIYVGTEEADDTDKTLMAGNI
                     KQAYINSSLTYYRQLIAGGVDLDTIALEVVSGAVHNEEAWALYLPACLRFLSEHWS"
BASE COUNT         2719 a         2134 c         1846 g         2709 t
ORIGIN      
        1 ttctactgta cttttgtgat ggttacgctg gtcccaactt ccagttgact ttccacggaa
       61 atagctagtt ccaactgatt caggacccgc ttggtcagat acaatccaaa tcctgtcgct
      121 ttttggtgtt ctcggccatt aaaacctgta aatccctcgt caaacaggcg tggaatatct
      181 tctgccagaa tcccaattcc cgtatcggaa atggaaattc cctcattcag ttcaatggct
      241 acctttccac cagtcttatt gtacttgagg gcgttgtcga ttatctgtga caaggcaaag
      301 ctgagccatt ttctgtcgga cttcagtagc caatttccat cgatggtcac tgaaatgtct
      361 ttttgtaaga actgattgcg gtattttttg accaaatcca ccaccacttc tcttacttcc
      421 acctgctcaa atcgaaaatc gctggcatgg ttggtcagct tgaggtagtt gaggagattt
      481 gccatataat tgtccaagcg taagagctgg tgattgacat cctgctggtt gagattgtca
      541 gtctggctca tcaaagacag ggcagccaga ggcactttca tctggtggga ccacattttg
      601 accatggctt gcaggtcctc ttctcgtgac ttatagacca aaagctgctc tcgtgtcgcc
      661 tccttctccg cttcaatcaa gttgagatag gcaaggtcca caggcttatt gagcaagggc
      721 aaggcttcct catgaacata gtcttccaag gctctcatgc ggttgcgaaa cttccagaaa
      781 agccctacag tcagtaggat taaaagggtt agggacaata gcagagcgtt ttgcaggaat
      841 tcggtgggca gttgatagag aaagaaaagc aagataaaac tagtagccag aacaatgtag
      901 gagaagtaaa aactccggta ttcacggata aattttgcta tcatttgacc aagtacccca
      961 cgccacgaac cgtatgaatt cgttcaaacc cgacttcgct caccttctta cgcagtctgg
     1021 tcatgttgac attgagcgtg ttctggtcaa taaattcttc attttcccag agtttttcca
     1081 ggagttcttc cttgctgaca atctgccctt gtctttctag taaggcggac aaaatcttgg
     1141 tttccgtagg agacaattga acctgttcca attcgtttga aaatcgcccg tctaaactaa
     1201 gttggaactg gtcaattgac aaatcagttg atttgctgaa ttgattaacc cgacgcaaga
     1261 aggcgccgat tttggcatcc aaaatcccca gagaaaacgg cttagacaca aaatcatcgc
     1321 cacccatgtt catggccatg accgcattca tctcatcatc gctagaggag ataaagataa
     1381 tgggcatggt catggtttta cggatttctg tcgtccagta aaaaccgttg taataaggca
     1441 ggctaatgtc catcagcacc aagtctggtt tgatttcagc gacttcctga ctgacagctc
     1501 ggaaattctg cacactttcc acctgatacg attttcccaa atgctgcttc aagagctgga
     1561 caatcatctc atcatcttca acaatataaa tcttctcttt tttcatcttc ttcattctgc
     1621 aaaagccagg acacaggtct tggcttatat acttccattt ctcattttta tgcttgtcac
     1681 aatcaattta tcatcttcaa tattaacgat aaccctgtaa ttgccgatac gatagcgcca
     1741 ttggccagaa cgattagcag tcaaggcttt tccgtattgt ctagggttgt cgcaaccgtc
     1801 aatatgcttg tagagatagc gcaaaatcaa acttgcagcg gttttatcca tctttcgaat
     1861 ttgcttttgg gccttagcag acaaaataac cttataactc aatgcccaac tcctcagcca
     1921 tttgttctaa tgtcatcggc tcaattctat tcgccaagtc tgcttggtat tctgcccaag
     1981 caacgtctgc cacacgcgca tcgtactcgt cttcaagggc ttcaagggtt ttagtccgaa
     2041 tgagttctga caaactgaca ccttcaaact ttgccatagc ctgcataaag agcttgtcct
     2101 gctcagaaac tttcaatgta atagctgcca ttttcttacc tctttgagta ttcctttggt
     2161 attaccattg taacaccatt tccctgaaaa agcaagaaat ctcgcacaag gcgagacttc
     2221 tgctatcgtt caataatacg ataataggtt cggctggtcc acttgtaaat gacaaagtag
     2281 atgaggacaa cagcaagcaa agtaatacca ctaaccgtat aaatcatgct ggaagaaact
     2341 acaccgaaca ccatcaacat ttgcttgagc atgactagtg cgacgataaa gtgcagggtc
     2401 gccatagcca gtggcataaa gaagaccaag agtgtttgag agttgatggt tttcttaaca
     2461 gcctgctggc tcatacccac ttcctgcaaa atcttgtagg atttcttgtc ctcatgtcct
     2521 tccgagtact gtttgtagta gataatcaag gctgcaccaa gtaggaaact aatgcccagc
     2581 aagaaacctg taaagaggaa actgcctgta aagcccatca gtaaattgtt aaaatctgat
     2641 ttttgcatag catatcctag gaattctccg tttgcatcgt tgatattata agagtcgcca
     2701 gtttgttgac caatcgaagc aacctcttca tcagtcaagt cggtaaagac acggtagtcc
     2761 agactgactg tatacccttg cggattattg gactcgtaat actcacgaac agcatccaac
     2821 acagtgtcat cactgactac cataacggcg gcatttagcg tattggtgat gtctgggaaa
     2881 atagcctggt caagattggc tacattctca aaggtttgat cgcccaaaac aagcttctta
     2941 agcgacggca tttcactcgg acgcataaag gcaacttgat tggcagccag ctctggcagg
     3001 tcattcccca atttcctgaa atcatcttgg gtgatgaagt aggtaaaggc cattttgcta
     3061 aagtctggat tggcaatggt ttctggattg atgacaatat cgctcccacc atcatagacc
     3121 aaacctgctt ggtaggtcag ataggataga ttgtcattgg ctttttctgg aaaatggctg
     3181 agcaccgatt gctgataggc agctacacct tgacttctat acgaaacttt ataggtaata
     3241 gatgtttcct tgggatagag tccacttgtc atatttgcca tacctgtata gagggatgtc
     3301 gttgtcgcaa tggtcacaaa ggccatgacc gcaagtagcg taatattagc caaacccgtt
     3361 gcgtgctgct tcatccggaa aatcatctgc gaagtcgtaa tgaaatgctc cggcgtatag
     3421 aaataccgct tgtttttccg acgagccttc aaataccaag tcataaaact gatgtagaac
     3481 agataggtcc ccgcaatgac aaatagcaca gcgataaaga accgatagat aacagctaga
     3541 ccttctgctt tcgatgaaag cgataggtag tagcccatcc caagactaag gacaccaaga
     3601 gcagctagaa gaacatttcc tttcggctct ctctctcctt tttcactagc tcggaacaaa
     3661 atcagcggac tggtcttacc aatggttcga atggccagca attccaagag gaaaaagaaa
     3721 ccagcaaaga gaaaggcagt catgacaaag gccagaggct caattccaaa atgtaaatca
     3781 ctataatgtg ttatattgac aaaaatcaag tagagaacat ttgcaaacac accagctagg
     3841 acagaaccaa gaaccacaac cagtaagaat atcatcatca attcgatgct ggctattaag
     3901 gctacttttt tcttgttcat ccccagcatg ttatagagac caaattccct cgcccgttgt
     3961 ttcatcagga aattaaaact ataaatctcc ataatgactg agaaaatggt cagaacaacg
     4021 acacccagcc cgatagacac ggcacctgtt cccatggttt tcatgactgg actaagcatg
     4081 agcaagaaca tagaacaaat caaggtaaag aggaccagac tagctaaaac gaagggagca
     4141 aaaacaccta tggattttcg gatattttgt ccagcaagtt tgaggtaaaa catctactca
     4201 ccccctaaaa gtgcagacat attgagcgaa atctctttgg caaagtcttg attgctctta
     4261 cctgccttgt acaattggtg gaaaatccga ccatccttga tgaagaggac gcgtttggca
     4321 tggctggctg cgttggctga gtgagttacc atgagaattg tttgtccatc taggttgatg
     4381 tcttcaaaca aattcagcaa gtcttccgaa ttgcggtaat ctagggcagc cgtcggttca
     4441 tccgctagaa caatctgcgg ctgggtaatc aaactacggg caatggccac gcgctgcttc
     4501 tgtccaccag acagctcaaa aggacgtttt ttcagcaaat cttgaatccg cagttttggc
     4561 gccaaaactt tcaaccgttt ctccatttcc tcatagctct cacgcgccaa taccagaggt
     4621 aaaaagatat tgtcttggat agacagggtg tccaagaggt taaaatcttg gaagacaaag
     4681 cctagattac gcaaacggaa atctgccagc ttgctttcct tgattttggt gatgtcttga
     4741 ttatttaaga taacagagcc cctcgtcggc ttgtccaggg ttgctagaat gttgagcaaa
     4801 gtcgtcttac ctgaaccact ttcacccatg atggcgataa actcaccctc ttctacctta
     4861 aaatccacat cttgcaaagc acgagtttcc tcttttgaaa agcgcgtgcg gtaaactttt
     4921 tctaaatgat tgatttctaa taacatagtt actcctaatt ccttattcac tgtctaaatc
     4981 aacttggtca agaactgctt gatagtcgat tcggtctgat tcagcaatat tatcttctaa
     5041 atccacctta taataaccat cctggacacc gatggcccat tccttgctag tggttatata
     5101 gagattattc aaggatactg tctttttcac tgccccctct tctttgacaa caggccattc
     5161 cataaacttg acttctactt cttgaatatt attctcggca acttcctgtt tgctaacggc
     5221 atagtctttt cccttgtaat ggaaagtttg atagccctca tcaaagctca ggcctgctga
     5281 agagaaagaa caagcggtta ggattatgct gcccaaagcc agcaagccaa atactttctt
     5341 tttcatagtt tcctccctct agtatgccat aaatcgcatt gtttgcaaat caagtgccag
     5401 ctcctctaaa aattctgcct gttccaagag ttcagtcttt tctttttctg tgaatgcctt
     5461 ttcttccatt ctctttactt gtaaaaattt aaatgacata tgatttcctt ctttctgttt
     5521 cttatgagtc tattatagaa aatatgtcgc tcatgttctc ttacagttct gattaaaaaa
     5581 cttacaagag tgtaagttta gagaaaataa ccaatcgtgg ccagtatcca caaatgaagc
     5641 ggatagaaga tgtaaaagaa atagcgtgaa aatactgtgc ggggccctgc ttgtccatta
     5701 taaagactaa gaattggaag gactaaaata aatagccagt ctgcattgta gagcatcatc
     5761 tgaatggtca tctcaagcct ttcgtagggc tggtaggaca tggctaataa aactagagcc
     5821 agaaaaccat aggcaatggt tcgcttagta gcagactcac gacccaaata ggtgatgagg
     5881 atgaatggca agaccaccgt gcccccttct gtgaacaagg cacctatgat tgtcaataac
     5941 cctgccagca ggacctgaat gatttgcttc gctctcgtgt gctcactaaa attttgaaga
     6001 caaatcagca gagttaggcc gactgctaag gtcaaaaaga tattattgct aatgtaaatc
     6061 cctttagact ggtagagact gtttagcaaa gtatttccag tggccattag tcctgctgca
     6121 ccatacagtc gtaacagata ggctttgaca tttctcgtat gaagaaaccc ttccaccaac
     6181 atgtaggcaa agaaaaccgc gacgcaccgt gttgctaaat gaaacactaa agcgagttga
     6241 tcagggataa aatcaggtat gattttcaga tgatccaaaa ccatcaagcc tgccatagcg
     6301 agtttcagtt gataagcatt atatgatttc accagtcaaa cctcctagta catccagttg
     6361 cgttggaaca gttcgtgttc tagctcgaat agaaattcag cttgtttgtc ttgttcttct
     6421 agtcgtttgc tttcttgtga tttaccaaaa atttgttttg cttgtagaaa tttgaatgac
     6481 atctgatttc cttctttcta tttcttatga gtctattata gaaaatatgt cgctcatgtt
     6541 ctcttacaat tctgaactaa aaacttacag gtttgtaaga aaagaaaaaa gacaccattt
     6601 taggcatctt tcaattcatt ctattttgtt aaaccaatgt aggcaatcat ttcatccaac
     6661 tctttcttgc tttccgttac aagtagatag gcatcatttc cctgaagttc cgcaaaggca
     6721 tctggcatgc gtttgacggt tttaatctta ccagcgaatt tctgatgaat gtcatctgct
     6781 gagtgaacat attcggtcgt atcacggcga gttgcgacca agcagtattg tggttcaaat
     6841 ctacgttcct caactgtacc acctgttgcg acattggcat aatcacggaa aagatcaatg
     6901 gaatgggcgt agttataggc ttcaacagta aagccacccg ccatgcggtt gttgtattca
     6961 atggcaatgt agtcgtcccc atccttgaaa aattcaatat ggaaaaaacg ctctctcata
     7021 ccaaaggcct tgataatcgc gcgaccatat tttactaatt gaggatccaa ctccttctca
     7081 atgaagtagg cattgtcttt tctagacaac atcagttcca gcggagtatg aacataagtc
     7141 aaacctgttt caaagacaac attgccttcg tggtccaaca aaccatcata ggttgtgata
     7201 atgcttgagt tgacaaattt ttcgaggaaa taaatagttg ctccatccca tgtctccaca
     7261 aaccgatcaa aatcttcttt attttcgatt ttaaaggtac cggatgcccc aacaccgttg
     7321 tctggtttag caatcattgg gaaaccaaca ttcttcaaag ctctgccaaa atcacgttcc
     7381 gatttaacaa ccacacctgg aacgactgga acacctgctt ttttgaaata ttttttcatt
     7441 tcagacttaa atttagtctt tttcaggtgt ttgggtttgg ctccaaaaat gttgaattgt
     7501 tcacggaggg ctgcatcgtt ttcaagccaa tattcattgt gggattctac acggtcaatt
     7561 ggaccatgct tgtaaataag aaaggccgct gcacgcttga cttcatcgat attttccaaa
     7621 tcttccacac gaaagtattc tgtaagagcg ttacgaagtt cttcaggcaa ttgatcgtaa
     7681 ggttcttgcc caatacctag aaccgtaacg ccttcttttt tagccaattc aatggtgaac
     7741 ggttgaaaat tttctggata aaaaggtgaa ataacgagat aattcatagg tagtcctttc
     7801 taatcttaaa gtccgataga atgaaggaag aatggcattt gctttctcca ccacacccag
     7861 tcgtgggcca catctgttcc ccaagtatca aaccaagctg ggatattctt ctcttcaaag
     7921 gcacgtttta ggttgtagaa tgaatccaga ccgtcttgct cccaatcgcc caaacctgtg
     7981 cagacgataa tatctgcttg acggtatttg tcaataaacc aaccatcatt ctggttccag
     8041 atgtaatcag acggtgagtt ttgatagacc gcatcatcat gaccataatc atggttgttg
     8101 ttgaagaatc gagcatcata gacacctgaa agtgcaataa ctttcgtgaa gacatctgga
     8161 tgctggagga agaaattgag cgcgtggtag gcccccattg agcaaccagt tgtcatcata
     8221 ccatcgaacc agccagtttt atgtttgata aagggaatcg cttcttcaat cacataccgt
     8281 tcataggcgc ggtgagcctc tgccttatca tgaatggatt tccagtctgc caaccagctt
     8341 tcactatcgt agccagttag agtaaaaaat tggacctgac cagcttcaat agatccacga
     8401 caagcttcaa tcataccaaa atcagcatat tcattgtaag aaccacctga tgaagcaaat
     8461 acgacaacag gaatccctgc gtgaccataa cgatttagat tcatttctcg gccaagattt
     8521 ccagaccaat gacttaaaaa ttcaacgtgc atagtaaagc ctcctatttg tatatttttg
     8581 ttttatgacc aatgttcgct taggaatcgt aggcaagctg gcaaatagag cgcccaagcc
     8641 tcttcattat ggaccgcacc cgaaacgact tccaaggcga tagtgtccaa atccactccg
     8701 ccagcgatca attgacgata gtaagtcaat gaagaattga tataggcctg cttgatattt
     8761 cctgccatca atgttttatc tgtatcatct gcttcttctg tcccaacgta gatgtagact
     8821 cgttgctctg agtctaattg ttgacgttca atataacggt cgaaagcatc ttgatgaagc
     8881 caattggccg atgaaaagac acccagacag ccaatctggt tctgataagc caagcccata
     8941 aattgtgtga tattgcctcc caaggatgag ccaatcattg cagtgtgaac tttatcagat
     9001 tttgtccggt attctttatc gataaagggt ttgacgacat ccatcacaaa ttcagcatac
     9061 aaggttccct taccaccgaa ctgcacccca ggaatcccca tctcactaaa cttccaagca
     9121 gcgtattcat gcatgcgatc agcaccatcg ttatcaatag ctactacgat catttttgca
     9181 atgtctggat tacgcttaat agttgggatg actttccatg aatgacctga aaaagcttcc
     9241 ttactgtaga gtacattttg cccatcgtgg aaataaacaa cgggataggt ctcttctgta
     9301 ttttcagcat atcctttcgg caataaaaca cggactcgac gttttcttcc tgtaaatggt
     9361 acatctaatt catgagttct catgtccaaa taaaagtaag acttattc
//
LOCUS       DASGCC010000079         9349 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.079, whole genome shotgun sequence.
ACCESSION   DASGCC010000079 DASGCC010000000
VERSION     DASGCC010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9349
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.079"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(359..1435)
                     /locus_tag="U1404_001348"
     CDS             complement(359..1435)
                     /locus_tag="U1404_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348299.1"
                     /translation="MKKLLICIVLLSCLVFPFIGWKLYAYQHNTITLTSEADFYLIYP
                     GKVEAFQLNGQEPELLHTQKMNSEGYFGSGENYVIDSRYLVFANDQQKFINDNLISID
                     FNTGTVLRKPSQYSSYISGTDGQDFYTAGPYHILAQFDRNFDTIQTHVLNDDFIPNAP
                     VMVDQTSVYLTGFVKDFTQEGPEENVLIVFDKKDFSKQEVFKYDNTIATGEGPWVNGT
                     IYLPNLGKKTSEYTDIEQSSELLTFDTKTKTFSSVTLEHPSPSTLHALKDQKLLLIEH
                     QNDMFSPISFTIYNTQTGQESYHRLDELNPRPYYIDHVRQLDGNRLLLILAGKALIYD
                     WQAKKVLSQTILSENYVSGVWVND"
     gene            complement(1547..2920)
                     /gene="mnmE"
                     /locus_tag="U1404_001349"
     CDS             complement(1547..2920)
                     /gene="mnmE"
                     /locus_tag="U1404_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEM5348300.1"
                     /translation="MITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDL
                     ATVPSHSLNYGHIIDPATGQVLDEVILGVMRSPKTFTREDVIEINTHGGIAVTNEILQ
                     LLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQ
                     LINDTRQEILNTLAQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGK
                     ILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLI
                     DTAGIRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDLANRIV
                     LLNKTDLEEQIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFENAGLVEQDATYLSN
                     SRHISLIEQAVQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLF
                     SQFCLGK"
     gene            3604..6972
                     /gene="cas9"
                     /locus_tag="U1404_001350"
     CDS             3604..6972
                     /gene="cas9"
                     /locus_tag="U1404_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637067.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEM5348301.1"
                     /translation="MSNGKILGLDIGIASVGVGVIDAQTGEIIHASSRIFPSANAANN
                     AERRTFRGSRRLIRRKKHRIKRLDDLFNDFHINLDGEMSTDNPYVLRVKGLSQKLTVE
                     ELYISIKNIMKRRGIPYLDDAESDNEAGRSDYAKAIERNRQLLTSKTPGEIQLERLEK
                     YGQLRGNFTIIDEEGQSQQIINVFSTSDYVKEVEKILDCQKMYHKFISDEFCDKLIEL
                     LREKRKYYVGPGNEKSRTDYGIYRTDGTTLENLFGILIGKCTFYPDQYRSSRASYTAQ
                     EFNFLNDLNNLTVPTETKKLSQEQKEFLVNYAKETSVLGAGKILQQIAKLADCKVEDI
                     RGYRLDNKDKPELHTFETYRAMKGLVPLVDIGVLSREQLDILADILTLNTDFEGIREA
                     LKKQLPNVFDEKQVKGLASFRKSKSQLFAKGWHNLSQKIMLEVIPELYATSDEQMTIL
                     TRLGKFEKSSVAEYPSSINVDEITDEIYNPVVAKSIRQTIKIINASIKKWDEFDQIVI
                     EMPRDRNEDEEKKRIADGQKANAKEKADSILRAAELYCAGKVLPDYVYNGHNQLATKI
                     RLWYQQGERCIYTGQPISIHDLIHNQNQYEIDHILPLSLTFDDSLSNKVLVLATANQE
                     KAQRTPYNYLKSATSAWSYREFKDYVTKRKGIGKKKCEYLTFEEDINGFEVRSKFIQR
                     NLVDTRYASKVILNALQDYFKISGIQTKVSVVRGQFTSQLRHKWGIEKTRETYHHHAV
                     DALIIAASSQLRLWKKQESPLVVDYQEGRQVDLETGEILELTDEQYKELVYQPPYQGF
                     VNTISSSAFDNEILFSYQVDSKVNRKISDATIYATRNAQLGKDKTEGIYVLGKIKDIY
                     TQAGYEAFLKRYTKDKTSFLMYHKDLDTWEKVIEIILRDYREYDEKGKEIGNPFERYR
                     RENGYVKKYSRKGNGTAIKSLKYYDNKLGNHIDITPENSRNAVVLQSLKPWRTDVYFN
                     KETGKYEFLGIKYSDLSFEKGTGEYGISQEKYDSIKIAEGVAKKSIFKFTLYKQDLLF
                     IKDIENNFGKLLRFTSKNDTSKHYVELKPYDKNKFGTEEPLLPVLGNVAKSGQCIKGL
                     NKSNISIYKVRTDILGYRHFIKQEGEHPQLKFKK"
     gene            7139..8053
                     /gene="cas1"
                     /locus_tag="U1404_001351"
     CDS             7139..8053
                     /gene="cas1"
                     /locus_tag="U1404_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEM5348302.1"
                     /translation="MTWRIVHIHQSEKMRLKLDNLVIKKQGDEFTIPLSDISIIVAEG
                     GDTVVTLRLLSALSKYNIALIVCDNHHLPTGIYHSQNGHFRAYKKLQAQLSWAPLQKD
                     KLWQIIIYFKITNQQDVLAMQEKSLSTIQLLSDYREHIELGDRTNREGHAAKVYFNEL
                     FGKQFVRLTQQETDAVNAGLNYGYTIFRAQMARIIAGYGLNALIGIFHKNEYNQFNLA
                     DDLMEPFRQIVDVWVYMNLREADFLTYQHRLELTNLLNAKIRYGKENCSVTVAMDKFV
                     KGFIRCIEDKDTNQFFCPVVSSLEMEKL"
     gene            8050..8373
                     /gene="cas2"
                     /locus_tag="U1404_001352"
     CDS             8050..8373
                     /gene="cas2"
                     /locus_tag="U1404_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001268300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEM5348303.1"
                     /translation="MRYDAMRLLCFFDLPMETTQEKRQYRLFRKELIANGFEMLQFSV
                     YYRTCPNRSFATKFYKKLQQSHLPAGNVRLLAVTEKQFFEMVLIVGGKTRQEEAISDR
                     KLVII"
     gene            8370..>9349
                     /locus_tag="U1404_001353"
     CDS             8370..>9349
                     /locus_tag="U1404_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348304.1"
                     /translation="MKWLITHHVLNNIPIHVGQFTQIVGQNYELKYYIWQILIWYFGG
                     KKYSEEDLILFNQEEPVISQDSEAIKRNAFKIISIAEVGDILEQISYKKGTIGFSYLS
                     LKMQNIEIIEELEILNYHLHKIAQKVNSSISLINDEIEYEVGTTDLLPEQILTKQLTP
                     HFKKSRDEIAIEFISNEKKLCFLLQMLNAIMQEQTKPILLVLKNLDDYLTYDSFVRIA
                     QYLEELSNKYPYFNTILFPSQEGYLYLTEATLETVNIVSDRIEHYPAFTFLYTRYQQS
                     YPSTSPLGEKEFLNSLRKISSYLFSSDINRVVSLADIDLVTLKIVNSLYQ"
BASE COUNT         3034 a         1502 c         2023 g         2790 t
ORIGIN      
        1 gaattaaagt tgagcaaagc attgaaattc cagttgttgg aagcaatgga gttgtgtgaa
       61 aaaggtagta agattagcta tctttcatat aaaatttatc catgggtatt ggaagaacta
      121 gctttgaata ggattcaatc ggataaatta aagatgttta agcgctattt agagcaagaa
      181 aggtggaaat attattttgg ttctgctttg ggaatggcgt ttacttcgat tagataatgg
      241 ttccgaggat ttgtaagtac attgattgtg ctgtgcaact tcgatagaat atgcgaaagt
      301 cccaagaaag agtaatcttg ggacttttac aatctttatt gagattcgtt tttgtttatc
      361 agtcatttac ccacactccg ctgacataat tctcagatag aatggtttga cttaaaactt
      421 tttttgcttg ccagtcatag atgagtgcct taccagccag aatcaataat aatctgttac
      481 cgtctagttg acggacatgg tcaatataat aaggacgagg attaagctcg tctagacgat
      541 ggtagctctc ttgacctgtt tgggtattgt aaatggtaaa agagattggg ctaaacatgt
      601 cattttgatg ttcgatgagg agaagcttct ggtctttgag agcatgtagt gtgcttggtg
      661 aggggtgttc taaagttact gacgaaaatg tttttgtttt tgtatcaaag gttaggagtt
      721 cggatgactg ttcaatgtca gtatactcac ttgttttttt ccctaaattt gggagataga
      781 tggttccatt gacccaaggc ccctctcctg tggcaatggt attgtcgtac ttgaatacct
      841 cttgttttga aaaatctttc ttatcaaata caatcaagac attttcttcg ggtccttctt
      901 gggtaaaatc tttcacaaaa ccagttaaat agactgacgt ttggtccacc atgactggag
      961 catttgggat gaagtcatcg tttaaaacgt gggtttgaat ggtatcaaaa ttcctgtcaa
     1021 attgcgctag tatgtgatag ggccccgctg tataaaagtc ttgtccatct gtaccactga
     1081 tatagctact atactgactt ggctttcgca agacagtgcc agtattgaaa tcgatggata
     1141 tcagattgtc gttaatgaat ttttgctgat cgttggcaaa gactagatac cgactgtcta
     1201 tgacataatt ttcaccagaa ccaaaatacc cttctgaatt cattttttgg gtatgaagca
     1261 gctctggttc ttgaccattt agctgaaagg cttcgacctt accgggataa atcaagtaaa
     1321 aatcagcttc cgacgttaat gtgattgtat tgtgctggta ggcatatagt ttccagccga
     1381 taaatggaaa gacaagacag gatagaagga caatacaaat aagaagtttt ttcatgggaa
     1441 tgccgccttt cactgtttag tatatctaaa tttgtcatct tagacaagaa attatgtgtt
     1501 aatatacaaa taaagtcatg caagttttct tacatgactt ttgttcttat tttccaagac
     1561 agaattggct aaagagttgg gtaatgagtt catctggagc agcatcacct gttatttctc
     1621 ccaaaatttg ccaacagcgt gtcaggtcaa cctgtaacaa gtctactggc atgcccattt
     1681 ccagcccatc gttgacagct tgtaggcttt ggactgcctg ttcaatgagg gaaatgtggc
     1741 gagaattgga gaggtaggtg gcatcttgct cgaccagacc tgcattttca aagaagagtt
     1801 gattgatttt ttcttcgatt tggtcgatat tctggttttt caagacggaa atgcggatga
     1861 catcctcagg cagttggtct gcttcaatct gttcttccag gtcggtcttg ttgagtagga
     1921 cgatacggtt ggccaggtct gaaatggcta ggaggttgcg atcttgctcg gtcaggggtt
     1981 cagatgcgtt gaggactagc aggatgaggt cggcctcctc aagggctttt ttagagcgct
     2041 ccacaccgat tttttcaacg atgtcgtctg tttcacggat acctgctgta tcaatgagct
     2101 tgagggggac gcctttgatg ttgacgtatt cttcgataac gtcgcgggtt gttcctgcga
     2161 tgtctgtaac gatggctttt tcctcgcgga ggaggttatt gagcaggctg gattttccca
     2221 catttggacg accgataata gcggttgcga tgccttcacg caggattttt ccacggcggg
     2281 cagtacggag gagattttct agaagagctt ggaactggag agttttctcg cggaccagct
     2341 ctgtcgtcgc ctcctcgacg tcgtcatact cagggtagtc gatgttgacc tcgacctgtg
     2401 ccagcgtgtt gagaatctcc tggcgggtgt cgttaatgag ctgggagagg gagccgtcaa
     2461 gctggcggac ggcattgtgc atggccttgt cggtcttggc acggataaca tccatgacgg
     2521 cctcggcctg tgtcaaatcc acacgaccgt tgagaaaggc tcgcttggta aactcgcccg
     2581 gctcagccat tcgagcacct tggcgaatca ggagctggag aatttcgttg gtaacggcga
     2641 tgcctccgtg ggtattaatc tcaatgacat cttcgcgcgt gaaggtcttt ggggaacgca
     2701 tgacacccag tatgacctcg tcaagcactt gccctgtcgc agggtcaata atgtggccgt
     2761 agttgaggct gtggctagga accgttgcta agtcctttcc cttgaaaacc ttgctggcaa
     2821 tggcaaaagc atccgtccca gacaggcgga caatcccgat agcgccctca ccgagagggg
     2881 tggaaatggc tgttattgtg tcgaattctt tggtgatcat aataatgtgc tttctaacta
     2941 gaatctgtat ttacaagtaa aatacttgga tataagagat agtttgttgc taatcaaggc
     3001 agttttttgg gggatgggct caagcccagt gccacttctc agagttcgtg tcaacatctc
     3061 agcgcagtgg ttgattggct ttaacagtcc agtggactgt taaaggttgg agataggatt
     3121 tgtgaagcaa atctctgcaa ttcgtgtttc acactccaaa tccgacctct acgactgttg
     3181 cgaacaagtt cgcttcattt ccaacctcca acagtcacta ctctgactgt tggagctgtg
     3241 cgggggtggg agtaaaatag tccggtggag tgaaacagtt tagggaactg tttcagctgg
     3301 tcaccttaaa actagaaagt gaccatagaa gctgaaccta ctgtattgga agtgagggaa
     3361 actcgttttg agatcaatcg agttctttct cactccccaa aaactaacga tgaatagctg
     3421 ataaactagc tttagatgga agtgctgaac tgtgaataca ggttcttaaa tcttacttat
     3481 aagtttaaca tggaatgaag aaaaaagcac attttagaga tgctgataca aagatatgta
     3541 ttgaaaacgt tttgaaaaag gtgtaaaata gatgtggaat aataaagaga aagtaggttt
     3601 tgtatgtcaa acggtaaaat tttaggcctt gatattggta ttgcttccgt cggagtaggc
     3661 gtcatagatg cacaaacggg agaaatcatt catgcaagct ctcgtatttt tccctctgca
     3721 aatgctgcta ataatgcaga acgccgaact tttcgtggaa gtcgtcgatt gattaggaga
     3781 aaaaaacata gaattaaaag attagatgat ttatttaatg attttcatat taatttagat
     3841 ggagaaatgt cgacagataa tccatatgtt cttcgcgtga aaggcctctc tcaaaaacta
     3901 acagttgaag aattatatat ttctataaag aatattatga agcgcagggg gataccctat
     3961 ctagatgatg cagagtcaga taacgaggcg ggaagaagtg attatgctaa agctatcgag
     4021 cgtaatagac agttattgac tagtaaaaca ccaggggaaa ttcagttaga gcgcttagag
     4081 aaatacggtc agttgcgtgg aaatttcacg ataattgatg aggaggggca atctcaacaa
     4141 attatcaatg ttttttcaac atcagattat gtcaaggaag ttgagaaaat tttagattgt
     4201 caaaaaatgt atcataaatt tatatctgat gaattttgcg ataagctgat cgaactatta
     4261 agagaaaaaa gaaagtatta tgttggtcca gggaatgaga aatctagaac tgactatggt
     4321 atttatagaa cagatgggac aactctagag aatttatttg gaattcttat tggtaaatgt
     4381 acattttatc cagatcaata tcgttcttcg agagcgtcct atacagcaca agaatttaat
     4441 tttttaaatg atttaaacaa tttaacagta cctactgaaa cgaaaaagtt aagtcaggaa
     4501 caaaaagaat ttttagtaaa ttatgctaaa gaaacgtcgg tattaggggc tggaaaaata
     4561 ttgcaacaaa ttgcgaaact tgcggattgt aaggttgaag atattagggg gtatcgttta
     4621 gataataagg ataaacccga actacatacc tttgaaacat atcgagcaat gaaaggtcta
     4681 gttccgttag tagacattgg agtattgtcg agagagcagc ttgatatatt agccgatatt
     4741 ctaaccctta atactgattt tgaaggaatt agagaggccc taaaaaaaca attgccaaat
     4801 gtatttgatg aaaaacaggt caaggggtta gcaagtttta gaaagtcgaa aagccaatta
     4861 tttgcaaaag gctggcacaa tctatctcaa aaaattatgc tagaggtaat tccagaatta
     4921 tatgcaacat ctgatgaaca aatgacaatc ttaacacgat taggaaagtt tgagaagagt
     4981 agtgttgctg aatatccttc ctcaattaat gtagatgaga ttacagatga aatatataat
     5041 ccagtcgttg ctaaatctat ccgtcaaacc attaaaatta tcaatgcttc gataaaaaaa
     5101 tgggatgaat ttgatcaaat tgttatagag atgcctcgtg atcggaatga agatgaagag
     5161 aagaagcgaa ttgcggatgg acagaaagca aatgcaaaag aaaaagcgga ttcaatccta
     5221 cgtgcggcag aattgtattg tgctggaaag gtattgccag attatgtcta taatggacac
     5281 aatcagttag caacaaaaat tcgtctctgg tatcaacaag gagagcgttg tatttatact
     5341 ggtcagccga tctcaattca tgatttaatt cataatcaga atcagtatga aattgaccat
     5401 atcttgccac tttctttgac atttgatgat agtttatcga ataaggtttt agttcttgca
     5461 actgcaaacc aagagaaagc tcaacgtaca ccgtataatt atctgaaaag tgctacgtca
     5521 gcttggtcct atcgtgaatt taaggactat gttactaagc gcaaaggaat tgggaagaag
     5581 aaatgtgaat atctgacatt tgaggaagat attaatggat ttgaggtgag aagtaagttc
     5641 attcagcgta acttagtgga tactcgatac gcctctaaag tcattctaaa tgccttacaa
     5701 gattatttca aaatatcagg gatacaaacg aaagtttctg ttgtaagagg tcaatttaca
     5761 tctcaattgc gtcataaatg gggaattgaa aagacacgtg aaacgtatca tcaccatgcg
     5821 gtggatgcct taattattgc agcatcaagt caattaagac tctggaaaaa gcaagaaagc
     5881 ccgcttgttg ttgattacca ggaaggacgt caagtagact tagaaactgg agaaatctta
     5941 gaattgacag atgagcaata taaagaactt gtctatcaac cgccgtatca aggatttgta
     6001 aatactatct ctagctcggc ttttgataat gagatactgt tttcttacca agtagactcc
     6061 aaggtgaatc gtaaaatttc tgatgcaacc atttatgcaa ctcgtaacgc acaacttgga
     6121 aaagataaaa cggaagggat atatgtcctt ggaaaaatca aagatatcta tacacaagct
     6181 ggatatgagg catttttgaa acgttatacg aaggacaaaa cttcttttct aatgtatcat
     6241 aaagaccttg atacttggga aaaagtgatt gagattattt tacgtgacta tagagaatat
     6301 gatgaaaaag ggaaagaaat aggtaaccca tttgaaagat atcgtaggga aaatggttat
     6361 gtgaaaaaat atagccgtaa aggaaatggt actgcaataa aatcattaaa atactatgat
     6421 aataagcttg gaaatcatat cgatattact ccagaaaata gtcgaaatgc ggtagtattg
     6481 cagtcattaa aaccttggag gacagatgta tattttaata aagaaacagg caagtatgaa
     6541 ttcttgggga ttaaatattc tgatctatcg ttcgaaaaag gtactggaga gtatggcata
     6601 agtcaagaaa agtatgattc aataaaaata gcagaaggag ttgcaaaaaa atcgatattt
     6661 aaatttacac tttataaaca agatttatta ttcataaaag atattgaaaa taactttgga
     6721 aaattactta gattcacttc taaaaatgat acaagcaaac attatgttga attaaagcct
     6781 tatgataaga ataagtttgg tacagaggag ccactgttac cagtgctagg aaatgttgcc
     6841 aaaagcggac aatgtataaa aggtcttaac aaatcaaata tatctattta taaagtacgg
     6901 acagatattt taggctatcg acactttata aaacaagagg gagaacaccc tcaattaaaa
     6961 tttaaaaaat aattaaaaaa ggggttgtat tttttaagta aaaagtgtaa actttaactg
     7021 taagggaagc cttacactgt tacttaaatc ttgcagagcc tacaaagata aggctttatg
     7081 ccgaaatcaa gcaccccgtt tcgtacaggg tgcttttcgt tgtaaacagg agaacaccat
     7141 gacttggaga attgtacata ttcatcaaag tgaaaaaatg cgattaaagc tcgacaactt
     7201 agtcataaag aaacaagggg atgagtttac gattccatta agtgatattt ctataattgt
     7261 tgcagaagga ggggatacag ttgttactct tcgcctatta agtgcactta gtaagtacaa
     7321 tattgcttta atagtctgtg ataaccacca cttacctaca ggtatttatc actctcaaaa
     7381 tggacatttt agagcttata aaaagttgca agctcagcta tcatgggcgc cgctacaaaa
     7441 ggataaatta tggcaaatta tcatatattt taaaattacg aaccagcaag atgttttggc
     7501 aatgcaggaa aaatctttgt ctaccattca gttattatct gattataggg aacatatcga
     7561 acttggggat aggacgaata gggaggggca tgccgctaag gtgtatttca atgagctgtt
     7621 tggcaaacag tttgttcgac taacacaaca agagactgat gcagtgaatg cggggttgaa
     7681 ttatggctac acaattttta gagctcaaat ggcacgaatt atagcaggat atggtttaaa
     7741 cgctttaata ggaatttttc ataaaaatga atacaaccaa ttcaatttag cagatgattt
     7801 aatggagccg tttcgacaaa ttgttgatgt atgggtctat atgaatttga gggaagctga
     7861 ctttttaaca taccaacatc gtttggaatt aacaaatcta ttgaatgcca agattagata
     7921 tggaaaagaa aattgcagtg tcaccgtcgc aatggataag tttgtcaaag ggtttattcg
     7981 ttgtatcgaa gataaagaca caaatcaatt tttctgtcca gtagtttcaa gtctagaaat
     8041 ggagaaatta tgaggtatga tgctatgcgc ctgttatgct tttttgactt gccaatggaa
     8101 acgactcaag agaaacgtca gtatcgcttg tttcgaaaag agttgattgc taatggcttt
     8161 gaaatgttac agttttctgt ctattatcgt acgtgtccga atcggagttt tgcaacgaag
     8221 ttttataaaa agttacaaca aagtcatcta ccagctggta atgtgagatt attagcggtg
     8281 acggagaaac aattttttga gatggtccta attgtaggtg gtaagacaag acaggaagaa
     8341 gcgataagtg ataggaagtt ggtaatcata tgaagtggct aataacacac catgtattaa
     8401 ataatattcc aattcatgtt ggtcaattta ctcaaattgt cggtcaaaac tacgaattaa
     8461 aatattatat ttggcaaata ttgatatggt attttggtgg aaaaaagtac agtgaggaag
     8521 atttaatact ttttaatcaa gaggagcctg tgatttcaca ggacagtgaa gcgataaaaa
     8581 gaaatgcttt taaaatcatt tcaatagcag aggttggaga tatcctagag cagattagct
     8641 ataaaaaggg aacgattgga ttttcatatt tgtcattaaa aatgcagaac atagagatta
     8701 ttgaagagct tgaaatatta aattatcatt tacataagat tgctcaaaaa gtaaattcaa
     8761 gcatttcgtt gataaatgat gaaatcgagt atgaggttgg aacgaccgat ttacttccag
     8821 agcaaatttt aacaaagcaa cttactccgc atttcaaaaa gtcaagagat gagatcgcta
     8881 ttgaatttat ttcaaatgaa aagaaattgt gttttctatt gcaaatgttg aatgcaataa
     8941 tgcaagaaca aacaaaacca attttactgg tacttaaaaa tttagatgat tacctaactt
     9001 acgattcttt tgtgagaata gcacagtatt tagaggaact tagtaataag tatccctatt
     9061 tcaacacaat cttgtttcct tctcaagagg gctatttgta cttgaccgag gcaacgcttg
     9121 agactgttaa tattgtgtct gatagaattg aacactaccc tgctttcacg tttctctata
     9181 ctcgttatca gcagtcatat ccctcaacta gcccactagg tgaaaaagaa tttttaaact
     9241 ctttgagaaa aatcagttcc tatttattct cttcagacat taatagagtc gtgagcttag
     9301 cagacataga cctagtaact ctaaagatag ttaattcact ttatcagta
//
LOCUS       DASGCC010000080         9242 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.080, whole genome shotgun sequence.
ACCESSION   DASGCC010000080 DASGCC010000000
VERSION     DASGCC010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9242
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.080"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(38..2827)
                     /locus_tag="U1404_001354"
     CDS             complement(38..2827)
                     /locus_tag="U1404_001354"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM5348305.1"
                     /translation="MKLKETLNLGKTAFPMRAGLPTREPEWQKAWDEANLYARRQELN
                     EGKPAFHLHDGPPYANGNIHVGHALNKISKDIIVRSKSMSGFRAPFVPGWDTHGLPIE
                     QVLAKQGVKRKEMDLVEYLEMCRDYALSQVDKQRDDFKRLGVSADWENPYITLTKDYE
                     AAQIRVFGAMADKGYIYRGAKPVYWSWSSESALAEAEIEYHDIDSTSLYYANKVKDGK
                     GLLDTDSYIVVWTTTPFTVTASRGLTMGADIDYVLVQPAGSDRKYVLAEALVDSLAAK
                     FGWESFEVISKHKGAEFEYIVTEHPWDTEVDELVILGDHVTTDSGTGIVHTAPGFGED
                     DYNVGVKYDLEVAVTVNERGLMNEAAGPDFEGQFYDKVVPTVKEKLGDLLLASEVINH
                     SYPFDWRTKKPIIWRAVPQWFASVSKFRQEILDQIEATTFIPAWGKTRLYNMIRDRGD
                     WVISRQRAWGVPLPIFYAEDGTAIMTKEVTDHVAALFEEHGSIIWWKSEAKDLLPAGF
                     THPGSPNGEFTKETDIMDVWFDSGSSWNGVMNARENLAYPADLYLEGSDQYRGWFNSS
                     LITSVAVNGHAPYKAVLSQGFVLDGKGMKMSKSLGNTILPSDVEKQFGAEILRLWVTS
                     VDTSNDVRVSMDILGQVSETYRKIRNTLRFLIANTSDFNPASDAVAYEELRSVDQYLL
                     VKFNKLVAQIREAYDNYDFMGIYKSVVNFVTLDLSAFYLDFAKDVVYIDGAKSLSRRQ
                     MQTVFYDILVKITKLLTPILPHTAEEIWSYLEHEAEEFVQLAEMPEVETFANEAQLLA
                     DWENFMVFRTQAQKALEEARNAKVIGKSLEAHLTAYVSAETKSFLESLNADLAQLLIV
                     SNLTVTTEAAPESAVLVEEVAFTVERASGEVCDRCRRIDTSVAERSYGATICDHCASV
                     VEENFAEAVAQGFEA"
     gene            complement(2838..3281)
                     /locus_tag="U1404_001355"
     CDS             complement(2838..3281)
                     /locus_tag="U1404_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348306.1"
                     /translation="MIRLELVNKDNFEAVLQVQLAPEDQRRVASVEYSLAQAWLYKDS
                     GMILPYAVVSGRKVVGFAMLSIETKDNSYYLWRLLIDKDFQNRGCGKEVVQQMIGKAK
                     ADPLCHKISINYVIGNHKMRYILEKFGFQPVGLDGQKMKMELIIK"
     gene            complement(3512..4201)
                     /locus_tag="U1404_001356"
     CDS             complement(3512..4201)
                     /locus_tag="U1404_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEM5348307.1"
                     /translation="MALTALELKDKTFATKFRGYDADEVDDFLDIVTRDYEDLIRKNH
                     DQELELKNLRERLAYFDEMKESLSKSVLLAQDTAEKVKVAAEDQAANIIKQADYDAAT
                     LLHEAKDKANEILRNATDNAKKVVIETEELKNQTRIFHQRLKSTVESQLSLVNSSEWE
                     EILRPTASYIQTSDEAFRDVLHKALDEELPVEEESLDYTRQLTPEEIAELTRHAAAFE
                     SGESVVLSIEE"
     gene            complement(4210..5001)
                     /locus_tag="U1404_001357"
     CDS             complement(4210..5001)
                     /locus_tag="U1404_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM5348308.1"
                     /translation="MKNDKNLLQHFSREEREFVEKIMDMCQQVEDTYSYRLTHFLHPR
                     QDEIVCKIANYYQLQTFSSRDLVSTEHSRVIIAPTYYELDIKHFELTALHLSYARKFH
                     TLSHSQVLGTFLNQLGIKREYLGDILIDDERLIVFIDQKFGQIALQSITKVARVPVKG
                     KEEEWTTVRLPIGQEWRSKDVLVSSMRLDKLISVAFNLSRATANKLIEAGHVKLDYVL
                     TEQTSKLVEIGQLISVRRYGRVRLNEFLGFSKQGKIKLKLDIVKT"
     gene            complement(5004..5267)
                     /locus_tag="U1404_001358"
     CDS             complement(5004..5267)
                     /locus_tag="U1404_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEM5348309.1"
                     /translation="MQILIFLLLKIVEIYSYLLLAYALLSWFPSLYTSSIGRLIQWLV
                     APILKPFKRFNLQFMGLDWTVMAAMIALNMGTRFLVQLLLLLA"
     gene            complement(5272..5841)
                     /gene="sepF"
                     /locus_tag="U1404_001359"
     CDS             complement(5272..5841)
                     /gene="sepF"
                     /locus_tag="U1404_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEM5348310.1"
                     /translation="MALKDTFKNLFNYFEVDEVNEVEEQADAYSMPNDRPKMRVANTT
                     VAPVREQQPKVETRREARSESQLQRLHERQQELMTNNNEKEIVKTTIDIKFPKRYEDA
                     PEMVNLLLDNASILIDFQYMSEQQARRCLDYLDGARSVLSGNLKKVSNTMWLLTPVNV
                     TVNIEELRNANAGTTTGAADSNFDFDIKR"
     gene            complement(5858..6529)
                     /locus_tag="U1404_001360"
     CDS             complement(5858..6529)
                     /locus_tag="U1404_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEM5348311.1"
                     /translation="MNFQKNKDAIFSAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQ
                     LVNTGITHIGENRVDQFLEKYNALADKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSV
                     KLAQEIDKRATKIVKCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMA
                     PIDATDDELDEIFSKIQEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIG
                     SAFFE"
     gene            complement(6536..7765)
                     /gene="ftsZ"
                     /locus_tag="U1404_001361"
     CDS             complement(6536..7765)
                     /gene="ftsZ"
                     /locus_tag="U1404_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM5348312.1"
                     /translation="MAFSFEAAASHGAVIKVIGVGGGGGNAINRMIEEGVAGVEFIAA
                     NTDVQALSSSKAETVIQLGPKLTRGLGAGGQPEVGRKAAEESEEALTNVLTGADMVFI
                     TAGMGGGSGTGAAPVIARIAKNLGALTVAVVTRPFGFEGNKRGNFAIEGIEGLREQVD
                     TLLIISNNNLLEIVDKKTPLLEALSEADNVLRQGVQGITDLITNPGLINLDFADVKTV
                     MENKGNALMGIGIGTGEDRVIEAARKAIYSPLLETTIDGAEDVIVNVTGGYDMTLTEA
                     EDASEIVNQAAGQGVNIWLGTSIDETMKDEIRVTVVATGVRQDTADKPARHRMEAVSP
                     RPSQRFDHSVASAPTRGAAQQTEAPKASAFGEWDLRRENLIRPTDTEPTSTVSVEKFT
                     MDHDEDELDTPPFFRNR"
     gene            complement(7791..9170)
                     /gene="ftsA"
                     /locus_tag="U1404_001362"
     CDS             complement(7791..9170)
                     /gene="ftsA"
                     /locus_tag="U1404_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEM5348313.1"
                     /translation="MARNGFFTGLDIGTSSVKVLVAEYIDNEMNVIGVSNVKSAGVKD
                     GIIVNIEVAAGAIKKAIEQAEEKSGIRIEKVNVGLPANLLQIEPTQGMIPVTTDSQEI
                     TDLDVENVVKSALTKSMTPEREVISFIPEEFTVDGFQGIKDPRGMMGIRLEMRGMLYT
                     GPRTILHNLRKTVERAGVQVENIVISPLALTRSVLNEGEREFGATIIDLGGGQTTVAV
                     MRGQELQYTNIYQEGGDYITNDISKVLTTSKSIAENLKYNYGIAYPQDASDKEKFTVE
                     VIGENAPVEVTERYLSEVIAARLRQIFDRVKQDLERTRALDLPGGIVIVGGGAILPGI
                     TELAQEVFGVNTKLFVPNQIGIRNPAFASVISFVEYVGELEDVENIAQHAVNGETTLR
                     HKPVEIPVARPRISQPIQREIVNELNTVDQVEEQVAPIYHDEEEEVRPAAKGNITDRI
                     RGLFGSMFE"
BASE COUNT         2633 a         2143 c         1658 g         2808 t
ORIGIN      
        1 atcgctagat agactttaac aaatgtattg tgattgctta ggcttcaaaa ccttgagcta
       61 ctgcttcagc aaagttttct tccactacgc ttgcacagtg gtcacagatt gttgcgccat
      121 agctgcgctc tgcaacacta gtatcaatac ggcggcaacg gtcacatact tcaccgcttg
      181 cacgctctac agtaaaggca acttcttcta ccaaaacagc actttcagga gctgcttccg
      241 tggttactgt caagtttgaa acgatgagca actgagcaag gtctgcattc aagctctcca
      301 agaaggactt ggtttcagct gagacatagg cagtcaaatg agcttcaagt gacttaccaa
      361 tcactttggc attgcgtgct tcttccaagg ctttttgtgc ctgagtacgg aagaccataa
      421 agttttccca atcagctaaa agctgcgctt cattagcaaa ggtttccacc tctggcattt
      481 ccgccaactg aacaaattct tctgcttcgt gttccaagta agaccagatt tcttctgccg
      541 tatgtggtaa gattggcgtc aagagcttgg taattttcac caagatgtca tagaagacag
      601 tttgcatctg acgacgagaa agtgatttag caccatcaat gtagacgaca tctttggcaa
      661 aatcgaggta gaaggctgac aaatcaaggg ttacaaagtt tactacagat ttatagatgc
      721 ccatgaaatc ataattgtcg taggcttcac ggatttgagc taccaattta ttgaatttca
      781 ccaagagata ctggtcaaca gaacgaagct cttcgtatgc caccgcatca cttgcaggat
      841 tgaaatcaga agtgttggca attaagaagc gaagggtatt acggatttta cggtaggttt
      901 cagaaacctg tccaagaata tccatagaca cacggacatc gtttgaagta tcaacggatg
      961 tcacccacag acgcaagatt tctgcaccaa actgcttctc aacatcactt ggaaggatag
     1021 tatttcctag ggatttagac atcttcatac ctttaccgtc caatacaaag ccctgtgaca
     1081 agacagcctt gtatggcgca tgaccattta cagcaacaga ggtaatcaag gatgagttaa
     1141 accaaccacg gtattggtca gaaccttcta ggtagaggtc tgctgggtag gcaaggtttt
     1201 cacgggcgtt catgacacca ttccaagatg aaccagagtc aaaccatacg tccataatgt
     1261 ctgtttcttt ggtaaattcg ccatttggtg aacctggatg tgtgaaacca gctggcaaga
     1321 gatcttttgc ttctgatttc caccagatga tagaaccatg ctcttcaaaa agggcagcaa
     1381 cgtggtctgt cacttccttg gtcataatcg ctgttccatc ttctgcatag aagattggaa
     1441 gtggcacacc ccaagcacgc tgacgagaga tgacccagtc accacggtca cggatcatgt
     1501 tgtaaagacg tgttttaccc caagcaggaa taaaggtcgt tgcttcgatt tggtccaaga
     1561 tttcctgacg gaatttagaa acagaggcaa accactgtgg cactgcacgc cagatgattg
     1621 gcttcttggt tctccagtca aatgggtagg agtgattgat cacttcacta gcaaggagta
     1681 agtcgcctaa tttttcctta accgttggta caaccttgtc atagaattgc ccttcaaaat
     1741 caggacccgc agcttcattc atcaagccac gttcgttgac agttaccgca acctccaagt
     1801 catatttgac accgacattg tagtcatcct caccaaaacc tggagccgta tggacgatac
     1861 cagtacccga gtccgttgtg acatggtcac ccaagataac caattcatca acttcagtat
     1921 cccatgggtg ttcggtcacg atatattcaa attcagcacc cttgtgtttt gaaatcactt
     1981 cgaaggattc ccaaccgaat ttggctgcca agctatcaac caaggcttct gccaagacat
     2041 acttacggtc agagccagca ggttgaacca agacatagtc aatgtctgct cccattgtca
     2101 aaccgcgaga agccgttact gtaaatggag tggttgtcca gacaacgatg tagctgtctg
     2161 tatccaagag ccccttgcca tctttgacct tgttggcata atacagagat gttgagtcaa
     2221 tgtcatggta ttcgatttca gcttctgcaa gggcagattc agatgaccat gaccagtaga
     2281 caggcttagc accgcggtag atatagccct tgtctgccat agcaccgaag acacggatct
     2341 gagctgcttc gtagtctttt gtcaaagtga tatatggatt ttcccagtct gcagagacac
     2401 ccaagcgttt aaaatcatca cgttgcttgt caacttggct aagagcataa tcacgacaca
     2461 tttcaagata ttcaactagg tccatttcct tgcgtttaac accttgtttt gccaagactt
     2521 gctcaatagg aaggccgtgc gtatcccaac ctggtacaaa tggagcacgg aaaccagaca
     2581 ttgacttaga gcgaacgata atatctttag aaatcttgtt taaagcatgt ccaacgtgga
     2641 tatttccgtt agcgtatgga gggccatcgt ggaggtggaa ggcaggtttg ccttcattga
     2701 gttcttggcg acgagcatac aagtttgctt catcccaggc cttttgccat tctggctcac
     2761 gtgttggtaa gcctgcacgc ataggaaatg ctgtcttacc taaattgagt gtttctttta
     2821 gtttcatcat aactccttta ttttataatt aattccattt tcattttttg accatctaaa
     2881 ccgacaggct gaaagccaaa tttttctaag atgtaccgca ttttatgatt accaatgaca
     2941 taatttatag aaattttatg acaaagcgga tccgccttcg cctttccaat catttgctgg
     3001 acgacttcct ttccgcatcc acgattttga aaatccttat caatcaacaa gcgccataaa
     3061 taataactat tatctttggt ttcgatagat aacattgcaa aaccaacaac ttttctgcca
     3121 gataccacag catatggtag aatcatcccc gaatctttat ataaccaagc ttgggctaat
     3181 gaatattcaa ctgatgctac tcggcgttgg tcctcaggtg caagttgaac ttgtaacact
     3241 gcttcaaagt tatccttgtt tactaattct aatcgtatca taaaaataaa aaaactcccg
     3301 ccaaataagg acgaaagttc gtggtaccac cttagtttag atagagtttc ccctatccct
     3361 ctatgttcgt aacgtgaaca gacgtctctc cttactattt tcaggaaaaa tcaaacaaag
     3421 tgatgatcca tagaaagaga ttgtagggct tccaccatct cctactcgct taaaatattt
     3481 ctaacgacct tgtctttgct tatgatttct attattcttc tattgaaagt actacagatt
     3541 ctccactctc aaaagctgct gcatgacgag ttaattccgc aatctcttct ggtgtcaatt
     3601 gacgtgtata atccaaactt tcttcttcaa caggtaattc ttcatccaaa gccttatgaa
     3661 gaacatcacg aaaggcttcg tcacttgttt gaatgtaact tgctgttggg cggaggattt
     3721 cctcccattc agatgaatta accagtgata attggctttc tactgttgat ttcagacgct
     3781 gatggaaaat acgtgtctgg ttttttaatt cttcagtttc aatgacaact tttttcgcgt
     3841 tgtcagtcgc attacgaaga atttcatttg ccttatcttt agcttcatgt aacaatgttg
     3901 ccgcatcata gtcagcttgt ttaataatat ttgccgcttg atcttcggcc gcaaccttta
     3961 ctttctcagc tgtatcttga gctaaaagaa ctgatttact caatgattct ttcatctcat
     4021 caaaataagc caaacgttcc cgcaaatttt tcaattctaa ctcttgatca tgatttttac
     4081 gaattaaatc ctcataatca cgtgttacaa tgtccaaaaa gtcatcaact tcatctgcgt
     4141 cgtatcctct aaattttgta gcaaaggttt tatcttttaa ttctaatgct gtaagtgcca
     4201 tctttcctcc taagttttaa caatgtctaa ctttaatttt atcttccctt gcttagaaaa
     4261 acctaaaaat tcatttaggc gaactctacc atatctccta acactaatta attgccctat
     4321 ttcaactaat ttactggttt gttctgtcag aacataatcc aacttcacat gtccagcctc
     4381 aatcaacttg tttgcagttg cccttgaaag attaaatgcg accgaaatca atttatccaa
     4441 tctcatacta gaaaccaaca catcctttga acgccattcc tgtccaatcg gtagtcgaac
     4501 agtcgtccat tcttcttcct ttcccttaac agggacacga gcaactttag tgatagattg
     4561 taaggcaatc tgcccaaatt tctgatcgat aaagacaatc aatcgttcat catcaatcaa
     4621 aatatcaccc aaatactccc ttttaatccc tagttgattg agaaaagttc caagaacttg
     4681 tgaatgggat aaggtgtgaa attttctagc ataggacaaa tgaagagcgg ttaactcaaa
     4741 gtgcttgatg tccaactcat aataagtcgg ggcaataata acccgcgaat gttctgtcga
     4801 aacaaggtca cgactagaaa acgtttgtaa ctggtagtag ttagcaattt tgcatacaat
     4861 ttcatcttgt ctaggatgta aaaagtgagt taatctgtat gaatacgtat cttcaacttg
     4921 ctgacacata tccattattt tctctacaaa ctctctttct tccctagaaa aatgttgcaa
     4981 taagtttttg tcatttttca taactatgct aacagtagca ataattgaac caagaagcgt
     5041 gttcccatat taagcgcaat catggctgcc attacggtcc aatccaaccc cataaattgt
     5101 agattaaatc gcttaaaggg ttttaaaatc ggtgctacca gccattgaat caaacgacca
     5161 atcgagcttg tgtataggct aggaaaccaa cttagcaaag cgtatgccaa taagagataa
     5221 gaataaatct ctacaatttt taatagtaaa aaaatcaaaa tttgcatagc gttaccgttt
     5281 tatatcaaaa tcaaaatttg aatcagccgc accagtagtt gtaccagcat tagcattgcg
     5341 caattcttca atattgactg tgacatttac tggagttaat agccacatgg tatttgagac
     5401 cttttttaaa tttccagata atactgaacg agcaccatcc aagtagtcta ggcaacgtct
     5461 tgcttgttgc tccgacatat attgaaaatc aatgagaata ctcgcattgt ctaataaaag
     5521 atttaccatc tctggtgcat cttcataacg ttttggaaac ttaatatcaa ttgtagtttt
     5581 gacaatctct ttttcgttat tattagtcat caattcttgc tgcctttcat gtaggcgttg
     5641 aagttgactt tctgaacgtg cttcccgacg tgtctctact tttggctgct gttcgcgcac
     5701 aggtgcaact gtagtattgg caacacgcat tttaggacga tcattaggca ttgaataggc
     5761 atctgcctgt tcttcaactt cattgacttc gtcaacttca aagtaattaa ataagttctt
     5821 aaatgtatct tttaatgcca tattttcctc ctctccatta ttcaaagaat gctgagccaa
     5881 ttctcacata tgtagctccg tgagcaatgg cgcgttcaaa gtccccactc attcccatac
     5941 ttaactctgt aaagggcata cgtggtaagt tccttgtagc tagttcttct tggatttcct
     6001 gtattttaga aaaaatctcg tctaattcat catctgtagc atcaatcggt gccatcgtca
     6061 tcaatccaac aagttcaatg ttctccaata aactaatttc agcaagtgcc gcatcaatct
     6121 cagatactgc aaagccatgc ttactctcct caccggaaac gttgacttgg aggaaacact
     6181 tgactatttt agtcgcacgt ttatctattt cctgagctag tttgacagag tctagggcgt
     6241 ggaaataatc aacaaatgga ataatgtcct tgacctttct tctctgtaaa gtccctatca
     6301 aatgccatgt caattgtttg tctgctaggg cattatactt ttctaagaac tgatcgactc
     6361 gattttctcc aatatgagta attccagtat tcactagctg attagcaata gagctgtcaa
     6421 catatttggt gacagctatt acctttactg attcacttgg acgacctgcc ttctcagcag
     6481 cttttgcaac tgctgaaaag atagcatcct tattcttttg aaaattcatt ttagtttagc
     6541 gattacggaa gaatggtggt gtatccaatt catcctcatc atgatccatt gtaaattttt
     6601 cgactgaaac agtggatgtt ggttctgtgt cagttggacg aatcaagttt tcacgacgca
     6661 aatcccactc tccgaaggca gaagctttcg gcgcttcagt ttgttgtgca gctccacgag
     6721 ttggtgctga tgctactgaa tgatcaaagc gttgagaagg gcgtggtgaa acagcttcca
     6781 tgcgatggcg ggctggttta tcagcagtat cttgacgaac acccgtagcc acaacggtca
     6841 cacgaatctc atctttcatt gtttcatcaa tagatgtacc caaccaaatg ttaacacctt
     6901 gacccgcagc ctgattaacg atttctgaag catcttctgc ttctgtcaga gtcatgtcat
     6961 agccacctgt aacattgaca atgacatcct ctgcaccatc aattgttgtt tcaagaagag
     7021 gagaataaat cgctttacga gccgcctcaa tcactcggtc ctcaccagta ccgataccga
     7081 tacccatcaa ggcgtttcct ttgttttcca taactgtctt cacatctgca aagtccaagt
     7141 taatcaaacc aggatttgta atcaagtctg taattccttg aacaccttga cgaagaacat
     7201 tatcagcttc gcttagtgct tctaaaagcg gtgttttctt atcaacaatt tcaagaaggt
     7261 tgttgtttga aataattaaa agtgtatcta cttgttcacg aagaccttca attccctcaa
     7321 tcgcaaagtt tccacgttta tttccttcaa aaccaaacgg acgagtcaca actgcgacag
     7381 tcaacgcacc caagttttta gcaatacgtg caataacagg agccgcacca gtccctgagc
     7441 caccgcccat accagcagtg atgaagacca tatctgcacc agttaataca ttagtcaatg
     7501 cttcttcgct ttcctcagca gctttccgac caacctcagg ttgacctcca gcacccaaac
     7561 cacgagtcaa tttaggacct agttggataa ctgtttcagc tttagagcta cttagcgctt
     7621 gtacatctgt gtttgctgca ataaactcaa ccccagcaac accttcttca atcatacggt
     7681 taatcgcgtt cccgccacca ccgccgacac cgattacttt aatgacagca ccatgactag
     7741 ctgctgcttc aaatgaaaat gccatagttt aaatcacctt ttcttttctc ttattcaaac
     7801 atgctgccaa ataaaccacg aatgcgatct gtgatgtttc ccttagcagc tggacgaact
     7861 tcttcttcct catcatggta aataggagca acttgttcct ctacctgatc aactgtgttc
     7921 aattcgttca cgatttctct ttgaattggc tgactaatcc gaggacgagc aacaggaatt
     7981 tcaactggct tatgtctcaa ggtagtttca ccatttactg catgttgggc aatattttct
     8041 acatcttcta actcaccaac atactcaaca aagctaatca cacttgcaaa tgctggattg
     8101 cggataccaa tctgatttgg aacaaaaagc ttagtgttaa caccaaacac ttcttgggcc
     8161 aattctgtaa ttcctggtaa gatagcacca ccacctacaa taacaatgcc tcctggtaaa
     8221 tctagagcac gtgtacgctc caaatcttgt ttcacacggt caaaaatctg acgcagacgt
     8281 gccgcaatca cttctgaaag gtagcgctcg gtcacttcaa ctggagcgtt ttctccaatc
     8341 acttcgacag tgaatttttc cttatcactt gcatcttgcg gataggcaat gccgtagttg
     8401 tatttcaagt tttcagcaat actctttgaa gttgtcaata cttttgaaat atcgtttgtg
     8461 atataatctc caccttcttg gtagatgttt gtgtattgca actcttggcc acgcataaca
     8521 gccacagtcg tttgaccacc accaagatca atgatagtcg caccaaactc acgttcacct
     8581 tcattcaata cagagcgagt tagtgccaac ggagaaatta caatattttc aacttggaca
     8641 cctgcacgct ccaccgtttt acgaagattg tgaagaatgg tacgtggacc tgtatacagc
     8701 ataccacgca tttccaagcg aattcccatc attccacgag ggtccttaat gccttggaat
     8761 ccatcgacag tgaactcttc tggaataaat gaaatcactt cgcgttccgg agtcatactc
     8821 tttgtcaatg ctgattttac aacattctca acatccaagt ctgtaatttc ttgtgaatct
     8881 gttgtaacag gaatcatccc ttgagtcggt tcaatctgaa gaaggttggc aggtaatcca
     8941 acatttacct tttcaatgcg gatacctgac ttttcttctg cctgctcgat cgctttttta
     9001 atcgctccag cagccacctc aatatttaca ataattccat ctttgacgcc agcacttttt
     9061 acattgctga ccccaatcac attcatttcg ttatcaatat attctgcaac caagacttta
     9121 acggagcttg taccaatatc taatcccgta aaaaagccgt ttctagccat tctatcagtc
     9181 ctctcttact tccaacttta acaaatcatc ttccattttg aaaaatagta taattagtca
     9241 tc
//
LOCUS       DASGCC010000081         9215 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.081, whole genome shotgun sequence.
ACCESSION   DASGCC010000081 DASGCC010000000
VERSION     DASGCC010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9215
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.081"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(314..952)
                     /locus_tag="U1404_001363"
     CDS             complement(314..952)
                     /locus_tag="U1404_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEM5348314.1"
                     /translation="MRWGIVVEQLTVLYQNLKRRYGEFHWWNDENPIKDLVSMILIQQ
                     TTEANAKRALEQLEGRLTIHSLLEMPVEDLQECIRPAGFFKQKSLYIRSVVEWANQFD
                     GDFSRLDRVETAVLRKELLSLKGVGNETADVILLYLCRRSIFVADQYALRLFNRLGLS
                     QSQDYLSLRQEFTEQIKDWSVKDAQELHALIDEHGKQFRLTKGQLDESWLMI"
     gene            complement(1000..1920)
                     /locus_tag="U1404_001364"
                     /pseudo
     CDS             complement(1000..1920)
                     /locus_tag="U1404_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922588.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
     gene            complement(2022..2648)
                     /locus_tag="U1404_001365"
     CDS             complement(2022..2648)
                     /locus_tag="U1404_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5348315.1"
                     /translation="MKIAIIAANGQAGQTIAKEAVERGHQVTAIVRSENKSVAQEVIQ
                     KDAFALTKEDLAGFDVVVNAFGAWTPETLPDHARLAEHLATILAGSPTRLLVVGGAGS
                     LYLDESQTAMLKDTPDFPAEYLPIAEAMGTGLDLYRQATAVNWTYISPAADFDAEGQK
                     SGAYTLAGEVFQVNAQGESYISYADYAVALVDIAEKGGYQQERISVLA"
     gene            complement(2887..3306)
                     /locus_tag="U1404_001366"
     CDS             complement(2887..3306)
                     /locus_tag="U1404_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5348316.1"
                     /translation="MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRN
                     ILSQLKEAGLVEVARGVGGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSC
                     QVGRNIHPLLDSRLENAQSALENELAKTRLADLLAEL"
     gene            complement(3349..4416)
                     /gene="dinB"
                     /locus_tag="U1404_001367"
     CDS             complement(3349..4416)
                     /gene="dinB"
                     /locus_tag="U1404_001367"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEM5348317.1"
                     /translation="MLIFPLINDLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGAD
                     PRLSGGRGVVSTCNYEARAFGIHSAMSSKEAYECCPQAIFISGNYEKYQEVGRQVREI
                     FHRYTDLVEPMSIDEAYLDVTENKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKF
                     LAKIASDMEKPYGLTLILPEDAVGILASLPVEKFHGVGKKTVERLHEMGVYTGQDLLD
                     VPEMVLIDRFGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTYRKLLYREEDVLKEL
                     ISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIE
                     EIGKIEKGIRLLGVTVTNFQT"
     gene            4731..7076
                     /gene="pflB"
                     /locus_tag="U1404_001368"
     CDS             4731..7076
                     /gene="pflB"
                     /locus_tag="U1404_001368"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM5348318.1"
                     /translation="MSTKVKTKNVAEDIFAQAWEGFKGTDWQDKASVTRFVQANYTPY
                     DGDESFLAGPTERSLHIKKIIEETKAGYEDTRFPMDVDRATSIADIPAGFIDKENELI
                     FGIQNDELFKLNFMPRGGIRMAETTLIENGYTPDPLLHEIYTKHATTVNDGIFRAYTA
                     DIRRSRHSHHVSGLPDAYSRGRIIGMYARLALYGADYLMEEKVADWNAITEIDEESIR
                     LREEINMQYQALQQVVRLGDHYGVDVRKPAMNTKEAIQWTNIAFMAVCRVINGAATSL
                     GRVPIVLDIYAERDLARGTFTESEIQEFVDDFVLKLRTVKFARTKAFDEIYSGDPTFL
                     TTSMAGMGNDGRHRVTKMDYRFLNTLDNIGNSPEPNLTVLWSDQLPYSFRRYCMAMSH
                     KHSSIQYEGVTTMAKDGYGEMSCISCCVSPLDPESEDQRHNIQYFGARVNVLKALLSS
                     WNNGYDDVHKDYKVFDGVEPNTSEIFDYDQVIANFEKALDWLTDTYVDAMNIIHYMTD
                     KYNYEAVQMAFLPTHLRANMGFGICGFANTVDSLSAIKYAQVKPIRDEDGFIYDYEVT
                     GDFPRYGEDDDRVDDIAKWLMEAFFSRLNKHKLYKNAEATVSILTITSNVAYSKQTAN
                     SPVHRGVFLNEDGSVNTSKVEFFPPGANPTSKSRGGWLQNLNTLSKLNFKHANDGISL
                     TTQVSPKALGKTFDEQVNNLVTILDGYFEQGGQHVNLNVMDLNDVYDKIMAGEDVIVR
                     ISGYCVNTKYLTKEQKTELTQRVFHEVLSMDDHAAEVSGQA"
     gene            complement(7487..8434)
                     /locus_tag="U1404_001369"
     CDS             complement(7487..8434)
                     /locus_tag="U1404_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HEM5348319.1"
                     /translation="MRQAILDKISEQIGQGVYPGASLALFSEGQWQEYYLGTQDGHTP
                     VEAGLTYDLASVSKVVGVGTLATFLVNSGALELDRTLQSYYPAFVDSQVTIRQLLTHT
                     SGIDPFIPNRDSLDADQLKEAILKITVTDKKDFLYTDINFLLLGFLLEEIGGDRLDQL
                     ISRDVLEPFGMSQTSFGPVSQAVPTVRGVKAGLVHDPKARVLGLHAGSAGLFSTVKDL
                     EIFLERYLTEDFAANLTQDYGFDDKRKRSLAWDKKGDWLSHTGYTGTFIMYNRPLQKA
                     AIFLSNRTFDKDERAQWKLDRNQVMALIRQVLEEEEAID"
     gene            complement(8431..9165)
                     /locus_tag="U1404_001370"
     CDS             complement(8431..9165)
                     /locus_tag="U1404_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5348320.1"
                     /translation="MLRKNEAIVPVLRINNRAINQGFLEKNLGMKTKLEDGSFADFGD
                     RTSPETKLVLTESPGNRTRAVEGLKKLNKIVIKVDNASEIEALLAQGSQYSKLYQGKN
                     GYGFEAVSPEGDTFLLHAEASVDDLKAILPPVPFKMQDDFSGLTAFTVESIWINTPQA
                     SISQDYYEAILPQQAFLRFVGAEGEDLLTPAEQVWDLEGLRFPVEQDFDWAHLESQLE
                     GPFFKDKKASFIQTVDPSGIELWFEK"
BASE COUNT         2709 a         2191 c         1724 g         2591 t
ORIGIN      
        1 tcattttatc ttggaaaata actccaatta atataaaaaa agagcaacca actgaaccgc
       61 tggttttact cttttatagt cgtttcgttt gcttttagta caaggcaacg atatgcaggc
      121 tacttcaact gtccagtgga gtgtttaaac tcggaaataa ggaaatgaga cttcctcgcc
      181 cttcagtaat aaaaaataca ctaattgata ctcaatgaaa atcaaaatca agctaggcga
      241 cgcaaatgca gatagaactg aggttcatca aatcatgtca acaacgtctg attttgattt
      301 tcgaagagta tgactatatc atcaaccatg attcatcaag ctgccccttt gttaacctga
      361 actgcttgcc atgttcatca atcagtgcat gaagctcctg agcgtctttt accgaccaat
      421 cttttatctg ctctgtaaat tcctgtctca aactcaaata atcctgagac tggctaagtc
      481 ctaaacgatt aaatagccga agagcatatt gatccgccac aaaaatactt cttcgacaca
      541 aatagagcaa aataacatcc gcagtttcat tgccaacccc cttcaagctc agcagctctt
      601 ttcgaagtac tgctgtctca acacgatcta ggcgagaaaa atctccatcg aactgattgg
      661 cccactcaac cactgaccga atgtagagtg atttttgctt gaagaatcct gctgggcgaa
      721 tgcattcttg taaatcctcc acaggcatct ctaaaagcga atgaattgtc aaccgtccct
      781 ccaactgttc taaagcacgc ttggcatttg cttccgttgt ttgctgaata agaatcatag
      841 ataccaaatc ctttatagga ttttcatcat tccaccagtg aaattcacca tatcgccgtt
      901 ttaaattttg gtaaagaacc gtcaactgtt ccactactat cccccatctc accttgtttc
      961 tccttgccat tatagcacga tgagtaaagg gatacaatac tacagttcct ctagtactat
     1021 tgtatctaca atcgcttcaa actgctctgc ttcaacctct ggaaaataat tcaaacaatt
     1081 ggctgttgca aaggctgccg cttctttcaa aaagatttct ggggcttgac cttgactgat
     1141 tcctttgact agcaagccca ggtagaaatc ccctgcggca ataggattac gcgtttcttt
     1201 ctttggagac taaatacgga agaagcgctg accaatctta gctagactcc ccttgtctcc
     1261 catggtaatg atgatattct catgaggagt cacttctttc aggataccta aaatagcttc
     1321 aggactttct tcatccagct ctggataaat atctttcagc tcttcattat tgattttgat
     1381 aagggccggt ctagcttgat aagccgcacg taaagctggt ccactggtgt ccactatggt
     1441 cagaacctct gggtattttt caataaaccg ctgaatatag tcatccggca tccccttcat
     1501 cagactacct gaaaagacta ggatgtcacc agcttgcagg ctattttcaa tctgctgagt
     1561 gaattggttg agcaagtcct ctgttagttc aaaacctttt tcataaaata gtactacatc
     1621 gcctgtactg gtttcaacat agatattaca tgtccgagta ttctggctat tttcaaccac
     1681 gcgcagggca tttccaccat cagcattaag ctcctgaata tagcgaccaa tctgcccacc
     1741 taaaatggta tggatagtgt agtctgtcac tccattttct cgaagtgcat aggctacgtt
     1801 gaaacttttt ccaccaggat aatccctcac ttccgtcggt ctcaggggaa tattcttttc
     1861 aatcttttcc acaagaagcg tgcggtctag ggctggattg ggacaaatca agtgaatcat
     1921 ggggttctcc ttttcttttt atttatatta ttatactata tgcaagtaaa aaataaaaag
     1981 ataattcctc gatggagcta tcttttagac catttaattt tttatgcaag tacggaaatt
     2041 cgttcctgct ggtagccacc tttttccgca atgtcaacca aagccacagc atagtcggca
     2101 taactaatat agctttcacc ttgggcattg acttggaaaa cctcgccagc caaagtgtag
     2161 gcacctgatt tttgaccttc tgcatcaaaa tctgctgctg ggctgatata ggtccagttg
     2221 accgctgtcg cctgacgata gaggtctaga ccagtaccca tagcctcagc gattggcagg
     2281 tattccgcag ggaaatctgg tgtatctttc agcatagctg tctggctctc gtctaaataa
     2341 agactgcctg caccaccaac tactaaaaga cgagttggac taccagcaag tatggtcgct
     2401 agatgctcag caagacgagc gtgatccggc aaggtttctg gtgtccaagc accaaaagca
     2461 ttaactacta catcaaagcc tgccaaatct tctttggtaa gagcaaaagc atccttctgg
     2521 attacttctt gggctacgct cttgttttca gaacggacaa tagccgtcac ctgatgacca
     2581 cgttctactg cttcctttgc aatagtttga cctgcttgac cattcgctgc aataatagca
     2641 attttcatat tgatacctca cttgtttcgt tgtaacaact tcgtttacaa cgtaagtata
     2701 aattattttg gttgtaacgt caattgttac agcttgaaaa ttaaaaaaat catcacaagg
     2761 atgattcact aactagtctt ttagtgctag ggcaacactc tacagactac ttcaacagtc
     2821 cagtggagtg tttgaagtag gaaataggga aacaaagttt ctccttacgt tgacctaata
     2881 aaacgactat agttccgcca agagatcagc aagccttgtc ttagcaagtt cattttccaa
     2941 agccgactga gcattttcca aacggctatc tagcagagga tgaatattgc gacctacttg
     3001 gcaggaagga ttcggttgct catgaaaagc gaataattga cctttttctc caaataactc
     3061 cacagcctga tagacatgca aaagtgtaat ctggtctgga ccctgtgcca agcgagcacc
     3121 cccaacacca cgcgctactt ctaccagacc agcctccttg agttgggaca aaatatttcg
     3181 gataatgaca ggattaaccc cgacactgcc tgcaatgcta gtactggtct gtttttcttt
     3241 ttctccttcc agagccaaga gaaccaagat atggctggca gtggtaaatc tacttgaaat
     3301 ttgcatctct tctccttttt ttcagtctat catagactga aacagaactc aagtttgaaa
     3361 attagtcacg gtcacaccca gcaaacgaat ccctttttca atcttcccaa tttcttcaat
     3421 tagttgacga acctctttct caatcgtttc cgtttggtcc gtatacacct ctagactatg
     3481 acgtttcgtc aaggtagaaa aatcaccata acgtaccttt aaaacaattg ttcgcccctt
     3541 ttttccattt cgcttcaaac tggctgcgac ccgttggcag agactgatta gctctttcag
     3601 gacatcctcc tcccgataaa gaagtttgcg ataggttctt tcctttccaa ttgacttacg
     3661 aacacggtcc actttaacgg gcgaatttga aatccccctc gctttccgat aaaggtcgaa
     3721 gccaaaacgg ccaaatctat ctatcaaaac catttctggt acatctagta aatcttgccc
     3781 cgtgtagacc cccatctcat gcaggcgttc caccgtcttc ttccccacac cgtgaaattt
     3841 ttcaacaggc agggaggcga gaataccaac agcatcttca ggtagaatca aggtcaaacc
     3901 gtacggtttt tccatatcag atgcaatttt tgccaaaaat ttattatagg aaacacctgc
     3961 ggaagctgtc agatgcaatt cattccaaat atcgtattgg ataagcttgg caatcttaac
     4021 cgcagagctg atgcccaact tattttctgt tacatccaag taagcctcat caatagacat
     4081 gggctccacc aaatcagtat agcgatgaaa aatttctcga acctgtcgcc caacttcctg
     4141 atatttttca taattgccag aaatgaaaat cgcctgagga caacactcat aggcctcttt
     4201 tgaggacata gccgagtgaa tcccaaaggc acgcgcctca taattacagg tagataccac
     4261 tcctctaccg ccagatagtc ttgggtcagc cccaatgata acaggtttgc ccttcaaagc
     4321 gggattatcc ctgacctcaa tggcagcaaa aaaagcatcc atatctacat gaataatttt
     4381 tctagataaa tcattgatta agggaaaaat taacatgact gcctcttcct gtttacaagt
     4441 ttgactcgct atattatacc gcatttctta ggaagtttca gcctttagat tcgttgaacc
     4501 agccatctta tcaatacaat aaacgacagc ttatcacctt attacaaata caagcagaaa
     4561 tttattttga aaataccaac tctatctttc aattttttca tattccttga aaggtttttc
     4621 atttattttc aagtattttt gtcttgtaga aagtgttttc aaatggtata ataatgacat
     4681 gttggtatcg atagcaagtc gatacccaaa agcataaaag gagaaccctc atgtcaacaa
     4741 aagttaaaac aaaaaatgtt gctgaagaca ttttcgccca agcctgggaa ggctttaaag
     4801 gtacagattg gcaagataag gcaagtgtaa cacgcttcgt tcaagccaac tacactccat
     4861 acgatggaga tgaaagcttc ctcgcaggcc caactgagcg ttcacttcat atcaaaaaaa
     4921 tcatcgaaga aacaaaagct ggctacgaag acactcgctt cccaatggac gtagatcgtg
     4981 ctacttctat cgctgatatt ccagcaggtt tcatcgataa agagaacgaa ctcatcttcg
     5041 gtatccaaaa cgatgagctc ttcaaactca atttcatgcc acgtggtggt attcgtatgg
     5101 ctgaaacaac tcttatcgaa aacggctata ctccagaccc actccttcat gaaatctata
     5161 caaaacacgc tacaactgta aatgacggta tcttccgtgc ctacacagct gacatccgcc
     5221 gttctcgcca ctcacaccac gtttctggtc ttccagatgc atactcacgt ggtcgtatca
     5281 tcggtatgta cgctcgtttg gcactttacg gtgcagacta cttgatggaa gaaaaagtag
     5341 ctgactggaa tgcgattact gaaatcgacg aagaatcaat ccgtcttcgc gaagaaatca
     5401 acatgcagta ccaagcattg caacaagttg tacgcttagg tgatcactat ggtgttgatg
     5461 ttcgcaaacc tgcaatgaac actaaagaag ctatccaatg gacaaacatt gctttcatgg
     5521 ctgtatgtcg tgttatcaac ggtgcagcaa cttctcttgg tcgtgtgccg atcgttcttg
     5581 acatctatgc agagcgtgac ttagctcgtg gtacatttac tgaatctgaa atccaagaat
     5641 ttgttgatga cttcgtattg aaacttcgta cagtgaaatt cgctcgtaca aaagccttcg
     5701 acgaaatcta ctctggtgac ccaacattct tgacaacatc tatggcaggt atgggtaacg
     5761 atggtcgtca ccgtgttact aagatggact accgtttctt gaacacactt gacaacatcg
     5821 gtaactctcc agaaccaaac ttgacagttc tttggtcaga ccaacttcca tattcattcc
     5881 gtcgctactg tatggcaatg agccacaaac actcttctat ccaatacgaa ggtgtgacaa
     5941 caatggcgaa agatggttat ggcgaaatgt catgtatctc ttgctgtgta tctccacttg
     6001 atccagaaag cgaagaccaa cgccacaaca ttcagtactt cggtgctcgc gtaaacgtcc
     6061 ttaaagctct tctttcaagc tggaacaacg gctacgacga tgttcacaaa gattacaaag
     6121 tgttcgatgg tgttgaacca aatacttctg aaatctttga ctacgatcaa gttattgcca
     6181 actttgaaaa agcccttgac tggttgactg acacttatgt agatgcaatg aacattatcc
     6241 actacatgac tgacaagtac aactatgaag cagttcaaat ggcattcttg ccaactcacc
     6301 ttcgtgcaaa catgggcttc ggtatctgtg gcttcgcaaa tactgttgac tcattgtctg
     6361 ctatcaagta cgcacaagtg aaaccaatcc gtgacgaaga tggcttcatc tacgattacg
     6421 aagtaactgg cgacttccca cgttatggtg aggatgacga ccgtgtagat gacatcgcga
     6481 aatggctcat ggaagcattc ttctctcgct tgaacaagca caaattgtac aagaatgctg
     6541 aagcaactgt gtctatcttg acaatcactt caaacgttgc ttactctaaa caaacagcta
     6601 actcaccagt tcaccgcggt gtattcctca acgaagatgg ttctgttaac acttctaaag
     6661 tggaattctt cccaccaggt gccaacccaa cttctaaatc tcgtggtggt tggttgcaaa
     6721 acttgaatac tctttctaaa ctcaacttca aacatgctaa cgacggtatc tcattgacaa
     6781 ctcaagtttc accaaaagct cttggtaaaa cattcgatga gcaagtgaac aacttggtga
     6841 caatccttga cggatacttc gaacaaggtg gtcaacacgt caacttgaac gttatggact
     6901 tgaacgacgt ttatgacaag attatggcag gtgaagatgt tatcgttcgt atctctggat
     6961 actgcgtaaa cactaaatac ctcactaaag agcaaaaaac tgaattgact caacgtgtct
     7021 tccacgaagt tctttcaatg gacgaccacg ctgctgaagt ttcaggtcaa gcctaatcaa
     7081 gcaaacataa aaggacttgc acatgcaggt cctttttact atgtcgaaaa atcttctgag
     7141 tgctacggaa ggatagttat agtcttttag tttactttta gtactaggca acgagctgcg
     7201 gacagcttgt acagtcgagt gactgtgcaa ggttggagat agcacttgcg gagcaagtcc
     7261 ccccccctgc agagtacggc aaagcgagtt caaatactcc agtggagtgt ttgaagttgg
     7321 aaataaggaa acgatgtttc ctcgatcgtc gaagtaataa aagaaaaact aaatgactga
     7381 tatatactca atgaaaatca aaagtagcct aagaaacgaa gtcgaagata caactggagt
     7441 tcatcaaggc aagttgacaa tggataattt tgattttcga agagtattag tcaatagcct
     7501 cttcttcctc cagaacttgc cgtatcagag ccataacctg gtttctatcc aacttccact
     7561 gggcgcgctc atccttgtca aaagtacgat tcgagagaaa aatcgcagct ttctgcaagg
     7621 gacggttata catgataaag gtccccgtat agcctgtgtg cgacaaccag tcccccttct
     7681 tatcccaagc cagagaccgc ttgcgcttat catcaaaacc gtaatcctgc gttaaattcg
     7741 ccgcaaaatc ctcagttaga tagcgctcca aaaagatttc cagatcctta acggtcgaaa
     7801 agagacctgc acttcccgcg tggaggccaa ggacacgcgc cttagggtca tgtaccagac
     7861 ccgctttcac gccacgcacc gtcggtaccg cctgactgac tggtccaaag gaggtttggg
     7921 acatgccaaa gggctctaga acgtctcgac taatcagctg gtccagacgg tctccaccta
     7981 tttcctccaa taagaagccc agcaagagaa aattaatgtc tgtgtagagg aaatctttct
     8041 tatccgttac ggtaatcttc aaaatcgctt ccttaagctg gtcggcatcc agactatccc
     8101 gattgggaat aaagggatca ataccactag tatgggtcaa taattgccga atggtgacct
     8161 gactatccac aaaagcagga taataagact gcaaggtcct atctagctcc aaagctccgc
     8221 tattaaccag aaaagtcgca agagtcccca caccaaccac cttggaaaca gacgccaaat
     8281 cataggtcaa acccgcctca actggcgtat gcccatcctg ggtccctaga tagtactcct
     8341 gccactgtcc ctcagaaaaa agagccagac tggcaccagg ataaactcct tgcccaatct
     8401 gctctgaaat cttgtctaaa attgcttgtc tcatttttcg aaccacaatt caataccact
     8461 tggatcaacc gtttgaataa agcttgcttt tttatcttta aagaatggtc cttccaactg
     8521 gctttccaaa tgcgcccaat caaagtcctg ctcgacggga aaacgcaatc cttctaaatc
     8581 ccaaacttgt tctgcaggag ttaataaatc ctcaccttct gctccaacaa aacgcaaaaa
     8641 ggcttgttga ggtaggatag cctcataata gtcttggctg atactagcct gtggggtatt
     8701 aatccaaata gactctactg taaaagcggt cagaccagaa aagtcatcct gcatcttaaa
     8761 tggaacaggc ggaaggattg cttttaggtc atcaacagat gcttctgcat gtaaaaggaa
     8821 ggtgtctcct tctggcgaca cagcttcaaa accatagcca ttttttcctt ggtagagctt
     8881 actatactgt gacccttgcg ccagtaaagc ttcaatttca gaggcattgt ctacttttat
     8941 cacaatttta ttcaattttt taagcccttc gacagcacgg gtgcgattac caggagattc
     9001 tgtcaaaacg agcttcgttt ctgggcttgt tctatctcca aaatcagcaa aagaaccatc
     9061 ttctagcttg gttttcattc ctagattttt ttctaaaaat ccttgattaa tagccctatt
     9121 attaatacgt aaaacaggga ctatagcttc attttttctc aacacgatac atttcactcc
     9181 tcagtcattc tacaatattg tataaaaaat ttcgt
//
LOCUS       DASGCC010000082         8850 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.082, whole genome shotgun sequence.
ACCESSION   DASGCC010000082 DASGCC010000000
VERSION     DASGCC010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8850
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.082"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            117..1634
                     /gene="malQ"
                     /locus_tag="U1404_001371"
     CDS             117..1634
                     /gene="malQ"
                     /locus_tag="U1404_001371"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM5348321.1"
                     /translation="MKVRQSGVLMHISSLPGKYGIGSMGQSAYEFVDFLVRTKQRYWQ
                     ILPLGTTSYGDSPYQSFSAFAGNTHFIDFDILIDKGWLAAEDLHGVDFGQNPTEVDYA
                     AIFYARRPLLEKVVANMKAQGLPEDYWMFLGENDFWIHTFAEYMAIKEHFDLKPWTEW
                     EDQGARLRYHDTLEYYRHLLADRIDYHRITQYLFFSQWKALKAYANAKGVEFVGDMPI
                     YIAADSADMWANPHFFKTDEEGKPSVVAGCPPDAFSEIGQLWGNPIYDWEAMKHDGFT
                     WWVARLRESFKIYDMVRIDHFIGFASFWEIPAGEETAVNGYRVEAPGFELFDTIKREL
                     GDLNIIAEDLGSVADKVIQLRDTTGFPGMKVLQFAFDPEGDSIEMPHNHPNNVVAYTG
                     THDNDTILGWYENETTKESRAFLDKYSNRREGETVSHALFRLLFGSPAFMAVATMQDL
                     LGLDGSARMNLPNTLGGNWTWRMTADQLTPEIEAELLDLTETYRRVNVHLVDEKS"
     gene            complement(1677..1859)
                     /locus_tag="U1404_001372"
     CDS             complement(1677..1859)
                     /locus_tag="U1404_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348322.1"
                     /translation="MKKLPTYIGVIIFVVTLLINWLLPSLAKVLNTFFIWTIVACLLY
                     TIYYWIRYWLYVRQQR"
     gene            1971..2492
                     /locus_tag="U1404_001373"
     CDS             1971..2492
                     /locus_tag="U1404_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5348323.1"
                     /translation="MKRPIHLYIFVILSSIASILRLFSAFVSTFNEERLRTSVQGVVG
                     IDVEELILVSRETANLQTGVIQKIVAVVMLGLLIAVIVFLFMKKNELASYLYIGYLFS
                     TLLLNTYSYLAGKGIANLYSDAALRDVTAASMLGAYILNIVLFAIYFGVTIFFHLRKP
                     KEKPSTAINSTDI"
     gene            complement(2546..3460)
                     /locus_tag="U1404_001374"
     CDS             complement(2546..3460)
                     /locus_tag="U1404_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEM5348324.1"
                     /translation="MKKFLRRKGIACQLLAAIFIVGINLQSPPSASANARGDDYPYTA
                     VDAVDPWRLYTRQCTSFVAFRLSTVNGFTLPPAYGDANVWGHRAKQEGYQVNMTPTVG
                     AVAWWETPMHVAWVSAVNGDTVEIEEYNYGVRYTYGRRVIPKNAVSGYIHFKDLGAGT
                     TNSQPALAPSDTYTFNNQLAIKSQASLSSPTLDYYYAGESVRYDKVLEADGQRWISYI
                     SYSGARRYIAIQPTITQSTNNSLPASGSYTIQSYSSVRNNPSLSSPEITFYGAGSVVR
                     YDKVITAEGRTWISYISYSGARRYIAIS"
     gene            complement(3640..5328)
                     /locus_tag="U1404_001375"
     CDS             complement(3640..5328)
                     /locus_tag="U1404_001375"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEM5348325.1"
                     /translation="MNQKQVIAERLAAILPSLEVEAIYNLLEKPKSSEMGDIAFPAFS
                     LAKVERKAPQAIAADIVEKLDTTGFEKVVATGPYVNFFLDKAAISHQVLTDVITEKDQ
                     YGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVIGDALANIHEKLGYKPIRINHLGD
                     WGKQFGMLIVAYKLWGDKAAVEADPISELLKLYVRINAEAEEKPELDDEARQWFKKLE
                     DGDPEAHELWQWFRDESLVEFNRIYDKLDVTFDSYNGEAFYNDKMDEGIQILEEKGLL
                     QESKGARIVDLESYNLPPALIMKTDGATLYITRDMATAMYRKRTYDFVKSIYVVGQEQ
                     INHFKQLKAVLKEMDFDWSDDMTHVTFGLVTKDKKKLSTRKGNIILLEPTLDEAISRA
                     LTQIEAKNPDLENKEEVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQ
                     YAYARIQSILRKANFVPSAENDYKLADAESWDIIKHIQNFSNVVERAGDKFDPSLIAK
                     YAINLAQAFNKYYAHTRILDESPERDSRLALAYTTGLVLKEALRLLGVKAPEKM"
     gene            5435..5875
                     /gene="argR"
                     /locus_tag="U1404_001376"
     CDS             5435..5875
                     /gene="argR"
                     /locus_tag="U1404_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5348326.1"
                     /translation="MNKAGRHDLIKAMIRQEKIGRQTDIQQGLEARGVVVTQTTLSRD
                     LRELGVIKIHENGRSFYSLAIEEERVNFIQLLAQYAYKVDRASFILVLHSELGEAALM
                     ANIIDAEKPETILGTLAGANTLLVICRDDVAAQQVEAEINYYLN"
     gene            5890..8430
                     /gene="mutS"
                     /locus_tag="U1404_001377"
     CDS             5890..8430
                     /gene="mutS"
                     /locus_tag="U1404_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEM5348327.1"
                     /translation="MATEKISPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAA
                     QILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAVGVV
                     KREVVQVITPGTVTDSSKMGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTS
                     LCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDEVTEDVQLIDNSLTDLEKA
                     AAGKLLSYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLY
                     WLLDETKTAMGMRLLRTWIDRPLIDLKRIENRQAIVQVFLDYFFERSDLVEALKGVYD
                     IERLASRVSFGKTMPKDLLQLSQTLGNIPAIKNILQQINEPALGNLVAGLDPIPELHA
                     LISSAIDPEAQGTITDGNIIRTGFDETLDQYRLVIREGAGWIAEIEAKEREASGINNL
                     KIDYNKKDGYYFHVTNSNLGNVPDHFFRKATLKNSERYGTEELAKIEGQMLEARDKSA
                     NLEYEIFMRIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELT
                     IDRGRHAVVEKVMGKQTYIPNSIHLNTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQM
                     GSYVPADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDE
                     LGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEK
                     DGQVTFLHKIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLENQAPTAPTTPAPI
                     VVEEPSGQIDLFADTPSHPVLDELAKLDIYNMTPMEVMMAVAELKKKI"
     gene            8683..>8850
                     /locus_tag="U1404_001378"
     CDS             8683..>8850
                     /locus_tag="U1404_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348328.1"
                     /translation="MKIILTIVYSLGVVWNILFLAVNVGRIPVINLLWPAVILVACAI
                     NLYFLWTRKQES"
BASE COUNT         2351 a         1709 c         2198 g         2592 t
ORIGIN      
        1 aatggcatgt gaactaacag aattaaatgg aaattccttg atttgttacc gttttcagta
       61 tataataaaa aagagaaaac gtttgcgttg tgcaagcgga ttagatagga gaacttatga
      121 aagtaagaca gagtggtgtg ctgatgcaca tttcatcatt accagggaaa tatggaattg
      181 gttccatggg acaatcggct tatgaatttg ttgatttttt ggtaagaact aagcaacgct
      241 attggcaaat cttacctttg ggaacaacca gttatggaga ttctccttac cagtcatttt
      301 cagcttttgc agggaatact cattttattg atttcgatat attgattgat aaaggctggc
      361 tggcagcaga ggatttacac ggtgttgact ttgggcagaa tcctacagag gtagattacg
      421 cagccatttt ttatgctcgc cgtccattac tggagaaggt agttgccaac atgaaggcac
      481 aaggcttgcc agaagattat tggatgttct taggggagaa tgacttttgg attcatacct
      541 ttgcggagta tatggctata aaagagcatt ttgatctcaa accttggaca gagtgggaag
      601 atcaaggggc gcgcttacgt taccacgata ccttggaata ttatcgtcac ttgttggcag
      661 atcgaattga ttatcaccgc attacacaat atttattctt ttcacaatgg aaggctttaa
      721 aggcttatgc caatgctaaa ggtgttgagt ttgttgggga tatgccgatt tatatcgcgg
      781 ctgattctgc tgatatgtgg gccaaccctc atttctttaa aacggatgaa gaaggcaagc
      841 cgagtgtggt tgcaggatgc ccaccagatg ccttttcgga aattggtcag ctttggggca
      901 atccgattta tgattgggaa gcgatgaagc atgacggatt tacttggtgg gttgctcgtt
      961 tacgtgaatc ctttaagata tacgatatgg tacgtatcga ccactttatc ggctttgcct
     1021 ccttctggga aattccagcg ggtgaagaaa cagctgtaaa tggctatcgt gtcgaagcac
     1081 caggttttga gttatttgat acaatcaaac gtgaactcgg agacttaaat atcatagctg
     1141 aggatttggg ctctgtggca gacaaggtca tccaattacg tgatacgaca ggttttcctg
     1201 gtatgaaagt cctgcagttt gcttttgatc cagaaggaga cagcattgaa atgccacata
     1261 accatcctaa taatgtggtg gcatatacgg gaacccatga caatgatacg attcttggct
     1321 ggtacgaaaa tgaaacaacg aaagaatcgc gtgcattctt agataagtac agcaatcgtc
     1381 gtgaggggga aacggtcagt catgctcttt tccgtctgct ctttggttca cctgccttta
     1441 tggcggtggc tactatgcag gacctacttg gtttggatgg ttcggctcgc atgaacttgc
     1501 caaatacgct tggtggtaac tggacttgga gaatgacggc ggatcaattg acaccagaga
     1561 ttgaagcgga attgctagac cttacagaaa cctatcgtcg ggttaatgtg catttggttg
     1621 atgaaaagtc ataataaaat gaactcctct aagcagctaa cttagaggag tctttgttat
     1681 ctctgttgtc ggacatagag ccagtagcga atccagtagt agatggtgta gagtaggcag
     1741 gctacgatag tccaaatgaa aaatgtattc agcactttag caagacttgg caataaccag
     1801 ttaatcagta gggtaactac aaaaataatc actccgatat aggtgggcaa tttcttcatg
     1861 agttttcctc ctttgaactt agtataacaa aattatattt gcagtcaaat gaaatatatg
     1921 attgacaata taaaaatatg agtataaaat atagaaaaaa ggaggctatt atgaaaagac
     1981 cgattcattt gtatattttt gtgatactat ccagtattgc cagtatttta aggctgttta
     2041 gtgcctttgt gtcgactttt aatgaggagc gacttcgtac gtctgttcag ggagttgttg
     2101 ggattgatgt agaagaattg attcttgttt cgcgagaaac agctaatctc cagacaggtg
     2161 tcattcaaaa gatagtagcc gtggtcatgc ttggtctttt gattgcggtc attgtcttct
     2221 tattcatgaa gaaaaatgag ctggcttctt atctttacat cggctatcta ttttcgacct
     2281 tactgctgaa tacctatagc tacctagcag gtaaggggat tgccaacctc tactcagatg
     2341 cagccttgcg tgatgtgaca gcagcaagta tgctaggggc ttacatcctt aacattgtcc
     2401 tatttgccat ctattttggg gtaactattt tcttccatct gcgtaaaccg aaagaaaaac
     2461 cgagcacagc tattaattcg acagatattt aatgaaaaaa gcacagtcta aaagattgtg
     2521 cttttaaatt ttgtcttttt tgtgattagg agatggcgat gtagcgtcga gcacctgagt
     2581 aactgatata gctaatccat gtgcgacctt cggcagtaat aactttatca tagcgaacga
     2641 ctgagccagc tccgtagaag gtgatttcag gactggacag acttggattg ttgcggacac
     2701 tagagtagga ctggatggtg tagctacctg atgctggtag gctgttgttt gtagattgag
     2761 taatggtagg ctggatggcg atatagcgcc gagctccaga atagctgata tagctaatcc
     2821 agcgttgtcc gtcggcttcg agaaccttgt cgtagcggac gctttcgcca gcataatagt
     2881 aatcgagggt aggactagat agactagctt gagatttgat ggctagttgg ttgttaaaag
     2941 tataggtgtc gcttggggct aaggcgggtt gagagttggt tgttcccgct ccgaggtctt
     3001 taaaatgaat gtagccgcta acggcatttt tggggataac tcgccttccg taggtatagc
     3061 gaacaccgta gttgtattcc tcaatctcta cggtatctcc atttactgca gaaacccatg
     3121 cgacatgcat gggagtttcc caccaggcaa cggcgccgac agtaggtgtc atgttaactt
     3181 gatagccttc ttgtttggca cgatggcccc aaacattggc atcaccatag gcaggtggca
     3241 atgtaaaacc gttaactgtg ctaagtcgaa aggctacaaa ggaggtgcac tggcgtgtgt
     3301 agagtctcca tggatcgact gcatcaactg ctgtgtaggg atagtcatct cctcgtgcat
     3361 tggctgaggc tgaaggtggg gattgtaaat tgataccgac aataaaaatg gcggctagaa
     3421 gctgacaggc gattcctttt cttctcaaaa attttttcat tatttctcct tgtgtagtag
     3481 atgtagaagt atcacgtgta cctcccatct atatattcgt aattgaaatg aatctttttg
     3541 attttcattt gggataagga gttgttgtga taaggaatcg gaaacgagag taggcaatgt
     3601 ggtagaaaaa aagcctcggc tgatggccga aggctttgat tacatttttt ctggtgcttt
     3661 tacgccgaga agacgtagag cttctttgag gacaagtcct gttgtgtagg caagtgctag
     3721 acggctgtca cgctctgggc tttcatccaa gatacgagtg tgtgcgtagt acttgttgaa
     3781 ggcttgcgcc aggttgatag catatttagc aatgagggat gggtcaaatt tgtcaccagc
     3841 acgttctaca acgtttgaga agttttggat gtgcttgatg atgtcccagc tttctgcatc
     3901 agccagtttg tagtcatttt ctgcgcttgg tacaaagttt gccttgcgta ggatagactg
     3961 gatgcgggcg tatgcgtatt gtacataagg acctgtttcg ccttcgaagg aaaccatagc
     4021 ttctaggtcg aagtcgtagc cgttgtcacg gtcggttttg aggtcgtaga acttaacagc
     4081 gcctacacca actgcgtgtg ctacttcttc cttgttttca aggtcagggt ttttagcttc
     4141 gatttgagta agggcgcgtg aaatagcttc atctagagtt ggctcgagta ggatgatatt
     4201 tcctttacga gtggatagct ttttcttgtc cttggtaacc agaccgaagg tgacatgggt
     4261 catatcgtcg ctccagtcga aatccatttc tttcaagaca gccttgagtt gtttgaagtg
     4321 gttgatttgc tcctgaccaa cgacatagat gcttttcaca aagtcgtaag tacgtttgcg
     4381 gtacatagct gttgccatgt cacgtgtgat gtaaagtgtt gcaccgtctg ttttcatgat
     4441 gagggctggt gggagattgt agctttcaag gtcaacgatt ctcgcacctt tagattcttg
     4501 aagaagtcct ttttcttcta agatttggat gccttcgtcc atcttatcgt tgtagaaagc
     4561 ttcgccatta tagctgtcga aagttacatc gagtttgtcg taaatgcggt tgaattcgac
     4621 caagctttca tcacggaacc attgccatag ctcgtgtgct tctggatcgc catcttccaa
     4681 ttttttgaac cattgacgtg cttcgtcgtc caactcaggc ttttcttccg cttcagcgtt
     4741 gatacgcaca tagagtttaa ggagttctga aattgggtct gcttcgaccg cagccttgtc
     4801 accccaaagt ttgtaggcaa caatcaacat accaaattgt ttaccccagt cacccaagtg
     4861 gttgatgcgg attggcttgt agccaagctt ttcgtggatg ttagcaaggg catcaccgat
     4921 aacggttgag cgcaaatgtc caactgagaa tggtttagca atgtttgggc tagacatgtc
     4981 gatggttaca ttgcgtcctt gaccaatgtt gagtttaccg tattggtctt tttcagtaat
     5041 aacatctgtc aagacttggt gggaaatcgc agctttgtcc aagaagaagt tgacgtaagg
     5101 accggtagct acaaccttct caaagccagt tgtatcgagt ttttcaacga tgtccgctgc
     5161 gatagcctgt ggagccttgc gttccacttt agcaagtgag aaggctggga aggcaatatc
     5221 gcccatttct gatgattttg gtttttctag cagattgtag atagcttcca cttccaaact
     5281 cggaaggatg gcagccaatc tttctgcaat cacttgtttt tgattcatat aggatttcct
     5341 ccaaagttat tgattctatt ttaacacatt tctaggctaa tagcggggaa aagtgttata
     5401 atatttctat aaatatacat tttgaggtaa aatgatgaat aaagcaggac gacatgattt
     5461 aataaaggcc atgattcgtc aagaaaaaat agggcgacaa acggatattc agcaaggttt
     5521 agaggctcga ggggtagtgg taacccagac aaccttgtct cgtgatttac gtgagttggg
     5581 agtgataaaa attcatgaaa atggacgttc attttattcc ttagctatcg aagaagagcg
     5641 cgtgaatttt atccaattat tggcacaata tgcgtataaa gtagataggg ctagttttat
     5701 tttggtcctt cattcagaac tgggagaagc ggccttgatg gccaatatca ttgatgcaga
     5761 aaagccagag actattttgg gaacgctggc gggagctaat acgcttttag ttatttgtcg
     5821 agatgatgta gcggctcagc aagttgaagc ggagattaac tactatttga attagaacag
     5881 ggagagatga tggcaacaga aaaaatttct ccgggaatgc agcagtatct ggatataaaa
     5941 gcacagtatc cagatgcttt tttgcttttc cgtatgggag acttttatga attattttat
     6001 gaagatgcgg tagaagcggc acagattttg gaattgtcct tgaccagtcg gaataagaat
     6061 gcggaaaatc cgattcctat ggcgggggta ccgtatcacg cggcacaaca gtatatcgac
     6121 acacttgttg aactggggca taaggtcgct attgctgagc agatggaaga tcctaagcag
     6181 gcagtcggcg tggtcaagcg ggaagtagta caggtcatta ctcctggtac ggtaacagac
     6241 tcgtccaaaa tgggagcaga tagtaactat ttggttgcga ttgaccgtca gggagtgcag
     6301 tttgcacttt cttatatgga tgtgtcaaca ggtcagtttt ttgtgactag tttggatgat
     6361 tttactagtc tttgcggtga gatccgcaat ttacgggcac gtgaattggt catcggctat
     6421 gctttatctg aggaagaaga gcaggtcttt tcaaaccaga tgaacctcct actctctttt
     6481 gaagatgagg tgacagagga tgtccaattg attgataact ccttgacaga tttggaaaag
     6541 gctgcggcgg gcaaactcct cagctaccta catcggactc agatgcgaga tctgagccac
     6601 ttgcaaaagg tggtccacta tgaaatcaag gactatctgc aaatggacta tgcaaccaag
     6661 tccagtctgg acctgcttga aaacggtcgg acaggcaaga agcatggtag tttgtactgg
     6721 ttgttagacg aaactaagac agccatgggt atgcgactat tgcggacatg gattgatcgt
     6781 cccttgattg accttaagcg gattgagaat cgtcaggcta tcgttcaggt ttttctggat
     6841 tacttctttg aacggagtga cttggttgaa gctttaaaag gtgtctatga catcgaacgc
     6901 ttggctagcc gggtatcttt tggaaaaacc atgccaaagg atctcttgca gctctcccag
     6961 actctgggaa atatcccagc aatcaagaat atcttgcaac aaatcaatga gcctgctcta
     7021 ggcaatttgg tggctggatt ggacccaatc ccagaactgc acgctctcat cagctctgct
     7081 attgacccag aagcccaagg gaccatcaca gatggaaaca tcatccgtac gggctttgat
     7141 gaaacgctgg atcagtatcg tctggtcatt cgtgagggag cgggttggat tgcggagatt
     7201 gaggctaagg agcgtgaagc gtctggtatc aataatctta agattgatta caataaaaaa
     7261 gacggttact atttccatgt taccaattcc aatctgggca atgtgccgga ccattttttc
     7321 cgtaaggcga ccttgaaaaa ctcggagcgc tatggaacgg aagagttggc taagattgaa
     7381 gggcagatgt tggaggcgcg tgataagtct gctaatttgg agtacgagat tttcatgcgg
     7441 attcgccaag aggttgagaa gtatataggt cgcttgcaga agctggctcg gaccattgca
     7501 accatcgatg ttttgcaggc ctttgcagtt gtggcggagc agcaacattt ggtttgtcca
     7561 cgctttacag atcaaagaga actgaccatt gaccgtggtc gtcatgcggt ggtggagaag
     7621 gtcatgggca agcagaccta cattcccaac tctattcact tgaataccga tacgcatatg
     7681 caactgatta ctggtccaaa catgagtggt aagtctacct atatgcggca gttggcggtt
     7741 atcgtcatca tggcgcagat gggttcctat gtgcctgcgg atcaggctga attaccgatt
     7801 ttcgatgcta ttttcactcg tattggggcg gcagacgact tggttagtgg tcaatcgacc
     7861 ttcatggtcg aaatgatgga ggccaataag gcagtccgtc tggcgacaga tcggtcactc
     7921 atcctctttg atgagttggg gcggggaacg gccacctatg acggtatggc cctggcccag
     7981 tctatcatcg agtacatcca cgacaagatt ggagccaaga ctctctttgc tacccactac
     8041 catgagttga cagaccttag ccagaccttg gaacacctag agaatgtcca tgtatcgacc
     8101 ttggagaagg acggtcaagt caccttcctc cacaagattg cccaaggtcc agctgacaag
     8161 tcctacggga ttcatgtggc taagattgcg ggaatgccag aggaactatt gcagcgggcg
     8221 gacaggattt tgcagacgct tgaaaaccaa gctcctactg caccaactac cccagctccg
     8281 atagtcgtgg aagagccgtc tggtcaaatc gacctcttcg cagacacgcc ttctcaccca
     8341 gtcctcgatg aactggcaaa actggatatc tacaatatga cccctatgga agtcatgatg
     8401 gcagtggcgg agttgaagaa aaaaatataa gacaatgaaa gtcaggacaa ttgttctggc
     8461 ttttttgccg tttagtcagt ttaggtgtta ttctcggaac cattatttct ctcataacct
     8521 cttctattgt cggacaagga acttatctac ctcttctggt ttatctttac cttggtatac
     8581 gctttgctat ttttcctaaa ccatcggaaa atggagcggc aaatcaagga cattaacggt
     8641 cgtttgtagt ataatagcac tatcattttg ttggagtgtt ttatgaaaat tattttgacg
     8701 attgtctata gcttgggagt ggtgtggaat atcctctttc ttgcggtaaa tgttggcaga
     8761 attccagtca tcaacttgct ttggcctgct gtgattttag tggcctgtgc tattaacctg
     8821 tactttttat ggactagaaa acaagagtca
//
LOCUS       DASGCC010000083         8831 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.083, whole genome shotgun sequence.
ACCESSION   DASGCC010000083 DASGCC010000000
VERSION     DASGCC010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8831
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.083"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            141..815
                     /locus_tag="U1404_001379"
     CDS             141..815
                     /locus_tag="U1404_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEM5348329.1"
                     /translation="MSEQFIPSVLSDLRQDIVQMPEVIKECSGIRIYGRRIRSVLFTT
                     DVSIIANHNADAILAVYPFTPSPAIIKSIMLVASVPVLAGVGGGLTTGMRSANMSLLS
                     ESEGAYAVVVNGPTDVKTIEAINKVVDIPIIYTVVSEKSDLTSRIKAGVDILNVSCGM
                     ETPRVVKKIREAFPDFPIIATGGPTDDSIRRVIEAGANAVSYTAPSNGELFKGKMEKY
                     RKHAKD"
     gene            1033..1335
                     /gene="gatC"
                     /locus_tag="U1404_001380"
     CDS             1033..1335
                     /gene="gatC"
                     /locus_tag="U1404_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017644687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEM5348330.1"
                     /translation="MKISEAEVRHVAKLSKLEFSDQETAEFATSLSKIVDMVELLNEV
                     DTTGVAVTTTMADRKNVLRADIAQKGESREELFKNVPETQDNFIKVPAILDGGGDA"
     gene            1335..2801
                     /gene="gatA"
                     /locus_tag="U1404_001381"
     CDS             1335..2801
                     /gene="gatA"
                     /locus_tag="U1404_001381"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014295200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEM5348331.1"
                     /translation="MTFNNKTIDELHDLLVKKEISALELTKATLEDIKSREGAVDAFL
                     TITEDAALAQAAALDEKGIDADNVMAGIPLAVKDNISTKGILTTAASKMLYNYEPIFD
                     ATSVSQAYAKDMIVVGKTNMDEFAMGGSNENSAFKPTKNAWDQTKVPGGSSGGSAAAV
                     AAGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGTVSRFGLIAFGSSLDQIGPFSQTV
                     KENAQLLNVISGHDVKDATSTINEIADFTSKIGQDIKGMKIALPKEYMGEGIDPQVKE
                     TILKAAKHLESLGAIIEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGIRYGFRAEDA
                     TNLEEIYVKTRSQGFGEEVKRRIMLGTFSLSSGYYDAYFKKAGQVRTLIIQDFEKVFA
                     DYDLILGPTAPTVAFGLDTLNHDPVAMYLADLLTIPVNLAGLPGLSIPAGFVEGLPVG
                     LQLIGPKYSEETIYQVAAAFEATTDYHKQQPVIFGGAN"
     gene            2801..4240
                     /gene="gatB"
                     /locus_tag="U1404_001382"
     CDS             2801..4240
                     /gene="gatB"
                     /locus_tag="U1404_001382"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEM5348332.1"
                     /translation="MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSF
                     PGVLPVLNKGVVDAGIKAALALNMDIHKDMHFDRKNYFYPDNPKAYQISQFDEPIGYN
                     GWIEIELEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR
                     SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEKFGTKTELKNLNS
                     FNYVRKGLQHEVERQAKILRSGGQIQQETRRYDESTGETILMRVKEGSADYRYFPEPD
                     LPLYEIDDSWIDEVRAELPVFPKARRAHYVENLGLTTYDAGQLTSTKALSDFFEAAVA
                     AGGDAKQVSNWLQGEVAQFLNAEGKTIEQIALTPENLVEMIALIADGTISSKIAKKVF
                     VHLAKEGGSAKAYVEKAGLVQISDPAVLIPIIHQVFADNEAAVADFKSGKRNADKAFT
                     GFLMKATKGQANPQVAQQLLAQELAKLLD"
     gene            4558..4713
                     /locus_tag="U1404_001383"
     CDS             4558..4713
                     /locus_tag="U1404_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HEM5348333.1"
                     /translation="MPMGNSSKSDGKEEHLLTAFEVVQTILGFGSFTIALIGLCYKIF
                     KDNDKKK"
     gene            complement(5016..6014)
                     /locus_tag="U1404_001384"
     CDS             complement(5016..6014)
                     /locus_tag="U1404_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5348334.1"
                     /translation="MVTIKDIAKQAHLSSATVSRVLKGDLTLSVSQETRDRIFNLAQD
                     LGYTKHLKKQAPQQKGTIGIVQWYTESEELADLYYYSIRASIEQTASLLGYQIIRSFN
                     DLTHPLLQEVDGIIAVGKFSSGQIAELTNLSSKLIFVDSDTLTEGFSCITTDFEHSVQ
                     TVIDHFRSQGLTDIGLLVGQEETTDGYQLPTDPRLTAFRDYLDTLGMLQEDYIYQGKF
                     STQSGYELMSQAIEDLGDQLPPAFFMANDTLAVGALRALQERQIAVPGRVQLITFNDT
                     AITRQVYPALSSISVFTEEMGQEAMQLLDRVIASPQPHHPRKIKLGTQLVIRESSY"
     gene            6147..7319
                     /locus_tag="U1404_001385"
     CDS             6147..7319
                     /locus_tag="U1404_001385"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEM5348335.1"
                     /translation="MNTEQLKQAFLDVFGQEADATFFSPGRINLIGEHTDYNGGHVFP
                     AAITLGTYGAARKRDDQLLRFYSANFEELGIIEVDLNNLVFDKADNWTNYAKGVLKFL
                     QEAGHAIDTGMEVFVYGNIPNGSGLSSSASLELLIGIIAEELYGLELTRLDLVKIGKQ
                     TENHFIGVNSGIMDQFAIGMGADNRAIYLDTNTLEYDLVPLDLGDHVIVIMNTNKRRE
                     LADSKYNERRAECEKAVEELNAVLNIQTLGELDEWTFDQYSYLIKDENRIKRARHAVL
                     ENQRTLQARKALEEGDLATFGRLVNASHVSLEHDYEVTGLELDTLAHTAWEQEGVLGA
                     RMTGAGFGGCGIAIVHKDKVEAFTENVGKTYTEVVGYEPSFYVAEIAGGSRVLSRK"
     gene            7329..8810
                     /gene="galT"
                     /locus_tag="U1404_001386"
     CDS             7329..8810
                     /gene="galT"
                     /locus_tag="U1404_001386"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--hexose-1-phosphate
                     uridylyltransferase"
                     /protein_id="HEM5348336.1"
                     /translation="MMAGLVDRFVEQVIANSDFEEMDALYLHNRVLALVGDQVLTVQT
                     DLEDLIELKDELLAHGVRTGFVGELLEEQDMVGACLMDLMTPSPSQVNRDFWQTYQDS
                     PEQAIGDFYELSKRNDYIKMAAIAKNIYYQVSTEYGDLEITINLSKPEKDPKSIAAAT
                     KAEASNYPKCLLCMENEGYQGRINHPARANHRIIRLELGQEKWGFQYSPYAYYNEHAI
                     FLNQEHVPMVISPRTFEQLLDLLDLLPGYFVGSNSDLPISGGSILTHNHYQGGRHSFA
                     MEKAPIERQLVFDGFESVSAGIVKWPMSVIRLSSADKPSLLGLATKILEKWRSYSDDN
                     VQIKAETDGTPHHTITPIARKRGDLYELDLVLRDNQTSEEFPDGIYHPHPDVQHIKKE
                     NIGLIEVMGLAILPPRLKAELAEVEKFLLGQDSQVADYHQPWAESLKTAHPDVTEETV
                     EQVVRESVGQIFARVLEDAGVYKRTPEGQAAFLRFVEFVGLAT"
BASE COUNT         2407 a         1676 c         2232 g         2516 t
ORIGIN      
        1 gcgaaagctg tctttttttt aatctgttga aaaagtattt aattgtgaaa gcagtggtaa
       61 aatggactgt ttttgtgtat cttccatgaa ataatatgtt atactatata ttattgtagc
      121 tagtatagag gaggttgcgg atgagcgaac agtttattcc atctgtttta tcagatttac
      181 ggcaggatat tgttcagatg ccagaagtta tcaaggaatg tagtggaatt cgtatttatg
      241 gtcgtcgcat tcgttcagtc ttatttacaa cggatgtgtc tattattgcc aatcacaatg
      301 cagatgctat tttggctgtt tatccattta cgcccagtcc agctattatc aaaagtatta
      361 tgttggttgc gtcagttcca gtcttggctg gtgttggtgg aggcttgacg acaggtatgc
      421 gttcagctaa tatgagtcta ttgtctgagt cggagggagc atacgctgtt gtggtaaatg
      481 gaccaacgga tgtaaaaaca attgaggcaa tcaataaggt agtagatatt cctatcattt
      541 ataccgttgt ttctgaaaag tctgatttaa cctcacggat taaagctgga gtagatattt
      601 taaatgtttc ttgcggtatg gaaacgccaa gggttgtgaa gaagattcga gaagctttcc
      661 ctgactttcc aattattgcg actggtggtc cgactgatga ctctattcgt cgggttatcg
      721 aagctggagc caatgctgtc tcctatacag caccaagtaa tggggagctt tttaaaggga
      781 aaatggaaaa ataccgcaaa catgcaaagg attagctcat aaaaaagata ggctaagcaa
      841 acagtaagtt ttattgctag atgaaacttg ctgtttttta tcgttttacg gtgtgagatt
      901 aggaatactt cgcaatttaa agaatggatt tttaggagga aattggtaac atattaggtc
      961 atttctacct ttgtctgggg ctggaaatat ggtataatga gaagatagat ttccattagg
     1021 aggaaagtaa gaatgaagat ttctgaagct gaagtccgtc acgttgccaa gctgtctaag
     1081 ctggaatttt cggatcaaga aacagcggaa tttgcgacaa gtttgagcaa gattgtcgat
     1141 atggttgagt tgctcaatga agtggatacg acaggtgttg cggtgacaac gaccatggct
     1201 gaccgtaaga atgtcttgcg agcagatatt gcccaaaaag gtgagagccg tgaggagctc
     1261 tttaaaaatg tgcctgagac ccaagataac tttatcaagg taccagctat tctagacggg
     1321 ggaggagatg cctaatgacc tttaacaata aaaccattga tgaattgcat gacctccttg
     1381 tcaaaaagga gatttcggct cttgagttga ccaaggcaac tttggaagac attaagagcc
     1441 gtgagggagc agtggatgct ttcttgacta tcacagaaga tgcggccttg gcgcaggctg
     1501 ctgcccttga tgaaaaaggg attgatgcgg acaatgttat ggcagggatt cctttggcag
     1561 tcaaggacaa tatctctact aaggggattt tgaccacggc agcttcaaaa atgctctata
     1621 actacgagcc gattttcgat gcgacatcgg tttcccaagc ctatgccaag gatatgattg
     1681 ttgttggtaa gaccaacatg gatgagtttg ctatgggtgg ttctaatgag aactcagcct
     1741 tcaaaccgac caaaaatgct tgggaccaga caaaagttcc tggtggttct tcaggtggct
     1801 cagctgctgc agttgcggct ggtcaagtcc gtttatcact cggttctgac acaggtggct
     1861 ctatccgtca accagcagcc tttaatggta tcgtcggtat gaaaccgacc tatggaacgg
     1921 tgtcacgttt tggtttaatt gcctttggtt catctcttga ccagatcggt ccattctcac
     1981 agacggttaa ggaaaatgcc cagttgctca atgtcatctc tggtcatgat gtcaaggatg
     2041 caacatcaac catcaatgaa attgcagact ttactagcaa gattggtcag gacatcaagg
     2101 gtatgaagat tgctctgcca aaagaataca tgggagaagg gattgatccg caggtgaagg
     2161 aaactattct caaggcggct aagcacttgg aaagcttggg agcaatcatt gaagaagtca
     2221 gcctgccaca ttctaagtat ggggttgctg tttactacat cattgcttca tcagaggcgt
     2281 cttctaactt gcaacgtttt gacggtatcc gttatggttt ccgtgcagaa gatgcgacca
     2341 acttggaaga aatctatgtg aaaacccgta gccaaggttt tggtgaggaa gtcaaacgtc
     2401 gtattatgtt aggtacattt agcttgtcat ctggttacta cgatgcctac ttcaagaagg
     2461 ctggtcaggt acggaccttg attatccagg attttgaaaa agtctttgca gactatgact
     2521 tgattttggg gccaacagct ccgacggttg cctttggttt ggacacgctc aaccatgacc
     2581 ctgtggctat gtacttggcg gacttgttaa caattcctgt aaacttagca ggtcttcctg
     2641 gtctttctat tcctgctggt tttgttgaag gcttgccagt cggtttgcag ttgattggtc
     2701 caaaatattc agaagagacc atttaccaag tggctgctgc ctttgaagcg acaacagact
     2761 accacaagca acaaccagtg atttttggag gtgctaacta atgaactttg aaacgattat
     2821 tggtctagaa gtccatgtgg agttgaatac caactcgaaa attttctcac cttcatctgc
     2881 tcattttggt gaggatccaa atgccaatac caacgtgatt gactggtctt tcccaggtgt
     2941 ccttcctgtt cttaataagg gcgttgtgga cgcaggaatc aaggctgcct tggctttgaa
     3001 catggacatt cataaggaca tgcactttga ccgtaagaac tatttctatc ctgataaccc
     3061 taaagcctat cagatttccc agtttgacga gccgattggc tacaatggct ggattgagat
     3121 tgagttagaa gatggttcga ccaagaaaat ccgtatcgag cgtgcccact tggaagagga
     3181 tgctggtaag aatacccacg ggacagacgg ttattcttat gtggacctca accgtcaagg
     3241 agtgccactg attgagattg tatcagaagc cgatatgcgt tcgcctgagg aggcctatgc
     3301 ctacttgact gcgctcaagg aaattatcca atacactggt atttcagacg tgaagatgga
     3361 agagggttct atgcgcgtgg atgccaacat ctctcttcgt ccctatggtc aagaaaaatt
     3421 tggtaccaag actgagttga aaaacctcaa ctccttcaac tatgttcgca agggcttgca
     3481 acacgaagta gaacgtcagg ccaaaatctt gcgttcaggt ggtcaaatcc agcaggaaac
     3541 gcgtcgttac gatgaatcta ctggtgaaac cattctcatg cgtgtcaaag aaggttcagc
     3601 ggactaccgt tacttcccag agccagacct accgctctac gagattgatg atagctggat
     3661 tgatgaagtg cgtgcagaat tgccagtctt tccaaaggct cgccgtgctc actatgtgga
     3721 aaacttgggc ttgactacct acgatgctgg tcagttgaca tcaaccaagg ctctgtctga
     3781 cttctttgaa gcagcagtgg cagcaggtgg cgatgctaag caggtatcca actggttgca
     3841 gggtgaggtg gctcagttcc tcaatgctga aggtaagact attgagcaaa tcgctttgac
     3901 accagaaaac ttggttgaga tgattgcctt gattgcggat ggcactattt catccaaaat
     3961 tgctaagaaa gtctttgttc acttggctaa ggaaggcggc tctgctaagg cttatgttga
     4021 gaaggctggt ttggtacaga tttcagaccc tgcggtcttg attccgatta tccaccaagt
     4081 ctttgcggat aacgaagcgg ctgtagctga cttcaagtca ggtaaacgca atgcagacaa
     4141 ggcctttact ggtttcttga tgaaagcgac taagggacaa gctaacccgc aagttgcaca
     4201 acaactcttg gctcaggaat tggctaagtt gttggattaa attgaataga agaaaaccgc
     4261 taggattgaa tcttagcggt ttttactgtt acttgtaaac taggtgcttc tatcttattt
     4321 ttatgctata ttttaaaaac ggtataaagt attagaaggt agcgcgggta ttgactgtta
     4381 aaggatagtt agctaaaatg aaaaaatatc atcactatag aagagttgta attttttggg
     4441 ggttctcaaa gatttcggga atactgcact attccaataa tttttaggaa tgagtatgtt
     4501 atactagatg ggtagaaaag tgaagacggt ggctcttgat tttctgaaag tgaggtgatg
     4561 cctatgggca attcatcaaa atctgacgga aaggaggagc atcttttgac agcttttgaa
     4621 gttgtgcaaa ctattctagg ctttggtagt tttactattg cattgattgg cttgtgctat
     4681 aaaatcttca aagataatga caaaaagaaa taaccgtcaa actttggaca gtaacggtta
     4741 tttctaaata atctaaactg agccaccgtc tttttaacgg ttctacattt ggggctggat
     4801 tgccgtccag ctcctttttc tatatccatt ataccagatt acttgtaaaa tgcaaataat
     4861 ctgttcatgt tggctatgag catgtgctat gcaaatttta gtacaagttt tacaagaagt
     4921 ttaacatctt taatacttat tgaaaagccg tactcggtat caaaccactt gtataaaatt
     4981 caatataagt aacggaatga tggaagattt ccttatcaat aagaactctc gcgtattact
     5041 agctgggtac ccaacttaat cttacgggga tggtggggct gcggactcgc aatcacacgg
     5101 tccagcagtt gcatagcttc ctggcccatt tcctcggtga agacgctgat ggaagacagg
     5161 gctggataga cctggcgggt gatggctgtg tcgttaaagg tgatgagttg gactctaccg
     5221 ggcactgcga tttgacgctc ttgtaaagca cgcagggctc cgactgccag ggtatcattt
     5281 gccatgaaaa aggcaggggg tagctggtcg cctaggtcct caatagcctg gctcatcagc
     5341 tcatatcctg attgggtgga aaattttcct tggtagatgt agtcttcttg gagcatgccc
     5401 aaggtgtcta ggtagtcacg aaaggcagtc aggcggggat ctgttggcag ttggtagccg
     5461 tctgtggttt cttcctgtcc aactaggagg ccaatgtctg tcagaccttg agaacggaag
     5521 tggtcgataa cggtctgtac agagtgttca aagtcggtcg tgatacagga gaatccctcc
     5581 gtcagtgtat cagagtccac aaaaatgagc ttggaagaca agttggttag ctctgctatt
     5641 tgcccagaag aaaacttacc aaccgcgatg atgccgtcaa cctcttggag gaggggatgg
     5701 gtcaggtcgt taaaggagcg gatgatttgg tagcccagga ggctggcggt ttgctcgatg
     5761 ctagctcgaa tagaatagta gtagaggtca gccagctctt cgctctcggt gtaccactga
     5821 acaataccga tggtgccttt ttgttgggga gcttgttttt tgaggtgttt ggtgtagccc
     5881 aggtcctgtg ccaagttgaa aatgcggtcg cgggtttctt ggctgacgga tagggtcagg
     5941 tctcccttga gaacgcggga aacggtggca gaggaaaggt gggcttgttt tgctatgtct
     6001 ttgattgtaa ccatgttctt ctcctgttta tttgtctcta gtatagcata aaaaacaaaa
     6061 ttagtaaaaa tttagtaaaa atattgactt ttaaattgtt gagttgtaca ataaaagaaa
     6121 acgattacaa aatctaggag gttcttatga acacagaaca actcaagcag gcctttctcg
     6181 atgtgtttgg tcaagaggca gatgcgactt tcttctcacc aggtcggatt aatttgattg
     6241 gtgagcacac ggactacaat ggtggtcatg ttttccctgc ggctattacc ttggggacct
     6301 acggggctgc tcgcaaacgt gacgaccagc ttttgcgttt ttattctgct aactttgaag
     6361 aacttggaat tatcgaagtg gatttgaaca atctggtctt tgataaggca gataactgga
     6421 ccaactatgc caagggtgtt ctcaaattct tgcaagaagc agggcatgcc attgatacag
     6481 ggatggaagt ctttgtttac ggtaacattc caaatggttc aggcttgtca tcatcagctt
     6541 ccttggaact cttgattggc attatcgcag aagagttgta tggacttgaa ttgactcgac
     6601 ttgatttggt gaaaattggg aaacaaacgg aaaatcactt tatcggtgtc aattctggga
     6661 tcatggacca gtttgcgatc ggtatgggag cagataatcg ggcgatttac cttgatacca
     6721 ataccttgga atatgacttg gtaccgctgg atttagggga ccatgtgatt gtcattatga
     6781 acaccaataa acgccgtgaa ttggcagatt ctaagtacaa tgagcgtcgt gcagaatgtg
     6841 aaaaagctgt ggaagaattg aatgcagtct tgaatattca aactctaggt gaattggatg
     6901 agtggacctt tgaccaatat agttatttga ttaaagatga gaaccgtatc aagcgtgctc
     6961 gccatgctgt cttagaaaat caacggacct tgcaagctcg taaggcttta gaagaaggag
     7021 atttggctac ctttggtcgt ctggtcaatg cttcccatgt ttctttggag catgattatg
     7081 aagtgacagg tctagaattg gataccttgg ctcacacagc ttgggagcaa gaaggagttc
     7141 ttggtgctcg gatgacagga gctggcttcg gcggctgtgg tattgccatt gtccacaagg
     7201 ataaggttga agccttcacg gaaaatgtcg gcaagaccta tactgaagtg gttggctatg
     7261 aaccaagctt ctatgtagcg gagattgctg gaggctctcg cgttttatct cgaaaataga
     7321 ttggagaaat gatggctgga ttggtggatc gttttgttga gcaggttatt gccaacagtg
     7381 attttgagga aatggatgct ctttacctgc acaatcgggt cttggctttg gtgggagacc
     7441 aggttctgac tgttcaaaca gatttagagg acttgattga attaaaagat gaactattgg
     7501 ctcatggagt tcgaactggt tttgtgggtg aattgctgga agagcaggac atggttgggg
     7561 cttgtttgat ggatttgatg acaccaagtc caagtcaggt caatcgtgat ttttggcaga
     7621 cctatcagga cagtccagag caagcgattg gtgacttcta tgaattgagc aagcgcaatg
     7681 actatatcaa gatggctgcg attgcgaaaa atatctatta tcaagtttcg acagagtatg
     7741 gggatttgga aatcacaatc aatctgtcta aacctgagaa ggatcccaag tctattgcag
     7801 ctgctacgaa agctgaagca agcaattatc ccaaatgcct actctgtatg gaaaatgagg
     7861 gctatcaggg tcggattaac catccagcac gcgccaacca ccgcattatt cgcttggagc
     7921 ttggacagga aaagtggggc ttccagtatt cgccctatgc ttactacaat gaacatgcta
     7981 ttttcctaaa tcaggaacat gtgccgatgg tcattagtcc gcgaacattt gagcagctct
     8041 tggacttgtt ggatttgttg ccaggctatt ttgtcggttc caactctgat ttacctatct
     8101 cgggtggctc catcttgacc cacaatcact atcagggtgg gcggcacagt tttgccatgg
     8161 aaaaggcgcc gattgagcgc cagctggtct tcgacggctt tgagtccgtt tcggcaggaa
     8221 ttgtcaaatg gcctatgtcg gtgattcgct tgagttcggc agataagcca tcgcttcttg
     8281 gtttagcgac taagattttg gaaaaatggc ggagctactc agatgataac gttcagataa
     8341 aggctgagac ggatggaact cctcatcata ccatcacccc gattgctcgg aaacgaggag
     8401 atttgtacga gctggatttg gttctccgcg acaatcagac ctcagaagag tttccagatg
     8461 gcatctacca tccacatcca gatgtgcaac atataaagaa agaaaacatc ggcttgattg
     8521 aggtaatggg cttggcgatt ttacctccac gcttgaaggc cgaattggct gaagtagaaa
     8581 aattcttact gggtcaagat agtcaggtgg ctgactatca tcagccttgg gcggaaagcc
     8641 tgaaaacagc tcacccagat gtgacagagg aaactgtcga acaagttgtt cgtgagtcag
     8701 tgggacaaat ttttgcgcgt gtattggaag atgcaggggt ctacaaacga acaccagaag
     8761 gacaggcagc ctttctacga ttcgtagaat ttgtaggttt agcaacataa ttgcaagaaa
     8821 gagtgggacg g
//
LOCUS       DASGCC010000084         8752 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.084, whole genome shotgun sequence.
ACCESSION   DASGCC010000084 DASGCC010000000
VERSION     DASGCC010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8752
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.084"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(30..1511)
                     /gene="guaB"
                     /locus_tag="U1404_001387"
     CDS             complement(30..1511)
                     /gene="guaB"
                     /locus_tag="U1404_001387"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM5348337.1"
                     /translation="MSNWDTKFLKKGFTFDDVLLIPAESHVLPHDIDLKTQLAPNLTL
                     NLPIISAAMDTVTDSKMAIAMARAGGLGVIHKNMSIAEQADEVRKVKRSENGVIIDPF
                     FLTPEHTIAEAEKLMATYRISGVPIVETLENRKLVGIITNRDMRFISDYSQPISTNMT
                     SDALVTAPVGTDLATAEAILHKHRIEKLPLVDENGRLSGLITIKDIEKVIEFPNAAKD
                     EFGRLLVAGAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIKEIREHFPTR
                     TLIAGNIATAEGARALYEAGVDVVKVGIGPGSICTTRVIAGVGVPQVTAIYDAAGVAR
                     EYGKTIIADGGIKYSGDIVKALAAGGHAVMLGSMFAGTDEAPGETEIFQGRKFKTYRG
                     MGSIAAMKQGSKDRYFQASVNEANKLVPEGIEGRVAYKGSVADMIFQMVGGLRSGMGY
                     VGAGNLTELHENAQFIEMSGAGLKESHPHDVQITNEAPNYSVQ"
     gene            complement(1743..2768)
                     /gene="trpS"
                     /locus_tag="U1404_001388"
     CDS             complement(1743..2768)
                     /gene="trpS"
                     /locus_tag="U1404_001388"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEM5348338.1"
                     /translation="MSKPIILTGDRPTGKLHIGHYVGSLKNRVLLQDAGQHELFVFLA
                     DQQALTDHAKEPQKIVESVGNVALDYLAAGLDPAKTTIFIQSQIPELAELTMYYMNLV
                     SVARLERNPTVKTEIAQKGFGEGIPAGFLVYPVSQAADITAFKANFVPVGNDQKPMIE
                     QTREIVRSFNHAYQTDILVEPEGIYPENEAAGRLPGLDGNAKMSKSLGNGIYLADDMD
                     TLKKKVMSMYTDPNHIRVEDPGKIEGNMVFHYLDVFGREEDKAEIEAMKEHYQRGGLG
                     DVKTKRYLLDILERELGPIRERRIEFAQDMGQVYAMLEAGSQKARQVAATTLDQVKSA
                     MGINYFK"
     misc_binding    complement(2815..3021)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3123..3995
                     /locus_tag="U1404_001389"
     CDS             3123..3995
                     /locus_tag="U1404_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5348339.1"
                     /translation="MKERIKDFISVTLGSIVMAIGFNSFFLENNIVSGGVGGLAIALN
                     ALLGWSPSDFVLYCNIPLLIICWFFLGKSVFIKTVYGAIIYPLCIKLTAGLPNLTENP
                     LLAAIFGGIILGFGLGLVFLGNSSTGGTGILIQFIHKYTPLSLGLTMAIIDGIIVGLG
                     FVAFDTDTVMYSIIALMTITYIVNRMMSGTQSSRNVMIISQKSEEIKDYITKVADRGV
                     TELPIIGGFTGVDKRMLMTTISIPEMQKLETAVLEIDETAFMVVMPASQVRGRGFSLQ
                     KDHKHYDEDILIPM"
     gene            4060..5682
                     /locus_tag="U1404_001390"
     CDS             4060..5682
                     /locus_tag="U1404_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5348340.1"
                     /translation="MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFL
                     KILAGDIEPSTGHISLGPDERLSVLRQNHFDYEDERVIDVVIMGNEQLYSIMKEKDAI
                     YMKEDFSDEDGVRAAELEGEFAELGGWEAESEASQLLQNLNISEDLHYQNMSELTNGE
                     KVKVLLAKALFGKPDVLLLDEPTNGLDIQSINWLEDFLIDFENTVIVVSHDRHFLNKV
                     CTHMADLDFGKIKIFVGNYDFWKQSSELAAKLQADRNAKAEEKIKELQEFVARFSANA
                     SKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKSEREIGNDLLTVENLKVVIDGETI
                     LDNISFILRPGDKTALIGQNDIQTTALIRALMGDIEYEGTIKWGVTTSQSYLPKDNTR
                     DFDTNESILDWLRQFASKEEDDNTFLRGFLGRMLFSGDEVNKPVNVLSGGEKVRVMLS
                     KLMLLKSNVLVLDDPTNHLDLESISSLNDGLKAFKESIIFASHDHEFIQTLANHIIVI
                     SKNGVIDRIDETYDEFLENAEVQAKVQELWKA"
     gene            5989..8568
                     /locus_tag="U1404_001391"
     CDS             5989..8568
                     /locus_tag="U1404_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM5348341.1"
                     /translation="MKKIFTKTSIYYLLSFLIPLTIISIVLAFQGIWWGSDTTILASD
                     GFHQYVIFNQTLRNTLHGDGSLFYTFSSGLGLNFYALSSYYLGSFLSPIVFFFDLQSM
                     PDAIYLVTIVKFGLTGLSTYFSLKGIHKNLKEEWALLLATSFSLMSFSTSQLEINNWL
                     DVFILLPLVLLGLHRLLKKQGPILYYITLTCLFIQNYYFGYMVAIFLTLWTLVQLSWI
                     DSQRIKRFIKFTIVSILSALSSMFMLLPTYLDLKTHGETFTKIVNLKTEDSWYLDFFA
                     KNLVGSFDTTKFGSIPMISVGLVPLILALLFFTLKEIKPTIKLSYALFFTFIISSFYL
                     QPLNLFWQGMHAPNMFLYRYAWALSITVIYLAAETLVRLRQVSIKNFTLIVSFLLICF
                     TSTFIFRDHYEFLTDVNFLLTLEFLIAYFILFVAMIRYKSSLKWINIVLLFFTFLELG
                     LHSHYQVQGISDEWHFPSRSNYEEKLTDIDSIVKSTKTTTDSFYRIERLLPQTGNDSM
                     KFNYNGISQFSSIRNRASSSALDKLGFRSDGTNLNLRYQNNTIIADSLFGVKYNLATT
                     DPNKFGFTLNQSQSTINLYENSFNLGLALLTEGIYKDVNFTNLTLDNQTNFLNQLTGL
                     SQKYYHTLSDVISQNTVELSNRMTVNKVDNEDAAKATFLVNIPANSQVYLNLPNLTFS
                     NENQKKVVITVNNQSSEFTLDNAFSFFNVGSFTTDVQVQVDVYFPENNQVSFDKPQFY
                     RLDLLAFQQAISILQEKQVVTKTDGNKVTVDFVTDKEASLLLTLPYDKGWNATIDGKP
                     IKIQKVQEGFMKVDVSPGQTKLVLTFVPNGFYLGLLISFGAVFVFFSYQFIGYYYSKN
                     REY"
     gene            complement(8637..8709)
                     /locus_tag="U1404_001392"
     tRNA            complement(8637..8709)
                     /locus_tag="U1404_001392"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8674..8676),aa:Asn,seq:gtt)
BASE COUNT         2587 a         1844 c         1559 g         2762 t
ORIGIN      
        1 gaccctgtca agagggtctt gtttttgttt tactgaactg aatagtttgg agcttcgttt
       61 gtgatttgaa catcgtgtgg atggctttct ttcaaaccag cacctgacat ttcgatgaat
      121 tgtgcatttt catgcaattc agtcaagtta ccagcaccta catagcccat acctgagcga
      181 agtccaccaa ccatttggaa aatcatatct gcaactgaac ctttataggc tacacgtcct
      241 tcaattcctt ctggaacaag tttgttggct tcattgacag atgcttggaa gtaacggtct
      301 tttgaacctt gtttcatggc agcgatagag cccataccgc gataggtctt gaacttacga
      361 ccttggaaga tttctgtctc acctggtgct tcatccgttc ctgcaaacat agaaccaagc
      421 ataacggcat gaccacccgc tgcaagtgcc ttgacaatat ctccagaata tttgatacca
      481 ccatcagcga taatcgtttt accatattca cgcgcaacac ctgccgcatc gtaaatagcc
      541 gtcacctgag gaactcctac acctgcgatt acgcgagtcg tacagatgga acctggacca
      601 ataccaactt taacgacatc aacccctgct tcataaaggg cacgtgcacc ctctgcagtc
      661 gcaatgttgc cggcaatcaa ggtacgagtt gggaagtgtt cgcggatttc tttgatctta
      721 cgcaaaacac cagctgaatg accatgagct gtatcgatga caatcgcatc tgcacctgct
      781 tcaaagagag cttctgcacg ttcaaaagta tcagatgtaa caccaacagc acccgcaacc
      841 aagagacgac caaattcatc cttcgcagca tttgggaact caatcacttt ctcaatatct
      901 ttgatagtaa tcaagcctga caaacgacca ttttcatcaa ccaatggcaa tttttcaata
      961 cgatgcttgt gaagaatagc ctccgcagtc gcaagatctg ttccaactgg cgctgttacc
     1021 aaagcatcgc tggtcatgtt ggtcgaaatt ggctgtgagt aatctgaaat gaaacgcata
     1081 tcgcgattgg tgataatacc gaccaactta cgattttcta atgtttcaac gattggcaca
     1141 ccggaaatac gataagtagc catcaatttc tcagcttcag caatggtgtg ttctggtgtt
     1201 aagaagaatg gatcgataat gactccattt tcagaacgtt ttaccttgcg cacctcatca
     1261 gcctgctccg cgatagacat gttcttatgg atgacgccca aaccacccgc acgcgccata
     1321 gcgatagcca ttttgctatc tgttactgta tccatagcag cagaaataat cggaagatta
     1381 agggtcaaat ttggtgctaa ttgtgttttt aaatcaatat catgtggtaa tacatgactt
     1441 tcagccggaa taagtaatac atcgtcgaaa gtaaagcctt ttttcaaaaa tttagtgtcc
     1501 cagtttgaca ttttcttcct cttttcttat ttaatatgta gcatgattgc tatttgtatt
     1561 ttaattatga taacattttg aaatcatttg tcaatcatta ttcgctttaa tatcatcatt
     1621 actaaaaatt cagaaaattc tattcagttt tatatataaa attcgaacgt ttgttttttg
     1681 ctacgtcgta aaataaatga aaaaagcaac attttctcaa cattgctctt tcattgttaa
     1741 ccttatttaa aatagttaat tcccatagca gatttcactt ggtcaagagt tgtcgcagca
     1801 acttggcgag ctttttggct acctgcctcc aacattgcat agacctgtcc catatcctgt
     1861 gcaaattcga tacgacgctc acggattggt cctaattctc tctctaaaat gtccagcaaa
     1921 taacgtttgg tcttcacatc gcccaaacca ccacgttgat agtgctcctt catagcctca
     1981 atctcagcct tatcttcttc gcgaccaaaa acgtcaagat agtggaaaac catgtttcct
     2041 tcaatcttac ctgggtcttc aacacggatg tggttgggat cagtgtacat ggacatgact
     2101 ttcttcttga gtgtatccat gtcatctgcc agataaatac catttccaag tgacttagac
     2161 atcttggcat tgccgtccaa acctggcaag cgaccagctg cctcattttc aggataaatg
     2221 ccctccggct ctaccaaaat atcagtctgg taagcatggt taaagctacg aacgatttca
     2281 cgagtctgct caatcatagg tttctggtca tttcctactg gaacaaagtt tgccttgaag
     2341 gctgtaatat ccgccgcttg tgacacagga tagaccaaga aaccagctgg aattccttcg
     2401 ccaaatccct tctgagcaat ctcggttttt acagtcggat tgcgttctag acgtgcaaca
     2461 gataccaagt tcatgtagta catggtcaac tctgccaatt caggaatttg actctggatg
     2521 aaaatcgttg tcttagctgg atcaagtcct gccgctagat aatctagtgc tacgtttcca
     2581 acggattcaa caatcttttg cggttccttt gcatgatctg tcaacgcttg ttggtctgct
     2641 aaaaagacaa aaagttcatg ttgacctgca tcctgtaata aaacacgatt tttcaacgaa
     2701 ccaacataat gtccaatatg taatttgcct gttggacggt ctcctgttag gataatcggt
     2761 ttactcataa aatgttctcc ttttacataa taaaagccca cgcacagaaa actgtgcgag
     2821 ggcgtcaagg acacggtgcc acctcactta taagcattaa ataagcttac atctttttgc
     2881 acataaggcc tgctagccga atccttattt attcagattc tattcactca gtccattcat
     2941 aagcgactct tgtttgttca caccaaccac aaactctcta aaaattatcc acttactact
     3001 cttctgattg attcctatta taaccgcaaa aaattagaaa gtcaagctga caaagccttg
     3061 acgatactgt ctaaattagg gataatagaa attgctttta taacactaac caaggagaat
     3121 atatgaaaga acgtataaag gactttatct ctgtcacact cggatcaatt gtcatggcca
     3181 ttggatttaa cagttttttt ctagagaata atatcgtatc tggtggtgtc ggaggtttag
     3241 caatcgcact caatgctctt ctggggtgga gtccgtctga ttttgtcctc tactgtaaca
     3301 tccctttatt aatcatctgt tggtttttct taggaaaatc tgtatttatc aaaactgtct
     3361 atggagctat tatctaccct ctttgcatca agttgacagc aggtttaccc aacttgacag
     3421 aaaatcctct cctagctgct attttcggtg gaattatcct aggttttgga cttgggcttg
     3481 tcttccttgg aaattcttct actggtggaa caggtattct tattcaattt attcacaagt
     3541 acaccccttt atcattaggt ctgacaatgg ctattattga tggtattatc gttggtcttg
     3601 gatttgttgc cttcgatact gatactgtta tgtactctat tattgcccta atgaccatta
     3661 cttatattgt caaccgcatg atgtctggta cccaatcttc tcgaaatgtc atgattattt
     3721 ctcaaaaatc agaagaaatt aaagactata ttactaaagt tgctgatcgc ggtgtgacag
     3781 aacttccaat tattggtggc tttacagggg ttgacaagcg catgttgatg actaccatct
     3841 ctattccaga aatgcagaaa ctggagacag cggtattaga aattgatgaa actgccttta
     3901 tggttgttat gcctgcgagt caggtgcgtg gacgtggctt cagtcttcaa aaagaccata
     3961 aacattatga tgaagatatt ttgattccaa tgtaattcat tgaaaattca agttctttct
     4021 agtacaataa aactaataga cagaaataga ggagaaacta tgcttacagt atcagacgtg
     4081 tcgcttcgct ttagcgaccg caaattattt gacgatgtca atatcaaatt tacagcagga
     4141 aatacctacg gtttgattgg tgccaatggt gctggcaaat ctacattttt gaaaattctt
     4201 gctggtgaca tcgagccatc aacaggtcat atttcacttg gaccagacga acgcctttct
     4261 gtactacgtc agaaccattt cgactatgaa gatgagcgcg tgattgacgt tgttatcatg
     4321 ggaaatgagc aactttacag catcatgaaa gaaaaagatg ctatttacat gaaggaagat
     4381 ttttctgatg aagatggtgt tcgtgctgct gaattagaag gtgagtttgc tgaacttggt
     4441 ggctgggaag ctgaaagtga agcttctcaa ttgctccaaa acctcaacat ttcagaagac
     4501 ctccactacc aaaacatgag cgaattgacc aacggtgaga aggtcaaggt cctcttggcc
     4561 aaggccctct ttggtaagcc tgatgttctt cttttggacg agccaaccaa cggtctggac
     4621 atccaatcta tcaactggct cgaagatttc ttgattgact ttgaaaatac ggttatcgtc
     4681 gtgtcacacg accgccactt cttaaacaaa gtatgtaccc atatggccga ccttgacttc
     4741 ggtaaaatca agattttcgt tggtaactat gacttctgga aacaatccag tgaactagca
     4801 gctaaactac aagctgaccg taatgccaaa gcagaagaaa aaatcaaaga actacaagaa
     4861 ttcgttgccc gtttctctgc taatgcctct aagtctaagc aagctacttc acggaaaaag
     4921 atgctggaca aaatcgagtt ggaggaaatt attccttcta gccgtaagta tccatttatc
     4981 aacttcaaat cagaacgtga aattggtaat gacctcctaa cagttgaaaa cttgaaagtt
     5041 gtcatcgatg gtgaaacgat tcttgacaat atcagcttta tcctgcgtcc aggtgacaag
     5101 actgctctta ttggtcaaaa cgacatccaa acaactgctc tcattcgtgc tcttatgggc
     5161 gatattgaat atgaaggtac tatcaagtgg ggtgtcacta ctagtcaatc ctacttacca
     5221 aaagacaata ctcgtgactt tgatacaaac gaatctatcc ttgattggct ccgtcaattt
     5281 gccagcaagg aagaagatga caataccttc ttgcgcggtt tcttgggacg tatgctcttc
     5341 tcgggtgatg aggttaacaa acctgtaaac gtcttgtcag ggggcgaaaa agtgcgcgtg
     5401 atgttgtcaa aactcatgct cctcaagtca aatgtcttgg tcttagatga tccaaccaac
     5461 cacttggact tggaatcaat ttccagtctg aatgatggtt tgaaagcttt taaagagtcc
     5521 atcatctttg ccagccacga ccacgaattt attcaaactt tagcaaacca tatcatcgtc
     5581 atttctaaaa acggtgttat cgaccgaatc gacgaaactt atgatgaatt cttggaaaat
     5641 gctgaagtac aagcaaaagt acaagaactt tggaaagcat aataaaaaga ggctgggact
     5701 tttgcccagc ctctcttctc agagttcgtg tcaacatctc agcgcagtgg ttgattgcca
     5761 gatttgttcg tgtttcacac tccaaatctg gccattacga ctgttgcgaa caaagttcgc
     5821 cttatctcca acctcaaact gtctcccaga cagtttgagc tgtgcggggg tgggagtgaa
     5881 acagtctggg aatagactgt ttcagctcaa caactagaaa taaagacttg ttgacgaact
     5941 cttttttgac cggtcaagtt ctttcccact tccttttctt ttaaatctat gaaaaaaata
     6001 tttacaaaaa catccattta ttatctctta tctttcctta ttccgctgac tattatttct
     6061 atcgtcttag catttcaagg aatctggtgg ggaagtgata caacaatatt ggccagtgat
     6121 ggtttccatc agtatgttat ttttaatcaa acattacgaa atactttaca cggagacggc
     6181 tctttatttt acacattttc aagtggttta ggactcaatt tttatgctct atcctcctat
     6241 tacctaggtt cattcctatc tccaattgtc tttttctttg atttacaatc catgcctgac
     6301 gctatctacc ttgtcactat tgtcaaattt ggattgactg ggttgtcaac ttatttcagt
     6361 ctaaagggta tccataaaaa tttgaaagaa gaatgggcac tattactcgc tactagtttt
     6421 tctctgatga gttttagtac aagtcaatta gaaataaaca actggctaga cgtttttata
     6481 cttctcccac tcgttcttct tggattgcat cgattattaa aaaaacaggg tccgattctc
     6541 tactacataa cattaacatg cttgtttatc caaaactatt acttcggtta tatggtggct
     6601 attttcctaa cattatggac attggttcaa ttatcatgga tagatagtca gagaatcaaa
     6661 agatttatca agtttacaat agtgtcaatt ttatctgctc taagcagcat gttcatgttg
     6721 ttaccaacct acttggattt aaaaactcat ggtgagacat ttacaaaaat tgtcaaccta
     6781 aaaaccgaag actcttggta tctggacttc tttgcaaaaa acttagttgg tagctttgat
     6841 acaacaaaat ttggttctat tcccatgatc tctgttggtc tcgttccatt aatactcgct
     6901 ttactattct ttacattaaa agaaataaaa ccaactatca aactctccta tgctctattc
     6961 tttacattca ttatttcaag tttctaccta caaccactca atcttttttg gcaaggtatg
     7021 catgcgccaa acatgttcct ctatcgttat gcatgggctc tatcaataac cgttatctat
     7081 ttagcagcag agacattggt acgactacgt caagtaagta ttaaaaattt tactctgatt
     7141 gtttcatttt tactcatttg ctttacttct acctttattt ttagagatca ttatgagttt
     7201 ctaacggatg taaatttcct actcacacta gaatttctaa tagcctactt cattcttttt
     7261 gtagcaatga ttcgctataa atcatcctta aaatggatta atattgtttt attgttcttc
     7321 actttcttag aacttggatt acatagtcat tatcaagttc aggggatttc tgatgaatgg
     7381 cattttccta gccgatcaaa ctatgaagaa aaattgacag atattgacag tattgtaaag
     7441 tctacaaaga ctacaactga ttcattttat cgtatagaac gtctattacc acaaactggc
     7501 aatgatagca tgaaattcaa ttacaacggt atttctcaat tctcctccat tcgaaatcgt
     7561 gcttccagct cagcactaga taagctcggt ttccgttcag acggtaccaa tttgaatctt
     7621 cgttatcaga ataatacaat tattgctgat agcctattcg gagtcaaata taatttagct
     7681 actacggacc caaataagtt tggtttcaca ctgaatcaga gtcagtctac tattaatctt
     7741 tacgaaaata gttttaatct agggttagcc ctattgactg aggggattta caaagatgtc
     7801 aattttacaa atctgactct cgataatcaa acaaatttcc tcaatcaact aacagggcta
     7861 tctcaaaaat actaccacac tttatcagat gttatttcac aaaatacagt tgaactgagc
     7921 aatcgaatga ctgtcaacaa agttgacaat gaggatgctg caaaagcaac tttcttagta
     7981 aatatacctg caaatagcca agtatactta aatttgccaa atttaacatt ctcaaatgaa
     8041 aatcaaaaaa aggttgtcat tactgtcaat aatcagtcaa gtgagtttac attagataat
     8101 gctttctctt tcttcaatgt ggggagcttt actacagatg tacaagttca agtcgatgta
     8161 tattttcctg aaaataatca agtttctttt gataaaccac aattttatcg attggactta
     8221 ttagctttcc aacaggctat ttccattctc caagaaaaac aagtagtaac aaaaactgat
     8281 ggtaataaag taaccgttga ttttgtaacc gataaagaag cctcactcct ccttacttta
     8341 ccctatgata aaggatggaa tgcaaccatt gatggtaaac ctatcaaaat ccaaaaagtg
     8401 caagaaggtt ttatgaaagt ggatgtaagt ccaggtcaaa ctaaactggt tttaaccttt
     8461 gtaccaaatg gtttctatct aggtttactg atttcttttg gtgcagtttt tgtatttttc
     8521 tcctatcaat tcattggata ctattattct aagaaccgag aatactaaac tttctcggtt
     8581 ttttcttgta aaaagcaaaa aaccttgatt tctcaaggtt tcctatgctt tatctactcc
     8641 gccaacaggg ctcgaacctg tgacatcatg attaacagtc atgcgctcta ccaactgagc
     8701 tatggcggaa gaaatagtcc gtacgggatt cgaacccgtg ttaccgccgt ga
//
LOCUS       DASGCC010000085         8540 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.085, whole genome shotgun sequence.
ACCESSION   DASGCC010000085 DASGCC010000000
VERSION     DASGCC010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8540
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.085"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            86..451
                     /locus_tag="U1404_001393"
     CDS             86..451
                     /locus_tag="U1404_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM5348342.1"
                     /translation="MTVKINTKDGQIELTDDVIATVVGGATTEIFGVVGMASKSAIKD
                     NFQALLRKENYSKGVVIKTLEDGRIAVDVYTVMSYGVKISEVSRNIQERVKFNLENQL
                     GISVDAVNVFIQNIKVVGE"
     gene            454..2118
                     /locus_tag="U1404_001394"
     CDS             454..2118
                     /locus_tag="U1404_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEM5348343.1"
                     /translation="MSKITTSLFQEMVQAASTRLNKQAEYVNSLNVFPVPDGDTGTNM
                     GMTITNGAKEVADKSASTVGEVAQILSKGLLMGARGNSGVITSQLFRGFGQSVKGKVE
                     LDGKDLAQAFQHGVEVAYKAVMKPVEGTILTVSRGAATAALKKAEETDDAVEVMRATL
                     DGANRALKKTPEMLPVLKEVGVVDSGGQGLVYIYEGFLSALTGEYIASEDFEATPAVM
                     SEMINAEHHKSVAGHVATEDITFGYCTEIMVALRQGPTYVKDFDYEEFRNYLNDLGDS
                     LLVVNDDEIVKVHVHTEDPGLVMQAGLQYGSLVKVKVDNMREQHEAQVEKVESFQKPA
                     EQKEYAIIAVAAGEGLTEIFKSQGVDYVISGGQTMNPSTEDFVNAIELVNARNVILLP
                     NNKNILMAAQTAAEVAEVAVKVVETKTLPQGFTSLLAFDPSRDLESNFEAMTASLAEV
                     KSGSVTTAVRDTTIDGLEIHENDNLGMVDGKIVVSNPDMMETLVATFDKMLDEDSEIV
                     TIYIGEDGDEELAQTLAEQLEEQFEDVEVEIHQGNQPVYPYLFSVE"
     gene            2183..2659
                     /gene="tsaE"
                     /locus_tag="U1404_001395"
     CDS             2183..2659
                     /gene="tsaE"
                     /locus_tag="U1404_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEM5348344.1"
                     /translation="MTNYWGYGIIKDMYSQNENELIAIGERIGKACKPNQVLVLSGDL
                     GAGKTTLTKGLAKGLKIEQMIKSPTYTIVREYEGTMPLYHLDVYRIGDDPDSIDLDDF
                     LYGGGLTVIEWGELLDVSLFDDYLLIRIEKEGDGRRLTVESHGAQSSDLAKEFQNV"
     gene            2652..3179
                     /locus_tag="U1404_001396"
     CDS             2652..3179
                     /locus_tag="U1404_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348345.1"
                     /translation="MSEKEVYFSEAEPADAAAFIDFMNQVARETDYLVMDETGFRFSV
                     DEMETIFEAGIENPRELCLLAKVGSEVVGAISVKSSKQFRISHIGNIFIAVKKAYWGH
                     GLGTILLEEVLHWAEEMDVLKRLELTVQVRNQAAVHLYQKLGFNIEGTQIRGARTDEG
                     EWLDLYYMGKLIGEV"
     gene            3176..4369
                     /locus_tag="U1404_001397"
     CDS             3176..4369
                     /locus_tag="U1404_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5348346.1"
                     /translation="MTIGKKIFLMSLAIIGLTVGAGLIYGASLLNFSTDAISKTFKQL
                     DGEEKITPIDATEPLTILLMGVDMDQATRGGDWEGGRSDSMILVTVNPKTKETNMMSL
                     TRDIMVEIAEANGESSGTVEKLNHSYSYGQAPMAIATIEKMMDINIDRYIEINMDGLV
                     ELVDAVGGIEVNNTLGFPISISEHEPAYTSIVQPGKQLVNGDQALVYARMRYDDPEGD
                     IGRQRRQREVITAIIKKLLQLDGFTQYKKILTAISNNMRTNIEISPATIPNLLGYKDS
                     ISKLNSYQLRGVDQMVDAIYYQLPTSTHLLEMQNVLKKSIGLEENTDLVTNVKVYEGQ
                     MGLPSPINVYDVYTNLLLLEASPWAESLDPEIGSPSATTTVTTEEQVTDFSTEPVLGD
                     ENGSQ"
     gene            complement(4478..4780)
                     /locus_tag="U1404_001398"
     CDS             complement(4478..4780)
                     /locus_tag="U1404_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5348347.1"
                     /translation="MKLRNIILAVSAATASFLAVTHRDKIAKEVQETKQLLSDIQLNK
                     DNIQEQLAIIQSFQEPLQEMASDLQYKTRVYQQSIAGNLEEIQQILKKYQNENNTP"
     gene            complement(4782..5195)
                     /locus_tag="U1404_001399"
     CDS             complement(4782..5195)
                     /locus_tag="U1404_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM5348348.1"
                     /translation="MSDCIFCKIISGEIPASKVYEDDQVLAFLDITQATKGHTLVVPK
                     KHYRNVLDMDKEAAATLFSVVPTIARQLKEKLGASGLNIVNNNEEAAGQTVFHTHIHL
                     LPRFNNQDGLSIQFKANDPDFPALAQLAQELYLGE"
     gene            5258..5992
                     /locus_tag="U1404_001400"
     CDS             5258..5992
                     /locus_tag="U1404_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348349.1"
                     /translation="MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTI
                     KEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIPETPSLYEELTLKEHLEVVAMAY
                     DLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
                     LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEE
                     LQSAFGMDGASLNEIYLALTQEGVAG"
     gene            5989..7029
                     /locus_tag="U1404_001401"
     CDS             5989..7029
                     /locus_tag="U1404_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348350.1"
                     /translation="MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYR
                     QLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEEADQIFLLTKEKDILQGLEVAAR
                     CTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
                     LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYL
                     RAFLRSGDYLGLTIRLLLLAILSLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQ
                     YITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENTMVVVLLLVGIFLHE
                     IYLPLKLKKLID"
     gene            7079..7873
                     /locus_tag="U1404_001402"
     CDS             7079..7873
                     /locus_tag="U1404_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM5348351.1"
                     /translation="MQFDTSGLQLQSIAGNSGKAFKGLRSDGTPVFVKYEMPPIVSAL
                     AREQITPPVLSANREVGMGHRVEQEWLNGRTLERQDMTSKQIRQILVRMHYSRILLNQ
                     ALQMNYTYMEPQDLVYRWQEEAPTRLGQNSYLQSICQDLLNNLPRFRQEVATFVHGDL
                     HHSNWVETTSGLVYLTDWETACVTDRMLDVAYILTHYIPRQSWEEWLRAYGYKYNSTV
                     LNKVYWYGQLGYLNQIAKHVESYNVLAANKEIYALRQFRQSFYKEV"
     gene            7870..8508
                     /gene="trmB"
                     /locus_tag="U1404_001403"
     CDS             7870..8508
                     /gene="trmB"
                     /locus_tag="U1404_001403"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEM5348352.1"
                     /translation="MRVRNRKGASELLANNPQYVISNPEECKGKWAEIFGNNNPIHIE
                     VGSGKGRFVTGMAAQNPDINYIGIDIQMTVLSYALDRVLEAGLPNIKLLQVDGSSLTN
                     YFAPAEIDQLYLNFSDPWPKKRHEKRRLTYKSFLDTYKEILPEKGEIHFKTDNRGLFE
                     YSLASFSQYGMVLKQVWLDLHADGLEGNVMTEYEEKFSNKGQVIYRVEAQFQ"
BASE COUNT         2447 a         1438 c         2071 g         2584 t
ORIGIN      
        1 aaaatccgat gtaacaagct tgttttttac agaaagcaga aaatgtggta aaatggagtg
       61 ataaaactat ttgaggtaac gaattatgac tgttaaaatc aatactaaag acggccaaat
      121 cgaattgact gatgacgtga ttgccacagt tgttggcggt gctacgactg agattttcgg
      181 tgttgttggg atggctagta agtctgcgat caaggataat tttcaagcac ttttgagaaa
      241 agaaaattat tctaaaggtg ttgtgattaa gaccttggaa gatggtcgca tcgcagtcga
      301 tgtttatact gtgatgagct acggtgtaaa aatcagtgaa gtatctcgca atatccaaga
      361 acgcgttaag ttcaacttgg aaaatcaact aggtatctct gtagatgccg tcaatgtctt
      421 tatccaaaat atcaaagtcg taggagaata attgtgtcta aaattacaac tagtttattt
      481 caagaaatgg tgcaggcagc atcaactcgt ttgaataaac aagccgaata tgtgaactca
      541 ctcaatgttt tcccagttcc agatggggat actgggacca acatggggat gactattacc
      601 aatggtgcta aagaagtagc agataagtct gcttctactg ttggagaagt tgcgcaaatt
      661 ctttctaagg gcttgttgat gggagctcgt ggaaactcag gtgttattac gtcgcaattg
      721 ttccgcggtt ttgggcaatc tgttaaaggc aaggttgaat tggacggtaa ggatttggcg
      781 caagcctttc aacatggtgt agaagtggct tataaagccg ttatgaagcc agttgaaggt
      841 acaattctta ctgtttcgcg tggggcagcc actgccgctt tgaaaaaggc agaagagact
      901 gatgatgcgg ttgaggtcat gcgtgccact cttgacggtg ctaatcgtgc tcttaagaaa
      961 acgccagaga tgcttccagt attgaaggaa gttggcgttg tcgattcagg tggacaaggt
     1021 cttgtttaca tttatgaagg ctttttgtca gctttgacgg gtgagtatat tgcttcggaa
     1081 gattttgagg cgacacctgc tgttatgtct gaaatgatca atgctgagca ccacaagtca
     1141 gttgcaggtc atgtagcgac tgaagatatt acctttggtt actgtacaga aatcatggta
     1201 gctcttcgcc aggggcctac ttatgtcaag gactttgatt atgaagaatt ccgtaactac
     1261 cttaacgacc ttggggattc cctccttgtg gtcaacgatg atgagatcgt taaagtccat
     1321 gtccatacag aagatccagg tttggtcatg caagcgggtc ttcaatatgg tagcttggtc
     1381 aaggtaaaag tggacaatat gcgtgagcaa catgaagctc aggttgagaa agtagaaagt
     1441 ttccaaaaac cggctgaaca aaaagagtat gctattattg cggtagctgc tggggaaggt
     1501 ttgacagaaa tcttcaaatc acaaggcgtt gactatgtga tttcaggtgg tcagaccatg
     1561 aacccatcaa cagaagattt tgtcaatgct attgaattgg tcaatgcccg caatgtcatc
     1621 ttgttgccaa acaacaaaaa tatcttgatg gctgctcaga cggctgctga ggttgcagaa
     1681 gttgcggtta aggttgtgga aactaagacc ctaccacaag gttttactag cttgcttgct
     1741 tttgatccaa gtcgtgattt ggaaagcaac tttgaagcga tgacggcatc tctcgcagag
     1801 gtgaaaagtg gtagcgtgac aactgcggtc cgcgatacaa ccattgacgg tcttgaaatc
     1861 catgagaatg acaaccttgg tatggttgat ggcaagattg tggtttctaa tccagatatg
     1921 atggagacac ttgtggctac ctttgataaa atgttggatg aagacagcga aatcgtgact
     1981 atctacatcg gtgaagatgg tgatgaggaa ctcgctcaaa ctcttgctga acagctagaa
     2041 gaacaatttg aagatgttga ggtcgaaatc catcaaggaa atcaaccagt ctatccatat
     2101 cttttcagcg tagaataaac aaaatcgcag gctctggctt gcgatttttt ctgtcgactt
     2161 gtctacaatt tccagtagac ctatgacaaa ctactggggc tatggtataa ttaaagacat
     2221 gtatagtcag aatgaaaatg aattgattgc cattggtgag agaattggaa aagcctgtaa
     2281 gccaaatcaa gttctagtat tatcagggga tttgggtgct gggaaaacaa ctctgaccaa
     2341 gggtttggcc aagggtttaa aaattgaaca gatgattaag agtcctactt atacgattgt
     2401 gcgagagtat gaggggacca tgccactcta tcacttagat gtttatcgaa ttggagatga
     2461 ccctgactcg attgatttgg atgattttct ctatggagga ggtctaacgg ttatcgagtg
     2521 gggagaatta ctggatgtca gtctatttga tgactatttg ctcattcgta tagagaaaga
     2581 gggagatggt cgacgattga cagtcgaatc tcatggagct caaagtagcg atttagcgaa
     2641 ggagttccaa aatgtctgaa aaagaagtgt attttagtga agctgaacca gctgatgcag
     2701 cagcttttat tgattttatg aatcaagttg ctagagaaac ggattatctg gtcatggatg
     2761 agactggttt tcgatttagt gttgatgaaa tggagaccat cttcgaagca ggaatcgaaa
     2821 atcctcgtga attgtgcctg ttggctaagg ttggttcgga agtcgtcggc gcaatttctg
     2881 ttaagtcctc taagcagttt cgcattagcc atatcggaaa tatttttatt gcagtaaaaa
     2941 aagcctattg gggtcacggt ctagggacga ttttactgga ggaagtattg cattgggcag
     3001 aggaaatgga tgtattgaag cgtttggaat taacggttca ggttcgcaat caggcggcag
     3061 tacatttata tcaaaaacta ggatttaaca ttgaaggaac ccagatacgt ggggctagaa
     3121 cagatgaagg agaatggctt gatctttatt atatgggcaa gttaattggt gaagtatgac
     3181 aattggaaaa aaaatattct taatgtcttt ggctattatt ggtttaacag taggtgctgg
     3241 cttaatatat ggagccagct tgttaaattt ttctacggat gctatttcga aaacatttaa
     3301 gcagttagat ggagaagaaa aaatcactcc gattgatgcg acagagcccc taactatcct
     3361 actgatgggg gtggatatgg accaagcaac ccgtggagga gattgggagg gtggtcgtag
     3421 tgattcgatg attttggtaa ctgttaatcc caagactaag gaaaccaata tgatgagctt
     3481 gactcgtgat attatggttg agattgcaga agcgaatggg gagtcttcag gaacggttga
     3541 aaaactaaat cattcttata gctacggaca ggcaccgatg gccattgcca cgatcgaaaa
     3601 gatgatggat attaacattg accgctatat cgaaataaat atggatggtc tggttgagct
     3661 tgttgatgcg gttggaggta ttgaggtaaa caatactctt ggcttcccta tatccatttc
     3721 ggaacatgag cctgcctaca cctctattgt ccagccgggg aaacagttgg taaatgggga
     3781 tcaggcgctg gtttatgctc ggatgcgcta tgatgatcct gagggggata ttggtcgtca
     3841 gagacgtcaa cgtgaagtta taacggctat tataaaaaaa ctccttcagt tagacggttt
     3901 tacccagtat aagaagattc tgactgccat ttctaataat atgcgaacca acattgagat
     3961 tagtcctgcg acaattccaa atctcttggg gtacaaggac tctatctcca agttgaattc
     4021 ctatcagttg cgcggtgtgg atcaaatggt tgatgcaatc tattatcaat taccaaccag
     4081 tacacatcta ttggaaatgc aaaatgttct gaaaaaatct atcggcttag aagaaaatac
     4141 cgacttagtc acaaacgtga aggtctacga aggacagatg ggattgccaa gtccaataaa
     4201 tgtttatgat gtatatacaa atctcttgct gttagaagca agtccatggg cagaaagctt
     4261 ggatccagaa atagggagtc catcggctac tacgactgtg acaacagaag agcaggtaac
     4321 cgatttttca acagagccag tactcggtga tgaaaacggg tcacaataat gtagtcattc
     4381 agtttttctt ttattacttt gacgagcgag tataaaagcc tataaaaata gaggttgttt
     4441 gcaacctcta tttttatata tttggaaatt ccctatgtca gggagtgtta ttctcattct
     4501 ggtatttttt gagaatctgt tggatttctt ccaagtttcc tgcaatactt tgctgataga
     4561 ctcgagtctt atattgtaag tcagaagcca tttcctgcaa gggttcttga aaactttgga
     4621 taatggcaag ttgttcctga atattgtcct tgttcagttg aatatctgat agaagttgtt
     4681 tggtttcctg tacttcttta gcgattttat cccgatgcgt gactgcaagg aagctggcgg
     4741 tagcggcgct tacggctaaa atgatattac gaagtttcat attattctcc tagatagagc
     4801 tcttgtgcca gttgagccag ggctgggaag tcagggtcgt tggctttaaa ttgaatgctc
     4861 aatccatctt gattgttaaa gcgtggtaag agatggatgt gtgtatgaaa gacggtttgc
     4921 ccagcggcct cctcgttatt attaacgatg tttagaccac tagctccaag tttttctttt
     4981 aactgacgag cgatggttgg cacaacagaa aagagtgtgg ctgcagcttc tttatccatg
     5041 tcaagcacgt ttcggtagtg ttttttaggg acaaccaatg tgtgtccttt tgtggcctga
     5101 gtgatgtcta aaaaggctaa tacttggtca tcttcataga cttttgaagc tggtatttct
     5161 ccagagataa ttttgcaaaa aatacaatcc gacataatgg caacctcttt ctgggatttt
     5221 tgttataata attatatcaa attgtaggaa gaaatgtatg ttagaagtaa aaaatgtaac
     5281 tggaggatat gtcaatatcc cagttttgaa agatgtatct tttaccgttg aggatggtca
     5341 attagttggt ctaattggtt taaatggtgc agggaaatca acgactatta aggaaattat
     5401 cggtcttttg accccctatc aaggacagat tgcaattgac ggcctaactt tgctacaagg
     5461 ggctgaaaat tatcggaaga agattgggtt tatccctgaa acaccaagtt tgtatgaaga
     5521 actaaccctc aaagagcact tggaagtggt agcaatggcc tatgatttat cctgggagca
     5581 agcttgggga cgtgttgagc acttgttaaa actgtttcgc ttggatgaga aattggactg
     5641 gtttcctgtc aatttttcaa agggaatgaa gcagaaggtc atgattattt gtgcttttat
     5701 ggtggagccg agtctattga ttgttgatga gccttttctg ggattagacc ctgtggctat
     5761 ctctgattta atcgctcttt tgggggaaga aaaatctaag ggcacttcaa tcctcatgtc
     5821 cactcacgtt cttgactcag ctgagaaaat gtgcgactct tttgtgattt tacatcaggg
     5881 acaggtccgt gcaactggaa atttggagga gctacaaagc gcatttggta tggatggtgc
     5941 aagtctgaat gaaatttatc tggccttgac gcaagaagga gtggctggat gaaagaattg
     6001 tttcaacaac gccgactaga ttttttaaat cgttgttcca agtatctgcg ctatgttctg
     6061 aatgaccatt ttgttttggt tctcatggtt ttattaggct ttttgagttt gcaataccgt
     6121 caattattgt tgtcgttccc tgagaatccg ttgccgattg tttttgtggt tattgcaatc
     6181 agtctactgg tactagtgtc cggaagaatt gcgacttatc tagaagaagc tgatcaaatc
     6241 ttcctattga ccaaggaaaa agacattctg caaggactcg aggttgcagc cagatgcacg
     6301 gtcttgtttt ggtcctctat acaggtggtg gttcagcttg ttttgttacc aatctatttg
     6361 aaactgggtt taccggtgtg gatgattgta gctggtcttc ttactttgtt ggttttaaaa
     6421 tgtctttttg tcaagcgcca attagtggct tatcagtcac agggagtatt ggactggtct
     6481 aaggctattc aagatgaaca aaaaaggaaa cagtctattt tacgtttctt tgccttattt
     6541 acgacggtta aaggaatcag tacgactgtt aaaccgagaa gctatctcaa tggaatcttg
     6601 cgtcttgtca agtcgagaca gacttggttt tatctctact tacgggcttt cttgcgttca
     6661 ggagactact tgggcttgac gatacgtcta ctgttgttgg cgattttgtc cctatttgcc
     6721 attgaagaat cgtggttatc catcggccta gttttagtct ttcattattt gcttgtcttt
     6781 cagttgttgg ggctttacaa gcattatgat tatcaatata taacacaact gtatcctctg
     6841 gagaaagatt ccaagaaaat tggtcttcag aatttgctta gagtgatttt atatagtcta
     6901 ttactggtgg aattgggctt tgctctgcta ttttctaaag agaatacgat ggtagtcgtc
     6961 ttacttctcg tggggatttt cttgcatgaa atatatttgc ctctaaaatt aaaaaaattg
     7021 attgactaaa tagacgaaaa ttagtaaaat agtaaggaat ttttaaagga ggaaaggcat
     7081 gcagtttgat accagtgggc tacaattaca gtctattgca ggaaatagtg gcaaagcgtt
     7141 taaaggccta cggtcagacg gaacgccagt ctttgtgaag tatgagatgc ctccgatagt
     7201 gtctgctctt gcgcgtgagc aaattacacc acccgttttg tcagcaaatc gtgaagtagg
     7261 aatggggcat cgtgtagagc aggagtggtt gaatggtcgt accttggagc gtcaagatat
     7321 gactagtaaa cagattcgtc aaatactggt gagaatgcac tattctcgca ttttgctcaa
     7381 tcaggctttg cagatgaatt atacctatat ggaacctcag gatttggttt atcgttggca
     7441 agaagaggcg ccaactagat tgggacagaa ttcttatctg caatctatct gtcaagattt
     7501 attgaataat ctaccaagat tccgtcaaga ggtggcaaca tttgttcacg gagatttgca
     7561 tcatagtaac tgggtagaaa cgacgtctgg tttggtgtat ttgacagatt gggagaccgc
     7621 ttgtgtaacg gatcggatgt tggatgttgc ctatattttg acgcattata ttcctcgtca
     7681 gtcctgggaa gagtggcttc gggcttatgg ctacaaatat aacagcacag tattaaataa
     7741 ggtttattgg tatggccagc ttggctatct aaaccaaata gctaagcatg tagaaagcta
     7801 caatgttttg gctgcaaata aagaaattta tgctctacgg caattccgtc agagtttcta
     7861 taaggaagta tgagagttag aaatcgtaag ggagcgagtg agcttctagc aaacaatccc
     7921 cagtatgtta tctccaatcc agaggagtgt aaggggaaat gggcagagat ttttggaaac
     7981 aataatccta tccacataga agttggttct ggtaaaggtc gctttgtcac tggtatggct
     8041 gcgcaaaatc cagatattaa ctatattggt attgatattc agatgaccgt gttaagctat
     8101 gccttggatc gtgtgcttga agctggctta ccaaatataa aattattgca ggtggatggt
     8161 tcgagtttga ccaactattt tgcaccggca gaaatagatc agctttatct gaatttttca
     8221 gatccatggc ctaagaaacg tcatgagaaa cgccgtttga cctacaagtc attcttggat
     8281 acctacaagg aaatcctacc tgagaaggga gaaatccact tcaaaacaga taatcgtggt
     8341 ctgtttgagt atagcctggc tagtttttct caatatggca tggtcttgaa gcaagtttgg
     8401 ctagatttgc atgctgatgg tttggaaggc aacgttatga cagagtatga ggagaaattc
     8461 tcaaacaagg gtcaagttat ctatcgtgtg gaagcacagt ttcaataatt cccttagtgg
     8521 aaaatgagga gaggtctaac
//
LOCUS       DASGCC010000086         8497 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.086, whole genome shotgun sequence.
ACCESSION   DASGCC010000086 DASGCC010000000
VERSION     DASGCC010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8497
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.086"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(182..784)
                     /locus_tag="U1404_001404"
     CDS             complement(182..784)
                     /locus_tag="U1404_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5348353.1"
                     /translation="MRILVAEDQAMLRDALCQLLGFQDAVEAVLQAENGSQAIALLEK
                     EPVDVVLLDIEMPEKTGLDVLEWVRGQALPVKVVIMTTFKRPGYFERAVKADVDAYVL
                     KERSIADLMRTIETVLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIA
                     CQLHLSDGTVRNYMTSILSKLGAENRTAAVRIAQEKGWLV"
     gene            complement(781..1875)
                     /locus_tag="U1404_001405"
     CDS             complement(781..1875)
                     /locus_tag="U1404_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5348354.1"
                     /translation="MIFEKRKVPLMFFVGMIFLYFPLYYAQYTPNPTAVVLATILFAL
                     VYCSLFYTDHKLYSMLAWFYLIGYIAVMSFWGNLQFSLFIFNLSNMLGWYYKENRPTY
                     RTVSYGLLLLAIILWALFGPVPFEMRAFALVIHFFGLALLIFSWIETKRAALQQRLQE
                     QNASINLLLAENERNRIGQDLHDTLGHVFAMLSVKAELVQTLLDHDQIDQAKKEVADL
                     QTLAKDSMQEVRQIVQSLKQHTVAEELQILQQMLDLAGVDLVVLGGEIAEQLSLPVQN
                     KLAMVLRELANNLLKHSQASKCRLVFEKDQQELVVYYEDNGVGFAQLTGQELHTIKDR
                     LVTVKGSLEFISLAKPTRLSIRIPFEEVVE"
     gene            complement(1884..2615)
                     /locus_tag="U1404_001406"
     CDS             complement(1884..2615)
                     /locus_tag="U1404_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348355.1"
                     /translation="MKALVQVEAVKLSRSLGVFLLSIGMPVIFFLIFSSTVQFDDATM
                     QKAFIQSYMLTMTGFSMSGFALFTFPMMLAEDRNNSWLTFIQHSPLPIWQYYLSKLVR
                     VLLCFVSSIAVVFAVGGLVKGVEMTAQEWVISALLLLVTSIVFLAIGLLLVQIQSEQT
                     MSVVANLLYFVLAIMGGSWMPVSLFPDWVQRICKLMPSYHVNQLVTTYAQEGDFLWKS
                     LLIVLGYAIIFLGIALVMNRKTEQQ"
     gene            complement(2612..3490)
                     /locus_tag="U1404_001407"
     CDS             complement(2612..3490)
                     /locus_tag="U1404_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348356.1"
                     /translation="MIEVRALDKVIKGRTILSDISFEIKSGECVALIGPNGAGKTTLM
                     SCLLGDRKATKGQVLLDGLAPQAQSNKEKVAVLPQENAIPTDLKVKELLRFFQAIYKD
                     SLTDVEIDSLLCFSPEQKNQLAGKLSGGQKRLLAFVICLIGKPKLLFLDEPTAGMDTS
                     TRQRFWEIVHELKEKGVTIFYTSHYIEEVEHTAERILVLHQGRLLRDTTPFAMRSEEQ
                     EKEVTLPIAFAAVVESLAEINEISYKQDTVSFKTRAIEQVWASLQEAGCRISDLEVQN
                     KTLLNSLFDKTREEES"
     gene            complement(3745..4263)
                     /locus_tag="U1404_001408"
     CDS             complement(3745..4263)
                     /locus_tag="U1404_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEM5348357.1"
                     /translation="MMKQKYYQSPAEIASFSPRPSLADSKAVLNQAVADLSVAHSILH
                     QVHWYMRGRGFMIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFSTLKEFSENSQLKE
                     VPGDYNVTIEEQLVRVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEKHIW
                     MLQAELGQAPKL"
     gene            4468..4680
                     /locus_tag="U1404_001409"
     CDS             4468..4680
                     /locus_tag="U1404_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEM5348358.1"
                     /translation="MSEEKFDAKLEQLSGSAKEVIGKLTGDKEIEVEGLVEKGIGKAK
                     ELVEDAKDGLEGAINGIKKAFDKEEK"
     gene            4850..5284
                     /locus_tag="U1404_001410"
     CDS             4850..5284
                     /locus_tag="U1404_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEM5348359.1"
                     /translation="MKKIVFVCLGNICRSPMAEFVMKDMTSQFHIESRATSNWEHGNP
                     IYSGTQKIFQKHKIPYDKTKTSQQISQADFEEFDVIIGMDSNNVRDLQKMAPAHAQNK
                     IFQFAEKSVPDPWYTGDFDETYEMVKKGCQDWLDRLQSFDQE"
     gene            5416..5838
                     /locus_tag="U1404_001411"
     CDS             5416..5838
                     /locus_tag="U1404_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348360.1"
                     /translation="MKEFKLPSIKWHDITSHFTRPKLEILSLIIILICALSVFTGRIA
                     SKQAMTFNNGALQYNGYVVANKMNGQGKLTFDNGDVYEGQFKNGIFHGQGTYTSASGW
                     VYTGQFKNGYADGKGKLTTEGQATYEGTFKQGIYQYEN"
     gene            5828..7627
                     /locus_tag="U1404_001412"
     CDS             5828..7627
                     /locus_tag="U1404_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEM5348361.1"
                     /translation="MKIKWLSVIRVIGLVFVLLYHFFIKYFPGGFVGVDLFFTLSGYL
                     TTALLIDEFAKHKKIDIVSFFRRRFYRILPPLVLTILLVLPLALLVRNDFIANIGNQI
                     AAALGFMTNFFEILSGGSYENQFSPHLFVHTWTLAIEVQYYLVWAGLVWYLTRISKSV
                     GQLRGSIFLTSISLFSLSFLAMSISSFFVDNFSTIYYSSFTHTFPFFLGSVLATIAGI
                     GNTTTAFQQQVNTLSIKQAIGLFLGGLGVELLLLFTLQFSSIWTYLIGFLLSSLATAT
                     MIFAARVLHEKTEDVKEPAIILFFASISYGIYLFHWPLLIIFTQLTNATIAAGLSFVF
                     STILSTISFYILEPYIAGKVGSLFGLPIDLKTYKKWLLGSFACLTIVGLGICLFAPKL
                     GSFEQESMVSNLYQAQTQLNTTRSAAENAKATSFEIQKGVIIFGDSVTVRASSAIQTA
                     LPDAQIDGTVSRNLSEIAKLINLYKQNNSLKETVVVTLGTNTTDNYQELLDQLVKDFP
                     KGRRLIFVTPYDGNFTPSESISYQTGQYEKELAEKYDYISIADWYQVAKDNPPIWYNT
                     DLVHFNLESNGGEVFAQTIKNAVEAVADGPIKN"
     gene            complement(7851..8489)
                     /locus_tag="U1404_001413"
     CDS             complement(7851..8489)
                     /locus_tag="U1404_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM5348362.1"
                     /translation="MHLRNASFFALAFVILGYVVKFYPSTLAGFDSTVQSAIRGNLPS
                     GASQFWTSITVLGNTVIILAITLILAAIFYYYKKWKIEAYFLLASFAAMGVASTALKY
                     VYQRPRPSIEWLIDTIGYSFPSWHTASTMMIVGAVVIIVHQRMKKGIARLVLKAVLIL
                     LAVLVAVSRIYIGVHYPTDIIGGWLLAVTLLQMMYPFYDQKRFEWRFQSKQK"
BASE COUNT         2552 a         1922 c         1696 g         2327 t
ORIGIN      
        1 tcgttactac ttacgcagat agaaccctgt tactattttg tttcaaggta acaggctcca
       61 ctggagcctt tcactcatca aatcaagtca acaacgtctg attttgattt tcgaagagta
      121 taaaaactca gtcaaaaatc aggtctataa aaagattgga caaatgccca atctcattcg
      181 tttatactaa ccaacccttt tcctgcgcaa ttctgacagc agccgtacga ttttcagctc
      241 ctaatttgga caggattgag gtcatatagt tgcggactgt cccgtcagac aggtggagct
      301 ggcaggcgat ttccttattg gacagcccct ctgccaccag cttgagcagc tgactttcca
      361 agttggttaa gggactgcgt tgggttagga gaatgtccat caactctggt gaatattcct
      421 ttcgccccgc caagaccgtt tcaatggtcc gcatgaggtc tgctatggag cgttccttga
      481 gcacataggc atccacatct gccttgaccg cccgctcgaa atagcccggt cgcttgaagg
      541 tggtcatgat gacgaccttg acaggcaagg cttgcccccg cacccattcc aagacatcca
      601 ggcccgtctt ttcaggcatt tctatatcta gtagcaccac atctactggc tctttttcca
      661 aaagagcaat ggcctgactg ccgttttctg cctgtaaaac agcctcaacc gcatcttgaa
      721 agcccaagag ttgacagagg gcgtcccgca gcattgcttg atcttctgcg actaagattc
      781 tcattctacc acctcctcaa acggaattcg gatggacagg cgggtgggct tggctagaga
      841 gataaattcc aaacttcctt tcaccgttac caacctgtcc tttatagtat gtaattcctg
      901 accagtcaac tgggcaaagc ccacaccgtt gtcttcgtag tatacaacca attcttgctg
      961 gtctttttca aaaaccaaac ggcacttgct agcctggctg tgcttgagca ggttattggc
     1021 caactctctc agcaccatag ccagcttgtt ctggacgggc aagctgagct gctctgctat
     1081 ttccccgccc aagacaacta agtccactcc tgccaggtcc aacatctgct gtaaaatctg
     1141 gagttcctct gccacggtgt gctgcttgag ggactggaca atctggcgga cctcctgcat
     1201 ggagtccttg gccaaggtct gaaggtctgc cacctccttc ttggcctggt caatctgatc
     1261 atggtctaaa agtgtctgga ccagctcggc cttgacagac agcatggcaa agacatggcc
     1321 cagtgtatcg tgcaagtcct gaccgatacg gttgcgttca ttctcagcca gaaggagatt
     1381 gattgaagca ttctgctcct gtaggcgttg ctgaagggct gcccgtttgg tctcaatcca
     1441 gctgaaaatc agcaaggcca agccgaaaaa gtggataaca agtgcaaagg ctctcatctc
     1501 aaaaggaaca gggccaaaga gagcccatag gataatagcc agcaacaaaa gcccgtagga
     1561 caccgtccga taggtcggtc gattctcttt ataataccag cccaacatat tggacaggtt
     1621 aaagatgaag agggaaaatt gcagattgcc ccaaaaactc atgacggcga tatagccaat
     1681 caggtaaaac caagccagca tggaatagag cttgtggtcg gtataaaaga gggagcaata
     1741 aaccaaggca aagagaatag tcgctaggac aactgccgtc ggattgggag tatactgggc
     1801 gtaataaagt ggaaaataga gaaagatcat gcccacgaag aacatgagcg gtacctttct
     1861 tttttcaaaa atcatagttc acctcactgt tgctcagttt ttctattcat aactagagca
     1921 attcctaaga aaattatggc atatcctagg acaattagca aggatttcca gagaaaatct
     1981 ccctcttgag cataggtggt caccagctgg ttgacatggt agctcggcat gagtttgcag
     2041 atccgctgta cccagtcagg aaagagggaa acaggcatcc aagagccacc catgatggcc
     2101 agaacaaaat aaagcaagtt ggccaccacc gacatggttt gttccgactg aatttgcacc
     2161 aaaagcaagc caatagctag aaatacgata gaggttacta aaagtaagag agccgaaatt
     2221 acccattctt gagctgtcat ctctacaccc ttaactaaac cacccaccgc aaaaacaacg
     2281 gcaatagaag acacaaagca gagcaagacc cgcacgagtt tggaaagata gtattgccag
     2341 attggcagag gcgaatgctg gataaaggtc aaccaactat tgtttctatc ctctgccagc
     2401 atcatgggaa aggtgaaaag ggcaaagccc gacatggaaa agcctgtcat ggtcagcatg
     2461 taggactgga taaaggcctt ttgcatggtc gcatcatcaa actggaccgt cgatgagaaa
     2521 atcaggaaaa agatgacggg catgccgata gataggagaa aaactcccaa acttctagat
     2581 aatttgaccg cttctacttg caccaatgct ttcatgattc ttcctccctc gtcttgtcaa
     2641 ataggctgtt gagcaaggtt ttgttctgaa cctctagatc cgaaatccga caacctgcct
     2701 cctgcaagct agcccaaacc tgctcaatag ctcgggtctt aaagctaacc gtatcttgtt
     2761 tgtagctgat ttcattgatt tcagccaagc tctccaccac cgccgcaaaa gcaatcggca
     2821 atgtcacttc tttttcttgc tcctcactcc gcatagcaaa tggcgtggta tctcttagta
     2881 gccgcccctg gtgcaagacc aaaatccgct ccgccgtatg ctccacttcc tcgatatagt
     2941 ggctggtata aaaaatagtc acaccctttt ccttcaactc atggacaatc tcccaaaaac
     3001 gctggcgggt cgaagtatcc atgcccgccg tcggctcgtc caagaaaagc aacttgggct
     3061 tgccaatcag acagatgacg aaagccaaga gccgcttctg accacccgat agcttgccgg
     3121 ccagttgatt tttttgctct ggggaaaagc agagcagact gtcgatttcc acatctgtca
     3181 gactatcctt gtaaatagct tggaaaaagc ggagtaattc cttgaccttc aggtctgtcg
     3241 ggatagcatt ttcttgaggc aagactgcca ccttttcctt attcgactga gcctgtggag
     3301 ccagaccgtc caacaaaacc tggcctttcg tcgcctttct atcacccaac aaacaagaca
     3361 taagcgtcgt ttttccagcc ccgtttggac caatcaaagc cacacattct cctgacttga
     3421 tttcaaagga aatatcagac aaaatggtcc gtcctttgat aaccttgtct agtgctcgta
     3481 cttctatcat ttttctacct cctacttctt gaacatctta catacatagt ataactagaa
     3541 aagggaagcc ccactagaag cctttgtcat ggactcatgt gacaaatgtc atattatact
     3601 caacgaaaat caaaagtagc ctaggaaacg aagtcgaaga tagatctgga gttcatcaag
     3661 gcaagttgac aacggataat tttgatattc gaagagtatt aaataatgca gcaaaaaaag
     3721 agtccttctg gacccttcat ctatttacaa cttaggtgct tgaccaagtt ctgcctgcag
     3781 catccaaata tgtttttcaa tactagcctt agccacattg aaaatgtcgt tggttacgct
     3841 gtcaccttct tcatcactga catcaaaccc cttttggaaa agagcagcca gatagcggaa
     3901 cacctcgacc acacgcacca attgctcttc aatcgttaca ttgtaatcac caggaacttc
     3961 cttgagctga ctattttcac taaactcttt aagggtagaa aatggtgccc cacctaaggt
     4021 gattaaacgc tcactcatct catccaaata accatcaatt tcttccatat attcatccat
     4081 ctttggatgc caaatcataa agccacgacc acgcatatac cagtgaactt gatggaggat
     4141 tgaatgggct actgataaat cggccaccgc ttgattcaaa acagccttag aatcagccag
     4201 tgatggacgc gggctgaaag acgcaatttc tgctggagat tgataatatt tttgtttcat
     4261 catatatcac cctttctttt atttataata attataaata aaagaagaaa aaattgcaag
     4321 aattatccct catcctcctc tggcttattg acagacaaat cccttgctat attaacttat
     4381 atacgttaga ctagtaggta agaatagtat gtgattttct ttttagaaaa tcatcgcccc
     4441 catatgtgta tatcgaggag ggattttatg tcagaagaaa aatttgacgc aaaactagaa
     4501 cagctatctg gctctgcaaa agaggtaatt ggtaagctga ccggcgacaa ggaaatcgaa
     4561 gttgaaggac ttgttgagaa aggaattggc aaagcaaaag agctagtcga agatgcaaaa
     4621 gacgggcttg aaggtgccat taacggcatc aaaaaagctt tcgacaaaga agagaaataa
     4681 acaaagagtt caatataggt aggattggtc gtgcactgtt tgataatgaa cattacactt
     4741 aatttggtct tttacctata gcccgaacaa aaatatgcaa gagaggggaa ctcagacatt
     4801 tacctgtcga gtctgccttc tcttttctta tgccacgaaa ggagaatcta tgaaaaaaat
     4861 cgtttttgtc tgtcttggaa atatttgtcg tagccctatg gctgaatttg tcatgaaaga
     4921 catgacaagt caatttcaca ttgaaagccg tgccacttca aactgggaac atggtaatcc
     4981 tatctactct ggaacacaga aaattttcca aaagcacaag attccctatg acaagaccaa
     5041 aacctctcaa caaatctctc aagcagactt tgaggaattt gatgtcatca ttggtatgga
     5101 cagcaataat gtccgagatt tacagaaaat ggcaccagca catgcccaaa ataagatttt
     5161 tcaattcgca gaaaaatccg taccagaccc ttggtatact ggagattttg acgaaaccta
     5221 cgaaatggta aagaaaggtt gccaagactg gttggacagg ttacagtcat ttgatcaaga
     5281 ataagatttt ctatgtaata tttttgtaat atttgtaaaa aaatggtaaa ctatttctga
     5341 ctgaactgat aatttcttac agtatcctag aaagaactga ttagcatcgg tcaaatccta
     5401 tgaaagagta aaacgatgaa agagttcaaa ttacctagca taaaatggca tgatataaca
     5461 agtcatttca cccgtccaaa acttgaaatc ctctccctta ttatcatcct catctgtgcc
     5521 ctctctgtat ttacagggcg aattgccagc aagcaagcca tgactttcaa taatggcgcc
     5581 ctgcagtaca acggttatgt ggtcgcaaat aaaatgaatg gtcaaggaaa attgaccttt
     5641 gataatggag atgtctacga ggggcaattt aaaaatggaa ttttccacgg tcaaggaacc
     5701 tacacatctg caagtgggtg ggtttatacc gggcaattta aaaacggcta cgccgatgga
     5761 aaaggaaaat tgaccaccga aggacaagct acctacgaag gaacttttaa acaggggatt
     5821 tatcaatatg aaaattaaat ggttatccgt tatacgtgtg attggattag tctttgtcct
     5881 actctatcat ttctttatca aatatttccc aggtggcttt gttggggttg acctcttctt
     5941 taccctgtct ggatatttga caaccgccct tttgattgat gagtttgcaa aacataaaaa
     6001 aatagatatt gtcagctttt tcagaagaag gttctatcgg attctccccc ctctggtttt
     6061 aacgattctt ttggtccttc cacttgctct gcttgtccgc aatgatttca ttgccaatat
     6121 cggcaatcag atagccgctg cgctcggatt catgacaaac ttctttgaaa ttctatcagg
     6181 tggtagttac gaaaatcaat tttcacctca tctatttgtg catacttgga cactagccat
     6241 agaagttcag tattaccttg tctgggctgg tttagtttgg tatctgactc gcatctcaaa
     6301 aagtgtgggg caactacgtg gatcaatttt tctaacatct ataagcctct tctcgctaag
     6361 ttttttagca atgtctatct caagtttctt tgtggataat ttctcaacca tttactactc
     6421 gagcttcaca cataccttcc cattcttcct cggaagcgtt ctcgcaacca tcgctggtat
     6481 cggaaataca acaactgcct tccagcaaca agtgaataca ttgagtatca aacaagctat
     6541 aggtctgttt cttggaggac taggagtaga acttcttctt ctctttactc ttcaattcag
     6601 ttccatctgg acctatctaa ttggttttct tctatccagt ttagctacag caactatgat
     6661 ttttgctgct cgggtacttc acgagaaaac cgaagatgtc aaagaacctg caattatcct
     6721 cttctttgca agtatttctt atggtatcta cctcttccat tggcccttgc tcattatctt
     6781 tacacaactg acaaatgcca ctatcgctgc gggattatcc tttgtttttt ctactatcct
     6841 atcaactatt tccttctata ttctagaacc atatattgct ggtaaagtag gaagcttgtt
     6901 tggattaccc atagatttga aaacatataa aaaatggctt cttggtagct ttgcttgctt
     6961 gaccatagtt ggcttaggta tctgtctgtt tgcaccaaaa ttaggaagtt ttgaacaaga
     7021 gagcatggtt agcaatcttt atcaagctca gacccaacta aatacaacac gatctgctgc
     7081 tgaaaacgct aaagctacta gttttgaaat tcaaaaagga gttatcatct ttggcgattc
     7141 tgttactgtt cgcgctagtt ctgccataca gaccgcgcta ccagatgcac agatcgatgg
     7201 aaccgtcagt cgaaatctct ctgaaattgc taaattgata aatctttata agcaaaataa
     7261 tagcttgaaa gagactgtag ttgtaaccct aggtacaaat actacggata attatcagga
     7321 actactagac cagctagtca aagattttcc taaaggacgt cgccttattt ttgtcactcc
     7381 ttacgatgga aacttcactc cgagcgaatc catttcctat caaactggtc aatacgagaa
     7441 agaattggct gaaaaatatg attacatttc cattgcagac tggtatcaag ttgcaaagga
     7501 taatccacca atttggtaca ataccgacct tgttcatttc aatcttgaaa gtaatggagg
     7561 cgaagtcttc gcccaaacga taaaaaatgc tgttgaagcc gttgctgatg gtccaatcaa
     7621 aaactagatt tatacatcat tatcctctga gaatttctcg gaggattttt gcactatttt
     7681 cctataagtc cagcgcgaac tctaagaaat ggcgttgtgc ctgagctcag cctcaataaa
     7741 tcttgtgaaa taagccactt ctacaaagga cggcaaagcg aagtaacgat aatagaaaga
     7801 tgacaagtta aaactcctac cttttacagt aggagttggt gtcaaattga ctatttttgc
     7861 ttactttgga aacgccattc aaagcgtttc tgatcgtaaa atggatacat catttgtaaa
     7921 agagtgacgg caagtagcca accaccgata atatctgtcg ggtagtgaac cccaatatag
     7981 atacgggata cagctaccag gacagcaagt agaatcaaca cggcttttag cacaagtcta
     8041 gctatgcctt tcttcatcct ctggtgaaca ataataacaa ctgctcctac aatcatcata
     8101 gttgatgcag tatgccagct aggaaatgaa taaccgatgg tatcaatcaa ccattcaata
     8161 cttggacgcg gacgttggta gacatatttc agggctgtgg atgccacacc catcgccgca
     8221 aaactagcaa gtaggaaata agcttctatc ttccattttt tatagtagta aaagatagca
     8281 gctagaatca aggtaatagc taaaataata accgtatttc ctaaaacagt aatagaggtc
     8341 caaaattgac tggctccact tggtaaattt ccacgaatgg cagactggac agtcgagtca
     8401 aaacctgcta gggtactagg ataaaatttt actacatagc ccaatatcac aaaggccaga
     8461 gcaaaaaaag atgcgtttcg taaatggatt tgtttat
//
LOCUS       DASGCC010000087         8483 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.087, whole genome shotgun sequence.
ACCESSION   DASGCC010000087 DASGCC010000000
VERSION     DASGCC010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8483
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.087"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            429..1364
                     /gene="mvk"
                     /locus_tag="U1404_001414"
     CDS             429..1364
                     /gene="mvk"
                     /locus_tag="U1404_001414"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEM5348363.1"
                     /translation="MSVVGKANGKIILMGEHAVVYGQPAIAMPFSAVEIIAQVTAQGE
                     ALTVACDFYKGLVHKMPKIWESLKHAIRFSLYRIGAPTDPAIHIEISSTIPAERGMGS
                     SAAVAVAVARALFAYYKKELTDSELWDIVQSSEKIAHGNPSGIDAATTSGKSPVFFIK
                     HQPIEPFELKLHAYLVVADTGVTGNTLEAISDVADLLEKKPEAIKLVEELGNLTRQAK
                     EDLATGQAEILGSRMNQAHALLQKLGVSDPSLDKLVSLAQENGALGAKLTGGGRGGCM
                     IALARTAQDAQKLAHILDQAGARQTWIQYLGETND"
     gene            1357..2382
                     /gene="mvaD"
                     /locus_tag="U1404_001415"
     CDS             1357..2382
                     /gene="mvaD"
                     /locus_tag="U1404_001415"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HEM5348364.1"
                     /translation="MTKQIGIARAHTNIALIKYWGKRDKELFLPMNSSLSLTLDAFYT
                     DTKVVFDPELTADEFYLNGMLQKEKEILKISRFLDLFCEYIGERAFARVESLNFVPTA
                     AGLASSASAFAALALATATALDLDLSPATLSTLARRGSGSSTRSLFGGFVEWDMGTGS
                     EDSMAHPIDDADWDIGMVVLAVNTGPKKIASREGMDHTVATSPFYSAWVDTAKQDLAD
                     IKAAIAGRDFEKLGQITEHNGMKMHATTLSANPPFTYWSADSLVAQEAVRQVREATGL
                     SAYMTMDAGPNVKVLCRASQMDELVAELAKVFPREKIITSKPGPAAYVLSEDEWQTSQ
                     AAFEKGL"
     gene            2384..3463
                     /locus_tag="U1404_001416"
     CDS             2384..3463
                     /locus_tag="U1404_001416"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HEM5348365.1"
                     /translation="MKVQVKIPGKLFLAGEYAVVEAGYPAVIAAVDQYLTVTIETSDR
                     GLLHSSQQADLYLTWERKEGIAHVQGDHPYALIETAMQVTEAYLTAKGYACHGTYSLA
                     VQSDLDDQTSGAKYGLGSSGAVTVATVKALLTYYGHRPGALLAYKLAALAQTKLGMTG
                     SFGDLAASSFGGLIAYHSLDRSWLLGKMAELSLLDLVESDWQSLSISPIQLPQGLDLL
                     VGWTGSAASTDSLVSQMESQKSQAEKEQIHSWFLADSKTCVEQLIVACQTNDSASVRQ
                     GLAQNRKLLQDFARGMGLVIETPQLSQLCDLAQTYGAVAKSSGAGGGDCGICLVDSKE
                     QKVAIEKAWQEAGILPLQLKITSRE"
     gene            3474..4571
                     /locus_tag="U1404_001417"
     CDS             3474..4571
                     /locus_tag="U1404_001417"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEM5348366.1"
                     /translation="MFYLGEFGLDRKDQHVGLANQQYSATPAKDFTETLFVHHSLPQT
                     KVDEVDISTSVAGLDFAFPFFINAMTGGSKKTREINRLLGIMGHFGKIALASGSVSAA
                     IKDPSVAETFSVMRRENPYGIIFANLGAHHSVENAKRAVDLLEANAIQIHVNAPQEIV
                     MPEGDRDFTMWLKNIETLVREVEVPVIVKEVGFGMSRETVAQLASVGVQTIDVSGTGG
                     TDFAKIENARRTFNDYTYLEGWGQSTVTSLVEAMSVSEEVRPSLIASGGIKTPLDIVK
                     SLALGADLVGMSNHFLQYVKDGKGHRFDDGLQAIKTYQWQMAEIMTMLGAKNIAELRQ
                     KDLVLAPNVQNWCEARGIDWKAYARRSANVS"
     gene            complement(4654..6402)
                     /locus_tag="U1404_001418"
     CDS             complement(4654..6402)
                     /locus_tag="U1404_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348367.1"
                     /translation="MLSKTKQASVFWRLLSYLKAYRLLTVLALSFLLLTTVVRSLIPL
                     LASYFIDHYISSISETAAAILAAYFALYLLQMVLQYFGNLWFAKVSYSIVRDIRRDAF
                     GRMEKLGMAYFDQTPSGSIVSRITNDTESISEMFSGILSSFISALFIIITTLSTMFAL
                     DWKLTCLIVLFLPLIFLLVDQYRKRSAPIVAKTRSLLSAINSKLAESIEGIRIIQAFS
                     QEDRLKEEFEAINQEHLDYASRSMALDSLFLRPALSLVKILAYALLMTYFGLDWSQAG
                     ISAGLIYAFIQYVNRLFDPLLDVTQHFSTLQTSMVSAGRVFTLMDQTIEEPLQLDRGA
                     KIDKGHIVFEDVYFSYDGKRQILDKVSFEVRQGQTIAFVGATGSGKSSIINVFMRFYE
                     FQSGRILIDGQDIRSFSQEELRSAIGLVLQDPFLFHGTIATNIQMYQDISREEIEEAA
                     RFVDAAPFIEKLPEKYDHLVTERGTSFSTGQRQLLAFARTMASQPKILILDEATANID
                     SETEQTVQTSLEKMRKGRTTIAIAHRLSTIQDADCIYVLDKGKIIESGNHEQLLSLKG
                     HYHRMYQLQAGQLTAT"
     gene            complement(6392..8134)
                     /locus_tag="U1404_001419"
     CDS             complement(6392..8134)
                     /locus_tag="U1404_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5348368.1"
                     /translation="MKIIKQLWWFFSLEKKAYLIGILSLCLVSLLNLLPASIMGQLID
                     QIASGQLTEHRLLLGVAGLILSALAMYGLRYLWRMNILATSYRLGKIMRARLFNHFMH
                     LSPSFFQQYRTGDLMAHATNDINALTRLAGGGVMSFVDATVTALVTLVTMSVSISWQM
                     TLVAILPLPFMTLTTNFLGRRTHENFKASQAAFSELNNKVQEAVSGIKVTKSFGYQEQ
                     ETAAFQEVNQAAFLQNIKTMRYDALFNPAVLFFIGLSYLLTLLVGSHFISQGQVSLGQ
                     LVTFMTYLDLLVWPLMAIGFLVNISQRGDVSYNRIQTLLSISSEVIETDQPLPAPSNG
                     EIVYEISEFAYDNIPVLQDIQFHIKKGQTIGLVGPTGSGKTSLLKLLMREYDVTNGQI
                     LLNQQNIKHYKLGDLRQLMGYVPQDQFLFATSVAENIRFGNPDLSLDQVKEAAKAVHV
                     YEDIQDMPDRFDTMVGEKGISLSGGQKQRLAMARAMILNPDILLLDDSLSAVDAKTEH
                     AILETIKQERLDKTTIITAHRLSAIVHADLILVLEDGKIVERGRHQELLDEKGWYYDT
                     YMMQQLEKEESDAL"
     gene            8391..>8483
                     /locus_tag="U1404_001420"
     CDS             8391..>8483
                     /locus_tag="U1404_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEM5348369.1"
                     /translation="MKAIVTVVGKDKSGIVAGVATKIAELGLNID"
BASE COUNT         2321 a         1861 c         2152 g         2149 t
ORIGIN      
        1 aatttctttt tcatataatc tccagagaac agtcgactgc ggtcggctgt tttcgtgtca
       61 agttttaaga aaataagtat gagaaattgc tttagaaaaa tctaagaaat ctttcagttt
      121 cgcttaagtt tgtggatgta tactatattc aagctagaaa tagcgaacaa ctttcttttt
      181 catataatct cctagagaac agtcggctgc ggccggctgt tttcgtgttt cggcgcattt
      241 tggaagtttg tttagtttat attcgtccat cttttcacca aaaggtgtcc ctatctctaa
      301 gtcgcaagcg acaaagagct aggtatcata taatctctag agagcagtcg gccgcggtcg
      361 gctgttttcg tgtgttctat tcttatgtaa aaatggtata atagtagtga ttgtataagg
      421 agaaaagtat gtcggtagta ggaaaagcaa atggaaaaat cattttgatg ggagagcatg
      481 cggtggtcta tgggcaacca gcaattgcta tgcctttttc tgctgttgaa attattgctc
      541 aggtaactgc tcaaggggaa gcgctgactg ttgcttgtga cttctataaa ggcttggtgc
      601 acaagatgcc aaaaatctgg gaaagcctca agcatgccat ccgtttctcg ctctatcgta
      661 tcggagcacc gacagacccg gctatccata tcgagattag ttccaccatt cctgccgagc
      721 gcggtatggg ctccagtgca gccgtggcag ttgcagtagc acgcgccctc tttgcctact
      781 ataaaaaaga gctgacagac agcgaactct gggacatcgt ccagtcttcg gaaaaaattg
      841 ctcacggcaa tccatcaggc atagatgcgg caaccaccag cggcaagtcc cccgtctttt
      901 ttatcaagca ccagcccatc gaaccttttg agctgaaact ccatgcctat ttggtagtgg
      961 ctgatacagg tgtgacggga aacaccttag aagccatttc ggacgtggct gatttgttgg
     1021 agaaaaagcc agaggctatc aagctagtag aagaactggg gaacttgacc cgacaggcca
     1081 aggaagattt agccacaggc caggcagaga ttctaggtag cagaatgaac caagctcatg
     1141 ccctcctgca aaaattaggc gtgtctgatc ctagcctaga taagctagtc agccttgccc
     1201 aagaaaatgg agccctagga gccaaattaa ctggtggcgg ccgaggaggc tgcatgattg
     1261 ccttggcaag aacagctcag gatgcccaaa aacttgcaca catccttgac caagcaggcg
     1321 cccgccaaac ctggatacag tacttaggag aaaccaatga ctaaacaaat aggcatagcc
     1381 cgtgcccata ccaatattgc cttgattaaa tactggggaa aacgcgataa ggaattattc
     1441 ctacctatga attccagttt atccctgacc cttgacgcat tttatacgga taccaaggtc
     1501 gtttttgacc cagaattaac tgctgatgag ttctatctca acggaatgtt acaaaaagaa
     1561 aaagaaattt taaaaatttc tcgatttttg gatttatttt gcgaatatat aggtgaaagg
     1621 gcatttgccc gagtggaaag tctaaatttt gttccgactg cggctggttt ggcaagctca
     1681 gcatcagctt ttgcagcgct ggctcttgca accgcaactg ccttggattt agatttgtca
     1741 ccagctaccc tatcaaccct tgctcgcagg ggctcaggtt ctagtacccg tagcctattc
     1801 ggtggatttg ttgagtggga tatgggaact ggttcggaag attcgatggc tcatcccatt
     1861 gacgatgcgg attgggatat cggcatggtc gtcttggcgg tcaataccgg accgaaaaag
     1921 attgccagtc gagagggaat ggaccacacg gttgctactt cgccatttta ctcagcctgg
     1981 gtagatacag ccaagcaaga cttggcggac atcaaggcag ctattgccgg ccgtgatttt
     2041 gaaaaacttg gtcagatcac agaacacaat ggcatgaaga tgcatgccac aacgctttct
     2101 gccaatccac cctttaccta ctggtcagcc gatagcctag tggctcaaga ggcagtccgt
     2161 caggttcgtg aagcaactgg cttgtcagcc tatatgacca tggatgctgg accaaatgtc
     2221 aaggtcctct gccgagcaag tcaaatggat gagctagtag ctgaattggc caaagtcttc
     2281 ccaagagaga aaatcattac cagcaagcct ggtcctgctg cctacgtcct cagtgaagac
     2341 gagtggcaga cctcacaagc agcgtttgaa aagggcttgt agcatgaaag tacaagtaaa
     2401 gatacctgga aaactctttc tagcagggga atacgcagtt gttgaggccg gttaccctgc
     2461 ggtgattgcg gcggttgacc agtacctgac cgtcaccatt gaaacaagtg accgaggcct
     2521 tcttcattcc agccagcaag cagatctcta tctgacctgg gagcgtaagg aaggtatcgc
     2581 tcatgtccaa ggtgatcatc cctatgctct gattgagaca gccatgcagg tgacagaagc
     2641 ctatctgaca gccaagggct atgcttgtca tggaacttac agtctagcgg tccagtctga
     2701 cctggatgac cagacttcag gtgccaagta tggtctgggg tcgtcagggg cagtaacggt
     2761 tgcgacggtc aaggccttgt tgacctacta cggtcaccga ccaggtgccc tccttgccta
     2821 caagctggcg gccttggccc agaccaagct aggcatgaca ggttccttcg gagatttggc
     2881 ggcttccagt tttggcggct tgatcgccta tcattccctg gaccgttctt ggcttttagg
     2941 gaaaatggca gagctgtccc tgctggatct ggtggaaagt gattggcaaa gtttgtctat
     3001 cagccctatc cagttacccc aaggtttaga cctcttggtg ggatggacag ggtcggcggc
     3061 ttcgacggat agtctagttt cccagatgga aagccaaaaa agtcaggcag aaaaagagca
     3121 aattcatagc tggtttctag ccgactctaa gacctgtgta gagcagttga tagtagcttg
     3181 tcagacaaat gactcagcgt cagtaaggca gggccttgct caaaaccgca aactcttaca
     3241 ggactttgcg agaggaatgg gcttggtcat tgaaacgcct caactgagcc aactctgtga
     3301 cctggcccag acttatggag cggtggccaa gtcatctggt gcaggtggtg gtgactgtgg
     3361 catttgcttg gtagacagta aggaacaaaa agtagcgatt gagaaggctt ggcaagaagc
     3421 tggcattctt ccactccaac taaagatcac aagtagagaa taaggagaac cctatgtttt
     3481 atctaggaga atttggttta gaccgcaagg atcaacacgt tggcttggcc aaccagcaat
     3541 atagtgccac accggccaag gactttacgg agaccttgtt tgtccaccat tccctgcctc
     3601 aaaccaaggt ggatgaagtg gatatttcga ccagcgtagc tggtttggac tttgcctttc
     3661 ctttcttcat caatgccatg actggtggaa gtaagaagac ccgcgaaatc aaccgtctgt
     3721 tgggaattat gggacatttt gggaagattg ctctggcttc tggttcggtc agtgcggcga
     3781 tcaaggatcc atctgttgcg gaaaccttct ctgttatgcg tcgggaaaat ccttacggga
     3841 ttatttttgc caacctaggt gcccatcaca gtgttgagaa tgccaagcgg gcggtggatt
     3901 tgttggaggc aaatgccatt cagatccatg tcaatgcccc ccaggagatt gtcatgcctg
     3961 agggagaccg tgactttact atgtggttga aaaatattga aacccttgta cgtgaggtgg
     4021 aagtacctgt catcgtcaag gaagttggtt ttggcatgag ccgtgaaact gtcgcccagt
     4081 tggcttctgt cggtgtgcaa actattgatg tgtctggtac tggggggacg gatttcgcca
     4141 agattgaaaa tgcccgccgt accttcaatg attatactta tctagaaggt tgggggcagt
     4201 ctaccgtgac ttccttggta gaagccatgt ctgtttctga agaagttcgc ccaagcctga
     4261 ttgcatctgg tggtattaag acgccactag atattgttaa atcattggct ttgggtgcag
     4321 accttgttgg tatgtccaac catttcctcc agtatgtcaa ggatggtaag gggcatcgtt
     4381 ttgacgacgg cttgcaggct attaagactt atcaatggca gatggctgaa atcatgacca
     4441 tgctgggcgc taagaatatt gcggaactcc ggcagaaaga tttggtcttg gctccaaatg
     4501 tacaaaactg gtgcgaagcg cgtgggattg actggaaagc ctatgcccgt cggtcagcga
     4561 atgtgagtta aagagagaga tagttctcaa caatgtagaa aaataaaaaa gccaggtcca
     4621 ttttggaact tggcttttgt catggagtgg tttctaggtt gctgttaact ggcctgcttg
     4681 taactggtac atgcggtggt agtgaccctt gagggatagg agctgttcgt ggtttccaga
     4741 ctcgatgatt ttccccttgt ccaagacata gatacagtca gcatcttgaa tggtcgatag
     4801 gcggtgggcg atggcaatag ttgtccgccc ttttcgcatt ttctcaagag aagtctggac
     4861 cgtttgctct gtctccgaat cgatattggc ggtagcctcg tctaaaataa gaatcttagg
     4921 ctgactggcc atggtgcgtg caaaggccag aagttgccgt tgacctgtcg aaaaagaggt
     4981 gccccgctca gtgaccaggt ggtcgtattt ctcaggaagt ttctcaataa agggagcagc
     5041 atccacaaat cgagccgctt cctcaatctc ctctcgggaa atatcctgat acatctggat
     5101 attggtcgca atggttccgt gaaaaaggaa gggatcttgc aggactaggc caatcgcgga
     5161 ccgcaattct tcctgcgaaa agctacgaat atcctgaccg tcaatcaaaa tccgtccaga
     5221 ttggaattca tagaaacgca taaagacatt gatgatagaa gatttgcctg atcctgtagc
     5281 acccacaaag gcgatggtct gcccctgtct cacttcaaag gaaaccttgt ccagaatttg
     5341 ccgcttgccg tcataggaaa agtaaacatc ctcaaagaca atatgcccct tgtcaatctt
     5401 ggcccctcgg tccagctgta gtggctcctc gatggtctgg tccatgagcg taaagacccg
     5461 tccggcagat accatagagg tttggagggt ggaaaaatgc tgcgtgacat ccagcaaggg
     5521 atcgaaaaga cgattgacat actggatgaa agcatagata agaccagcag aaattccagc
     5581 ctgtgaccag tccaaaccaa aataggtcat gagtagggca taggccaaaa tcttaacaag
     5641 tgacagggca gggcggagaa agagactgtc caaggccatg gaacgactgg catagtccag
     5701 atgttcctgg ttgatagctt cgaactcttc tttcaatcgg tcttcctgag aaaaagcctg
     5761 gataatccga attccttcaa tactttcagc cagtttgctg ttgatggcac tcaacagact
     5821 tctagttttg gccacaatgg gagctgaccg cttccgatat tgatcaacca ataagaaaat
     5881 caagggaaga aagaggacga tcagacaggt caatttccaa tccagagcaa acatggtcga
     5941 aagagtcgtg atgataataa agagagctga gataaaactg gataaaatcc ctgaaaacat
     6001 ctctgaaatg ctctccgtat cattggtgat tcgcgagaca atggagccac taggagtctg
     6061 gtcaaagtaa gccattccca gcttttccat tctcccaaaa gcatcccggc gaatatctct
     6121 gacaatgctg taagaaactt ttgcaaacca gagatttcca aaatattgaa gcaccatttg
     6181 gagcagatag agggcaaagt aggccgctag aatagccgca gctgtctcag aaatcgagga
     6241 aatatagtgg tctataaagt aagaggctag aaggggaatt agactgcgga ctacggtagt
     6301 cagcaataaa aagctcaagg caaggactgt cagcagtcga taggctttga gataggacaa
     6361 gagtcgccaa aaaacactgg cttgcttggt tttagagagc atcactttcc tccttttcga
     6421 gttgctgcat catataggta tcgtagtacc agcctttttc atctagtaat tcttggtgac
     6481 gacctcgttc tacgattttc ccatcttcaa ggaccagaat caaatcggca tggacaatag
     6541 ctgacagacg atgggcggtg ataatggtgg tcttatcaag gcgttcttgc ttgatggttt
     6601 caagaatagc gtgctctgtc ttggcatcca ctgccgagag cgaatcgtcc aagagtagaa
     6661 tatctggatt gagaatcata gcacgagcca tagccaaccg ttgcttttgt ccaccagaca
     6721 gggaaatccc cttttcacca accatggtgt caaagcgatc tggcatatcc tggatatcct
     6781 catagacatg gacagctttg gcagcctctt tcacctggtc tagtgagagg tctggattgc
     6841 caaagcggat attctcagcc acgctggttg caaagaggaa ctggtcttgg ggaacatagc
     6901 ccatcaactg ccgtaggtca ccgagcttgt agtgctttat gttttgctga ttgagcaaaa
     6961 tctgtccatt tgtcacatcg tattctcgca tgaggagctt gagtaggctg gtcttcccag
     7021 agcctgttgg ccccaccaga ccaattgtct gccctttttt gatgtgaaac tggatgtctt
     7081 ggaggactgg tatgttatca taagcaaatt cgctaatctc atagacaatc tctccattgc
     7141 ttggtgcagg cagcggttgg tctgtttcaa tgacctctga ggaaatgctg agaagggtct
     7201 gaatccgatt gtaagataca tcaccacgct ggctaatatt gaccaaaaaa ccgatggcca
     7261 tgagcggcca gacgaggaga tctaaatagg tcatgaaagt tactagctgg cccagactga
     7321 cctgaccttg cgagatgaag tgagagccga ccagaagggt cagcaggtag gacaggccaa
     7381 taaaaaagag gacggcaggg ttgaacaggg catcgtaacg catggttttg atattctgca
     7441 agaaggctgc ttggttgact tcctgaaaag ccgccgtttc ttgttcttgg tagccaaagg
     7501 atttagtgac ctttatacca gaaacagctt cctgtacctt gttgttaagc tctgaaaagg
     7561 ctgcttgtga agccttgaaa ttttcatggg tacgacggcc tagaaaatta gtagtgagtg
     7621 tcatgaaggg cagggggagg attgcaacca aggtcatctg ccaggaaatg ctcacactca
     7681 tggtgaccag tgtaaccaag gcagtaacgg tagcatcaac aaaggacatg acgccaccac
     7741 ctgctagtcg tgtcaaggca ttgatatcat tggtcgcatg ggccattaaa tcccctgttc
     7801 gatattgctg aaaaaaggaa ggggataggt gcataaagtg gttaaacagc cgagccctca
     7861 tgatttttcc tagacgataa gatgttgcca ggatgttcat tcgccaaaga tagcggaggc
     7921 cgtacatggc caaggctgac aagatgagcc cagctacccc gagtagcaag cgatgctcag
     7981 tcaactgtcc gctggcaatc tggtcaatca actgccccat gatagaggcg ggcaggagat
     8041 tgaggaggct gaccaaacag agtgataaaa tcccaatcag ataggccttt ttctcaaggg
     8101 aaaagaacca ccacaattgc ttgataatct tcataagtat cctttctgaa caaaagaaag
     8161 gttggtagct tgtcgcaacc aacaaataat agaattcggt gacactagtg tatcacagac
     8221 tggtagaaat agaaagtttg caacttaaaa actaggcaac tctagccgta gccgaataga
     8281 agaaacagtt ggagttgtaa acacgtacga tacaggtaga aatcaaaaga tttttacctt
     8341 tttctgtcta tttatgataa aataaatgaa aatttagaag aggtgttcag atgaaagcta
     8401 ttgttacagt tgtcggtaag gacaagtcag gaattgttgc gggtgttgcg actaagattg
     8461 cggagttagg gctcaatatt gac
//
LOCUS       DASGCC010000088         8254 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.088, whole genome shotgun sequence.
ACCESSION   DASGCC010000088 DASGCC010000000
VERSION     DASGCC010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8254
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.088"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            24..1349
                     /locus_tag="U1404_001421"
     CDS             24..1349
                     /locus_tag="U1404_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348370.1"
                     /translation="MCYNHLMKKISDLGLTGRKLVGEGLILVFIGIGFLIAGWQFPGL
                     ILRFVHAGLFFLALYELSMTFFRKKKSSESVIALVGKAVLFGILASLDLAVQIPLYFA
                     AIFVGIYQLFTALINFITFYLYRKDGVQPRIRYLIDGIWLSLLGSASLFVSGTQLVVQ
                     TIVIGGYLILYGLTNLRDGFLFEEAIEQQSLKRHVRLTLPLFLAALVPRMTLQKVNDY
                     LADNEGQTAQSIYNRHKEIAEFPALEVFVHVGEEGFGAVGHVDLSYKGQVYGFGSYDV
                     LSERLGGAIGDGVLFRAERQAYIDFCNQEGMTMLGYQLALSSEQEKAVETRLAEIEGL
                     LLPWQPSAEKVSRRSDGQPIEMYAYRMKEAIGAVLFKFKKSKFKTYFVLSTNCVLLAD
                     SVIGQAGTDVLGLRGFIAPGTYQSYLDQEYEKPHSLVVAKNIYYRKEKS"
     gene            1425..4061
                     /gene="polA"
                     /locus_tag="U1404_001422"
     CDS             1425..4061
                     /gene="polA"
                     /locus_tag="U1404_001422"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEM5348371.1"
                     /translation="MKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPTGLHTNAIYGFN
                     LMLDHMMKRIEPTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDA
                     MGVKHYELAQYEADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKG
                     VAEFEEFTPAYLMEKMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSL
                     DGIYENIDSMKASKMKENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDEL
                     GQFYDDMGFKQLRAQLGTTSSQEEAVLDFQIVTEISPAMLKQDQFFYFEILGENYHRE
                     DLVGLAWGDKEKIYVGGPELLDSPVLRDFLENQTIKTYDFKRGKVLLDRKEITLPPAT
                     FDSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKGAKLDLPEREIFFPHLARK
                     VQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENE
                     VLIDQLTKEIYELAGQEFNINSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERL
                     APIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYVQDLTQTGRLSSTDPNL
                     QNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADI
                     HTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGITRKEAKAYIDT
                     YFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFAERTAINSPI
                     QGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMES
                     AISLSVPLIADENEGSTWYEAK"
     gene            4048..4830
                     /locus_tag="U1404_001423"
     CDS             4048..4830
                     /locus_tag="U1404_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM5348372.1"
                     /translation="MKQSKKGKSMKKLILCIGLCSLLLAGCGKASQKTEKTPASSGEE
                     FSTTLPILQEKQDTTNEQFNVLANAEVVAVNSTPPADETQKGHKIYAANNGVAEKDEN
                     GNIKEYFRYYNVPSTWTINAENTKDETVAAVYDVKEGGSNYMVQLYNINAFNQSPLED
                     GRNMTPEELEARMVETNHSFNEKTVVTINGQEWRVGRQLLTDQKLARLTFYRMESTAA
                     YDDSVVVGSIYYSLDPGTDKDRTNLKKVIGQVKDVVYQIAKK"
     gene            4950..5387
                     /locus_tag="U1404_001424"
     CDS             4950..5387
                     /locus_tag="U1404_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEM5348373.1"
                     /translation="MSYSFQNPSQDIIFDYLKNAKTIAVVGLSSREETAAYRVSKLMQ
                     EAGYKIIPVNPKAAGGTILGELVYSSLAEIDQPIDIVDVFRRSEFLPEVAQEFIQSNA
                     KIFWAQLGLESQEAEKLLRQAGRNDIVMNKCIKIEYLEMKEQY"
     gene            complement(5682..6524)
                     /locus_tag="U1404_001425"
     CDS             complement(5682..6524)
                     /locus_tag="U1404_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5348374.1"
                     /translation="MFTISNIRERARQTLNETPGIYQVAVIPVTISVIVQLISFSRNS
                     LAGVSAEELASPSYFISTSLFPVFYGLLLGMLSLSVIWTIFNIIKGGKTTTSFKDSLS
                     IFNHKDFWKIFRTYILKSFLLFLWGLLFYLGIGLLIGAGTMITIIAASSQSLDPDALP
                     MEILAILGLMAMGGILLMVLGTALYIPQIYAYSQVEYILFEQLEREEYTDAFSIIRSS
                     RKLMKGYKFKRFTLDLSFIGWFLLVIITFGLAGLYVWPYHYAAQMHFHEEILDDQAKK
                     MSYV"
     gene            6978..8120
                     /gene="tgt"
                     /locus_tag="U1404_001426"
     CDS             6978..8120
                     /gene="tgt"
                     /locus_tag="U1404_001426"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEM5348375.1"
                     /translation="MTDVPIKYRLIKKEKHTGARLGEIITPHGTFPTPMFMPVGTQAT
                     VKTMSPEELKAMGSGIILSNTYHLWLRPGDELVARAGGLHKFMNWDQPILTDSGGFQV
                     YSLADSRNISEEGVTFKNHLNGSKMFLSPEKAISIQNNLGSDIMMSFDECPQFYQPYD
                     YVKKSIERTSRWAERGLKAHRRPHDQGLFGIVQGAGFEDLRRQSAHDLVSMDFPGYSI
                     GGLAVGETHDEMNAVLDFTTPLLPENKPRYLMGVGAPDSLIDGVIRGVDMFDCVLPTR
                     IARNGTCMTSRGRLVVKNAQFAEDFTPLDPECDCYTCKNYTRAYLRHLLKADETFGIR
                     LTSYHNLYFLINLMKNVRQAIMDDNLLEFRQDFMEKYGYGKNGRNF"
BASE COUNT         2533 a         1583 c         1812 g         2326 t
ORIGIN      
        1 tttctgtaaa cacaagtcta gaagtgtgct ataatcatct catgaaaaaa ataagtgatt
       61 taggattaac aggtcgaaaa ttagttggag aaggtctaat cttagtcttc atcgggattg
      121 gatttttaat tgctggttgg caatttccag gactgattct tcgatttgtt cacgcaggtc
      181 tattcttttt agctttatat gaattgagca tgacattttt cagaaagaag aaatcgagtg
      241 aaagtgtcat tgcgctagtt gggaaggctg ttcttttcgg gatcctagcc agtctcgatt
      301 tagctgttca aattcccctc tatttcgcgg ctatttttgt tgggatttat caacttttta
      361 cagctcttat caatttcatt actttttacc tatatcgaaa agatggagta cagccacgga
      421 ttcgctattt aatagatgga atttggttat ccttactagg ttcagcttcc ctatttgtgt
      481 caggcacaca gctggttgtt caaaccattg tcatcggagg ttatctgatc ttgtatggac
      541 taactaatct gcgtgatggc ttcttgtttg aggaggcgat tgagcaacag agtctaaagc
      601 gccatgtacg cctaaccctc cccttgttcc ttgcagccct tgtaccacgg atgaccctgc
      661 aaaaagtcaa tgattacttg gcggataatg agggacaaac ggctcaatct atctataacc
      721 gccacaaaga aattgcggag tttccagcat tagaagtctt tgtacacgtt ggagaagaag
      781 ggttcggagc agttggacat gttgatttga gttacaaagg gcaggtctac ggttttggtt
      841 catatgatgt cctgtcagag cgtttgggtg gtgcgattgg tgacggagtt ttgtttagag
      901 ctgagcgtca ggcctatatt gatttttgta accaagaagg aatgactatg ttgggctatc
      961 aattggcatt gagttctgag caggaaaaag cggtagaaac tcgactagct gaaatagaag
     1021 gtttactgct tccatggcaa ccaagtgcgg aaaaggtctc tagacggtca gacggccagc
     1081 ctattgaaat gtatgcctac cgcatgaaag aggcaattgg ggcagtactt ttcaaattta
     1141 aaaaatcaaa attcaaaacc tactttgtcc tctcaaccaa ctgcgtcctt ttggctgatt
     1201 cagtaatcgg tcaagcagga acagatgtcc taggcttgcg cggtttcatt gctccaggaa
     1261 cctaccaatc ttatctggat caagaatacg aaaaacctca tagtttagta gtcgcaaaga
     1321 acatttatta tcgaaaagag aaatcctagt cactgactgg gattttctgt tattccagct
     1381 ctctaagttc cacaaaactc ccccatccat gctataatag agacatgaaa aaaaataaat
     1441 tattattaat tgatggctct tcggtagcct tccgtgcttt ctttgcactt tataatcaaa
     1501 ttgatcgttt taagagtccg acaggtcttc acaccaatgc tatctacggc tttaacctca
     1561 tgctggacca catgatgaag cggattgaac cgacccacat tctcgtggct tttgatgctg
     1621 gaaagaccac cttccgtacg gagatgtacg ccgattataa ggcaggtcgt gccaagacac
     1681 cagacgagtt ccgtgaacaa ttccccttca tccgtcagat gctggatgct atgggggtca
     1741 agcattatga gctggctcag tacgaggcag acgatattat cggtaccttg gacaaaatgg
     1801 cagagcggac agagattcct ttcgatgtga ccattgttag cggtgataag gacttgatcc
     1861 agctgacaga cgaaaacacc gtagttgaga tttctaagaa aggcgtagcc gaattcgaag
     1921 aatttactcc agcctacctc atggaaaaaa tggggattac ccctactcag tttattgacc
     1981 tcaaggcttt gatgggagat aagtccgata acattcctgg cgtgaccaaa atcggtgaaa
     2041 aaacaggtct aaaactcctg acagaatttg gttctttgga tggtatctac gaaaacattg
     2101 acagcatgaa ggcttctaag atgaaagaaa acctgattgc tgataaggag aaggccttcc
     2161 tatctcgtac acttgctacc attgatactc aggcaccaat cgaaattggt ctggatgaca
     2221 ttgtttatca aggccccaag gtggatgaac taggacaatt ttatgatgac atgggcttca
     2281 aacaattaag ggctcagtta ggtacgacca gctcgcaaga ggaagcggta ctcgatttcc
     2341 aaatcgtaac ggaaatcagc cccgctatgc tcaaacaaga ccagtttttc tattttgaaa
     2401 tcttgggtga aaattatcac cgagaggatt tggttggttt agcttgggga gataaggaga
     2461 aaatctatgt cggagggcct gagctacttg atagtccagt cttgcgtgac tttttagaaa
     2521 accaaactat aaaaacctat gactttaagc gtggaaaagt tcttctcgac cgaaaagaga
     2581 ttacgctacc tccagctact ttcgatagcc gtctagccaa atacttgctt tccaccgttg
     2641 aggacaattc cctaacaacc attgccaacc tctatggtca gatcagtctt gttccagatg
     2701 aggcagttta tggcaagggt gctaagttag acttgccaga acgcgagatc tttttcccac
     2761 acttggcacg taaggttcag gttttgattg agacagaaga gccgatgttg accaaattag
     2821 aagaaaatca gcaattagat cttttgtttg acatggagtt gccactggca aatgttttag
     2881 ctaagatgga aattgctggt attaaggtgg aagctgagac tctcaaagct atgcaatctg
     2941 aaaacgaagt tttgattgac cagttgacca aggaaatcta tgaactagct ggtcaggaat
     3001 ttaatatcaa ttcgcctaag cagcttggga ccattctctt tgaagagatg ggactaccgt
     3061 tggaatatac caagaaaacc aagacaggct attcaacagc agtagatgtc ttagaacgat
     3121 tagcgccaat tgcaccagtt gtttcaaaaa tcttggaata ccgtcagatt accaaacttc
     3181 aatcaactta tgtagtcggc ttgcaggatg ccattttaga agatggtaag atccataccc
     3241 gctatgtgca ggatttgaca caaacaggtc gtctatcttc gacggaccct aacttgcaaa
     3301 atattcctgt tcgtctagaa caagggcgct tgattcgtaa ggcatttgtg ccatcgcttg
     3361 aaaatagtgt ccttttggca tcggactatt cacagattga attgcgcgtc ttggctcata
     3421 tttctcagga caagcatttg attgaggcct tccagcaagg tgcagatatt cacacttcga
     3481 cagctatgcg ggtcttcggt atcgaaaaag ctgaggatgt gacaccaaat gaccgtcgga
     3541 atgccaaggc tgtaaacttt ggtgtcgtct atggtatttc agatttcggt ctatccaata
     3601 acttggggat tacacgtaag gaagctaaag cctatatcga tacctatttt gaacgcttcc
     3661 caggaattaa gaattacatg gaaaccattg ttcgtgaggc acgtgataag ggttatgtag
     3721 agacgattta caaacgccgt cgtgaattac cagatataaa ctctcgcaat ttcaatgtcc
     3781 gtaattttgc ggagcgaaca gctatcaact caccaattca aggttcggcc gcagatattc
     3841 tcaaagtagc catgattaat cttgacaagg ctttgactga agcaggtctt gcgacacgta
     3901 tgttattgca agtacacgat gagattgttt tggaagtccc agtggcagag ctagaaacgg
     3961 taaaagccat ggtaaaagag accatggaat cggcgattag cctgtctgtg ccattgattg
     4021 cggatgaaaa tgaaggttca acatggtatg aagcaaagta agaaaggaaa aagtatgaaa
     4081 aaattaattc tttgtattgg tctatgtagt cttctacttg caggttgcgg aaaagcatcg
     4141 cagaagactg agaaaacacc agcttcttca ggggaagagt tttcaaccac cttaccgatt
     4201 ttgcaagaaa aacaggatac tacgaatgaa cagttcaatg ttttagcaaa tgcagaggtt
     4261 gtagctgtta atagtacacc acctgccgac gaaacacaaa aaggccacaa gatttatgcg
     4321 gccaataatg gtgttgctga aaaagatgaa aatgggaata tcaaggaata tttccgttat
     4381 tataatgtgc catctacttg gacaattaat gcagaaaata ctaaggatga gacggtcgct
     4441 gcagtctacg atgttaaaga ggggggaagc aattacatgg ttcaactcta taatatcaat
     4501 gcttttaatc agtctccatt ggaagacggt cgcaatatga cgccggagga attagaagca
     4561 cggatggttg aaacaaatca ttctttcaat gaaaagacgg ttgtcacaat caatggtcag
     4621 gaatggcggg ttgggcgaca gttattaaca gatcaaaaat tagctcgtct gactttttat
     4681 cggatggaat cgacagctgc ttatgacgac tctgtggttg tgggttcaat ctattattcc
     4741 ttagatccag gaaccgataa agatcggacc aatcttaaaa aggttatcgg gcaagttaag
     4801 gatgtcgtgt accaaattgc taaaaaataa tcaaggtaga caagctataa tcagtaacga
     4861 gttaacactg acaagattgt gttatagcac accttattca ttaagctttt attgattcta
     4921 acatttaata tacattaaag gaggtctcta tgtcttattc cttccaaaat cctagtcagg
     4981 acattatctt tgactatctg aaaaatgcta agaccattgc agtggtcggt ttgtctagtc
     5041 gagaagagac ggcagcctac cgcgtttcca agctcatgca ggaagcgggc tataaaatta
     5101 ttccagttaa tcccaaggct gctggtggga ctattttagg cgagctggtc tatagtagtc
     5161 tagcagagat tgaccaacct attgatattg tagatgtttt ccgcagaagt gaatttttac
     5221 cagaggtagc acaggaattt atccagtcga acgccaaaat tttctgggct caactcggtt
     5281 tagaaagcca agaagcagaa aaactattgc gtcaggcagg tcgtaacgat attgtcatga
     5341 ataaatgtat caagattgaa tatcttgaaa tgaaagaaca atactaataa gtcgggtata
     5401 tttatccgac ttttttcatc gaaaaagcag ttcaatgaac cattgaactg ccggatgact
     5461 ctaaggagga gcacttagaa ttggaacaaa ttactacaca tggcgtaaaa aatagaaagg
     5521 aagaaatctg ctccaatacc aagcaggcta aaatagtcct ttgtcgctcc tcaattatag
     5581 tataacacaa tccaaatgtt tgtaccaatt attactatat ttttttctta aatatcaaca
     5641 caaaagtgta tataaaaata agagcaaata tcgctcttat tttatacgta actcattttc
     5701 ttagcctgat catctaaaat ttcttcatgg aagtgcattt gtgcagcata gtgatacggc
     5761 catacatata aacctgccaa tccaaatgta ataatgacaa gaaggaacca accaatgaaa
     5821 gataaatcaa gtgtaaagcg tttgaatttg taacctttca tcaactttcg gctagaccga
     5881 atgattgaaa aggcgtctgt atattcctcg cgttccaatt gttcaaacaa gatatattct
     5941 acctgtgagt aagcatagat ttgtggaata taaagagcag ttcctaaaac cataagtagg
     6001 atacctccca tggccattag ccctagtatg gcaaggattt ccataggaag tgcatcaggg
     6061 tctaaggatt gactggatgc agctataatc gtaatcatcg ttccagcacc gataagtaga
     6121 ccgataccaa ggtaaaacag tagtccccaa aggaagagca agaaactttt taaaatgtaa
     6181 gttcgaaaga ttttccagaa atctttatga ttgaaaatgc tcaaggaatc tttgaatgat
     6241 gtggtagttt tgcccccttt gatgatattg aagatagtcc atatgactga taatgacaac
     6301 attcctagta gcaatccgta aaatactgga aacaaagagg tagaaataaa gtagctcgga
     6361 ctagcaagtt cctcagccga cactccagca aggctattgc gagagaaaga aattaactga
     6421 acgataacag aaatagtgac ggggatgacg gccacttgat agataccagg tgtctcgttt
     6481 agcgtttggc gagcccgctc acgtatatta gaaattgtaa acatctacat aacctcctta
     6541 tcttaacatt gtaacataat tctagatgac aagctaggct ttttttgata gactggaagg
     6601 tgctgtggta tagtcgttta gtttgctttt atgaagtacg gcagagcgag ttcaaatact
     6661 ctagtggagt gtttgaagtt ggaaataagg aaacgaagtt tcctcgctcg tcgaagcaat
     6721 caaagataaa ctaaatgact ataatttgtc agtttgttgt gatgcgccta tctatttact
     6781 attaaataag tagaagacaa ggtaaatatc gctgaaataa gcgagaacat taaagacatt
     6841 ctgatggatt agaccatgca agattgagaa actgtatttc caggtaaagt acttttatgg
     6901 atgatatgaa agagctgaac tgtgaatcca gaactaatat cctaggactg tttttcctag
     6961 cgggaggtaa ataaaacatg acagatgttc caatcaagta tcgcttgatt aagaaagaaa
     7021 agcacacagg tgcacgtttg ggcgaaatca ttaccccaca cgggaccttt ccaactccga
     7081 tgtttatgcc agttggaact caggcaacgg taaaaaccat gtcgcccgaa gaattgaagg
     7141 cgatgggttc aggaattatc ctatctaata cctatcattt gtggcttcgt ccaggtgacg
     7201 aattggtggc gcgtgcaggc ggtttgcaca aatttatgaa ttgggatcaa ccgattctga
     7261 ctgactcagg tggtttccag gtttattctt tggcggatag tcgcaatatc tcagaagaag
     7321 gtgtgacctt caaaaaccat ctcaatggta gtaagatgtt cctgtcacct gaaaaagcta
     7381 tctctattca gaacaatctt ggctctgaca ttatgatgag ctttgatgag tgtccgcagt
     7441 tctaccagcc ttatgactat gtaaaaaaat ccatcgaaag aacaagtcgt tgggcagaac
     7501 gtggtctcaa ggctcaccgc cgtccgcatg accaaggttt atttggtatt gtccaaggtg
     7561 ctggttttga agatcttcgt cgccaatcag cccatgattt ggtcagcatg gattttccag
     7621 gatactctat tggaggattg gctgttggtg aaacacacga tgaaatgaat gcagtactgg
     7681 acttcacgac ccctctttta ccggagaata aaccacgcta tctcatgggc gttggagcac
     7741 cagatagctt gattgatggc gtaattcgtg gggttgatat gtttgactgt gtattaccaa
     7801 cacgcattgc gcgtaatgga acctgtatga ccagtcgtgg acgtcttgtg gtgaaaaatg
     7861 ctcagttcgc tgaggacttt acaccgttag atccagagtg cgattgctac acatgtaaaa
     7921 actatacacg tgcgtatctc cgccatttac ttaaggccga cgagacattt ggtattcgtt
     7981 tgacaagtta tcacaacctc tacttcttga ttaatttgat gaaaaatgtc cgtcaagcaa
     8041 tcatggatga caaccttttg gaattccgtc aagactttat ggaaaaatac ggttacggta
     8101 aaaacggacg taatttttag ataaaacagc cttctttgtg gacttagcct tgttctcata
     8161 ctcaatgaaa atcaaaatca aactaggcga cgcagatgca gatagaactg aagttcatca
     8221 aatcaagtca acaacgtctg attttgattt tcga
//
LOCUS       DASGCC010000089         8090 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.089, whole genome shotgun sequence.
ACCESSION   DASGCC010000089 DASGCC010000000
VERSION     DASGCC010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8090
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.089"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            5..586
                     /locus_tag="U1404_001427"
     CDS             5..586
                     /locus_tag="U1404_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5348376.1"
                     /translation="MYYEKNPTIAHDIHEIHVNLLDTPMSFMTDAGVFSKKMVDYGSQ
                     VLLKTLHFEKGASVLDVGCGYGPIGLTLAKVFNTKTTLIDINSRALDLATKNAERNGV
                     IAKIYQSNIYENVDETFNHIVSNPPIRAGKSVVHEVIAGAFQRLEAHGTLSIVIQKKQ
                     GAPSAKAKMEEVFGNCQIIKKDKGYYILESVKE"
     gene            583..1860
                     /locus_tag="U1404_001428"
     CDS             583..1860
                     /locus_tag="U1404_001428"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018543466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM5348377.1"
                     /translation="MRAVDLIQKKRDGLELSSEEIKWLIDGYVAGTVPDYQMSALAMA
                     IYFKGMSTREISDLTMSMVVTGEQIDLSAIPGIKVDKHSTGGVGDKVTLILAPLVASF
                     DIPVAKMSGRGLGHTGGTLDKLESIKGYQIEVSQADFIKQVQDTGVAVIGQSDNLVKA
                     DKLLYALRDVTATVDIIPLIASSVMSKKIAAGADAILLDVTVGEGAFMKTVEEARVLA
                     QTMVDLGKAVGRKTVAVLTDMSQPVGTSIGNRLEILEAIEILQGKGREDVTEFICELA
                     QIMLGLANVEKSIEEVRQHIDNGAALKKFEEMVRAQGGDLEDLYRPVQVTQQVPVLAE
                     EDGYIVGLPALEFGLFAMKLGAGRAVKTDNLDYETGIVFHKKVGEAVSKGEQIATIYA
                     NENISENMLTNFRKNVKIDKESVKTKEIIEIIS"
     gene            1876..2538
                     /gene="deoC"
                     /locus_tag="U1404_001429"
     CDS             1876..2538
                     /gene="deoC"
                     /locus_tag="U1404_001429"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEM5348378.1"
                     /translation="MKLNKYIDHTILKPETTQEQVEKILAEAKEYDFASVCVNPTWVA
                     LAAESLKDSDVKVCTVIGFPLGANTPAVKAFETKDAISNGADEIDMVINIGALKTGNY
                     DLVLEDIKAVVAASGDKLVKVIIEACLLTDDEKVKACQLSQEAGADYVKTSTGFSTGG
                     ATVADVALMRKTVGPDMGVKASGGARSYEDAIAFIEAGASRIGASSGVAIMNGAQADG
                     DY"
     gene            2525..2914
                     /locus_tag="U1404_001430"
     CDS             2525..2914
                     /locus_tag="U1404_001430"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM5348379.1"
                     /translation="METIDLIELAVKNSQKAYVPYSKFPVSAVLVAETGEIFTGVNIE
                     NASFGLTNCAERTAIFKAISEGVKDFSEIVIYGKTEKPISPCGACRQVMAEFFDKDLK
                     VTLVAKDKSTVETTVGELLPYSFTDLT"
     gene            2995..4062
                     /locus_tag="U1404_001431"
     CDS             2995..4062
                     /locus_tag="U1404_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEM5348380.1"
                     /translation="MNKKLVGLGLAAVAAVSLAACGNRASKSSSSEASSSADTSVKAA
                     IVTDIGGVDDRSFNQSAWEGLQEWGKAASLSKGNGYDYFQSASESDYITNLDSAVAGG
                     YNLVFGIGFALESAIAEVAPNNPNTHYVIVDSVVPDQDNVVSVGFADHEASYLAGVAA
                     AKSTKTNHVGFIGGMEGVIIDRFEAGFVAGAKSVNKDIKITVDYAGSFGDAAKGQTLA
                     AAQYAAGADVIFHASGGTGNGVFAAAKAENETRNEADKVWVIGVDRDQSAEGTYTSKD
                     GKSSNFVLASTLKQVGTSVKDIATKAAAGDFPGGQVLQFSLKDKGVELAETNLSEDAS
                     KAVADAKQAILDGKVEVPEKP"
     gene            4257..5792
                     /locus_tag="U1404_001432"
     CDS             4257..5792
                     /locus_tag="U1404_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348381.1"
                     /translation="MTKDYVIEMRNITKIFGEFVANDHINLNVRRGEIHALLGENGAG
                     KSTLMNMLAGLLEPTSGEIVINGQSVKIDSPSKAAQLGIGMVHQHFMLVDAFTVAENI
                     ILGSETTKGGVIDLKKAIAEIKELSTKYGLEVDPTAKVADISVGAQQRVEILKTLYRG
                     ADLLIFDEPTAVLTPAEIAELLKIMKALVEEGKSIILITHKLDEIRAVADSVTVIRRG
                     KSIETVAVEGATNQDLAEWMVGRSVSFKTEKVEASPKEVILSIKDLVVNENRGIPAVK
                     GLSLDVRAGEVVGIAGIDGNGQSELIQAITGLRKVKSGSITIKGEEVVGKTPRKITEM
                     QVSHVPEDRHRDGLVLPMTVAENFALQTYYKEPISKNGILNYNIINEKARALMEEFDV
                     RGASELVPIKALSGGNQQKAIIAREIDRNPDLFIVSQPTRGLDVGAIEYIRKRLIAER
                     DKGKAVLVVSFELDEILDVSDRIAVIHDGVIHGIVEPAKTNKQELGVLMAGGHIEKGE
                     EHA"
     gene            5785..6846
                     /locus_tag="U1404_001433"
     CDS             5785..6846
                     /locus_tag="U1404_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348382.1"
                     /translation="MLNKYKNLALPLMAVVSGILLGAIVMLVFGYDPIWGYEELFYSA
                     FGNIKSIGEIFRAMAPLVFTALGFAVASRAGFFNVGLSGQAYVGWVFAGWFALANPDL
                     PRPVLILGTVLIAMLAGGIAGAIPGILRAYLGTSEVIVTIMMNYILLYSCNYIIRDVF
                     ADSLMKNTDSTVNVSANASYQTEWLRALTDNSRMNIGIFFAIIAVFVIWFLLTKTTLG
                     FEIRSVGLNPTASDYAGMSAKRTIILSMIISGALAGLGGAIQGLGTFQNVYIQSGNLD
                     IGFNGMSVALLASNSPLGIPLAAFLFGVLSVGAPGMVRAQIPPELINVVTASIIFFIG
                     VKFIFEQLLKSRNKAKGAK"
     gene            6848..7801
                     /locus_tag="U1404_001434"
     CDS             6848..7801
                     /locus_tag="U1404_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348383.1"
                     /translation="MNVSILALLISQMLIYSAPLIFTSLGGVFSERGGIVNVGLEGIM
                     VIGAFAGVVFNIEFAGTFGNATPLLAIIVGGLAGVVFAAIHAMATINFRADHVVSGTV
                     LNLLAPALGVFLVKVIYNKGQTDSITESFGKFSFPILADIPIIGEIFFKNTSLMGYVA
                     IATAFLAWFILYKTKFGLRLRSVGEHPQAADTLGINVYAMRYAGVLIAGFLGGVGGAV
                     SAQSVNINFSATTIVGSGFIALAAVIFGKWNPIGAMLASLFFGLSQSLAVVGGQLPGL
                     KDIPTVYLQIAPYLITVIALSAFFGKAVAPKADGINYIKSK"
     gene            7945..>8090
                     /locus_tag="U1404_001435"
     CDS             7945..>8090
                     /locus_tag="U1404_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348384.1"
                     /translation="MRRLVLNIAMSLDGFIARKDGSYDWIDGHGTDKYDTVSQFDNQK
                     FFRG"
BASE COUNT         2331 a         1368 c         1909 g         2482 t
ORIGIN      
        1 caatatgtat tacgaaaaaa atcctacaat agcacatgat attcatgaaa tccacgtaaa
       61 cttactagac accccaatgt ctttcatgac agatgcaggt gtttttagca agaagatggt
      121 tgattatggt agtcaagtgc ttttaaaaac ccttcatttt gaaaaagggg catcggtgtt
      181 ggatgttggt tgtggttatg gaccaattgg tttgacactt gctaaggtgt ttaacaccaa
      241 gacaacactg attgatatta atagcagagc tttggattta gctacaaaaa atgcagagag
      301 gaatggtgtt atcgctaaaa tttatcaatc caatatctac gaaaacgtgg acgaaacatt
      361 caatcatatt gtttcaaatc cacctattcg ggccggaaaa tcggttgtac atgaagtaat
      421 tgctggggcc tttcaacgct tagaggcaca cggaaccttg tccattgtca ttcaaaagaa
      481 acaaggcgca ccgagtgcta aagctaagat ggaagaggta ttcggcaact gccagattat
      541 aaagaaagat aagggttact acatccttga aagtgtgaaa gaatgagagc agttgattta
      601 attcaaaaaa agcgtgatgg cttagaacta tcgtctgaag aaatcaaatg gttgattgat
      661 ggatatgtag ctgggacagt accggattat caaatgtcag ccttagcgat ggcgatttat
      721 tttaaaggga tgtcaacgcg tgagatttct gatttgacga tgtccatggt tgtaacgggt
      781 gaacagattg atttgtctgc aattccaggc atcaaggtag ataagcattc tacaggtggt
      841 gtcggagata aggttacact cattttagcg ccattggtag caagttttga tattccagtt
      901 gcaaagatga gcggtcgtgg gcttggtcat actggtggaa ccttggataa gttagagtca
      961 atcaaaggat accagattga agttagtcaa gcagatttca tcaagcaagt tcaagatact
     1021 ggtgttgcag ttattggtca gtcagataat cttgtcaaag ctgataaact actctatgcc
     1081 cttcgtgacg tgacagcaac cgttgacatt attccgctga ttgccagctc agtaatgtct
     1141 aagaaaattg ccgcaggtgc ggatgcgatt cttctagatg tcacggtggg agaaggtgcc
     1201 ttcatgaaga ctgttgaaga agcacgggtt ctagctcaaa ctatggtgga tcttgggaaa
     1261 gcggttggtc gtaagacagt tgctgtttta actgacatgt ctcaaccagt tggaacttcg
     1321 attggaaatc gtttggaaat tttagaggct attgaaattt tacagggtaa aggtcgagaa
     1381 gatgttaccg aatttatctg tgaactagcc caaattatgt tggggcttgc taatgttgag
     1441 aaaagcattg aagaagtacg tcaacatatt gacaatggtg cagcattgaa gaaatttgaa
     1501 gagatggtcc gtgctcaagg tggtgactta gaagatttat atcgtccagt tcaggttaca
     1561 cagcaagttc cagttcttgc ggaagaggat ggctatattg tgggacttcc tgctttggaa
     1621 tttggtctct ttgcaatgaa acttggtgca ggtcgtgcag tcaagactga caatttagat
     1681 tatgaaacag gtattgtttt ccataagaaa gtgggggaag ctgtttctaa aggcgaacaa
     1741 atcgcaacga tttatgccaa tgaaaatatt tcggaaaaca tgcttacaaa tttccgaaaa
     1801 aatgttaaaa tagataaaga aagtgtaaaa acgaaagaaa tcatcgagat tatttcttaa
     1861 tgtacggaga aagctatgaa attgaataaa tatattgacc acacaatctt gaaacctgag
     1921 acaacacaag agcaggttga aaaaatttta gcagaagcaa aagaatatga ttttgcaagt
     1981 gtctgtgtta acccaacttg ggttgcttta gcagctgaaa gcttgaaaga tagtgatgta
     2041 aaagtttgta cggttattgg tttccctctc ggagcaaaca cacctgctgt aaaagcgttc
     2101 gaaacaaaag atgcaatttc aaatggagca gatgagattg acatggttat caatatcggt
     2161 gctctgaaaa ctggaaatta cgatttggtt ttggaggata ttaaagctgt tgtagcagca
     2221 agtggtgata aactagtcaa agttatcatc gaagcatgcc ttcttactga tgatgagaaa
     2281 gtgaaagctt gtcaattatc tcaagaagct ggtgcggact atgttaaaac atctacagga
     2341 ttttctacag gcggtgccac agtagcggat gttgccttaa tgagaaaaac agtgggtcct
     2401 gacatgggag tgaaggcttc aggtggtgca cgttcgtatg aagatgccat tgcctttatc
     2461 gaagcaggag cgtctcgtat tggtgcgtca tcaggcgtgg caatcatgaa tggagcacag
     2521 gcggatggag actattgatt taattgaatt agctgtaaaa aacagtcaaa aagcatacgt
     2581 accgtactca aagtttccag ttagtgcagt tcttgtagct gagactggag aaatatttac
     2641 aggtgtaaac attgaaaatg caagttttgg tttgaccaat tgcgctgaaa ggacagctat
     2701 tttcaaggct atttctgaag gtgtgaaaga tttttctgaa atcgtaattt atggtaaaac
     2761 agaaaaacca atatctcctt gtggagcttg tcgccaagtt atggcagaat tttttgataa
     2821 ggatttaaaa gtgaccttgg tcgctaaaga taaatcgaca gtcgagacga cagtcgggga
     2881 attactacca tattccttta cagacttaac atagtctgta tgacagtcat ttgactgtag
     2941 caatattact ctgcaacaat ttagttgcaa aaagattttt aggagggttc agaaatgaac
     3001 aagaaacttg ttggacttgg tctagcagct gttgcggctg tatctttggc tgcatgtggt
     3061 aaccgtgctt caaaaagcag tagctcagaa gcatcttcat cagcggacac atctgtgaaa
     3121 gctgctatcg ttactgacat tggtggtgtt gatgaccgtt catttaacca atctgcttgg
     3181 gaaggtcttc aagagtgggg taaagcagct agtctttcca aaggtaatgg ctacgattac
     3241 ttccaatcag ctagtgaatc agattatatc acaaaccttg attcagctgt tgctggtggt
     3301 tacaatcttg tgttcggtat tggttttgcc ttggagagtg cgattgctga ggttgcacca
     3361 aataatccta atacacacta tgtaatcgtg gatagtgttg ttccagatca agacaatgta
     3421 gttagcgtag gtttcgcaga ccatgaagca tcatatcttg ctggtgttgc tgcagctaaa
     3481 tcaactaaaa caaatcacgt aggtttcatc ggtggtatgg aaggtgttat catcgatcgc
     3541 tttgaagctg gtttcgttgc tggtgctaag tctgtaaaca aagacatcaa gattacagtt
     3601 gactatgcag gttcatttgg tgatgctgct aaaggtcaaa ctcttgcagc tgctcaatat
     3661 gctgcaggtg cagatgttat tttccacgct tctggtggta ctggtaacgg tgtatttgca
     3721 gctgctaaag cagaaaacga aactcgtaat gaagcagata aagtttgggt aatcggtgtt
     3781 gaccgtgacc aatcagcaga aggtacatac acttctaaag atggtaagtc ttctaacttt
     3841 gtattggctt caacattgaa acaagttggt acttcggtta aagatattgc aactaaggca
     3901 gctgcaggtg atttccctgg cggtcaagta cttcaattct cattgaaaga taaaggtgtt
     3961 gaattggcag aaactaatct ttcagaagat gcttctaaag cagttgcaga tgctaaacaa
     4021 gcaattttgg atggcaaagt agaagttcct gaaaaacctt aatgaatttc ttttcgacaa
     4081 ttccgattcg gcgacccgac ggggcgccgt tttcgggctg agatttttct cagtaaagcc
     4141 tatcagctat ggtaggtttt actgacaaaa atggtatagt tgatgaagag tttttaagta
     4201 ctcaaagtag tactgaagaa ttttcagaag gctatagtca gaaaggataa tagattatga
     4261 ctaaggatta tgtcattgaa atgcgcaata tcactaagat atttggtgaa tttgtagcaa
     4321 atgaccacat caatttgaat gtcagacgtg gtgaaatcca tgcccttctt ggtgagaatg
     4381 gtgcgggtaa atctactctg atgaacatgc ttgctggctt gttggaacct acaagcggtg
     4441 aaattgttat caacggtcaa tccgtgaaga ttgactctcc atccaaagca gcccaattgg
     4501 gtatcggtat ggtgcaccaa cactttatgt tggttgatgc tttcactgtt gctgagaaca
     4561 tcattcttgg ttctgaaacc accaaaggtg gcgtgattga ccttaaaaaa gctatcgcag
     4621 aaattaaaga actttctact aaatatggtc ttgaagttga tccaactgca aaggttgcag
     4681 atatttctgt gggtgcacag caacgtgtag aaatccttaa aacactttac cgtggagccg
     4741 accttttaat ttttgatgag ccgacagctg tattgacccc tgcggaaatt gcagagctct
     4801 tgaaaattat gaaagccttg gttgaagaag gtaaatctat tattttaatt acgcacaaat
     4861 tggatgaaat tcgtgcagtt gccgatagtg taacagttat tcgtcgaggt aaatcaatcg
     4921 aaacagttgc cgttgaagga gcaacaaacc aagatttggc tgagtggatg gttggacgtt
     4981 ccgtttcctt taaaacagag aaagttgaag cgagtcctaa agaagtcatt ttgtcaatta
     5041 aggatttggt tgtcaatgaa aaccgtggta ttccagcagt taagggcttg tcgcttgatg
     5101 ttcgagcagg tgaggttgtt ggtattgccg gtatcgacgg aaacggtcaa agtgagttga
     5161 ttcaggcaat cactggttta cgtaaggtaa aatctggctc aatcactatc aaaggtgagg
     5221 aagtagttgg taaaactcca cgtaaaatta cagaaatgca agtgagccac gttcccgaag
     5281 atcgtcatcg tgatggactc gttcttccga tgactgttgc tgagaacttt gcacttcaaa
     5341 cttactataa agaaccgatt tcaaaaaatg gtatcttgaa ctataatatc attaatgaaa
     5401 aagcacgcgc gttaatggaa gaatttgacg ttcgtggggc gagtgaactc gttccaatca
     5461 aggctctttc aggcggtaac cagcaaaaag ctattattgc gcgtgaaatc gatcgcaacc
     5521 cagacctttt cattgttagc caaccaacac gcggtttgga tgttggtgct attgagtata
     5581 ttcgtaagcg tctcattgca gaacgtgata agggtaaggc tgttcttgtt gtcagcttcg
     5641 aattggatga aattttggat gtatcagata gaattgctgt tatccatgat ggtgtcatcc
     5701 atggtattgt tgaacctgct aagaccaata aacaagagtt aggtgtcttg atggcaggtg
     5761 gacatattga gaagggagaa gaacatgctt aataaatata agaatttggc ccttccatta
     5821 atggctgtgg tcagtggtat cctacttgga gcgattgtca tgcttgtttt tggctacgat
     5881 ccaatttggg gctatgaaga gttattctat tcagcttttg gtaatatcaa atcaattggt
     5941 gaaattttcc gtgcaatggc accacttgtt ttcactgctc tcggtttcgc agtagctagt
     6001 cgtgcaggtt tcttcaacgt tggtttgtct ggtcaggcct atgttggttg ggtttttgct
     6061 ggatggtttg ccttggcgaa tcctgactta ccacgtccag ttttgatttt gggaacagtc
     6121 ttgattgcta tgttggcagg cggtattgct ggagctattc caggtattct acgtgcctat
     6181 ttgggaacaa gtgaagttat cgttacgatt atgatgaact acatcttact ctattcatgt
     6241 aactatatca ttcgtgatgt atttgctgat agtttgatga agaatacaga ctcgacagtt
     6301 aacgtgtcag caaatgcctc ttaccaaaca gagtggctcc gtgcattgac agataactca
     6361 cgtatgaata ttggtatttt ctttgccatt attgcagttt ttgtgatttg gttcctattg
     6421 accaaaacga ctcttggttt tgagattcgc tcagtggggc ttaacccaac agcatcggat
     6481 tatgcgggta tgtctgcgaa acgtacgatt attctatcta tgattatttc aggtgctctt
     6541 gcgggtcttg ggggagctat ccaaggtttg ggtactttcc aaaacgttta tatccaaagc
     6601 ggtaacttgg atattggttt taatggtatg tcagtagcgc ttttagcttc taattcaccg
     6661 ttaggtattc cattggctgc ctttctattc ggtgttcttt ctgtcggtgc cccaggtatg
     6721 gtacgtgcac agattccacc tgaattgatc aacgttgtta cggcatcaat cattttcttt
     6781 atcggtgtga aatttatttt tgaacaatta ttaaaatcta gaaataaagc gaaaggagcg
     6841 aaataagatg aatgtttcaa ttcttgcctt actcatttcg caaatgttga tttattcagc
     6901 acccttaatc tttaccagtc ttggaggagt tttctctgaa cgcggtggta ttgtaaacgt
     6961 tggtctagaa ggaatcatgg ttatcggtgc ctttgctggt gttgttttca atatcgaatt
     7021 tgcagggaca tttggtaatg ctactccatt attagctatt attgtaggag gtcttgctgg
     7081 tgttgtcttt gcagctattc atgcgatggc gacgattaat ttccgtgcag accacgttgt
     7141 atcaggtacg gtgttgaacc ttttggctcc agcattggga gttttcctag tcaaggttat
     7201 ctataataag ggtcaaactg atagtattac tgaatcattt ggtaaatttt cattccctat
     7261 cttggcagat attccaatca ttggtgaaat tttcttcaaa aatacaagct tgatgggtta
     7321 tgtagctatt gcaacagcat ttcttgcttg gttcatcctt tataaaacca agttcggttt
     7381 gcgccttcgt tcagtaggtg aacatccgca agcagcggat actttgggaa tcaatgtcta
     7441 cgctatgcgt tatgcaggtg tgttgattgc tggtttcctt ggtggtgttg gtggagctgt
     7501 aagtgctcaa tcagtgaata tcaacttctc tgcaacaaca atcgtaggtt caggtttcat
     7561 cgctctagca gctgtaattt ttggtaagtg gaatccaatt ggcgctatgc ttgccagtct
     7621 attcttcggt ctttcgcaaa gtttggcagt agtgggtgga caattaccag gattgaaaga
     7681 tattccaacg gtttatcttc aaattgcacc atatttgatt actgttattg ctctgtctgc
     7741 tttctttggt aaagcagtcg ctcctaaagc agacggtatc aactatatca aatctaaata
     7801 aaaaggtcca gtggaccttt ttatcatgtt ctttgctgta caggaaatga ataattgtcc
     7861 tattcaaagg aagaggagtt atagggactt ttggttgaga atagggagaa tagcttgtca
     7921 ctaaggtatg aaatgaggct aattgtgaga cgattggtgt taaacattgc aatgagttta
     7981 gatggattta ttgcacgtaa ggatggaagc tacgattgga ttgacggaca tggtaccgat
     8041 aaatacgata cggtctcaca gtttgataat caaaaattct ttagaggctg
//
LOCUS       DASGCC010000090         7938 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.090, whole genome shotgun sequence.
ACCESSION   DASGCC010000090 DASGCC010000000
VERSION     DASGCC010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7938
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.090"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            148..687
                     /locus_tag="U1404_001436"
     CDS             148..687
                     /locus_tag="U1404_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEM5348385.1"
                     /translation="MKTTSIKSLVYIAIGTALISTLSQISLSIGPVPFTLQTLAIGLV
                     ACLYKPKEAITSVSLYLVLGAIGLPVFSGFSGGFAALTGPTSGFLWGFLLYTIITSAL
                     TKSDSSPVTIFLACLLGTSICFLLGCFVFKLVLGASWTDSIGWTVLPFILPDLAKITL
                     VMICHRLLQPVIKKEAYFA"
     gene            complement(699..914)
                     /locus_tag="U1404_001437"
     CDS             complement(699..914)
                     /locus_tag="U1404_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbC family protein"
                     /protein_id="HEM5348386.1"
                     /translation="MAEFTFEIEEKLLVLSENDKGWTKELNRVSFNGAPAKYDIRTWS
                     PDHTKMGKGITLSNEEFQVLLDAFANK"
     gene            1006..1329
                     /locus_tag="U1404_001438"
     CDS             1006..1329
                     /locus_tag="U1404_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348387.1"
                     /translation="MKRFLEVIFEQITVFLEHGKAPKSIEPDSKEEIKNNLELALYKK
                     AAVHVIYGDRSFTGDIVKYDTDCQRIIMKNFKRQVTSIIKIEDIKKVTLVPDSIKTSQ
                     QQTKG"
     gene            complement(1542..2828)
                     /locus_tag="U1404_001439"
     CDS             complement(1542..2828)
                     /locus_tag="U1404_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015057417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM5348388.1"
                     /translation="MSKTLKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRA
                     GNFTMDEMREGIEYAHARGAKVYVAANMVTHEGNEEGAGAWFRELRDMGLDAVIVSDP
                     ALIVICATEAPGLEIHLSTQASSTNYETFEFWKELGLTRVVLAREVTMDEVAEIRKRT
                     DVEIEAFVHGAMCISYSGRCVLSNHMSKRDANRGGCSQSCRWKYNLYDLPFGEERRSI
                     KGEIPEEFSMSAVDMCMIDHIPDMIENGVDSLKIEGRMKSVHYVSTVTNCYKAAVDAY
                     LESPEKFEAIKQDLIDEMWKVAQRELATGFYYSPPSENEQLFGARRKIPEYKFIAEVV
                     AFDKETMTATIRQRNVINEGDQVEFYGPGFRHFETTIQDLHDSNGEKIDRANKPMELL
                     TIKLDREIYPGDMIRACKSGLINLYQEDGQSLTIRA"
     gene            complement(3006..3935)
                     /locus_tag="U1404_001440"
     CDS             complement(3006..3935)
                     /locus_tag="U1404_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM5348389.1"
                     /translation="MEKIIITATAESIEQVKELLVAGVDRIYVGEADHALRIPTNFTY
                     DELREIAELVHSAGKELTVAANALMHQDMMDNIKPFMELMREIKVDYLVVGDTGIFYI
                     NKRDGYNFKLIYDTSVFVTSSRQINFWKDHGAVEAVLAREIPSEELFDIAKNLEMPAE
                     ILVYGASVIHHSKRTLLQNYYNFTKADETDLSRGRGLFLAEPSDPDSHYSIFEDKHGT
                     HIFINNDIDMMTKLSELDEHGYHNWKLDGIYCPGQNFVEIVKLFVQARDLIEKGEFTY
                     DQAFLLDEQVRKLHPAERGLDTGFYEFDRNKVK"
     gene            4096..4410
                     /locus_tag="U1404_001441"
     CDS             4096..4410
                     /locus_tag="U1404_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3270 domain-containing protein"
                     /protein_id="HEM5348390.1"
                     /translation="MALRHYQSHEYQYEEYIPKEKKANFQTYQAKNTNKERLKELLFF
                     VNIAFFSLITVIASYVYLSVGIPVFVAIILASATGFLGLRLVQIGLKKKFKPKQVIRK
                     NE"
     gene            complement(4432..4842)
                     /locus_tag="U1404_001442"
     CDS             complement(4432..4842)
                     /locus_tag="U1404_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5348391.1"
                     /translation="MNIKEVSDVTGLSADTIRYYERIGLIPKIARKSSGVRNFSESDV
                     AILEFIRCFRSAGMSIERLIEYMGLVQAGDSTVEARIDLLKEEREELRSRLSEIQQAL
                     DRLDYKIENYQTILRGAENQLFTDGGSSFKKGRG"
     gene            complement(4942..5118)
                     /locus_tag="U1404_001443"
                     /pseudo
     CDS             complement(4942..5118)
                     /locus_tag="U1404_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104139.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            complement(5249..6076)
                     /locus_tag="U1404_001444"
     CDS             complement(5249..6076)
                     /locus_tag="U1404_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5348392.1"
                     /translation="MASQIRHDLSLLVFFLITGLLLLLYPTVSDYWNSHYQSEAVATY
                     SEKLLDISKEEKQKILENVSAYNSTLEKGTIPNLNIDSVALKKYDSILNITDTGIMGY
                     VEIPKLQTMLPIYHGTDDAVLQVAVGHLAGTSLPIGGQGSHAAISGHRGLPSAKLFSD
                     LDQLAIGDTFMIQVLDNTLTYEIDKIITVTPDDVSPLMIDPNEDFVTLVTCTPYGVNS
                     HRLLVRGHRIENQLLARQVVSEGSIVKPILVSPFIALCLLGLLWSLFFVKKEVNLFM"
     gene            6044..6433
                     /locus_tag="U1404_001445"
                     /pseudo
     CDS             6044..6433
                     /locus_tag="U1404_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(6434..6820)
                     /locus_tag="U1404_001446"
     CDS             complement(6434..6820)
                     /locus_tag="U1404_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348393.1"
                     /translation="MKILWERLFKFVQQCFREKKTAKITMALSIIMAFGISYLLILPA
                     ITLETDSQESVLQSVYNQPTTVEQPVQEEQAESQLAQVQSAGSLFAEHENITVQVNYE
                     EHTFEQPVRLQVLPSEDSTKYIGLVR"
     gene            complement(6839..7441)
                     /gene="lepB"
                     /locus_tag="U1404_001447"
     CDS             complement(6839..7441)
                     /gene="lepB"
                     /locus_tag="U1404_001447"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5348394.1"
                     /translation="MATNKNKDYVTISDLPSISIMSEELDKIRYKKRYLETLKNTIFT
                     LVTVVALAVLIAMLWLPVLHIYGSSMSPTLKAGDMVATVKTNTLSTGDMVAFYYNNKV
                     LVKRVVATSGQWVNIDEQGNVYANGKTLDEPYVKDKAYGQTDIKLPYQVPEGQYFVMG
                     DHRSVSIDSRNTAIGSIGEEQLVGKLTFRIWPFHKMGVIK"
     gene            complement(7431..7724)
                     /locus_tag="U1404_001448"
     CDS             complement(7431..7724)
                     /locus_tag="U1404_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HEM5348395.1"
                     /translation="MQKTLEKLKRSELFELLVEQAKEIESYQAKLVDLEKRIEYREAV
                     LGEIGSIAEASLAVTRIFEEAQLAANIYLEQVQKVTHKQSDNCEIGRTDEDGD"
BASE COUNT         2316 a         1690 c         1378 g         2554 t
ORIGIN      
        1 aatttgttgt ttttttacta tataagtttc ttattagctg ttataaaaat cacctataga
       61 gttgttacag ccgatgagag agcattgact ttcttatcaa atctcactat aatttttgtt
      121 aaccataaaa ttttaagagg ataacaaatg aaaacaactt ctatcaaatc acttgtttat
      181 atcgctattg gaacagcctt aatttccacc ctttcacaaa tcagtctgtc tatcggacct
      241 gtaccattta cattacaaac cctagctatc ggcttagtag cttgtctata caaacccaag
      301 gaggcaatta caagtgtcag cttatatcta gttcttggtg ctatcggttt acctgttttt
      361 tctggttttt ctggtggctt tgctgcactc acaggaccga cctcgggctt tctatggggg
      421 tttctactct acactatcat cacttctgcc ctcactaaat cagactcctc accagtcaca
      481 atttttctag cctgcctact tggaacaagt atctgtttcc ttctcggctg ttttgtattt
      541 aagctagttt taggtgccag ttggactgac tctatcggat ggactgttct gcctttcatt
      601 cttcctgatt tagctaaaat tacactagtc atgatttgtc atcgtttatt gcaacctgtt
      661 atcaaaaaag aagcctattt tgcttaggct tcctttgttt atttattggc aaacgcatcg
      721 agtagaactt gaaattcctc attactaagt gtgattcctt tccccatctt ggtatggtca
      781 ggactccagg tacggatgtc atacttggct ggtgcgccat taaaagatac tcgattaagc
      841 tccttggtcc atcctttatc attttcagat aagaccaata atttttcttc aatttcaaat
      901 gtaaattctg ccatttgtta cctcctcact tatctattcg aaaaagcttg tcatttttat
      961 aaaaattaga taatataatt atatcaagtt tgaaaggatt atgccatgaa gaggttttta
     1021 gaagttattt tcgagcagat caccgtcttt ttagaacatg gcaaagctcc taagtctatt
     1081 gagccagata gcaaggaaga aatcaagaat aacttggagc tggctttata taaaaaagct
     1141 gcagtccatg tcatctatgg cgatcgtagt ttcacaggtg acattgtaaa atatgatacc
     1201 gattgccaac ggattatcat gaaaaatttc aaacgtcagg ttaccagcat tataaaaatc
     1261 gaggacatca aaaaagtcac cttggttcca gatagcatca agacttctca acaacaaaca
     1321 aaaggctgaa atttcagcct tgcagattga agaaaaagtc cattttggac aattttcttc
     1381 aatctttttt ctttatgttg aaaattaaaa actctcagaa acgccgaaat atcaatgttt
     1441 ctaagagttt aatgacttgc tatctgtcgc aaacttctca attttttata tttttaagag
     1501 tttatctacg ttctgaggct gaaatttcag cctttttatg tttatgcacg aatagttaga
     1561 gattgcccat cttcttggta gaggttgatg aggcctgatt tgcaggcacg aatcatgtca
     1621 ccaggataga tttcacggtc cagcttaata gttaagagtt ccatcggctt gttggcgcgg
     1681 tcaatctttt ctccatttga atcatgcaag tcctgaatag tcgtttcaaa atgacggaaa
     1741 cctggtccgt aaaactctac ttggtcacct tcgttgataa cattacgctg acgaatggtt
     1801 gcagtcatgg tttccttgtc aaaagccact acttcggcga tgaatttgta ttctggaatc
     1861 ttacggcggg ctccaaagag ctgctcattt tcactcggcg ggctatagta gaaacctgtc
     1921 gccaattcac gttgggcaac cttccacatc tcatcaatca ggtcttgctt gattgcttca
     1981 aacttttctg ggctttcaag ataggcatct accgcagcct tgtagcagtt ggtcactgtt
     2041 gatacgtagt ggacagattt catacggcct tcgattttca ggctatcgac cccattttca
     2101 atcatatctg gaatatggtc gatcatacac atgtccactg cagacatgga gaactcctct
     2161 gggatttccc ccttaatcga acggcgttct tcgccaaatg ggaggtcgta gagattgtac
     2221 ttccaacggc aagactggga gcagccaccg cggttagcat cgcgtttgct catgtggtta
     2281 gagagaacgc agcgacctga ataggaaata cacatagctc cgtgaacaaa ggcctcaatc
     2341 tcaacgtctg tccgtttacg gatttcagcc acctcgtcca tagtcacttc gcgggccagg
     2401 acgacacgag tcaagcccaa ttccttccag aactcgaagg tctcatagtt ggtggaagaa
     2461 gcctgggttg acaggtgaat ttcaaggcct ggcgcttcag tagcacagat aacaataaga
     2521 gccgggtcag atacgataac ggcatccaag cccatgtcac gcaattcacg gaaccaggct
     2581 cctgctcctt cttcattacc ttcgtgggtg accatgttgg cagccacata gaccttggca
     2641 ccacgggcat gggcatattc aatcccttcc cgcatctcgt ccatggtaaa gttaccagct
     2701 cggctacgca gaccgtaggc ctggccgcca acaaagaccg catcagcacc ataatcaatg
     2761 gcaaccttca atttctccaa agtcccagca ggtgacaaga cctcgggacg ctttaatgtt
     2821 tttgacatca tgtaaaatct cctctatttg cgacggtttc cacatgaaac gatacttttc
     2881 catgtggaaa cctagtgcag agtttagaaa atcgctcaaa ggcgttttcg tgctctgacc
     2941 ttacataata agtgacagag ctaactctgt caggttaaag taaataaatt gtgctataaa
     3001 tattgttatt taaccttatt gcggtcaaat tcgtagaagc ctgtatctaa gccacgttca
     3061 gctggatgga gcttgcgtac ctgctcatcc aaaaggaagg cctgatcata agtgaattcg
     3121 cctttttcaa tcaaatctct tgcttgaaca aaaagcttaa caatttcaac aaagttctgt
     3181 ccagggcaat agataccatc aagtttccaa ttatgataac catgttcatc taattctgac
     3241 agcttggtca tcatatcaat gtcattgttg ataaagatat gggtaccgtg cttgtcctca
     3301 aagatagaat agtggctatc tgggtcgctc ggctcagcta agaaaagtcc gcgtccacgt
     3361 gataaatctg tctcatcagc ctttgtaaaa ttgtaataat tctgtaacaa ggttcgttta
     3421 gaatggtgaa taacagaggc gccgtagacc aagatttccg ctggcatttc caagttctta
     3481 gcaatatcaa agagttcttc tgatggaatc tctcttgcca aaacagcctc tactgctcca
     3541 tgatctttcc aaaagttaat ctgacgactg gaagtcacaa agacagatgt atcatagatt
     3601 agcttgaaat tgtagccatc acgtttattg atatagaaaa ttccagtatc tccgacaacc
     3661 agataatcaa ccttgatttc cctcattagc tccataaatg gtttgatatt gtccatcata
     3721 tcttgatgca tgagggcatt ggcagcgacc gtcaattcct tcccagcgct atgaactagc
     3781 tctgctattt ccctgagttc atcataggta aaatttgttg ggatgcgaag agcatggtca
     3841 gcttcaccta cataaatgcg gtcaacgcct gctacaagca gttctttgac ctgctcaata
     3901 ctttcagctg ttgctgtaat gataattttt tccataaaga taattatatc aaaaagagaa
     3961 atatctgata agtgactacc tgtattttaa tgttcagact tttctaatct ttctcttgta
     4021 acattattgt aatataaatg acataaaaat tcagcaatgt tatggtattc tttaaggagc
     4081 agaaaaggag acgatatggc attaagacac tatcagtccc atgagtacca gtacgaagag
     4141 tatatcccga aagagaaaaa ggctaatttt caaacctatc aggcaaaaaa taccaataaa
     4201 gaacgtctaa aggaattgtt gttttttgtt aatatcgcat tttttagttt gataacagtc
     4261 atcgctagtt atgtctatct atccgtaggc attcctgttt ttgttgccat catattggca
     4321 agtgcgacgg gttttcttgg actacgtttg gttcaaattg ggctaaagaa gaaatttaaa
     4381 cccaaacaag ttataagaaa aaatgaataa tgaagtataa aggcagagaa gttatcctct
     4441 gccttttttg aatgaactac cgccgtctgt gaacaattga ttctctgcac ctcttaatat
     4501 agtctggtaa ttttctattt tataatctaa acgatctaga gcttgctgaa tttccgacaa
     4561 gcgtgaccgc agttcttccc gttcctcttt tagtaaatca atccgagctt ccactgtact
     4621 atctcctgcc tgcaccaagc ccatatactc aatcaagcgc tcaatagaca taccagcact
     4681 cctaaaacag cggataaatt ccaaaatggc tacatcactt tccgaaaagt tccttactcc
     4741 agaagatttt cttgcaattt tgggaataag tcctatccgc tcatagtagc gaatggtgtc
     4801 tgctgataga cctgttacat cactaacttc tttgatattc attccaggct cctttctttg
     4861 ttttcgctta ttatacacct tgaagtccac tccaggtcaa gtcattattt aaaaaatctg
     4921 agtctcctca gatttgccat cctataaata ctcgcccttg acaacaaaga aggtgccacg
     4981 aatttcgcca gctagtttgg agcgttggcg ggcaaactta aatttacctt caaattcctt
     5041 aggaatgtca atgccgtctg acaatttgaa tccgacagct cgcttgccac ctttttctag
     5101 cgtatagagg acattgacat atcgtcattt ggtttatctt ctatttcacc ttttggatga
     5161 ttgggagttg gaaaaatctc cctttcctaa gcttaaaagc taaagaacaa agtcgaatag
     5221 tttgacattc tttgcgatac tatctaagtc acataaacaa atttacttct ttttttacaa
     5281 aaaataaact ccaaagtagt cctaataaac ataaagcaat aaaaggagaa accagtatag
     5341 gttttacaat tgatccttct gagactactt gcctagcaag tagttgattt tcaattcgat
     5401 gacctctaac taataatcgg tggctattaa caccataagg tgtgcaagtc acaagggtta
     5461 cgaaatcctc attcggatct atcatcaaag gagatacatc atctggagta accgtaataa
     5521 ttttatcaat ttcgtatgtc agagtgttat ctaaaacttg tatcataaat gtgtccccta
     5581 tagccagctg atctaaatca gaaaacagtt ttgcagaagg caatccccga tgtcctgaaa
     5641 tagcagcgtg acttccctga ccgccaatgg gaagggaagt cccagcaagg tgacctactg
     5701 ctacctgcaa tacggcatca tccgttccgt gataaatagg taacattgtc tgcaatttag
     5761 gaatttctac atagcccata ataccagtat ctgtgatatt taaaattgag tcatactttt
     5821 ttaaagctac actgtctata tttaaattag gtattgtccc cttttcgagc gtgctattat
     5881 atgcactgac attttctaaa attttttgtt tttcttcttt tgaaatatcc aataatttct
     5941 cagaataagt agctactgct tctgattgat aatgtgagtt ccaataatca cttactgttg
     6001 gatataataa caataatagg ccagttatta agaaaaagac tagcagactc aaatcatgcc
     6061 tgatttgact agccatcgtg cttgtcaatt ggctttttca gatggtcata cgcatgattt
     6121 tacccttttt aaggagagta ttggctatag tttgccccaa aatacccttg ctttcgtaga
     6181 tttagggtat ttaggcatct tgaaatttca cgaaaatacc tttattcctg ctaagcattc
     6241 taaacatcac ctcttaaccg aagaggatag acggttgaat cgagagatag ctaaaatccg
     6301 tattgaagtt gaacacttta atgccaaatt taaaaccttt aaaatcatgg cacagcccta
     6361 tcgtaatcgt agaaaacggt ttgaattaag aactgagttg atttgtggta tcatcaacca
     6421 tgagatgatg tagttaccga acaagtccaa tatattttgt actatcttct gagggtaaaa
     6481 cctgtaaccg aactggctgt tcaaatgtat gctcctcata gttaacttgt acagttatat
     6541 tttcatgttc agcgaataag cttccagcag attgaacctg tgctaactgt gactccgcct
     6601 gttcttcttg aactggctgt tctactgttg ttggctgatt atagactgat tgcagaacac
     6661 tctcctgact gtctgtctct aaagtaatgg ctggtaaaat cagcaaatat gatattccaa
     6721 aagccataat tattgacaac gccatagtta tttttgcagt ctttttctct cgaaagcatt
     6781 gctgaacaaa tttaaacaat ctttcccata atattttcat gttttatatc tccttccttt
     6841 atttgattac tcccatttta tgaaatggcc atatccgaaa ggttaacttt ccaaccagtt
     6901 gctcctcacc aatcgaccca atagctgtat ttctagaatc aatagataca ctgcgatgat
     6961 ctcccattac aaaatattga ccttctggaa cctggtacgg tagtttaata tccgtttgac
     7021 cataggcctt atctttaaca tagggttcgt ctaatgtttt tccatttgca taaacattcc
     7081 cctgctcatc tatatttacc cactgaccag aagttgctac tactcttttt accaaaacct
     7141 tattattgta gtagaatgca accatatctc cagttgaaag tgtatttgtc ttcacagttg
     7201 ccaccatatc acctgctttc agagtaggag acatggaact tccataaata tgtagaactg
     7261 gcaaccataa catggctatt aatactgcaa gtgcaacgac agtaacaagc gtgaaaatag
     7321 tattttttaa tgtctctaaa taccgctttt tatatcgtat tttatccagc tcctctgaca
     7381 ttattgatat actgggtaaa tctgatatgg taacataatc cttattttta ttagtcgcca
     7441 tcctcatctg ttctccctat ttcacaatta tcagattgtt tatgtgtaac tttttgaact
     7501 tgttcaagat aaatatttgc agccaattgt gcttcttcaa aaatcctagt aactgctaga
     7561 gacgcctccg ctatcgaacc aatttctccc aaaaccgctt cgcgatactc aattcttttt
     7621 tccaaatcta ctaattttgc ttgataagac tctatttcct ttgcctgctc aaccaagagt
     7681 tcaaataatt cagaacgctt cagtttttct aaggtctttt gcatttaaca ttgcttcttc
     7741 ctctctcctt tttgcttata ttgctttcgc tacaaaatat atgcttattt acttctaaat
     7801 atcacctatc aatcaaaaca tatacatttt tgtgaatata atatgatcaa attagcctgt
     7861 acgtgatacc aaaccaatcc ttagtttgtc aacaatgcca atttcttaaa aaacacaaaa
     7921 aaatcagaac tttttgca
//
LOCUS       DASGCC010000091         7840 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.091, whole genome shotgun sequence.
ACCESSION   DASGCC010000091 DASGCC010000000
VERSION     DASGCC010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7840
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.091"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..380)
                     /locus_tag="U1404_001449"
     CDS             complement(<1..380)
                     /locus_tag="U1404_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348396.1"
                     /translation="MNVAIIILVAIFVILLLLLLIYVALFQIWLKSSRQIHEYDEDII
                     RDYLCKLAESFEYSSTQIPYGRARWFILGSKDFVCTVNDVENLEIFGYSPIRSKIDEE
                     FLEYGLLLTQDGFYFREQIENSNN"
     gene            complement(393..1139)
                     /locus_tag="U1404_001450"
     CDS             complement(393..1139)
                     /locus_tag="U1404_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5348397.1"
                     /translation="MATYETFAAVYDEIMDDSLYDKWTDFSLRNLPQDTKTILELACG
                     TGIQAVRFAQKGFEVTGLDLSYEMLELAQKKAEAAGVMMELAQADMMALEGVGDFDAV
                     TCYSDSLCYMSDREAVLRVFEGVHSVLNQGGTFLFDVHSIYQMEKVFAGYSYHENYED
                     FAFVWDTYEGEHEHSIVHELTFFVKDEDSQEERFIRRDEVHEERTYPIETYVELLKEA
                     GFASVEVFADFEDQAPTETSQRWFFRCKKK"
     gene            complement(1596..1955)
                     /gene="rsfS"
                     /locus_tag="U1404_001451"
     CDS             complement(1596..1955)
                     /gene="rsfS"
                     /locus_tag="U1404_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEM5348398.1"
                     /translation="MKELDLVKVVVQAADDKRAEDLVVIDVQGVTSLTDYFVIASSMN
                     SRQLEAIAENIREKVAEVGIKSSRVEGDSNGGWVLLDLGGLVVHIFSEEMRDLYNLEK
                     LWHEGSFLEVADFLEEE"
     gene            complement(1957..2466)
                     /locus_tag="U1404_001452"
     CDS             complement(1957..2466)
                     /locus_tag="U1404_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM5348399.1"
                     /translation="MKTALIVIDIQSMPVEEQPYAIEERLALWQDSLAQARQAGLEVI
                     HVRHHDQELVKGTADWEIHSIVAPLASEKIFDKTFNSAFKETRLHAYLQEKEIERLII
                     MGMATNFCIDTTIKVAFELGYKVAVIQDGTTTGYSGKLDAEDLIDHYQNIWSWNFAQV
                     DKLENIIRG"
     gene            complement(2476..2918)
                     /locus_tag="U1404_001453"
                     /pseudo
     CDS             complement(2476..2918)
                     /locus_tag="U1404_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735474.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(2921..3508)
                     /gene="yqeK"
                     /locus_tag="U1404_001454"
     CDS             complement(2921..3508)
                     /gene="yqeK"
                     /locus_tag="U1404_001454"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HEM5348400.1"
                     /translation="MIAADLTFDRQALLEKIRVAMKPARFQHVLGVEEAALALADRYG
                     CDPKKASLAALLHDYAKEVEDQVFLDLIAKYDLDKALLNWDNNIWHGVVGAYKIAEDF
                     GLEDQEIFQAIQRHTIGAGQMTLLDKVLYVADYIEPNRDFPGVDEARRIAKESLDKAV
                     AYETAQTISYLAKKGIPIYPQTLETYNGYVVWLKE"
     gene            complement(3505..4137)
                     /locus_tag="U1404_001455"
     CDS             complement(3505..4137)
                     /locus_tag="U1404_001455"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEM5348401.1"
                     /translation="MAIELLTPFTKVELEVEKKETNRKQVGILGGNFNPVHNAHLIVA
                     DQVRQQLKLDEVLLMPEFIPPHVDKKETIDEYHRYSMLKMAIAGIEGLGIETIELERR
                     GVSYTYDTMKLLKEKNPNTDYYFIIGADMVDYLPKWHRIDELVQLVQFVGVQRPRYKA
                     GTSYPVIWVDVPLMDISSSMVRSFIKQGRVPNFMVPHEVLDYIEEKGLYQ"
     gene            complement(4150..4461)
                     /gene="yhbY"
                     /locus_tag="U1404_001456"
     CDS             complement(4150..4461)
                     /gene="yhbY"
                     /locus_tag="U1404_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEM5348402.1"
                     /translation="MMLTSKQRAFLNSQAHSLKPIIQIGKNGLNDQIKTSVRQALDAR
                     ELIKVTLLQNTDENIHEVAEILEEEIGVDTVQKIGRILILFKQSSKKENRKISKQVKE
                     I"
     gene            complement(4780..5886)
                     /gene="yqeH"
                     /locus_tag="U1404_001457"
     CDS             complement(4780..5886)
                     /gene="yqeH"
                     /locus_tag="U1404_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000391231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HEM5348403.1"
                     /translation="MEELFCIGCGAQIQTLDKAVAGFTPQSALEKGLETGQLYCQRCF
                     RLRHYNEISDVNISDDDFLKLLHSVGESDALVVNVIDIFDFNGSVIPGLPRFISGNDV
                     LLVGNKQDILPKSVKTGKVTQWLTERAHEIGMRPVDVVLTSAQNKQAIKDLIEKIEQH
                     RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSYIY
                     DTPGIIHRHQMAHYLTAKNLKYISPRKEIKPKTYQLNPEQTLFLAGLGRFDFVAGERQ
                     GFTAFFDNELQLHRTKLQGASEFYQKHAGSLLVPPTSKELKEFPELVRHEFTINEKTD
                     VVFSGLGWIRVNEKAKIAAWAPKGVDVVIRKAII"
     gene            complement(5887..6414)
                     /locus_tag="U1404_001458"
     CDS             complement(5887..6414)
                     /locus_tag="U1404_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HEM5348404.1"
                     /translation="MSLENYMPDFALEKAYDVTVESLKKHGIKVVFVDLDNTLIAWNN
                     PDGTPEMRQWLHDLQDAGIPVVVVSNNKYERVKRAVEKFGIEFEAFALKPFTFGINRA
                     LKRFDVQPYEVIMIGDQLMTDIRAAKRAGLKSVLVKPLIKTDSINTQINRWRERRTMK
                     KIIAKYGAIDYKREM"
     gene            complement(6598..6972)
                     /locus_tag="U1404_001459"
     CDS             complement(6598..6972)
                     /locus_tag="U1404_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348405.1"
                     /translation="MNPLRKELRTVAVEVSDLALDYAVRLAQSLNSTLRYHNYDSLIA
                     IAKTKGVEPKGKDCQSFSEYRQRYSLYDAKKLIYRALAWRLFDDSHADYGHALTILGL
                     DEDESGVEQIGFAFSKFTLDID"
     gene            complement(7179..7808)
                     /locus_tag="U1404_001460"
     CDS             complement(7179..7808)
                     /locus_tag="U1404_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM5348406.1"
                     /translation="MIKEFCSENHVAVVKALSLGAQRVELCDNLAVGGTTPSYGVIKH
                     VCQLAHENEATVMTMIRPRGGDFCYDEAEVEMMVEDCKAAIELGADGLVYGLLTEENW
                     LDEPALERLFAVSQDCQIVFHMAFDQIPRERQFEALDWLVEHGVTRILTRGSLTGSAL
                     NNVEWLQEIVAYAQGKIEILIGGGLTVDNVPTLLEALPINQVHGTRLFW"
BASE COUNT         2223 a         1952 c         1425 g         2240 t
ORIGIN      
        1 tcattattgc tattttcgat ttgttctcta aaataaaatc catcctgggt taacaacaaa
       61 ccatattcca aaaactcctc gtcaattttg ctcctaatag gactatagcc aaaaatctcc
      121 aaattctcta cgtcattaac tgtacaaaca aaatctttgc tccccaatat aaaccatctg
      181 gcccgaccgt agggaatctg cgtactagaa tattcaaaag actcggctaa tttgcataaa
      241 taatcacgaa taatatcttc atcgtattca tgtatttgac gactcgattt taaccatatt
      301 tgaaacaaag ctacataaat taataataac aataaaagaa taacaaatat tgcaaccaag
      361 ataatgatag ctacattcat atccaatacc acctatttct tcttacacct gaaaaaccac
      421 cgctggcttg tttctgtcgg agcttgatct tcaaagtccg caaagacttc cactgacgca
      481 aaaccagctt ctttcaataa ttccacatag gtttcaatcg gatatgtccg ctcttcgtga
      541 acttcatccc gacggataaa ccgctcctct tgactgtcct catctttgac aaagaaggtc
      601 aattcatgca caatggaatg ctcatgctca ccttcgtagg tgtcccaaac aaaggcaaaa
      661 tcctcgtaat tttcatggta gctatagcct gcaaatactt tctccatttg atagatggag
      721 tgaacgtcaa aaaggaaagt gccaccttga ttgagaaccg agtgaacgcc ttcaaagacc
      781 cgcaaaacgg cttctcggtc cgacatatag cacagactgt ccgagtaaca ggtcaccgca
      841 tcgaaatctc ccacaccttc cagagccatc atatctgctt gggccaactc catcatgaca
      901 ccagcagctt ctgctttttt ctgggccaat tccaacattt cataagacag gtcaagacct
      961 gtcacttcaa agcccttttg agcaaaacgt acagcctgaa tccctgtccc acaggccaat
     1021 tctaaaattg tcttggtgtc ttgtggcaag ttccgtaagc taaaatctgt ccatttatca
     1081 tacaagctgt catccatgat ttcatcatag accgccgcaa aggtttcgta agttgccata
     1141 tttcccattt tccctttcat aaaaagcagc caatcgactg cttcattaac tcacactgtg
     1201 ttcaagaagt tcatcacttc taattacata atagtgaact ctctttggtc actttcgaat
     1261 tttatggtga ccagctgaaa cagttcccca aactgtttca ctcccacccc cgcacagctc
     1321 caacagtcag agtagtgact gttggaggtt ggaaatgaag cgaactcgtt cgcatcagcc
     1381 gtataggtca gatttggagt gggaagcacg aacaaagctg ccaatcaacc actgcgctga
     1441 gatgttgact caagtttcga atagtgcacc caaatcaaaa tctatcttca tatttttcaa
     1501 gaagttcatc acttctaatc acataatagt gaactctctt tggtcacttt cgagttttat
     1561 ggtgaccagc tgaaacaatt ccccaaactg tttcactatt cctcttctaa aaagtctgcg
     1621 acttccagga agctgccttc atgccataat ttttcaaggt tgtagaggtc acgcatttct
     1681 tctgagaaga tatgaacgac taggcctcca aggtccaaaa ggacccaacc accgttacta
     1741 tcgccttcta cacggctact cttgattcca acttccgcta ccttttcacg gatgttttcc
     1801 gcaatagcct ccaactggcg actgttcatg gaactggcaa tcacaaagta gtctgtcagg
     1861 ctggtcacgc cttgaacatc aattacaaca aggtcctcag ctcgcttgtc atcagcagcc
     1921 tgaaccacaa cttttactaa atctagttct ttcatcttat cctctaatta tattttctaa
     1981 tttatccacc tgggcaaaat tccatgacca gatgttttgg tagtggtcaa tcaagtcttc
     2041 ggcatccaat ttgcctgaat aacctgtcgt cgttccgtcc tggatcacag ctaccttgta
     2101 gcctagttca aaggctactt taatcgtcgt atcaatgcaa aaattggtcg ccatgcccat
     2161 gatgatgagt cgctcaattt ccttttcctg caaataagca tgaagcctcg tttccttgaa
     2221 ggcactgtta aaggtcttat cgaaaatctt ctcactagct aagggtgcaa caattgagtg
     2281 aatctcccag tcagcagtcc ccttgaccaa ttcctgatca tgatgtcgga catggatgac
     2341 ttctagcccc gcttgacggg cttgagcaag actatcttgc caaagagcca gtcgttcttc
     2401 aattgcatag ggttgctcct ccacaggcat actctgaatg tcaatgacta tcaaggctgt
     2461 tttcatatcc actccctaag gcgtttccaa acggaagacc aattcccttt cttcttcact
     2521 atccaagaca aaatcatttt tctccaagag atgagccatc ttctgattgc ccttaacata
     2581 agctgcaatc aaatggtcgc agacaggatg tgattgagcc attgctatta caacctccaa
     2641 agcagcttga ccatagcccc ttccttgaaa ctcttggcaa tcataaaccg ccagagcata
     2701 tactgctgga tgtcctcatc aatgtcaatc aaggcaaaac cgaccacctg ttgacccgcc
     2761 caaacagcgt aagggaagac atccccgttt tctctgtaaa gccaagcgtc agcgagtgaa
     2821 cgcacatttg gagccacgaa gcccttgtcc tcctcggcta ctgtcaagtc caagactgct
     2881 tgataggagc tttcatccac aggttttaat gcaatcatcc ctactccttc aaccaaacaa
     2941 catagccatt ataggtttcc aaggtttgtg gataaatggg aattcccttc ttggctaagt
     3001 aagaaatggt ttgggcagtt tcataggcta ctgccttgtc caaggactct tttgcgatac
     3061 gacgcgcctc gtccacccca ggaaaatccc gattgggttc gatatagtcc gccacataga
     3121 gaaccttgtc cagcaaggtc atctgcccag caccaatggt gtgtcgttga atggcttgga
     3181 agatttcttg gtcttccaaa ccaaaatctt ctgcgatttt ataggcccca accacaccgt
     3241 gccagatgtt attatcccag ttgagcaggg ccttgtccaa atcatacttg gcaatcaagt
     3301 ccaaaaaaac ttggtcttcc acttccttgg catagtcatg caagagtgct gccagactgg
     3361 cttttttcgg atcacagccg tatcgatctg ccaaggcaag cgccgcctct tccacaccca
     3421 agacatgttg gaagcgcgct ggcttcatgg ctacacggat tttttccaaa agagcttgac
     3481 ggtcaaaggt caaatctgct gcaatcattg gtaaagtcct ttttcttcga tatagtccag
     3541 aacttcatga ggcaccataa aattcggcac ccgtccttgc ttgataaagc tccgtaccat
     3601 gctggaggaa atgtccatca agggcacatc tacccagata accggatagg acgtccctgc
     3661 cttgtaacga ggacgctgga caccaacaaa ctgcaccaac tggaccaatt catcaatcct
     3721 gtgccatttt ggaaggtagt ctaccatatc tgcaccgatg atgaaataat aatccgtatt
     3781 aggatttttt tccttcagca atttcattgt gtcgtaggta tagctgacac cacggcgttc
     3841 tagttcaatg gtttcaatcc ccaagccctc aatacctgca atagccatct tgagcatgga
     3901 atagcgatgg tattcgtcaa tggtttcttt tttatccaca tgaggcggaa tgaattctgg
     3961 catgagcaag acttcatcca gcttcaactg ttgacggacc tggtctgcca caatcaaatg
     4021 agcattatgg acagggttga aattccctcc cagaatcccc acttgtttgc gattggtttc
     4081 tttcttttca acctctaatt caaccttggt aaagggtgtt aagagttcaa tagccatagg
     4141 ctctccttct tagatttctt tgacctgttt agaaatttta cggttctctt tcttgctaga
     4201 ttgtttgaat aaaatcaaga tgcgaccgat tttttggacc gtatccacac cgatttcttc
     4261 ttccaagatt tctgctactt cgtgaatgtt ttcatccgta ttttgtagca aggtcacctt
     4321 aatcaattca cgcgcatcca acgcctgacg aacactggtt ttaatctggt catttagacc
     4381 atttttccca atctgaataa tgggtttgag actatgtgcc tgactgttca aaaaggcacg
     4441 ttgttttgaa gttagcataa tttattatac aaagggcgtt gtaacagact gggagactgt
     4501 tacaatcggg aaataaagaa aacaaagttt ttccttattg cgccgatata cttagcccgt
     4561 gttcaaatca gaagacttga acttcctttc tctttaattg taaaaactga aatcaaatac
     4621 ctcttatact caatgaaaat taaaatcaga ctaggcgacg cagatgcaga tagaacccta
     4681 ctactttcac gctttcaggt agcaggctgt aaagctccac tggagcttta cactcatcaa
     4741 atcaagtcaa caacgtctgc ttttaatttt cgaagagtat tagataatcg ccttgcgaat
     4801 gaccacatcc acacccttag gagcccaggc agcaatcttg gctttttcat tgacacgaat
     4861 ccaaccaagt cctgagaaga ccacatccgt cttctcgttg atggtaaatt catgacggac
     4921 cagttcagga aattctttca attccttgct ggttggtggc actaaaagtg agcccgcatg
     4981 tttctgataa aactcgctag ctccctgcaa cttggtgcgg tggagttgga gctcattatc
     5041 aaagaaggcc gtaaagcctt ggcgttcacc agccacaaag tcaaatcgtc ccagaccagc
     5101 caagaacaag gtttgttctg gattgagctg gtaggtcttt ggcttgattt ccttgcgagg
     5161 gctgatgtac ttgaggtttt tagccgtcaa ataatgggcc atctggtgac ggtggataat
     5221 tcctggcgtg tcatagatgt atgaaccatc atccagaggg atttcaatct tatccagcgt
     5281 cgttccaggg aaacgtgaag tcgtaatgac atccttgtcc cctgtgattt cttgaataat
     5341 agcgttaatc aaggttgact tgccgacatt ggtcacgccg accacataga catcccgtcc
     5401 cttgcggtgt tgttcaatct tttcaatcaa atccttgata gcctgcttat tttgggctga
     5461 agtcaagacc acatcaaccg gtcgcatgcc gatttcatgt gcccgctcgg tcaaccactg
     5521 agtaaccttg cctgtcttga cagacttggg taaaatgtcc tgcttgttgc cgaccaaaag
     5581 cacgtcattt ccagaaataa agcgaggtaa acctggaatg actgacccat tgaaatcaaa
     5641 aatatcaatg acattaacca ccaaggcatc gctttctcct acgctatgga ggagtttcaa
     5701 gaaatcatcg tctgagatat tgacatctga aatctcattg taatggcgca aacggaaaca
     5761 acgttggcag tagagttgcc ctgtttccag gcctttttct agggctgatt gaggtgtaaa
     5821 accagcgaca gccttgtcta gcgtctgaat ctgggcacca cagccgatac aaaataattc
     5881 ttccacttac atctccctct tgtagtctat cgctccatat ttagcgatga tttttttcat
     5941 agtccgtcgc tcacgccaac ggttaatctg cgtattgata gagtccgtct ttatcaaggg
     6001 tttgaccaag acagacttga gaccagctcg cttagcagcc cgaatatccg tcatcagctg
     6061 atcgccaatc ataattacct catacggctg gacatcaaag cgtttcaaag cacggttaat
     6121 cccaaaggtg aaaggcttga gagcgaaggc ttcaaattca atcccaaatt tttcaaccgc
     6181 ccgtttgaca cgttcgtatt tattgttaga caccaccaca acaggaatac ctgcgtcctg
     6241 caaatcatgt aaccactggc gcatctctgg cgtaccatcg ggattattcc aagcaatcaa
     6301 ggtattatcc aagtcaacaa acactacttt tatgccatgt tttttcaagc tttcgacggt
     6361 cacatcataa gccttttcca aggcaaaatc cggcatgtaa ttttctaaac tcactgtcgt
     6421 ctccaaagtt ttttatcaga taattatacc atttttctaa gaaaaatgcg aatcgatagc
     6481 agaaaacact cggatcaacc gagtgttttc tagaggtaat gtaatggtag ttgtgaatta
     6541 aatctgacct tcttccaaaa tccaatcttt cggaatgaaa atcatatggg ttagcaatca
     6601 atcaatatca agagtaaatt ttgaaaaagc aaaaccgatt tgctctactc ctgactcatc
     6661 ctcatccaac cccaaaatgg taagagcatg tccataatct gcatgactat catcgaatag
     6721 acgccacgcg agagcgcgat aaattaactt cttagcatca tagagactgt aacgctgtct
     6781 gtactctgaa aatgattgac aatccttacc tttcggttct actcctttgg ttttagcaat
     6841 ggcaatcaag ctatcataat tatgataacg caaagtacta ttcaaggatt gggctaaacg
     6901 aacagcatag tccaaagcta aatcactcac ctcaacagcc acagttctca attctttacg
     6961 taggggattc aatagagacg cagcagtttc tagtctgtat accggacttt aacaaacaaa
     7021 aatgaaaaca gccgaacatg tcgactgctt ccgtggagat tatatgaaaa agaataaata
     7081 tattgtatct tccaatgctt aaacaaacct taacttctaa acatttctga ataaacttcg
     7141 attattactc tgtaatttat ttcactttca aagctacctt accaaaataa tctcgttcca
     7201 tgtacttgat tgattggtaa tgcttctaat aacgttggca cattgtccac agtcaatcct
     7261 ccaccaatca aaatctcaat tttaccttgt gcataggcga caatttcctg taaccattcc
     7321 acattgttca aggcagaccc tgtcagactc ccacgcgtca aaatccgtgt cactccatgt
     7381 tctaccagcc aatcaagagc ctcgaattgg cgttcgcgag gaatttggtc aaaagccatg
     7441 tgaaagacaa tctgacagtc ctgcgaaaca gcaaacagtc tttccaaggc tggttcgtcc
     7501 aaccaatttt cctcggttaa caaaccataa accagaccat ctgcccccag ttcaatcgct
     7561 gctttacaat cttcaaccat catttccacc tctgcttcat cgtagcaaaa atctccaccg
     7621 cgagggcgaa tcatggtcat gactgtggct tcattctcat gagccagttg acaaacatgt
     7681 ttgatcactc cataactcgg cgtcgttccg ccaaccgcta aattatcaca cagttcaact
     7741 ctttgagcac ccagagaaag agctttcacc acagctacat gattttcgga acaaaattct
     7801 ttaatcatct ttattccttt caagtctttt ttctttagta
//
LOCUS       DASGCC010000092         7788 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.092, whole genome shotgun sequence.
ACCESSION   DASGCC010000092 DASGCC010000000
VERSION     DASGCC010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7788
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.092"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(1271..1909)
                     /locus_tag="U1404_001461"
     CDS             complement(1271..1909)
                     /locus_tag="U1404_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM5348407.1"
                     /translation="MIIHKSVNPVAFQNTYYLENDTHLIIIDPGSDWTKIQVTIEKIG
                     KPISAILLTHTHYDHIMSLDILRETYNFPPVYVAESEASWLYTPEMNLSGLPRHDDME
                     NVVCRPAEKIFQYQEEYQFDGFHFKVVPTPGHSIGGVSFIFPEDECVITGDALFRETV
                     GRTDLPTSNFDDLITGIREHIFPLPNHYTVHPGHGQNTSVGHEKNFNPFFRM"
     gene            1972..4485
                     /locus_tag="U1404_001462"
     CDS             1972..4485
                     /locus_tag="U1404_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DnaQ family
                     exonuclease/ATP-dependent helicase"
                     /protein_id="HEM5348408.1"
                     /translation="MEFVWSFFHEREYAIMNSMKDTRTSNRYAVVDLEATGTGTDAKI
                     IQIGIVLVENGEIIDSYATDINPYELLDDHIKNLTGITDQQLSQAPDFGQVASTIYDM
                     IGDAIFVAHNVKFDANLLAEALFFEGYELLTPRVDTVELSQLFFPTFEKYSLGNLAEH
                     LELGLDQAHTAISDALATARLLIKIQEKIKSLPRSIVEKILDLADNLLLESRLVIDEM
                     VPVLSENLSYDLESIHDLVLKKPEEIKSAYRLSEDFSTNIALLGLHERKKQTAFAQVV
                     EKRLVDEEKVHFIQAQAGLGKTYGYLLPILAKSEQLLVVTVPTKLLQEQIMEKEGSKL
                     KEIFRIPVVSLKSPKHFIKLDNYWKTLQRQDDNRLVNQFKMQVLVWLCETTTGDLDEL
                     KQKQRYQAYFDEIAHDGKLEPESLFWGWDFWQRLNQQALSSRLLITNHAYFLNHLKDQ
                     DLLMDKRLVVIDEAQKFLLAAENLATASQDLTSMLQVLQSKKDRATTILDQRLYESCQ
                     FELNHFLSRFRQHGQREVQKAELHQLGQNLEELGDIDLNDLHQLIDYYDTFWLEEKNL
                     EEKRLAYLRGSKDSLLNATNYLPDTKIFCISATLTISKKVSLADLLGFEQVTLDLIPT
                     QTVTNQQLLFPTHLPDILAWTKEEHAAYLATTLGEIAELGRPILVLFTSISLLLQVSD
                     LLEGNNIPHLAQHKHGQEMTLKRKFERGECQILLGTGVFWEGVDFASQNQLIQVITRL
                     PFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMIKLKQAIGRTNRHDKQDSLVLVLD
                     PRVHTKRYGQQILSFFEKDYSMLSVDAKEIEGAIQDFFE"
     gene            4646..5722
                     /locus_tag="U1404_001463"
     CDS             4646..5722
                     /locus_tag="U1404_001463"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEM5348409.1"
                     /translation="MTEKTIVFKVGTSSLTQENGSLDRIKIARITNQLAQLHQKGYQI
                     VLVTSGSIAAGFRRLGFEKRPTKIAEKQASAAVGQGLLIEEYTQNLMKDGIVSAQILL
                     TQDDFADARRYQNASQALQVLLKQRVIPIINENDTIAIEEIKVGDNDTLSAQVASLLK
                     ADLLVLLTDVDGLYTANPNSDPNAKHLPVITEITEDLFAMAAGAGSSNGTGGMTTKLQ
                     AAQIATKSGVPVFICSSKEDTALLQAVTQANRGTLFLADDHAMNQRKQWMAFYARTDA
                     AVEVDAGAVDAMLHQGRSLLATGVKALEGDFEVGQVVEVYSQADHRLIGKGRVKLSSK
                     DLQDQLANGRAEGVFIHRNDWVSL"
     gene            5732..6970
                     /locus_tag="U1404_001464"
     CDS             5732..6970
                     /locus_tag="U1404_001464"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEM5348410.1"
                     /translation="MTTTQALLDSLLAHKASINLATTEQKNQALSAMADQLVAQTEAI
                     LAGNAIDMEHAQGKISQVMQDRLLLTAERIEAMADGIRALIGLPDPVGLILEESARTD
                     GLNICKKSIPFGLVGMIYESRPNVTSDAAALAIKSGNAVILRGGKEAFHSAQAIVTAL
                     KAGLEQVGLSPKVIELVQDTSRASATELMTAKGKIDLLVPRGGAGLIQAVVENATVPV
                     IETGTGICHVYVDKDADLNKALRIVVNAKTSRPSVCNAAEVLLVHEEIASQFLPRLEE
                     ALSGQVELRADSQAQTLLNQSTPAGEQDFDTEFLDYVLAVKVVSNVEEAISHIAQHST
                     GHSEAIVTENSQTAELFTLHVDSAAVYVNASTRFTDGGEFGLGCELGISTQKMHARGP
                     MGLREMTTYKYIITGDGHIR"
     gene            6980..7765
                     /gene="proC"
                     /locus_tag="U1404_001465"
     CDS             6980..7765
                     /gene="proC"
                     /locus_tag="U1404_001465"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM5348411.1"
                     /translation="MKIGFIGLGNMGAALAHAVSQLPETQLLLSNHNPAKAQALQEKV
                     GGQLFSNGQIAEQAEIIFLGVKPHLIQTVLSGLQDQISQNPSAIWISMAAGVTLDSLA
                     AFVSADKLIRIMPNTPVAIGQGMTTYSLVNQELAPLLEQILEKSGKVQQMPESLIDAA
                     TAIAGCGPAFVYQMIEALTDAGVENGLTAQDAKVLAAQTLAGTAQMVLTSDKHPAQLR
                     QEVTSPGGSTIAGVVALEKEGFRYAIIKAVAAALKKTRKLGKK"
BASE COUNT         2238 a         1645 c         1834 g         2071 t
ORIGIN      
        1 attgttgctt tttgtgaacc acgccgactt tgaatctgat aatatcgttc tgctaatggg
       61 ctgccttttt gtcttttgac agcgaaggcc gcttgacata agcatttctt ccaataggaa
      121 ttcccgtgtc gaatcttggt acttcgtttt tcccactctc taggattttt tattatatga
      181 cttttagtcc atcacaatcc gtaaagtatg tgacaaatga accgaggatg ggcaaaaaat
      241 ggtcctataa tttctgtagc gggtaaaacc actatggagc cttttaaatg taaaagccat
      301 atgacctata atgaaaagcg acaaaactta cattagaaag aggtcatatg gaataaatca
      361 agagttaggg gagtgactct tgattcctga gcctagaaat agaaaagcga agatcttatc
      421 acaaattttc ttggaataga agacaaaaat atcgctatca tgactgaata tgatgtggaa
      481 actcacttag attgtgtgtc tccaaaatgt cttgcctgaa agggacaaat agtgaaatac
      541 aacttccaaa gagcatctaa aatcctttgc ttagaagcag ctgataatcc tttctcctta
      601 tccatcttag aaagcgtcgg ttcaagtgta aaggatgcgg gaaaatggtt gtcgctgaaa
      661 ttcacttatt aaaaaaacga ccaaatctct gttgctatta accagaaaaa aaccaaatta
      721 ctactcgttg agaatcaagc aaagagtaag caatgttcac ctgatactat tgtcatcaag
      781 gatagctttt ccatcctatt cggaactata aagtaagagt ttttgaaggg ggtagatatt
      841 ggttgcatgt attgaaaaac ttgtggttcc atggttttta aggttactct atctggctat
      901 attttgaact atgttattac accaatttct gattatgtag tgaattgctt gttggaaggc
      961 tatcagtaat ctgtgatttt agcagattta gtcaggagtt taaagacaac ttggaacaga
     1021 aggatagaac atggaaggag ttaattagta taacaaatgg agattattag ccatgaggcg
     1081 aaccattgaa actcgttttc tgaatcatac gctttgtttg atatagaaca aacctttgcc
     1141 agaggactgc tcggattaca gctacggatt gaacaaatcc tacttatcta caatctaagc
     1201 tattttgact ttaactagta gcacgggtaa aaaaactgcc tagttcaatc agaactgggc
     1261 agtacttatt ttacattcta aaaaatggat tgaagttttt ttcgtgtcca acgctggtat
     1321 tttgaccatg acctggatgg acagtatagt ggtttggcag gggaaagata tgttctctga
     1381 tgccagtaat caggtcatca aagttgctgg ttggcaggtc tgtgcgtccc acagtttcac
     1441 ggaaaagtgc gtctccagtg atgacacatt catcctctgg gaagataaag gaaacaccac
     1501 caatagagtg cccaggtgtt ggaactacct tgaaatgaaa accgtcaaac tggtattctt
     1561 cttggtattg gaagattttt tcagcaggtc ggcagactac attttccata tcatcatgac
     1621 gaggtaggcc tgatagattc atctctggtg tgtagagcca gctggcttca ctttcagcca
     1681 catagacagg cgggaaattg taggtctcac gcagaatgtc caaactcata atatggtcat
     1741 agtgagtgtg agtcaggaga atagccgaaa ttggttttcc gattttttcg atagttactt
     1801 gaatttttgt ccagtcactc ccagggtcaa tgataatcag atgggtatca ttttcaaggt
     1861 agtaggtatt ttgaaaagcg acaggattga cagatttgtg aataatcatt ctttttcctt
     1921 cttctaacag ttactgatgt tactagtcta acaaaaaaac acgccttctt catggaattt
     1981 gtttggagct ttttccatga gagggaatat gctataatga acagtatgaa agacacaaga
     2041 acaagcaatc ggtatgccgt tgtagatttg gaagcaactg gtacaggtac cgatgcaaaa
     2101 atcattcaaa tcgggattgt tctcgttgaa aatggagaaa tcattgacag ttatgcaacg
     2161 gacatcaatc cctatgagct actggatgac catatcaaga atctgacagg tatcacagac
     2221 caacagctaa gtcaggctcc agattttggt caggtagcaa gtaccattta tgacatgatt
     2281 ggagatgcta tttttgtagc ccataatgtc aaatttgatg ccaatctctt ggcagaagca
     2341 ctcttttttg aaggctatga actgttgaca ccgcgtgtag atacggtaga attatcacag
     2401 ctatttttcc cgacttttga aaaatatagc ttgggaaatc ttgcagagca tttggaactt
     2461 ggtttggacc aggcacacac ggccatatca gatgctctgg caacggctcg cttgctcatc
     2521 aaaattcaag agaaaataaa gagcctaccc aggtctattg ttgaaaagat tcttgatttg
     2581 gcggacaatc tgctcttgga atcccgtctg gtcattgatg agatggtgcc tgttctgtca
     2641 gaaaatctat catacgattt agaatctatt catgacttgg tcttgaaaaa gccagaagaa
     2701 atcaagtcag cctaccgatt atctgaagat ttttcgacca atattgccct tctcggcttg
     2761 catgaacgaa aaaaacaaac tgcttttgct caagtagtag aaaaacgctt ggttgacgaa
     2821 gaaaaagtgc attttattca agcgcaggca ggtttgggga agacttacgg ttatctcttg
     2881 cctatacttg ctaagtcaga acagctttta gtggtcaccg taccgaccaa gctccttcaa
     2941 gagcagatta tggaaaagga agggagcaag cttaaagaga tatttcgtat tcccgtagtc
     3001 tctctaaaat cgcccaagca ttttatcaag ttagacaact actggaaaac cctgcagagg
     3061 caggatgata atcgcctggt caatcaattc aaaatgcagg tgcttgtctg gttatgcgaa
     3121 accacgacag gtgatttgga tgagcttaag caaaaacaac gctatcaagc ttactttgat
     3181 gagattgccc acgatgggaa attggagcct gaaagtcttt tttggggctg ggatttttgg
     3241 caacgattga accaacaagc tctctctagt agactgctca ttaccaacca cgcttatttt
     3301 ctcaaccatc ttaaggatca agacctactc atggataagc gtctggtggt gattgatgaa
     3361 gcacaaaagt ttctcttggc tgctgaaaat ctagcgacgg cttcgcaaga tttgacaagt
     3421 atgttacaag tattgcaaag taaaaaggac agagcgacga ctattttgga ccaacgtttg
     3481 tatgagtctt gccagtttga actcaaccac tttttgagtc gttttcgtca gcatggtcaa
     3541 cgagaggttc aaaaggctga acttcatcaa cttggtcaga acctggagga gcttggagat
     3601 attgatttga atgacttgca tcagctcata gactattacg ataccttttg gttggaggag
     3661 aaaaatttag aagaaaagcg gcttgcctat ttgcggggtt ccaaggacag cctcttaaat
     3721 gcgaccaact acctgcctga taccaagatt ttctgcatca gtgccacctt gacaatcagc
     3781 aaaaaggtca gtctggcgga tctgttgggc tttgagcagg tcaccttgga tttgataccg
     3841 actcaaactg tgaccaacca gcagctgctt tttccgaccc atctccccga tatcctcgct
     3901 tggaccaagg aggagcatgc agcttatttg gctactactt taggagaaat agcagagctg
     3961 ggacgaccga ttttggtctt gttcacatcg atttctctgc tcttgcaggt gtcggatttg
     4021 ttagaaggca ataacattcc ccacctagcc cagcacaagc atggacagga aatgactctc
     4081 aaacgcaaat ttgaacgagg ggaatgccaa attttactcg gcacaggtgt attctgggag
     4141 ggcgttgact ttgccagtca gaatcaattg attcaggtta ttacaaggct cccatttgac
     4201 aatccaaagg accggtttgt acaaaaaatc aatcaccatc tgcgtgaaga agggaaaaat
     4261 ccattttatg attacagcct gcctatgatg atgattaagc tcaaacaagc catcggtcgt
     4321 accaatcgcc atgacaaaca agattcacta gtcttggttt tggacccgcg tgttcacacc
     4381 aaacgctatg gacagcaaat tctgtccttc tttgagaaag attattcaat gttaagtgtg
     4441 gatgcgaaag aaatagaagg agctattcaa gatttttttg aataagttga aagggagcca
     4501 caaggcttcc ttttgtttcc agcgtttttt aatgctactc ttgattagga atctattccc
     4561 tctctccttg ccgaataaca gtgattttct ttatgattaa aatatggtat aattttccaa
     4621 atattagttt ttgtgagaag agattatgac agaaaaaaca attgtattta aggtcgggac
     4681 aagttctctg acccaagaaa atggcagtct ggaccgtatc aagattgctc ggattaccaa
     4741 tcagctggct cagttgcatc agaagggcta ccagattgtg ctggtgacgt cgggctcgat
     4801 tgctgctggt tttcggagat tgggctttga gaaacgacca accaagattg cggagaagca
     4861 ggcttctgcg gccgttggac aaggtttgct gattgaggaa tatacgcaaa atctgatgaa
     4921 agatggcatt gtgtcggctc agattttgct gacccaggat gattttgcgg atgccagacg
     4981 ttatcagaat gcctctcaag ccttacaggt cttgctgaaa caacgtgtta ttcctattat
     5041 caacgaaaat gataccattg ccattgagga gattaaggta ggggacaatg atactttatc
     5101 tgcccaggtg gcttctctct tgaaagcaga cctcttggta ctcttgacgg atgtggatgg
     5161 gctttacacg gccaatccca acagcgatcc caatgccaaa catttgccag tgattacgga
     5221 aattacggaa gatttatttg ccatggcagc aggagctggc tcgtccaacg gaacaggtgg
     5281 catgaccacc aaattgcagg cggcccagat tgcgaccaag tcaggcgtgc ccgtctttat
     5341 ctgctcttca aaagaggata ccgccctctt acaggcggtc acccaagcca atcgtggaac
     5401 gctcttttta gctgacgacc acgccatgaa ccaacgcaag cagtggatgg ccttctatgc
     5461 tcggacagac gcagcagttg aagtggatgc aggagcggtt gatgccatgt tgcaccaggg
     5521 ccgcagtttg ttagctactg gtgtcaaagc cctggaaggc gactttgaag tgggccaggt
     5581 cgtagaggtt tatagccaag cagaccatcg tttgattggt aaaggacggg tcaaactgtc
     5641 ctccaaggac ttgcaggacc agttggcaaa tggcagagcg gaaggtgtgt ttattcaccg
     5701 caacgattgg gtgagcttat aggagaaaga tatgacaaca acacaagcat tattagatag
     5761 tttattggcc cacaaggctt ctatcaacct agcgacaaca gaacagaaaa accaggccct
     5821 atcagcaatg gcagaccagt tggttgctca gactgaggca atcctagcag gcaatgccat
     5881 cgatatggaa catgcccagg gaaaaatcag ccaagttatg caggatagat tgctcctgac
     5941 tgctgagcgg attgaagcta tggcagatgg cattcgtgcc ttgattggct tgccagatcc
     6001 agttggtttg atcttggaag aatccgctcg gacagatggc ttgaacatct gcaagaaatc
     6061 cattcccttt ggtttggtgg gaatgattta cgaaagccga ccaaacgtga cttcagatgc
     6121 cgcagccttg gccatcaaga gcggaaatgc agtcatcttg cgtggtggca aggaagcttt
     6181 tcattcggcc caggctattg tcacagccct caaagctggt ttggagcagg ttggcctttc
     6241 accaaaggtc atcgagttag tccaagatac cagccgtgcc tctgcgacag agttgatgac
     6301 cgcaaaaggc aagattgacc tcttggtgcc acgtggcggt gcaggactca ttcaagccgt
     6361 cgttgaaaat gcgactgtgc cagttataga aacaggcacg ggtatctgcc atgtctatgt
     6421 ggacaaggat gcggacttga acaaggcctt gcggattgtg gtcaatgcca aaaccagtcg
     6481 tccctcagtc tgcaatgcgg cggaagtctt gttggtccat gaagaaattg ccagccaatt
     6541 cctacctcgc ttggaagaag ctctatctgg tcaggtggaa ttgcgtgctg acagtcaggc
     6601 acagactctt ctcaaccaat ccacaccagc aggcgagcag gattttgata cagagtttct
     6661 ggattatgtt ttggcagtta aagtcgtttc aaacgtagaa gaggctatca gccacatcgc
     6721 tcaacactcg acagggcaca gcgaggccat cgtgacggaa aacagccaga cggctgaact
     6781 tttcacactc catgtggatt cggcggcagt ctatgtcaat gcctcgaccc gcttcacaga
     6841 cggtggcgag ttcggtctgg gctgtgagct aggtatttct acccagaaga tgcacgcccg
     6901 tggtccaatg ggactgcgtg agatgaccac ctacaagtac atcatcacag gcgacggcca
     6961 cattcgttag gaggacaaga tgaagattgg atttatcgga ctgggcaata tgggagcggc
     7021 attggctcat gcagtcagcc agttgccaga aacccagctc ctcctcagca accataaccc
     7081 agcaaaagcc caggctcttc aagagaaggt aggcggtcag cttttttcta atggacaaat
     7141 agcagagcag gccgagatta ttttccttgg ggtcaagcct cacctgattc agacagtctt
     7201 gtcaggcttg caggaccaga ttagccagaa tccatcagct atctggattt ccatggcagc
     7261 aggagtgacc ctcgacagcc tggcagcatt tgtatcggct gataaactca ttcgtatcat
     7321 gcccaacaca ccagtcgcta tcggccaagg catgacgacc tatagcttgg tcaatcaaga
     7381 gctcgctccg ctattggaac aaattctaga aaaatcaggc aaggtccaac agatgccaga
     7441 gagcctaatc gacgcagcaa cggctatcgc aggctgcgga ccagcctttg tctatcagat
     7501 gattgaggct ttgaccgatg caggagtgga aaacgggctc acggctcagg atgccaaggt
     7561 attggcggct cagaccctgg caggaactgc tcagatggtc ttaaccagcg acaagcaccc
     7621 agcccagctg agacaggaag tgacctcgcc aggcggctcg actatcgcag gtgtggtagc
     7681 tcttgaaaaa gaaggcttcc gttacgccat tatcaaggca gtcgccgccg ccctcaaaaa
     7741 gactagaaaa ttaggcaaaa aatagaagac agcaaaaaac gggacttt
//
LOCUS       DASGCC010000093         7619 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.093, whole genome shotgun sequence.
ACCESSION   DASGCC010000093 DASGCC010000000
VERSION     DASGCC010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7619
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.093"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(29..99)
                     /locus_tag="U1404_001466"
     tRNA            complement(29..99)
                     /locus_tag="U1404_001466"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(65..67),aa:Cys,seq:gca)
     gene            358..1134
                     /gene="rpsB"
                     /locus_tag="U1404_001467"
     CDS             358..1134
                     /gene="rpsB"
                     /locus_tag="U1404_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEM5348412.1"
                     /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQ
                     QTVKLADQAYEFIRDAAANDAVILFVGTKKQAAEAVKDEAIRAGQYFINHRWLGGTLT
                     NWGTIQKRIARLKEINRMEEDGTFDVLPKKEVALLNKQRARLEKFLGGIADMPRIPDV
                     MFVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMA
                     DAIIEGNQGEDSVAAVEAELAAEPASTESIEELVEVVEGK"
     gene            1444..2484
                     /locus_tag="U1404_001468"
     CDS             1444..2484
                     /locus_tag="U1404_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEM5348413.1"
                     /translation="MAEITAALVKELREKSGAGVMDAKKALVETEGDIEKAIELLREK
                     GMAKAAKKADRVAAEGLTGVYVDGNVAAVVEVNAETDFVAKNAQFVELVNTTAKVIAE
                     GKPADNEAALKLAMPSGETLEEAYVNATATIGEKISFRRFALVEKTDAQAFGAYQHNG
                     GRIGVISVVEGGDETLAKQISMHIAAMKPTVLSYTELDEQFVKDELAQINHKIEQDNE
                     SRAMVDKPALPLLKYGSKAQLTDEVIAAAEEAIKAELAAEGKPEKIWDKIIPGKMDRF
                     LLDNTQVDQAYTLLAQVYIMDDSKTVEAYLNSVNASVVEFARFEVGEGIEKASNDFEA
                     EVAATMAAALGK"
     gene            complement(2641..3342)
                     /locus_tag="U1404_001469"
     CDS             complement(2641..3342)
                     /locus_tag="U1404_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HEM5348414.1"
                     /translation="MLDISYQANTFHISHHGRPIGSIHTYSNPYHQTNIYLRLDLADY
                     DCTIAEQLFQSLQTSLGGKPLQVMLSSAEQERIHFLTAAGFVCKRKCYEFEVTKQDYL
                     SQTGTSNLGIVRKGTAPYQIACQQIFDHYQTVHQDINPWTASQEEFEKDLPDLVYTDS
                     ENCAFVDTDEIAYVCGKDEQSFGSFIQAVICQLFEQYEQISFEADDCDPIAMHLADQF
                     RQPNKPSWDAYILEI"
     gene            complement(3342..3680)
                     /locus_tag="U1404_001470"
     CDS             complement(3342..3680)
                     /locus_tag="U1404_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM5348415.1"
                     /translation="MNFQDYIQDFTSVTVEQAQNLLATKEGAVLFIGRATCPYCNRFA
                     PKLHKVAQDKQVTVHFLDSSQISPELQALRDHYQVPTVPGLLVAKSTGVQVRCDSSMT
                     EEEIAAFIQD"
     gene            3950..4408
                     /locus_tag="U1404_001471"
     CDS             3950..4408
                     /locus_tag="U1404_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HEM5348416.1"
                     /translation="MAMKNTSDYIEEHIKAILDQVSVAELRRSELASRFEVVPSQINY
                     VIKTRFTASRGYIVESKRGGGGYIRIGRITFSDKHELVHDLLNNMGEQLSATVYADIL
                     QLLFDEGLMTEREGNLFLSTGSDEILGKDASTIRARMMRQILRRLDRKEE"
     gene            4412..6865
                     /locus_tag="U1404_001472"
     CDS             4412..6865
                     /locus_tag="U1404_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5348417.1"
                     /translation="MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAG
                     AVLAEYPISISDYEHATFIVTDKVYREELDSFRILPSSKRLDETASFAKKIAEVVKAK
                     ELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNVEARAGFTKEDLK
                     AIRSVMKGGKAKPANMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIA
                     RMIQILSRKTKNNPVLVGDAGVGKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVI
                     AGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGIDSTLDAANILKPALA
                     RGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHR
                     VRIGQAAVETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKA
                     LMDKKYKTVSKLLIKTKEDAEASQNYDLEVTEEDVLETLSRLSGIPVAKLSQSDTKKY
                     LNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTELAKA
                     LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLL
                     FDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGF
                     GALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVFHSLTESDMQDVVKVMVKPLF
                     AVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLATG
                     STLKVGVKGEELKFDVVKG"
     gene            6984..7475
                     /locus_tag="U1404_001473"
     CDS             6984..7475
                     /locus_tag="U1404_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEM5348418.1"
                     /translation="MNQTIAVVFGTFAPMHKGHLDLIERAKLACGQVCVVVSGYDRDR
                     GDRIGLDLTKRFQFAQEQFKEDDFVEVRALDETDLPPYPDGWDLWLERLLGLLDLSEH
                     QVPVFYVSEEEYAQELHRRGYQAHYSPRKFGISATLIREHPQQYQDYIAPAFLAFFGK
                     ERL"
BASE COUNT         2211 a         1428 c         1869 g         2111 t
ORIGIN      
        1 agattcctag gttttttaga atattaaaag gcggtagacg gatttgaacc gacgatcaag
       61 cttttgcaga gccgtgcctt accacttggc tataccgcca taacaaataa tattgtacct
      121 taaatagtga aattggtcaa gtggaaattt tcgtatcagc cccatttcta atttaccgtg
      181 ctgaattttg acgaatttct ctgctatttt acttgaaaat agggaggtat tctgatatac
      241 taatagagtt gctgtgcaac aaatactcat ctcggaccaa ttgtggtctt gttgccgaaa
      301 ggttaggctg caagtcgaag ttcgggagag gagaaaaaac aaaaaggaga aatactcatg
      361 gcagtaattt caatgaaaca acttcttgag gctggtgtac acttcggtca ccaaactcgt
      421 cgctggaatc ctaagatggc taagtacatc ttcacagagc gtaacggtat ccacgttatc
      481 gacttgcaac aaactgtaaa attggctgac caagcttacg aattcatccg tgacgctgca
      541 gcaaacgacg cagttatctt gttcgtaggt acaaaaaaac aagctgctga agctgttaaa
      601 gacgaagcta tccgcgctgg tcaatacttc atcaaccacc gttggttggg tggaactctt
      661 acaaactggg gtacaatcca aaaacgtatt gctcgtttga aagaaatcaa ccgtatggaa
      721 gaagatggaa ctttcgacgt gcttcctaag aaagaagtag cattgttgaa caaacaacgt
      781 gctcgtcttg aaaaattctt gggcggtatc gctgacatgc cacgcattcc agatgtaatg
      841 ttcgttgttg acccacacaa agagcaaatc gctgttaaag aagctaaaaa attgggtatc
      901 ccagttgtag cgatggttga cacaaacaca gatccagatg atattgatgt tatcatccca
      961 gctaatgacg acgctatccg cgctgttaaa ttgatcacag ctaaaatggc tgacgctatc
     1021 atcgaaggca accaaggtga agacagcgta gcagcagttg aagctgaatt ggcagctgag
     1081 ccagcatcta cagaatcaat cgaagaattg gttgaagttg tagaaggaaa ataagtaacg
     1141 aaggcgttta gaaatctgta tgaaaatagg aaactgacgc agtatgcttg catacaagga
     1201 agtttatctt tttcactaag attttagcct gagtacaata aaataagtaa cgaggacgtt
     1261 aaaaaaaagc gttagatttt agaaaatgga cgtagcagtc tggggactgc aaggagattt
     1321 gtctaaatcc tagcttttta gtccgagtac attctacatc atttatcaga cacaaaaaca
     1381 atcctagagg ggcagggctg agcccgctcc tctattttac aaatacaaac aaggagaata
     1441 gacatggcag aaattacagc agctctcgtt aaagaattgc gtgaaaaatc aggtgctggc
     1501 gttatggacg cgaagaaagc attggttgaa actgaaggtg atatcgaaaa agcgattgaa
     1561 ttgcttcgcg aaaaaggtat ggctaaggca gctaagaaag ctgaccgtgt agcagctgaa
     1621 ggtttgactg gtgtttacgt tgatggtaac gtagcagcag ttgttgaagt taacgctgaa
     1681 acagacttcg ttgcaaaaaa cgctcaattc gttgaattgg taaacactac tgctaaagta
     1741 attgcagaag gtaaaccagc tgacaacgaa gcagctctta aattggctat gccttcaggt
     1801 gaaactcttg aagaagcata cgtaaacgca actgcaacta ttggtgagaa aatctcattc
     1861 cgtcgctttg ctttggttga aaaaacagat gctcaagcat ttggtgcata ccaacacaat
     1921 ggcggccgta tcggtgttat ctcagttgtt gaaggtggcg acgaaactct tgcaaaacaa
     1981 atctcaatgc acatcgctgc gatgaaacca actgttcttt cttacactga attggatgag
     2041 caattcgtta aagatgagtt ggcacaaatc aaccacaaaa ttgaacaaga caacgaaagc
     2101 cgtgcaatgg ttgacaaacc agcattgcca ttgttgaaat acggttcaaa agctcaattg
     2161 actgacgaag tgattgcagc agctgaagaa gctatcaaag cagaattggc agcagaaggc
     2221 aaaccagaaa aaatctggga caaaatcatc ccaggtaaaa tggatcgctt cttgcttgac
     2281 aacactcaag ttgaccaagc ttacacactt cttgcacaag tttacatcat ggacgacagc
     2341 aaaacagttg aagcttactt gaactcagtg aacgcttcag ttgtagaatt tgctcgtttc
     2401 gaagtaggtg aaggtatcga gaaagcttca aacgactttg aagcagaagt tgcagctaca
     2461 atggcagcgg ctcttggtaa ataatgaata gtcaagaact tccgaaaggg gggttctttt
     2521 ttggcaaaat cggtcttagg gcggatgtcg gatatgcttg attcggttat actagtatca
     2581 atcctaaata tttttcataa tctccttaaa aagcaccggc catatggtcg gtgctttttg
     2641 ttagatttct aaaatgtaag catcccagct aggcttgttt ggttgtcgga attggtcagc
     2701 taaatgcatg gcgataggat cgcagtcatc agcctcaaag ctaatttgct catactgttc
     2761 aaatagttgg caaataactg cttggatgaa ggaaccaaag ctttgttcat cttttccaca
     2821 aacgtaggca atttcatcgg tatctacgaa ggcgcaattt tctgagtctg tataaactag
     2881 gtcaggtaag tccttctcga attcttcttg actggcagtc catggattga tgtcttggtg
     2941 gactgtttga tagtggtcaa aaatttgctg acaggctatt tgataaggtg cggtgccttt
     3001 gcggactatg cctaagttgg aagtgcctgt ttgactgaga tagtcttgct tggtcacttc
     3061 gaactcataa catttccgct tgcagacaaa gccagctgcg gtaaggaaat ggattctttc
     3121 ctgctctgca gaggagagca taacttgaag aggctttccg cctaaggaag tctgtaggga
     3181 ctggaagagc tgctctgcta tggtgcaatc gtaatcggcc aaatccagtc gcagatagat
     3241 attggtctgg tggtaggggt tgctgtaggt atggatgctg ccgattggtc ttccgtgatg
     3301 agagatgtgg aaggtgttgg cttggtagga aatgtctagc attagtcttg aataaaagcc
     3361 gcaatttctt cttcggtcat gctggaatcg cagcggactt ggacaccagt agatttagcg
     3421 accaggaggc ctggaacagt tgggacttgg tagtggtcgc ggagggcctg gagttctgga
     3481 ctgatttggc tggagtcgag gaagtggacg gtcacttgct tgtcttgggc taccttgtgg
     3541 agttttggtg cgaagcggtt gcagtaagga caggttgctc gtccgatgaa gagaacagcc
     3601 ccctctttgg tggctagaag gttctgtgcc tgctccacag tcacacttgt aaagtcttga
     3661 atgtaatctt gaaagttcat gttataagat ataaagggct ttaagcggac acggataaaa
     3721 taggaaacaa aacgacgact agttctcgtt tatctttttg gcctagtccg tagcccgtat
     3781 tcagttcaac taaatacgga agccctagtc ctttctgttt tttcttttat tataggataa
     3841 agcagagcag atttcaaaat tctgctacgc tagttgctag gcttttgctt tcaaaattcg
     3901 tcattttaag gtataatggt caaagatagt caaagaaaga ggcgatacta tggcgatgaa
     3961 gaatacatcg gattatatag aagagcacat caaagccatc ttggaccaag tcagtgtagc
     4021 tgagttgcgt cgaagtgaat tggctagtcg gtttgaagtg gtgccaagtc agattaacta
     4081 cgtcattaaa actcgtttta cagccagccg tggctatatt gttgagagta agcgtggtgg
     4141 tggtggttat attcgaattg ggcggattac cttttcggat aagcacgaac tggtccatga
     4201 tttgttaaac aatatgggtg agcagttgtc tgcgacggtt tatgcggata ttttacagct
     4261 cctttttgat gaaggattga tgacagaacg agaaggcaat ctctttttgt ccacaggatc
     4321 tgatgaaata ttaggaaaag atgcaagtac tattcgagca cgcatgatgc gtcaaatact
     4381 acgacgttta gataggaaag aggaataatt catgaaaatt tcaactggtt tacagcgggt
     4441 ttttgaagat gcccagctag tggcccaacg ttatgcctgt gattacttgg aaacctggca
     4501 tgttctcttg tctttcgtta tcaaccatga tacagtcgct ggcgctgttt tggcagaata
     4561 tcctatttca atttctgact atgaacatgc aacttttatt gtgaccgaca aggtctatcg
     4621 tgaagagttg gatagttttc gtattttacc atcttctaaa cgtttggatg aaacggctag
     4681 ttttgccaag aaaattgcag aagtcgtcaa ggctaaggag ctgggaacgg aacatttgtt
     4741 tatggctatg ttgttggaca agcggtcaac agctagtcag attttggaca aggtaggttt
     4801 ttgttttgaa gactcagatg ataagtttcg tttcttggat ttgcgtaaaa acgtggaggc
     4861 acgtgcggga tttaccaaag aggaccttaa agctatccgc agtgtgatga agggtggcaa
     4921 agccaaacct gccaatatgg gacagatgat gggaatgccc ccagcacctc aaagtggtgg
     4981 attagaagac tacactcgtg atttgacagc tttggcgcgt gaagggaaga ttgaacctgt
     5041 catcggtcga gacgctgaga ttgcacggat gatccaaatt ctatcacgta aaaccaagaa
     5101 caacccagtt ctagttggtg atgctggtgt cggaaaaact gcgcttgctt tgggtcttgc
     5161 tcaacgtgtt gctgcaggtg atgtccctgt cagcttggct aagatgcggg ttttggaact
     5221 tgacttgatg aacgttatcg ctggaactcg tttccgtggt gatttcgaag agcggatgaa
     5281 taatatcatc aatgacatcg aggaagatgg tcaggtcatc cttttcatcg atgagttgca
     5341 taccattatg ggttctggct cggggattga ttcaaccttg gatgcagcca atatcctcaa
     5401 accagctctt gctcgtggca ccctccgtac ggtcggagcg acgactcaga cagagtacca
     5461 aaagcatatt gagaaagacg cagccctggt tcgtcgtttt gccaaagtga ccattgaaga
     5521 gccgacagtt gaggacagta ttgccatttt gacagggctt aaaggtactt ttgagaaata
     5581 ccacagggtc cgtattggac aagcagctgt agagactgct gtgacctacg ctaagcggta
     5641 tttgaccagt aaaaacctac cggattcagc cattgatctg ctggatgaag ccagtgcaac
     5701 ggtacaaaat cgagtgaaag ggcaggctga ggaaacagga ctgacgagca tagacaaggc
     5761 cttgatggat aaaaaatata agactgtcag caagcttttg attaaaacga aagaagatgc
     5821 cgaggctagt caaaactatg accttgaagt aacagaagaa gatgttttag aaacacttag
     5881 ccgcttgtca ggtatcccag tagccaagct tagccaatca gatactaaga agtatctgaa
     5941 tctggaagca gaattgcaca agcgtgtgat tgggcaggaa gaagctattt ctgcagttag
     6001 cagagctatt cgccgtaatc agtcagggat tcgtacaggt cgcagaccga ttggttcctt
     6061 tatgttcttg ggaccaactg gtgtcggtaa gacagagctt gctaaagcct tggcagaggt
     6121 tctctttgat gatgaatctg ctcttatccg ttttgatatg tctgagtata tggagaaatt
     6181 tgcggccagc cgtctcaatg gagcgcctcc aggctacgtg ggctatgaag aaggtggcga
     6241 attgacagaa aaagttcgta acaaacctta ttctgttctt ctttttgatg aggttgaaaa
     6301 ggctcatcca gatattttca atgttctctt gcaggtcttg gatgatggtg tcttgacgga
     6361 cagtaaggga cgtaaggttg atttctcaaa taccattatt atcatgacgt caaaccttgg
     6421 agcaacagcc cttcgtgatg ataagacagt tggttttggt gcccttgatt tgtctaagga
     6481 ccacaaggaa gtggagaaac gcatttttga ggaattgaaa aaggcctacc gtcctgaatt
     6541 tatcaaccgt attgatgaaa aagttgtctt ccatagtttg accgaatccg atatgcagga
     6601 tgttgtcaag gtcatggtca aaccgttgtt tgcggtaaca gctgagaaag gaattactct
     6661 taaactgcaa ccgtcagccc ttaagttatt ggctaaacaa ggttacgacc cagaaatggg
     6721 ggctcgtcct cttcgtagac tcttacaaac caaattggaa gatccgttgg cagaaatgtt
     6781 gctccgtggt gacttggcta ctggttcgac cctgaaggtt ggggtcaagg gtgaagagct
     6841 caagtttgat gtggtaaagg gataaggagt gcttgttgtt gctatccttt ccagatgcag
     6901 aattattctt ccgttttgaa aaacgcatga aatagttgga gaggtgagct tgctcgcctc
     6961 tttaacgatt agaaaggaaa tctatgaatc aaaccatagc tgttgttttc ggaacttttg
     7021 cccccatgca caagggacac ttggatttga ttgaacgagc aaagttagct tgcggtcagg
     7081 tttgtgtggt ggtttcaggc tatgataggg atcgtgggga taggataggt ttagacctga
     7141 ccaaacgatt tcaatttgct caagagcagt ttaaggaaga tgattttgtc gaagttcgtg
     7201 ccctggatga aacggacttg cctccctatc cagatggctg ggacctttgg ttagaacgcc
     7261 tgcttggttt attggacttg tcagaacatc aagtaccagt tttctatgtg tctgaggaag
     7321 aatacgctca ggaactgcat aggcgaggct atcaagccca ttatagtcct agaaaatttg
     7381 gtatttcagc gaccctcatt cgtgaacatc ctcaacaata tcaggattac attgctcctg
     7441 cctttcttgc tttttttgga aaggaaagac tgtaaaacaa catagaaaaa aagcataaaa
     7501 tcaggttaca gcctaggttt tatgcttttt ttactacgga tttttacgga aattccatgt
     7561 attctaacga acgttcgtaa atgtcttgta tatatgcaaa aaaattcaaa attttttga
//
LOCUS       DASGCC010000094         7506 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.094, whole genome shotgun sequence.
ACCESSION   DASGCC010000094 DASGCC010000000
VERSION     DASGCC010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7506
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.094"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(54..1721)
                     /gene="dnaX"
                     /locus_tag="U1404_001474"
     CDS             complement(54..1721)
                     /gene="dnaX"
                     /locus_tag="U1404_001474"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEM5348419.1"
                     /translation="MYQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSG
                     PRGTGKTSAAKIFAKAMNCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDE
                     IRDIRDKSTYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHK
                     IPATILSRVQRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALS
                     ILDQALSLSQDQQVTLEIAEEITGSISLRALDDYVASLRQGDSVTALQHLQTLFDQGK
                     SMSRFATDLLHYLRDILIVQTGGEDTHLTTGFSENLALEQARIFTMIEMVTRGLADIK
                     SSPQPKIYAEMMTIRLAEDSSPSGAMAELPADLLGQLASLQQQVADLQKQLGQLSSQP
                     SAVKPVSRKPQAPKKYRLDTSKVHAILQEAMENPTLARENLTRLQNAWGEIIESLSGA
                     DRALLVGSQPVAANENHAILAFDSPLNAEQTMKRDNLNTMFGNILSKAAGFSPQILAI
                     AQEDWVSIRAEFSAKAKGQKTQEIEKEASPVPEEFGFLADTVEIRND"
     gene            complement(1721..2218)
                     /locus_tag="U1404_001475"
     CDS             complement(1721..2218)
                     /locus_tag="U1404_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEM5348420.1"
                     /translation="MTKQEKISNYQLLLAQLEALLEGETNALANLSNASALLNQALPN
                     SVFTGFYLYDGSELILGPFQGGVSCVHIALGKGVCGEAAAKRQTILVDDVRLHDNYIS
                     CDATALSEIVVPMVKNDQLLGVLDLDSRLVADYDTIDQDYLEKFVALLVEKTDWNFAM
                     FGEKR"
     gene            complement(2283..2552)
                     /locus_tag="U1404_001476"
     CDS             complement(2283..2552)
                     /locus_tag="U1404_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM5348421.1"
                     /translation="MSIKQMVSMALVVWNLVVFITYGMDKGKARKNAYRISEKTLLLM
                     SYFGGGLGAWAGGTHFRHKTQKKYFQLAWAIGVLIDAVIMYWMWK"
     gene            complement(2640..3180)
                     /locus_tag="U1404_001477"
                     /pseudo
     CDS             complement(2640..3180)
                     /locus_tag="U1404_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775286.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
     gene            complement(3182..3811)
                     /gene="udk"
                     /locus_tag="U1404_001478"
     CDS             complement(3182..3811)
                     /gene="udk"
                     /locus_tag="U1404_001478"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM5348422.1"
                     /translation="MTQKPIIIGVTGGSGGGKTSVSRAILDNFPNARISMIEHDSYYK
                     NQSHLTFEERILTNYDHPLAFDTDLMIYHISELLAGRSVDIPIYDYTQHTRSEKTYRQ
                     EPQDVFIVEGILVLEDKRLRDLMDIKIFVDTDDDIRIIRRIKRDMEERGRSLDSIIEQ
                     YTSVVKPMYHQFIEPTKRYADIVIPEGVSNVVAIDLINTKVESILRERG"
     gene            3894..4880
                     /locus_tag="U1404_001479"
     CDS             3894..4880
                     /locus_tag="U1404_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM5348423.1"
                     /translation="MLNFGIVGTSDISHRFIEAAHLSGHYQLQAVFSRKLETAAAFSE
                     QYEGVDLYTEWVKFLSAPIDVVYIASPNALHFEQAKAVLAAGKHAIVEKPMVSTPQEL
                     EQLRRVAQENNVFLFEAARNYHEQAQAIIREFLTDKTILGGSFGYAKYSSKMPELLAG
                     QMPNIFSTDFSGGALMDLGVYTLYAAIGILGTPRTARYVAQQLPSSIDLNGSGQLIYD
                     NYIVHIQAGKNITSNLASEIYTNDGTLTLNACQYISSAIFTKHDGEQIVLPIQAAQHP
                     MLEEALEIAQAIKQQNRKLVDQWLAVAESVHQTLYTMRQDAGIIFKADNNEI"
     gene            4870..5952
                     /locus_tag="U1404_001480"
     CDS             4870..5952
                     /locus_tag="U1404_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5348424.1"
                     /translation="MKSKFPSSWTDQLTLLGFEDFTPIQVQAFEPIANGKSLLAISPT
                     GTGKTLAYLWPSLLALTPKKAQQLLILAPNTELAGQIFDVCKTWSETIGLTAQLFLSG
                     SSQKRQIERLKKGPEILIGTPGRIFELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFV
                     EKIINYVPRDHQLIYMSATAKFDRQKIAEDIESIDLSEQKLDNIQHCYMMVDKRERLE
                     TLRKFANIPDFRALAFFNSLSDLGASEDKLLYNGVNAVSLASDVNVKFRKVIIERFKN
                     HELNLLLATDMVARGIDIDNLECVLNFEVPFDQEAYTHRSGRTGRMGKEGLVITLVSS
                     PSELKQLKKYASVQEVILKNQELYKI"
     gene            complement(6019..7416)
                     /locus_tag="U1404_001481"
     CDS             complement(6019..7416)
                     /locus_tag="U1404_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM5348425.1"
                     /translation="MKKVSFWLGINIALLGIMVSLAVWLFAGLQERQVSQFIEEKQQT
                     ILAKGKGKIQEGNIDTTHVVAALPTDDAGHVLGPVESRMISYVQRRFGHKKPAGKIQN
                     LVFVSSIEGKTNFKNVTAREIQAEQYKVDNLQIKKQDKLPSERVLLTQDNKLFTLEDL
                     LPNLSSTASIIVGHLREALLAQGMKETDVEAIVKKFETLDLNAISFSYGDSQLTLQLP
                     DGYGINQLVLPISDLYPVVKSDYLVDADKVGYDEYMAAQVVDKKHLRQVALTFDDGPN
                     PNTTPVVLDLLKKYNAKATFFVVGKAVAGNEAILRRMVAEGHVIANHTWNHPNLVTIS
                     GEQVQREIQDTQAAITEATGIVPTMVRPPYGSVNQAVVNQIGLPSIYWSVDSKDWKSR
                     NPQAILKEIKEQTCPGSIILMHDIHQSTVDSLESVLQYLTGEGYNMVTVTDLLASPLN
                     PQLIYYSQELSGPAQ"
BASE COUNT         2157 a         1740 c         1420 g         2189 t
ORIGIN      
        1 tatagtataa aatatctatc aaaactattc atcagtctta ggactgatat tttctaatca
       61 tttctaatct caactgtatc tgcgagaaag ccaaattctt ctgggactgg actggcttct
      121 ttttcgattt cctgtgtctt ttgccctttt gctttcgccg aaaattcagc acgaatactt
      181 acccaatctt cctgagcaat agctaaaatc tgtggcgaaa aacctgcggc cttgctgaga
      241 atatttccaa acatggtatt gagattgtca cgcttcatcg tctgttcagc attaagcgga
      301 gaatcaaagg ctagaatcgc atgattttca ttggcagcaa ctggttgaga accaacaagc
      361 aaggcacgat ctgctcctga cagactctcg ataatttctc cccaagcatt ctgcaagcga
      421 gtcaaatttt cacgcgccaa ggttggattt tccatagctt cctgcaaaat tgcatgaacc
      481 ttgctggtat ccaatcggta cttcttcgga gcctgtggct tgcgtgaaac tggcttaaca
      541 gcacttggtt gactagataa ttgacctagt tgtttctgta aatccgcaac ttgttgttgc
      601 agactggcta gttgccccag taaatcagct ggcagctctg ccatggcccc cgaaggagaa
      661 ctatcttcag ccaaacgaat ggtcatcatt tcagcgtaaa tcttcggttg aggactggac
      721 ttgatgtccg ccaaacccct ggtcaccatc tctatcatgg taaaaatccg tgcctgctca
      781 agagctagat tttctgaaaa acctgttgtt aaatgcgtat cctctccacc cgtctgcacg
      841 ataaggatat ctctcaaata gtgcaaaaga tctgtcgcaa aacggctcat actctttcct
      901 tggtcaaaca aggtttgtag atgctggaga gctgtgacac tatccccttg acgcagactt
      961 gccacatagt catccaaggc acgcaagctg atagaacccg taatttcctc agcaatttcc
     1021 aaggtcactt gctggtcctg actaaggctg agagcctgat ccaaaatgga tagggcatcc
     1081 cgcatccccc cttctgcccg gcgcgcaatg attgtcagag cctgctcgtc aaagattagc
     1141 ccttccttgg tcaaaattgc agccaagtgc tcctgaatgt ccgtcacctt gatggactta
     1201 aattcaaatc gttgcaccct tgacaaaata gtagcaggaa tcttgtgcaa ttccgtcgtt
     1261 gctagaataa agaccacatt ttcagtcggc tcttccaagg tcttcaagag ggcattgaag
     1321 gctccagtag acagcatgtg gacctcgtcg atgatataga ccttataggt cgcaagacta
     1381 ggtgcatagg tcgatttatc acgaatatca cgaatctcat ccacaccatt gttggaagcc
     1441 gcatcaatct caatgacatc ttccaggcta ccttccgtaa tagcctgaca gatataacaa
     1501 tcgttacaag gctcgcctcc aacctgattg ggacagttca tggccttggc aaaaatctta
     1561 gctgccgatg tcttacccgt accacgagga cctgaaaaga gataggcatg actgattttc
     1621 ccctgttcaa tggcctgttt gagcgtggtc gcaaccacct cctgccccac catctcccca
     1681 aaggtctggc ttcggtactt cctatataaa gcttggtaca ttagcgtttt tctccaaaca
     1741 tagcaaaatt ccagtccgtc ttctcaacca agagagcaac gaacttttct agatagtctt
     1801 ggtcaatcgt atcataatca gctaccaatc tcgaatccaa gtccaaaacg cccagcaact
     1861 ggtcgttttt caccattggc acaacgattt ctgatagggc tgtcgcatcg caggaaatat
     1921 agttatcatg tagacgaaca tcgtctacga gaatagtctg gcgcttagct gcagcctcac
     1981 cgcagacacc ctttccaagt gcaatatgaa cacaggaaac gccaccctga aaaggcccca
     2041 aaatcaattc actaccatca tacaagtaaa atcctgtaaa gacagagttt ggtagagctt
     2101 gattgagcaa agcagaagca tttgacagat tggctaaagc attggtttcg ccctctaaaa
     2161 gcgcctccaa ttgggccaat aatagttgat agtttgaaat tttttcttgt tttgtcatag
     2221 gaacattata gcatagttaa gccgactttt atagtccgag cgataaagaa aaaggcttgc
     2281 gcctatttcc acatccaata cataatcact gcatcaatca atacccctat agcccaggct
     2341 agttgaaaat actttttctg tgtcttatgc cgaaaatggg ttccacctgc ccaggcaccc
     2401 agcccgccac caaaatagga catgagtaat aaggtctttt ctgaaatccg ataggcgttc
     2461 tttcttgcct tccctttatc cataccatag gtaatgaaga caactaaatt ccaaactact
     2521 agcgccatac taaccatctg tttgattgac atacattcct ccaattaagt cacatttctt
     2581 cttactctaa cataatccaa aacaggacac aaggaaaaac gattcggaaa tccgaatcgt
     2641 tacatttccg ccagtgtatc ctctaaccat ttgagctggg cacggttgcg ttcaatagcc
     2701 cgtgtcaaaa tcaaatagtg tccataattg tcttggatac tttccttggt tgagaacagc
     2761 tcaactttac gactttctag gtgttttaag tgcttggtga ctagttcaat ttgactctgc
     2821 aacaaaccag gaatccgtgg gtcatccttt tcacggataa aaaaacatct tgattgaaaa
     2881 caagtctctt tgctgaggcg tttcttcatt tggaatggat agccattcgt ctaaaatctg
     2941 acgaccagta gccgtcatcg catactgctt ttccttttca tttccaggta ctgcatgaca
     3001 agtaatcaat tcttccttgg tcatacgttt taattctgga tagacttggc tatgggcaac
     3061 ctgccaaaat tcgcctaaat cacgttgaac atagtcggta atctgcttgc cagttaccat
     3121 ttgaccgcta gcacccataa tccctaatat gatatgaggt aatattcttt gcttcggcat
     3181 cttaaccacg ctctcttaat atactctcca ccttggtgtt aatcaagtca atagctacaa
     3241 cgttgctgac gccttcagga atgacgatat ctgcatagcg cttggttggc tcgataaact
     3301 ggtgatacat tggtttcacc accgaggtgt actgctcaat gatactatct aagctacggc
     3361 cacgctcttc catgtctctc ttaatgcggc gaatgatacg aatatcgtca tcagtatcga
     3421 cgaatatctt aatatccatt aaatcccgca accgtttgtc ttccaatact aaaatacctt
     3481 ccacaataaa tacatcttgt ggttcctgac gataggtctt ctctgaacgt gtgtgctgag
     3541 tgtaatcata aatcggaata tccactgaac gtcctgctaa tagctcactg atatgataaa
     3601 tcatcaaatc cgtatcaaaa gccagtggat ggtcataatt ggttagtatc cgttcttcaa
     3661 aggtcaggtg ggactgattc ttataataag aatcgtgttc aatcatagat atacgagcat
     3721 ttgggaaatt atccagaatg gcacgcgaca cacttgtctt gccaccccca gatccgccgg
     3781 ttacgccaat aataatgggt ttctgagtca tcatcatctc cttctatttt caatactatt
     3841 ttaccatgaa acatggtata atgaaaagga taacacaaaa gaaatgagaa tttatgctta
     3901 attttggtat tgttggcacc tcagacatct ctcatcgttt tatagaggcg gcccatttaa
     3961 gtggacatta tcagctacag gctgttttct cccgtaaact agaaactgcc gctgcctttt
     4021 cagagcagta tgaaggagtc gatttataca cagaatgggt aaaatttctt tctgccccca
     4081 ttgatgttgt ctatattgcc agtccaaatg ccctgcactt tgaacaggca aaagctgttc
     4141 tagctgctgg taaacatgct attgttgaga agcccatggt ttctacacct caggaattag
     4201 aacaattgcg tcgcgttgcc caagaaaata atgttttcct ctttgaggct gctcgaaact
     4261 atcacgaaca agctcaagcc attatccgtg aatttttgac ggataaaacg attttaggtg
     4321 gttcatttgg gtatgccaaa tattcttcta agatgcctga attgttagct gggcaaatgc
     4381 caaatatctt ttcaactgat ttttccggtg gtgctctcat ggatttaggt gtctatacgc
     4441 tctacgccgc tatcggcatt ttgggaactc ccagaacggc ccgctatgta gcacaacagc
     4501 taccttctag tattgactta aatggttcgg gacaactcat ttatgacaac tatatcgtcc
     4561 acattcaagc aggaaaaaat atcacgagca atctagcgag cgaaatctat acaaatgatg
     4621 gaacactaac actcaacgca tgccagtata tcagctctgc tattttcaca aaacatgacg
     4681 gagagcaaat tgttttacca atccaagcgg cccagcatcc tatgctcgaa gaagcgctag
     4741 aaattgcaca ggcaatcaag caacaaaacc gcaagcttgt ggaccagtgg ttggctgtgg
     4801 cagaaagcgt ccatcaaaca ctttacacca tgcgtcaaga cgcaggaata atctttaagg
     4861 cggataacaa tgaaatctaa atttccctct agctggacgg accagcttac cctacttggc
     4921 tttgaggact ttactcctat ccaagtccag gccttcgagc ctattgcaaa cggcaagtcc
     4981 cttctagcta tcagcccaac aggcacagga aaaacccttg cctacctctg gcctagccta
     5041 ttagccctaa ctcctaaaaa agcccaacaa ttgctcatcc tcgcacccaa tacagagctg
     5101 gccggccaaa tatttgatgt ttgtaagact tggtcggaga caattgggtt gactgctcaa
     5161 ctattcttgt ctggttccag tcaaaaacgc cagattgagc gactaaaaaa agggccagaa
     5221 atcctgattg gaacacctgg tcgtattttc gagttgatta aattgaaaaa aatcaagatg
     5281 atgaatatca acaccatcgt cctagatgag tttgatcagc tattctccga ttctcaatat
     5341 cagtttgttg aaaagattat caactatgta cctcgtgacc accagttaat ctacatgagt
     5401 gcaacagcta aatttgaccg tcaaaaaatt gctgaagaca ttgaaagcat tgatttatct
     5461 gagcagaaat tggataatat ccagcattgc tatatgatgg tagataagcg tgaacgtttg
     5521 gaaactctac gtaagtttgc caatatccct gattttcgtg ctcttgcatt ttttaacagc
     5581 ctatcagacc ttggtgcaag cgaagataaa ctactctata atggtgtaaa tgcagtttca
     5641 ttggcttctg atgtcaacgt aaaattccgc aaggtcatca tcgaacgttt caagaatcac
     5701 gaactcaatc ttctacttgc tacagatatg gtcgcacgcg gtatcgatat tgataactta
     5761 gaatgtgtcc tcaactttga agttcctttt gaccaagaag cctacactca tcgttctgga
     5821 cgtactggac gcatgggcaa ggaaggtctt gtcatcaccc tagtatctag tcctagcgaa
     5881 ttaaaacaat tgaaaaagta tgcctccgtc caagaagtca ttctcaagaa tcaagagctt
     5941 tacaaaatat aatgaacaat atacaaaagg cttagaatca tgttagtaga aacactggtt
     6001 ctaagccttt tatcattctt actgggctgg gccagataat tcttgtgaat aatagattaa
     6061 ttgaggattg agaggactgg cgagtaagtc tgttacagta accatattgt agccctcacc
     6121 tgttaaatat tgcaatacag actcgaggct atcaactgtt gactgatgaa tatcatgcat
     6181 taggataata cttcctggac aagtctgttc ttttatttct ttcaaaatgg cttggggatt
     6241 gcgactcttc caatctttag aatcgaccga ccaataaatc gatggaagtc ctatctgatt
     6301 gacaacagcc tggttaaccg aaccataagg agggcgaacc attgttggta caatacctgt
     6361 agcttcagta atagctgcct gtgtatcttg aatttctctc tgtacttgct ccccagaaat
     6421 agtgactaga ttgggatgat tccacgtatg gttggcgatg acgtgccctt ctgctaccat
     6481 tctacggaga atagcttcat tcccagctac agccttacca acaacaaaga aagttgcttt
     6541 ggcattatat tttttcagta aatctaaaac taccggtgtt gtgttcggat ttggtccatc
     6601 atcaaaggtt agagcgacct gtctcaaatg tttcttatcc acaacttgtg cagccatata
     6661 ctcatcatag ccaaccttat cagcatctac tagataatca ctcttcacta ctgggtacaa
     6721 atctgaaatt ggtagaacca actggttgat gccgtaacca tctggtaatt gtaaggttaa
     6781 ttggctgtct ccataactaa aggaaatagc atttaagtct agtgtttcaa attttttgac
     6841 aatcgcttct acatcagtct ctttcattcc ttgagcaagt agggcttctc ttagatgacc
     6901 aacaataata cttgctgtag aggataaatt aggtaataaa tcttccaggg taaacaattt
     6961 attgtcttgc gtcaacaaca cacgctcaga cgggagttta tcctgctttt taatttgcaa
     7021 gttgtctact ttatactgct ccgcttgaat ttcacgagct gttacatttt taaaatttgt
     7081 ttttccctct attgatgaaa caaagaccag gttttgaatt tttcctgctg gttttttatg
     7141 accaaagcgt ctttgaacat aggaaatcat tcgactttct acaggtccta agacatgacc
     7201 tgcatcatct gtaggtaagg cagccacaac atgggtcgta tcaatatttc cctcttgaat
     7261 tttgcccttg cctttagcga ggatggtttg ttgtttttcc tcgataaact gactaacctg
     7321 tctttcttga agtcctgcaa ataaccatac agccaaactt accattatgc cgagcaaggc
     7381 gatgttgatt cccaaccaaa aactaacttt tttcatatcc agcctcccat tcaaaacata
     7441 tataaactat gctaaatcat ttaaaggctc ttgtcaagac agttctataa aaactcataa
     7501 aaagat
//
LOCUS       DASGCC010000095         7485 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.095, whole genome shotgun sequence.
ACCESSION   DASGCC010000095 DASGCC010000000
VERSION     DASGCC010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7485
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.095"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            90..803
                     /gene="treR"
                     /locus_tag="U1404_001482"
     CDS             90..803
                     /gene="treR"
                     /locus_tag="U1404_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HEM5348426.1"
                     /translation="MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVR
                     KALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLTSYQELTNVLQLSTKTDVVSLDM
                     ITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
                     EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTES
                     KHKIDKFRFVDFARRKHSL"
     gene            861..1172
                     /locus_tag="U1404_001483"
     CDS             861..1172
                     /locus_tag="U1404_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348427.1"
                     /translation="MANLNRYKFTFGEKQLTLTTEHDNLFMEEIERIAQEKYQAIKEK
                     MPTADPETLALLLAINALSVQLTREMAFEQKEQELASVKEKVLKKNVTLIDLDELEDK
                     V"
     gene            1169..1717
                     /locus_tag="U1404_001484"
     CDS             1169..1717
                     /locus_tag="U1404_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM5348428.1"
                     /translation="MISLAIILILAWSFYIGYSRGLVLQAFYSMGSIIALVVATATYK
                     KLASFLYLWVPFANATQGSSNYYFDEKYLFDLDMVFYAGLAFLLIYVLVYAIVRFIGI
                     FVHLLEAFNPDTKTTNLISGALAVLVTFISLQIVMVLLSTIPLAMIQDKLHSSFLANI
                     MIQYTPFTSSFLKSLWLSNIAG"
     gene            2268..4601
                     /locus_tag="U1404_001485"
     CDS             2268..4601
                     /locus_tag="U1404_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEM5348429.1"
                     /translation="MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVQRIQ
                     QAFDELTDIAQIFVENPYFSLSATSDIGPAMRRLELDTDLNIAELLAVKKVLEVSKSL
                     LDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
                     AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTV
                     YIEPRAVVTLNEEISHLRAEERHELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRA
                     KHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQLTAIVITGPNTGGK
                     TIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHT
                     VQILAEADQDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYG
                     IETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAFEIARRLGLSDIIIQSAQFWTDTD
                     SDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENELNKARL
                     EAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAK
                     IQREAKVGDDIIVTAYGQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQP
                     KKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFIDQALLNNLAQVDIVHGIGTG
                     VIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK"
     gene            4767..5159
                     /locus_tag="U1404_001486"
     CDS             4767..5159
                     /locus_tag="U1404_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5348430.1"
                     /translation="MKKVMKVIIGILLVIGIGIGGIKLMQKIEHDQMVEIVKSEEVRE
                     IVEEQLKYLDNEALSEDGLIKTYEIDDSSIIHSPMGGISFNVFLNSDRKLRVVFELEK
                     DSNTGKIEYSGGGYSSEVKKLVGEINND"
     gene            5152..5337
                     /locus_tag="U1404_001487"
                     /pseudo
     CDS             5152..5337
                     /locus_tag="U1404_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637384.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
     gene            5441..5818
                     /locus_tag="U1404_001488"
     CDS             5441..5818
                     /locus_tag="U1404_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5348431.1"
                     /translation="MKKVMKVIIGILLVIGIGIGGFVYMQHKEHEKMVAIATSEEARA
                     VYEKHMKANDPKALTADGIIKTYEIDTETLEYNPMGGMIVRVYVNGDEDFGFHFNLLQ
                     NEDGKFKSGSYVIKSKLADLLGK"
     gene            5865..6122
                     /locus_tag="U1404_001489"
     CDS             5865..6122
                     /locus_tag="U1404_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348432.1"
                     /translation="MTEYNNLGKGDAVITQYDDIVGRVTLDFDNENGNGEQVYAVVKD
                     PNLPEDQVTEVMVLFRGSTGSNEVLTKPADVWNDWGESILS"
     gene            6217..6606
                     /locus_tag="U1404_001490"
     CDS             6217..6606
                     /locus_tag="U1404_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5348433.1"
                     /translation="MKIVVKILVGILIAIAIGIGGFKLMQKIEHDQMVEIVKGEEVRK
                     MVEERLISYDAKALTEEGIIRSYSIDSASIRRNPMGGINFSVYLNNDDTLYINYRIEK
                     IRDDIVKLVGGGKSSDLTRLLGEEANE"
     gene            6599..>7485
                     /locus_tag="U1404_001491"
     CDS             6599..>7485
                     /locus_tag="U1404_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM5348434.1"
                     /translation="MNNSKTNRDLTDFDRQQVASEEYTPYLKGNEVVITNFFEEELTI
                     GTVRKVLKDATGLDGYVVEEPDGNVIVLFQGSKGPGKEGAAADWMDNDLPMTHNIISN
                     KSEVTPQLQSASRILNQVLKDYPNAQITVYGHSLGSMNAQYALAAVSDIDRIAGAYIY
                     NGPNVYPALTEAGKARVNALKYRIHNYIDQKDFVPIGYSGKDAPGYKSTAGTSEGAIG
                     IVYRVDSKTNLNPIDQHVWGGYQWNADGSLKVKEGSSKLEQHYSNALHHVSSEMYHYA
                     TLKATLSRGGFSSRETIYL"
BASE COUNT         2309 a         1336 c         1748 g         2092 t
ORIGIN      
        1 tttttgctta gtttttttaa ttttgaaatg aattttgtta taatgttgat agttgtatgt
       61 tatttgacag atgaatttgc gaggaaatga tgaaaaaata ccaagaaatt tataatgact
      121 taaaagaaaa aatacggaca aatgtttatc cggcagaaag ctccctaccg acagaacagc
      181 agcttcagga aatctatggt gttagtcgtg atacggttcg taaggcgttg gcgattttga
      241 ctgagggagg tttgattcaa aaagtgcaag ggcgtggttc aatggtcctt aagcaagaaa
      301 ttctcaattt cccagtttca ggtttaactt cctatcagga attaacaaat gttctccagc
      361 tttctaccaa gacagatgtt gtcagcttag atatgattac cgttaatagt agcctttcgc
      421 acttgacagg ctttgagccg tatagcaagg tgtggaaagt tgtccgtaca cgttcaattg
      481 acggtaaggt ctccgttgtg gatacagatt atcttgctgt cgatgtcgtg ccagagttga
      541 caactgctat tgctgaaaaa tccatctacg aatacctaga aaataagtta ggccttgata
      601 ttgcttatgc acaaaaagag attacggtag agccgaccaa tcgagaagag cgtgagctaa
      661 tgcaatcgaa ggatgattat ttggtcttga ttaaatctcg tgtctatctc ggtgataccc
      721 aacaattcca atatacagaa agcaagcata aaattgataa attccgcttt gtagattttg
      781 ctcgtagaaa gcattcttta taggagagat tagccaaatc aagtttttta cgctataata
      841 gatagaagaa gaggtaagat atggcaaact taaatcgata taaatttaca tttggcgaga
      901 agcaattaac tttgacaact gagcatgata atttattcat ggaagagatt gagcgtattg
      961 cacaggaaaa ataccaagcc atcaaagaaa agatgccgac ggcggaccct gaaaccctcg
     1021 cgcttttgtt ggcaatcaat gctctatccg ttcaactaac gcgcgagatg gcatttgaac
     1081 aaaaggaaca agaacttgca agcgtcaaag aaaaggtctt gaaaaagaat gtgaccttga
     1141 ttgacttaga tgagcttgag gacaaggtat gatttcatta gcaattattc tcattttggc
     1201 atggagtttc tacattggct acagccgtgg tctagttcta caggcgtttt atagcatggg
     1261 aagtattatt gctctggtgg ttgcaacggc tacttataaa aaattggcat ccttccttta
     1321 tctctgggtg ccatttgcca atgctactca ggggagctcc aactattatt ttgatgagaa
     1381 atatctcttt gacctagata tggtatttta tgcgggattg gcctttcttt tgatatacgt
     1441 cttggtttat gctattgtac gtttcatagg aatatttgtc catctattag aggcttttaa
     1501 tcctgataca aaaacgacca atctcataag cggcgccttg gctgtcttgg tgacttttat
     1561 ttctcttcag attgtcatgg tcttgctatc aactattccg ttagcgatga ttcaagataa
     1621 attgcacagt agttttcttg ccaacatcat gattcagtac acaccattca ctagtagctt
     1681 tttaaaatct ctctggttga gtaatatagc agggtaaggg agaccttatc ctttttatcg
     1741 tcatttatga tactcttcga aaatcaaaat cagacattgt tgacttgatt tgatgagtgg
     1801 gagtgggaaa gaactcgagc agtctaaaag agttcgtcaa caatttttcg ttttaagttg
     1861 ttgagctgaa acagtctatc cccagactgt ttcactccca cccccgcaca gttgattagg
     1921 tcggatttgg agtgtggaac acgaacaaat ctgccaatca accactgcgc tgagatgttg
     1981 acacgaattc tgagaagcga ggatggactt tctgcccagc ctcagcctgt tcccttgaca
     2041 tataaaagga acagagttct atctgcatca gagcgaaacg aactacgttc gcctatttcc
     2101 aacctctaaa ggttcccacg aacccttgga gcaagtctga ttttgatttt cattgagtat
     2161 tagttgactg ttataacttt aatgtaagag attgggaaag actatatttt tatcttttat
     2221 tgttttgata atgagataaa gctaaggaaa agactaagta ggaacatatg aataataaaa
     2281 ttattgaaac ccttgaattt cacaaggtaa gacaaaaaat tgagccctat ctcttgacgg
     2341 aacagggctt tgaagaatta cgacagttgg agcccatggt ggaagtccaa cgtatccaac
     2401 aggccttcga cgagttgaca gacatagcgc agatttttgt ggaaaatccc tatttcagtc
     2461 tgtcagctac tagtgacatt ggtccagcca tgcgtcgttt ggaattggat acagacctca
     2521 atatcgctga attattagct gttaaaaagg tcttggaagt ttctaaatct ctcttggatt
     2581 tttatggaaa tctggaaaat gtcagtctta gccagctgga taaactcttt gagaagattg
     2641 agctttttcc acatttacag ggctccctcc agtccatcaa tgatgctggt tttgtagagg
     2701 attttgcctc agaaaagctg gctcgtatta gaagaaaaat ccgtgaagct gaagatcaag
     2761 ttcgtcaggt catgcaggat attttgaaga ccaagggcga catgctgtcc gatagtattt
     2821 tggcaagccg taatggacgc aatgtccttc ctgttaaaaa tacctatcgc aataagattg
     2881 cgggtgtagt ccatgatatc tccgcttctg gctcgacggt ttatattgag ccgcgggcag
     2941 tggtgacctt gaacgaagaa atcagtcacc tacgtgcaga agaacgccat gagctcaacc
     3001 gtatcctgca ggaattatcg gatatgctcc gtccgcatag tggtgtgatc cgtaacaatg
     3061 cctggcttat cgggcatatt gatttcgtcc gtgctaagca tctctttgca cgtgaacatc
     3121 aagcagttgt acccaaacta tctgagaagc aggatattgc tcttctcaac gttcgacatc
     3181 cgctcattgc taagcctgta ccaaatgacc tttatttcgg tagtcagttg acggctatcg
     3241 tgataacagg tcccaacaca ggtggtaaga ccatcatgct taagaccttg ggattgaccc
     3301 atctgatggc ccagtctggt ttgcctatct tggctgacaa gggcagtcgg gtagctatct
     3361 tcaaagaaat ttttgcggac attggagacg aacagtccat cgagcagagt ttatcgacct
     3421 tctccagtca catgacccac acggtacaga ttttggcgga ggcggatcaa gattccctca
     3481 ttctatttga tgagttggga gctgggacag atccgcagga gggtgcgtcc ttggcaatgg
     3541 ctattttgga tgaccttcgt ctgcggggga tcaagaccat ggcgaccacc cactaccctg
     3601 agcttaaggc ctacgggata gaaacctctg gtattgaaaa tgccagcatg gagtttgata
     3661 ccaatagcct gcgtccgacc tataagttta tgcagggtgt tcctggtcgc tccaatgcct
     3721 ttgaaattgc tcgccgtctt ggtctatctg atattattat ccagtcagcc caattttgga
     3781 cggatacaga tagcgatgtg aaccgcatta tcgagaaatt ggaaagtcag acggttgaaa
     3841 gtcgtcagcg tctggataag attcgtgatg tggagcaaga aaattacaag atgaaccgag
     3901 ccctccgcaa gctctatgac gagctcaatc gtgagaggga aaatgagctc aacaaggcac
     3961 gcttggaagc caaggaaatt gtagatatgg cattggcaga aagcgaggat attctcaaaa
     4021 atctccatgc tgcagctagt cttaagcccc accagattat cgaagccaag gcagagctga
     4081 aaaagttggc gcctgaagtg gtggatctgt ctaaaaacaa ggttctgaag aaagctaaaa
     4141 ttcagaggga agccaaggtg ggcgatgaca ttatcgttac agcttatgga caacgcggga
     4201 ccttgaccaa tcagctcaag gacgggcgtt gggaagctca ggttggcttg attaagatga
     4261 ccttggccaa agatgagttt gagttagtca aggcggagaa ggcagagcag cctaagaaac
     4321 gccaggttca cacagtcaaa cgtgccaatg tacgaggacc aaaagcccgc ttagatctcc
     4381 gtggcaaacg ctacgaagag gctatgatgg agctggatga atttatcgat caggcccttc
     4441 tcaataacct agcccaagtc gatattgtcc acggtatagg tacaggtgtc atccgagaag
     4501 gggtgaccaa gtacctacgc cgaaacaagc aggtcaagga gttcggctat gccccacaaa
     4561 atgcaggtgg atcaggctgt actattgtga cgtttaaata aggaattagc aaggatagat
     4621 tcagtctgtt cttgctttta tatttctgtt atacagggaa taggataggt caaaatacag
     4681 ttcaagtact tactaggtta tgctatacta tacttatgag gtaagaaata ctcttacttg
     4741 ataggatttc ataaaggagg tctaggatga aaaaagtaat gaaagttatt atcggaattt
     4801 tgttagtaat cgggattgga ataggaggaa ttaagctgat gcaaaaaatt gagcacgacc
     4861 agatggtgga gattgtgaag agtgaggaag tgagggagat tgtagaagaa caacttaaat
     4921 atctagataa tgaagctctt tcagaggatg ggctgataaa aacatatgaa atcgatgatt
     4981 cttctatcat tcatagtccg atgggaggga taagttttaa tgttttcttg aattcagata
     5041 gaaagttaag agtggtgttc gaattagaaa aggattctaa tacaggaaaa attgaatact
     5101 ccgggggagg gtattcttct gaagtgaaaa aattagttgg agaaataaac aatgactgaa
     5161 aagtatactg atcgtgatcg acagaaaatt gccaacaaag agtattcagc ttacaaattt
     5221 ggagatgagg taaatatcgg gaccctagaa caccctagat acatcggcac agtccgtcag
     5281 gtactcaaag atgcaacagg tttggatggt tatgttgttg aagagcctga cggcaacgag
     5341 tgttgtgacg gtgacggtaa cacagtttca gctgcatcta tgttatacta tgaggtaaga
     5401 aagcatctta cttgatagga tttcataaag gaggtctagg atgaaaaaag taatgaaagt
     5461 tattatcgga attttgttag taatcgggat tggaatagga ggatttgtat atatgcaaca
     5521 caaggaacat gagaaaatgg tcgctatcgc tactagcgag gaggctagag ctgtttacga
     5581 aaaacacatg aaagcgaatg acccaaaagc attaacggct gatggaatta taaaaactta
     5641 tgaaattgac actgaaacac tagagtataa tcccatggga ggaatgattg taagagttta
     5701 tgtaaatgga gatgaagact ttggctttca ttttaacctt ttacaaaatg aagatggaaa
     5761 gtttaagtct ggaagttatg ttatcaaatc aaaattggca gatttattag ggaagtagtt
     5821 catggtaaaa aaaatatgtt aatgaagata atcttcagat tgcaatgacg gaatacaata
     5881 atttaggtaa gggagatgct gtaattacac aatatgatga catagtaggt cgtgtcaccc
     5941 tcgacttcga caatgagaat ggcaatggag aacaggttta tgctgttgtg aaagatccaa
     6001 acctgcccga agaccaggtt acggaagtaa tggtactctt tcgaggctcg acaggatcaa
     6061 atgaagtgtt gacaaaacct gcagatgtgt ggaatgactg gggtgaatcg atactctcat
     6121 agatttgcgc gtctttatat ataaacatcg catttatgct atactaggag gtaagaaatg
     6181 ctcttacttg ataggatttc ataaaggagg tttggaatga aaatagttgt taaaatactt
     6241 gttggcatct taattgccat cgcaatagga ataggaggat ttaagctgat gcaaaaaatt
     6301 gagcacgacc agatggtaga gattgtgaag ggtgaggaag tgaggaaaat ggttgaagag
     6361 aggttaattt cttatgatgc caaagcgtta accgaagaag gaataataag gtcctactcc
     6421 attgatagtg cttctattcg tcgcaatcca atgggaggga taaatttttc cgtatatttg
     6481 aataatgatg atactctcta tataaattat aggatcgaaa aaataaggga tgatattgtt
     6541 aaactggtgg gaggtggaaa gtcatccgat ttaactaggt tattaggtga agaggcaaat
     6601 gaataattca aaaacaaata gagatttaac tgattttgat agacagcagg tggcatctga
     6661 agaatatact ccatatttaa aaggcaatga agttgtaatt acaaattttt ttgaagagga
     6721 actaaccatc ggcacagtcc gtaaggtact caaagatgca acaggtttgg acggttatgt
     6781 tgttgaagag cctgacggca atgtgatagt cttgttccaa ggttctaaag gtccagggaa
     6841 ggaaggcgct gcagcggatt ggatggataa tgatttgccg atgacgcaca atattatatc
     6901 taataagtca gaagtgacgc cccaacttca gtctgcttcc agaattctga accaggttct
     6961 gaaggactac cctaatgctc aaattacagt ctacggtcac tcgttaggct caatgaatgc
     7021 tcaatatgct ctggccgctg tttcagatat tgaccgcatt gctggggctt atatctataa
     7081 cggcccaaat gtttatcctg ctttgacgga agcaggaaaa gccagagtga atgctctgaa
     7141 ataccgtatt cataattaca ttgatcaaaa ggatttcgtt cctattggct attcagggaa
     7201 agatgctccc ggctataaat caactgcagg aacgagtgag ggagcaatcg gcatagtcta
     7261 tcgtgtggac agcaagacta atctcaatcc tattgatcaa cacgtgtggg gtggttatca
     7321 atggaacgcc gacggcagcc taaaagtaaa ggaaggttct tcaaaactag aacaacatta
     7381 ttccaatgct ctccaccatg tctcgtcgga aatgtaccac tatgctactt taaaagcaac
     7441 cctatcccgt ggtggcttca gttcgcgtga aaccatctat ctgga
//
LOCUS       DASGCC010000096         7340 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.096, whole genome shotgun sequence.
ACCESSION   DASGCC010000096 DASGCC010000000
VERSION     DASGCC010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7340
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.096"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(44..1321)
                     /locus_tag="U1404_001492"
     CDS             complement(44..1321)
                     /locus_tag="U1404_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5348435.1"
                     /translation="MNKQTYKEILTIAFPAMGENLLQMLMGVVDSYLVASIGIVALSG
                     VSLANNILAVYQAVFIALAAAVSSRLAQALGEGGSEGIGGTASESVKFTVFIGLLLGI
                     FSVLAGPIVLASLGAESEVVQAGGLYLILVGGGAPFWGLMASLSAILRTLGEPRFPMY
                     ISLLSNVLNALFSAFAVFVLHAGVAGVAIGTVLSRLIGCSLLWSRLPISLKPWTWSFD
                     KELLRLALPATGERLMMRVGDVVVVALITSLGTATVAGNAIGETLTQFNYMPALGIAT
                     ATIILTAKHRQDKAMVRHIFRTSFGLSLLFMFLVAGVTYFAGPFLISLYTKDIQAVQA
                     SQTVLFYAMLGVPFTAGTLIMTALWQGLGNARLPFYATTIGMWLVRIGIAYLLITFFK
                     IGLSAIWIATILDNAFRAGVLFFQYRYSKQESI"
     gene            complement(1327..2754)
                     /locus_tag="U1404_001493"
     CDS             complement(1327..2754)
                     /locus_tag="U1404_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348436.1"
                     /translation="MLSRFSDSRPAVTVKNVALTYSGADKPALQIEDLTIPEGQCVVL
                     CGQSGSGKSSFLKMLNGLTPEYYPAQLSGQIFLGDLDLQKSSLEEISRHIASVFQHPS
                     TQFFHSQVLQELVFPCENQGLSREEIENRLAWVMELFGLASLSRRTISSLSGGQQQRL
                     ALAVTAMQGTDVLVLDEPTANLDQEGIAIVEDILKTLKSQGKTIIIAEHRLSYLSQLA
                     DRYLYFQDGQVVTDYLADEFLSRTEECRQDMGLRCYDSEPYGRAIAELADQFVNDKEG
                     LLVENLSVSQKENTLYEIEKLCLASGQVVGLVGANGSGKTSLARYLVGLAEDKKSRIS
                     WQGQTLSSRQRLEKTAFVMQDVRLQLFAESVERELTLGRKNRAVDEHLVARFGLSDLL
                     ERHPVSLSGGEQQRVMIVASLLADKEIFIFDEPTSGLDLRRMQQVASALVDLKMKNKL
                     VLLISHDEELLNLVCDKIVDIKQLK"
     gene            complement(2718..3377)
                     /locus_tag="U1404_001494"
     CDS             complement(2718..3377)
                     /locus_tag="U1404_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5348437.1"
                     /translation="MKLDARTKIILVIFTSFTYGMRLTILENAVLVLGLSLLFWFSGK
                     RKMAIMSPIAYSIFCLLSYITFLPAWLTHLLLVLTYTWPPLLAGHLLLMTTSGYELIH
                     GLRKWHLPEVFLLTLGVMFRFLPAIKQDARTIFASLKVRGIFLRKRDVVCKPLQYMEV
                     FLVPLMMSLLRTAQELTVASLTKGLAVSTKSPAYIRSSWTVLDWSLCLCCLGFLILVR
                     L"
     gene            complement(3374..3967)
                     /locus_tag="U1404_001495"
     CDS             complement(3374..3967)
                     /locus_tag="U1404_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MptD family putative ECF transporter S
                     component"
                     /protein_id="HEM5348438.1"
                     /translation="MKKLQVKDLMVTGAFAALYFVCVGLGTLLSLVFDRSGNMMYAPA
                     GAALLAGPVYMLLIAKVGKPGSISLVGAVMACFFFLSGYMTAAFLPSLTFGFLAEMVA
                     KSGHYKQKWTNLLSYIIFSFGNLGPIILMWFMRDAYEANLLARGKSAEYIARVMLDFT
                     PENVLWLSTTIILTALISGLFGQYMLQRYFKQSGYLS"
     gene            complement(3968..5629)
                     /locus_tag="U1404_001496"
     CDS             complement(3968..5629)
                     /locus_tag="U1404_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348439.1"
                     /translation="MDKKEMLTRVLIPRLLQSMKHLLPRIAVAVCFAVLGQVVTIAIP
                     VTLVYLAFAALAGNPAPLWTLGILILLALLRGAFRYGEHYFGHYVAFHTLAAYRRLIF
                     AKLRALAPGKLDRQDSGSLLKMIGEDIEALEVFFAHTIAPICTGILVAFGLTVYFGLS
                     SWGLALLALVTYALLAIAIPNRFAQQLEPLLKEQNASRKGYVSYFIESLKSMKDLMQF
                     QQTDARFAKLTQKSQEVNGQERKVAQTNFMQYAVSFLVVGLSIMCFAWLTFDLVGSQS
                     LDLATGVALLVSFTSSFAPFLELSRLPLGFKRAMNAGRNIYALLDEKEAERTGELVEV
                     RVTDIAIEQLDFDYDDRETGLYRNLSVQFEQGGIIGLVGESGAGKSTLMKLIMRWYDW
                     QQGQIRLSGLDSRQVDKAHLQGAFAYVPQVPQIFRQTIRENLLLGRTDVSDETIMDLA
                     EKCHMKERILAAPQGLDTLVEASDFSAGEGQRLELMRALLKNADCYIFDEPTSNLDSL
                     NEARFIQLVKEHCQGMVFLISHRSSTMACADTIFYLEDGQLVKEK"
     gene            complement(5622..7301)
                     /locus_tag="U1404_001497"
                     /pseudo
     CDS             complement(5622..7301)
                     /locus_tag="U1404_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921862.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
BASE COUNT         2264 a         1884 c         1455 g         1737 t
ORIGIN      
        1 agctacaaac ttaaaagaaa ctgaaaattt tcttagcctt atcttaaatt gattcttgtt
       61 ttgaatacct atactgaaaa aatagcaccc ctgctcggaa ggcattatct aaaatcgttg
      121 caatccaaat ggctgacaaa ccgattttaa aaaatgttat aagtaaataa gctatgccaa
      181 tccgcactag ccacataccg atagttgtgg cataaaaggg taatctagca tttcccaaac
      241 cttgccaaag agctgtcata ataagagtgc ctgctgtaaa gggaactccc aacatggcat
      301 aaaataatac tgtttgacta gcttgtaccg cttgaatatc cttagtataa agactgatta
      361 ggaaaggccc cgcaaaataa gtcacaccag ccaccaaaaa cataaacagt aaagaaaggc
      421 caaagcttgt tcgaaaaata tgtcgaacca tagccttatc ctgtctgtgt tttgctgtaa
      481 ggatgattgt agcggtagca atccctaaag ccggcatata gttaaactgc gtcagggttt
      541 ctccaatcgc atttccagct accgtcgctg ttcctaagct ggtaatcaac gccacgacta
      601 ccacatctcc cacccgcatc atcaaccgtt caccagttgc tggcagagca agtctaagca
      661 gttctttatc aaaggaccag gtccatggtt ttaaagaaat tggtaagcga gaccaaagca
      721 ggctacaacc aatcaaccgc gataagaccg tgccaatcgc aactccagct acacctgcat
      781 gaagcacaaa gactgcaaat gctgaaaata gtgcatttag aacgtttgag agcaggctga
      841 tatacatagg aaaacgtggt tcccccaagg ttcgtaagat tgcactcaaa cttgccatga
      901 gtccccaaaa aggtgctccc ccaccaacca atatcaaata aagacctcca gcctgtacca
      961 cttctgactc tgcccccaag ctagcaagta ctattggacc tgccagaact gaaaaaattc
     1021 ctaaaaggag accgataaaa actgtaaact tgacactttc actagcagtt cctccaatgc
     1081 cttctgaacc cccttcaccc aaagcctgag ccaaacgaga agacaccgct gctgctaggg
     1141 caataaaaac cgcctgatag acggctaaaa tattattagc aagggaaact ccagacaagg
     1201 ctacgatgcc aatactggct actagataag agtctactac ccccattaac atctggagaa
     1261 ggttttcccc catggctgga aaggcaatgg ttaaaatttc tttataggtt tgtttgttca
     1321 taatctctat ttcaactgtt taatatctac tattttatca caaaccagat tcaatagctc
     1381 ttcatcgtga gaaattaaca aaaccaactt attcttcatt tttaagtcta ctaaagcgga
     1441 agcaacttgc tgcattcgtc tcaaatccaa accgctcgtc ggttcatcaa aaatgaaaat
     1501 ttccttatct gccagtaagc tggccactat catcacacgc tgttgttcac cgcccgataa
     1561 actgaccgga tgtctctcca acaaatccga tagaccaaaa cgagctacca aatgttcatc
     1621 gacagctcta tttttccttc caagagtaag ttctcgctca acactttccg caaatagttg
     1681 gagtcgaaca tcctgcataa caaaggctgt tttttccaat ctctggcgac tagataaggt
     1741 ttgaccttgc caagaaatcc tactcttctt atcttccgct aaaccgacca gataacgagc
     1801 aaggcttgtt tttccagaac cattcgctcc aaccagaccc accacctgtc ctgatgccaa
     1861 gcagagtttt tcaatctcgt agagagtatt ctctttctga cttaccgata aattttcaac
     1921 aagtaaaccc tctttatcat taacaaactg gtccgccagc tccgctattg cccgcccata
     1981 aggctccgag tcataacaac gcagtcccat atcctgacgg cattcttctg tccgacttaa
     2041 aaactcatct gctagataat ccgtcaccac ttgcccatct tgaaaatata aatagcgatc
     2101 tgccaattga ctgagataag acagtctatg ctcggcaata ataatggtct taccttggct
     2161 ttttaaagtt ttcaagatgt cctctacaat cgcaatccct tcctgatcta ggttggcagt
     2221 cggctcatct aaaaccaaga catctgtccc ttgcatggct gtaacggcca aggctagacg
     2281 ttgttgctga ccacctgata gactggaaat cgttcgccgg ctaagagaag ccaaaccaaa
     2341 taattccata acccaagcta ggcgattctc gatttcttct cttgacaaac cctgattttc
     2401 acaagggaaa accaattcct gcaagacctg actatgaaaa aattgagtag acggatgctg
     2461 aaagactgaa gcaatgtgcc gggatatttc ttccagacta gatttttgta aatccaagtc
     2521 ccctaagaaa atttgtcccg aaagctgagc aggataatat tctggcgtca aaccatttaa
     2581 catcttgaga aaactagact tcccagagcc actctgccca cataaaacaa cacactggcc
     2641 ttctggaatg gtcaaatcct ctatctgcaa ggctggttta tctgctcctg aataagttaa
     2701 tgctacattt tttaccgtca cagccggacg agaatcagaa aaccgagaca acataaacaa
     2761 agactccaat ctagcacggt ccaagacgac cgaatatatg caggtgattt tgtagataca
     2821 gccaaacctt ttgtcagact ggctactgtc agttcctgag ctgttcgcaa gagagacatc
     2881 atcaagggaa ctaagaaaac ctccatgtac tggagtggct tacaaaccac atctctcttc
     2941 cgtaaaaaaa ttcctctaac cttcaaagag gcaaaaatcg tacgagcatc ctgtttaatg
     3001 gcaggtagga aacgaaacat tactcccaac gtcaaaagaa atacctctgg caggtgccat
     3061 ttccgcaagc catgaatgag ttcgtaacca cttgtcgtca tcagtaatag atgtcctgcc
     3121 aaaagcggag gccatgtata ggtcaataca agcaacaaat gcgtcagcca tgctggtaaa
     3181 aatgtaatat aggacaacag acaaaaaata gaataggcta tcggactcat tatagccatt
     3241 ttccgctttc cagaaaacca gaaaagcagg ctaaggccta agaccagcac tgcattttct
     3301 aatattgtaa gcctcatccc ataggtaaaa ctagtgaaga tgacgagaat aatttttgta
     3361 cgagcatcta atttcatgaa agataacctg attgtttaaa atagcgctga agcatatatt
     3421 gaccaaacaa accactgata agagctgtta agataatggt cgttgacaac catagcacat
     3481 tctctggagt gaaatcaagc atgacacgag cgatgtattc tgctgatttt ccacgtgcca
     3541 aaagattggc ctcataggca tctcgcatga accacataag aataataggt cccaagtttc
     3601 caaaagagaa aatgatatag ctaagaagat tggtccattt ttgtttatag tgacctgact
     3661 tcgctaccat ttctgccaaa aaaccaaagg tcaaacttgg gagaaaggcc gctgtcatat
     3721 agcctgacag gaaaaagaaa caggccatta ctgctccaac cagactaatt gaacccggct
     3781 tcccaacctt ggcaatcaag agcatataga ctggaccagc taagagagct gctccagctg
     3841 gtgcatacat catattaccc gaacgatcaa aaaccaagct caacaaggtt cctagaccaa
     3901 cacaaacaaa gtagagggca gcaaaagccc ctgttaccat cagatctttt acttgtaatt
     3961 tcttcattta tttttccttt actaattgcc cgtcttccaa gtagaaaatg gtatccgcac
     4021 aagccatggt cgagcttcta tgagaaatca agaagaccat gccctgacag tgttccttaa
     4081 ccagttggat aaagcgggct tcattgagcg agtctaggtt actagttggc tcatcaaaga
     4141 tatagcaatc cgcatttttg agcagggccc gcatgagttc caaacgttgc ccttctcctg
     4201 ctgaaaaatc actggcctcc acaagcgtat ccaagccctg cggtgctgcc aaaatccgtt
     4261 ctttcatgtg gcatttttct gccaaatcca tgatggtttc atccgacaca tccgtccgtc
     4321 ccaagaggag attttcacga atggtctggc ggaagatttg tggcacctgt ggtacatagg
     4381 caaaagcccc ctgcaaatga gccttatcta cctgccgact atccaagcca gacaggcgga
     4441 tttggccttg ctgccaatca taccaccgca taattagttt catcaaggtg gattttcctg
     4501 caccggactc accgaccaag ccaataatac caccctgttc aaactggaca gacaggttcc
     4561 gatagagccc tgtttctcgg tcatcgtagt cgaagtccag ttgttcgata gcaatgtccg
     4621 tcactctgac ctcaacaagc tcacctgttc gctctgcttc tttttcatcc aaaagagcat
     4681 agatattgcg accagcattc atagcccgct tgaaaccaag aggcagacgg ctgagctcca
     4741 agaagggagc aaaggagcta gtgaaagaaa ccagcagggc tactcctgtt gctaagtcca
     4801 aactctgact acccaccaag tcgaaggtca gccaggcaaa gcacataata gatagtccta
     4861 ccactaaaaa ggaaacagca tactgcatga agttggtctg ggcaaccttt ctctcctgac
     4921 cattgacctc ttggcttttc tgtgtcagct tggcaaagcg agcatctgtc tgctggaact
     4981 gcatcaggtc cttcatgctc ttgagacttt caataaagta ggacacatag cccttacggc
     5041 tggcattttg ctccttgagc aagggctcta actgctgagc aaaacgattt ggaatggcaa
     5101 tcgccaacag agcataggtc accagagcca gcaaagccaa accccagctg gatagaccaa
     5161 aatagactgt caaaccaaaa gccaccaaaa tccctgtaca aattggggca atagtatggg
     5221 caaagaaaac ctccaaggcc tcaatgtcct ccccaatcat cttaagcagg ctaccgctgt
     5281 cctgccgatc caatttccca ggagccaggg cccgcagttt tgcaaaaatc aaacgacggt
     5341 aagccgccag cgtatgaaag gccacataat gaccaaagta atgctcacca tagcggaagg
     5401 caccacgtaa aagagctagg agaatgagga ttcccaaggt ccatagcgga gctggattgc
     5461 cagcaagggc tgcaaaagcc agatagacca gcgttactgg aatagcaatg gtcaccacct
     5521 gtcccaagac cgcaaagcaa accgccaccg caatccgtgg caagaggtgc ttcatggact
     5581 gcaagagtct cggaatcagc acccgtgtca gcatttcttt cttatccata aacggcttcc
     5641 tccaattctc tttgttgatc gaccagctga ccataagcca agctagtctg ataaagcgtg
     5701 gcatgattgc ctgtcacagc tccttcagca gacaggaaga ggatgtcatc tgcctgctcc
     5761 acttgtttca tcttatgtgt aataataata gcaatcgcat ccttgaccac caagtcaatg
     5821 aggtcgtaaa tcaagccttc attgtcttga tcgacgctgg acgtcacctc gtcaaagata
     5881 taaagggagc gttttgccaa aaccgcacgg gcacagataa cctactggcg ttgaccaggc
     5941 gacaagaaag caccgtcgtc accaacaacc gtatccaaac cgtctggcaa attcttgaca
     6001 aactgcaaga ccccatgctg atctgcccaa gccaagatgt cctccttaga ccagtcacaa
     6061 gccatgcgta aattttcata gattgactgg ttgagcaagg ttgactggcc cgacacatag
     6121 aggacctgct cattcagaga taactgactg acacctgaaa tctcctactc acccaagtaa
     6181 atcgctccct tatccgcccg caagcgtccc aagagcagct gggccaaggt cgttttcccc
     6241 tgccctgact cacctgccaa agcatagact ttaccagccg tcatggtcat agaaatatct
     6301 tttaagactg gcttttctcc gtagacaaag gccagatttt ccagtttcaa actatcaaaa
     6361 acaggcacat ggaaagaatc gatttcctgc tccgctgtca tactgtccaa gaaaccaaaa
     6421 atgcgatccg ccatcttggt attcatcatc accaagtgca taccgtagcc ctgctcccgt
     6481 atgggtgcaa aaaactccgt cgcaatgagg acaaagaaga gcatactaaa gagggacaaa
     6541 ttgcctgctg ctaggctatt gaccgccaca aaaccagaca agccaatccc cagatacatg
     6601 accgaatcca tgtagcctac cgcttgcaac tgaaagctga gtagctccat ggtcgcatcg
     6661 cggaagtcct cggcctgctc attgaaggtc ttttcgtagg tggcatccgc ctgataggaa
     6721 tagagggtgt tgagcccctt gaggtcgtcc aggaaaagat tgcccacatc catataggaa
     6781 ctccaatagc gattcataat ccgcttggac cgcttctgca tagcgataat ggaaatggga
     6841 atcagaggca aagccaagat gaaaataacc gcacccagcg ggaaaaacag aaaaaccagc
     6901 aaaaaaacag ttgcacagtt gaactgggtc cgcagagaag atgccatgta gtaggaatag
     6961 taggtatcca ggctatcaat cccctgggaa gcgatgttaa agacatccgc tgctgtcgct
     7021 tttgacgcaa actgaccgtc cttggccaag agggcctcaa agaaggactg cttgagcgaa
     7081 tcccgtgcaa actgggagcc caagccctgc aaacgcttgg caatcaaggc cacaccatat
     7141 ccaaaggcat tgagcccgag caagatgagg acaaactgta ctaaatcaac ctgcccgccc
     7201 tcatagtatg tcacaaagcc cttagcaatc aggtaaaagg aaataatccg catcaaaaac
     7261 tgcacccagg atagaaaggc tgccaaataa accagcttca tcttgggttt gatgcgttct
     7321 ttgagtcgct tcaagagggc
//
LOCUS       DASGCC010000097         7289 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.097, whole genome shotgun sequence.
ACCESSION   DASGCC010000097 DASGCC010000000
VERSION     DASGCC010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7289
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.097"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(98..379)
                     /locus_tag="U1404_001498"
     CDS             complement(98..379)
                     /locus_tag="U1404_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEM5348440.1"
                     /translation="MARKESMAERNFKMKKDIHPEYRTVVFMDTTTGYKFLSGSTKKS
                     NETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK"
     gene            complement(459..1487)
                     /locus_tag="U1404_001499"
     CDS             complement(459..1487)
                     /locus_tag="U1404_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM5348441.1"
                     /translation="MQASSRSLRLMGTIIETRIWYPQAETILDQVEELLYLYKDRFSA
                     NDLTSELMEVNLNAGVQAVPVADDLYELIKLGKEHSLAQGSFLNITIGPLVQSWRIGF
                     SDAKLPTQEMISEKLQLINPRDIELDDEEQTVYLKKEGMAIDLGALAKGYVADKIVDF
                     LKRIGVEAGLINLGGNVLTFGQAPHNADGYWRIGIQDPQKLRGENALVLKIGEESVVT
                     SGIYERTLTVNGKTYHHILSPETGYPMESQLASLTIVSKQSVDGEIWTTRLFGQEITR
                     IYKMVEETDGIEAVLIGLDGRILVTSGLSEKVLAGEERISDSLGSPSRGGFGARVTSD
                     LASGASVL"
     gene            complement(1474..2418)
                     /locus_tag="U1404_001500"
     CDS             complement(1474..2418)
                     /locus_tag="U1404_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEM5348442.1"
                     /translation="MTIYSKIIKKIHEYDTIIIHRHKRPDPDAIGSQVGLQKLLQKNF
                     PEKTIKVTGFEEPNLAWMAGMDVVADQDYQGALVIVTDTANTARVDDDRYTQGDFLIK
                     IDHHPNEEPYGDLLWVNTEASSCSEMITELAIQSQLELDGDIARLLYAGIVGDTGRFL
                     YPATSSRTFEIVARLRQEDFDFARMSRQMDTIDFKIAKLTGYVYDNLEVDEHGAARVI
                     LTQDILEKYGVTDADTSFIVGAPGRIGIVQSWGIFVEQTDGNYRVRLRSKYLPINEIA
                     KRHDGGGHPLASGANSYSLSENEQIYQEIQEVVRNASK"
     gene            2513..2974
                     /locus_tag="U1404_001501"
     CDS             2513..2974
                     /locus_tag="U1404_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM5348443.1"
                     /translation="MALAKIVYASMTGNTEEIADIVASKLEELGLEVQVHECTTIETE
                     EILDADLIVVASYTYSYGGDGELPDEIVDFYADLADLDLTGKVYGVCGSGDTFYDDFC
                     SAVDDFDVMLGSRGATKGAENVKVDLAAEDEDIVNLEQFATDLVAKLDTMN"
     gene            3114..3383
                     /gene="rpsN"
                     /locus_tag="U1404_001502"
     CDS             3114..3383
                     /gene="rpsN"
                     /locus_tag="U1404_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEM5348444.1"
                     /translation="MAKKSKMARYQRQLELIERYADLRKSLKEKGDYQALRKLPRDSN
                     PNRLKYRDRTDGRPHAYMRKFGVSRITFRELAHLGQLPGVKKASW"
     gene            3465..3743
                     /locus_tag="U1404_001503"
     CDS             3465..3743
                     /locus_tag="U1404_001503"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEM5348445.1"
                     /translation="MNLDCIREQINTIDSQLVELLENRMELVDQVTAYKRATGKPVLD
                     TSRENAVLERVGKLVQKDDYRSAIQATFSDIMAQSRTYQSSKLANHEQ"
     gene            3733..4947
                     /locus_tag="U1404_001504"
     CDS             3733..4947
                     /locus_tag="U1404_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEM5348446.1"
                     /translation="MSNKMKQAIQLLFFSNLIGVGAGIITTLFGKILLGIGDLRSEYF
                     TFLIPFLPLAGGVIVFIYQKWGREVQAGMGLVFKAGQGEKAQISPVLIPLIISTTWLS
                     HLVGASVGREGVAVQLGASLSHWLKKHGFTHLPKDMITKIGMAAGFAGLFQTPLAASF
                     FAIEVLIVGQYSWTSLPYCLVAAFTASTTSHLLGLEKFSHTVATTSFYFTDSFKWLFI
                     ALCFGFIGNLFAWFLAQAKSISTRWLPNPYIKIAIMGVGLTVLLFFFHQGHYTGLGTN
                     LIDASLAGEQVFAFDWLLKLLLTCLCLAAGFQGGEVTPLFAIGASSGVVLAGLLGLPT
                     ELVAALGYCAVFGTATNTLLAPLFISYEVFGANILPYAIPVLAIAYLINRKQTIYGQQ
                     LRKFNNAKKPII"
     gene            complement(4968..5039)
                     /locus_tag="U1404_001505"
     tRNA            complement(4968..5039)
                     /locus_tag="U1404_001505"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5004..5006),aa:Arg,seq:cct)
     gene            complement(5237..7261)
                     /locus_tag="U1404_001506"
     CDS             complement(5237..7261)
                     /locus_tag="U1404_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HEM5348447.1"
                     /translation="MKKNIRLKSSILALVAGFSVIATQAVLADELAVQIMGVNDFHGA
                     LDMTGTARLEGETVRNAGTAALLDAYMDDSQAEFEETAAETETPAESIRVQAGDMVGA
                     SPSNSGLLQDEPTVKVFNKMDVEYGTLGNHEFDEGLDEYNRIMTGEAPKKGQFNEIVD
                     NYTREAAKQEIVIANVIDKETGEIPYGWKPYAIKTIPVNDKEAKIGFIGVVTTEIPNL
                     VLKKNYEQYTFLNEAETIAKYARELAEKGVNAIVVLAHVPATSKDGVAAGEAADMIAK
                     LNEIYPEHSVDLVFAGHNHVYTNGTTGKTLIVQATSQGKAYADVRAVYDTDIADFKAV
                     PTAKIIAVAPGQKTPSPEIQAIVDEANTIVKKVTEQKIATASQATDISREVNEFKESA
                     VGNLVTSAQLAIARKSGYDVDFAMTNDGGIRADLKVQEDGTVTWGAAQAVQPFGNILQ
                     VVQMTGEQIYTALNQQYDEGEKYFLQMSGIKYIYTKADNPTEENPYKVVKAFKEDGTE
                     IVPTETYTLVINDFLFGGGDGFSIFKEAKLIGAINPDTEVFVEYLTDLEKAGQTISAT
                     IPGRKAFVEKYVEEPKAEEKEDNAGTTTDVKTPEKANDGGDSVTNQKATEQPAPSGGM
                     APISNKKTEKASGNQTLPNTGQEALGSLLISLGGLVSLGMAVSVRRKEGE"
BASE COUNT         1959 a         1614 c         1414 g         2302 t
ORIGIN      
        1 tttatttcta taggcaaaga aaaaatggtc cactggacca taactcgctc ttttattttc
       61 aagctcgtga aaaaacagtc cgttaaggac tgttttttta tttgagaccg tattttttgt
      121 tgaagcgatc cacacgtcca tctgcttgag tgaacttttg acgtccagta tagaatgggt
      181 gtgagtctga tgaaatttcc acacggatca atgggtaagt ttcaccttcg aattcaactg
      241 tttcgttaga tttcttagtt gaaccgctaa ggaacttgta gccagtagtt gtgtccatga
      301 agacaacagt gcgatattct ggatggatat cttttttcat tttaaaattc ctttctgcca
      361 tggactcttt ccgagccata gattataacc atttaagttt accaaaagtt tgttcttatg
      421 gcaagtcttt ttacctattt ttttaatatt ttttcaagtt atagtacgga agcacctgaa
      481 gcaaggtcag aagttactct ggcgccaaat ccccctcttg aaggactgcc caagctatca
      541 gaaattcttt cttcaccagc aagaactttc tcagaaagcc ctgaggtcac tagaatcctg
      601 ccatccagcc caatcagaac cgcttcgata ccatcagttt cttctaccat cttataaatc
      661 cgagttattt cttgaccaaa cagtcgagtc gtccaaatct caccgtcaac agattgtttg
      721 gacacaatgg tcaaactagc cagctgcgac tccattggat agccggtctc aggactcaaa
      781 atatgatgat aggtctttcc attcacagta agggttcttt cgtaaatacc agaggtgact
      841 actgattctt ctcctatttt taggacgagg gcattttcac cacgtagttt ctgaggatcc
      901 tgtataccaa ttcgccaata gccatctgca ttgtgaggag cttgaccaaa ggtcaggacg
      961 ttgccaccca gattaatcag tccagcctcc acacctattc ttttcaagaa gtccacaatc
     1021 ttatctgcta catatccttt agcaagagca cccagatcaa tcgccatacc ttcttttttc
     1081 aaatagactg tctgctcctc atcatctaat tcgatgtccc ttggattgat gagctggagt
     1141 ttttcactga tcatttcttg ggttggaagt ttggcgtcgc taaatccaat ccgccagctt
     1201 tgtacaaggg gaccaatggt aatattcaaa aaagatccct gagccagact gtgttctttg
     1261 cccaatttaa tcaattcata caggtcatcg gcaacaggaa ccgcctgaac acccgcattg
     1321 aggttgacct ccattaattc agaggtcaag tcattggcag aaaaccgatc cttgtagaga
     1381 tagagaagct cttctacctg atccaaaatc gtttctgcct gaggatacca tattctggtt
     1441 tcaatgatgg ttcccataag acgaagggag cgactacttg cttgcattcc tcactacctc
     1501 ttggatttct tggtatattt gctcattttc ggagagtgaa taagagttag caccacttgc
     1561 tagtgggtgg ccaccgccat catggcgttt ggcaatctcg ttgattggaa gatacttact
     1621 gcgcaaacgg actctgtaat ttccgtcagt ttgttccaca aaaatccccc aagattgaac
     1681 gattccaatc cgtcctggcg cacctacgat aaaggaagtg tccgcatcgg tcaccccgta
     1741 tttttcgaga atgtcctgtg tcaaaataac acgcgccgca ccatgttcat ccacttccaa
     1801 gttgtcgtag acgtaacctg tcaacttggc aatcttgaaa tcgatggtat ccatctggcg
     1861 agacatcctt gcaaagtcaa aatcttcttg gcggagacga gcaacaatct caaaggtgcg
     1921 cgagctggtt gccggataga gaaagcgacc tgtatcgccc acaattcctg catagagtag
     1981 acgagcaata tctccatcga gttccagttg gctttggatg gctagttccg taatcatttc
     2041 actgcatgag ctggcttccg tattgaccca gagcaggtca ccataaggct cttcattggg
     2101 gtgatgatcg attttaatca agaaatctcc ttgggtatag cggtcgtcat ccacacgcgc
     2161 cgtattggca gtgtctgtca cgataaccaa ggctccttga taatcttggt ctgcaactac
     2221 gtccattcct gccatccaag caagatttgg ttcctcaaaa ccggttacct tgatggtttt
     2281 ttcaggaaaa ttcttctgca agagtttctg caagccaact tgactaccaa tggcatccgg
     2341 atctggtcgt ttatgtcggt gaataataat cgtgtcgtat tcgtgaattt ttttaataat
     2401 tttactgtaa attgtcatag caactccttt tcatcatttt agcataaact tccccttttg
     2461 aaaatgatgg gagtgtggta taatgggatt actatgtaat ttggaggaaa ttatggcact
     2521 agcaaaaata gtttacgcta gtatgactgg taacacagaa gaaattgctg acatcgtcgc
     2581 cagtaagcta gaagagttag gtttggaagt acaggttcac gaatgtacga ctattgaaac
     2641 cgaagaaatc ttggatgcgg acctcatcgt ggtagccagc tacacctatt cttacggtgg
     2701 agacggtgag cttccagatg aaattgttga tttctatgct gacctagctg acttagattt
     2761 gaccggtaag gtctacggtg tttgtggttc tggcgatacc ttctatgatg acttctgtag
     2821 tgcagtagat gactttgatg tcatgttggg ttcacgtggt gcaactaagg gtgccgaaaa
     2881 tgttaaggta gatcttgccg ctgaagatga ggatattgtt aaccttgagc aattcgcgac
     2941 agaccttgtt gctaaactag atacaatgaa ttaactgaca aacagactgg cttatcaata
     3001 ggtctagtct gttttctttt agccttttat taagattgta cacctattgc ttgcaatctt
     3061 aatagttttg atatataatt aactggttaa gttttttgaa aaaggagaat tttatggcta
     3121 aaaaatcaaa aatggcacgc tatcagagac agttggagtt aatcgagcgc tatgcggatt
     3181 tacgtaaaag tctcaaagaa aaaggtgact atcaagcact tcgaaaattg cctcgcgact
     3241 caaatccaaa tcgactgaaa taccgcgaca ggaccgatgg ccgtccgcat gcttatatgc
     3301 gaaaattcgg tgtgagtcgg attaccttcc gtgaattagc ccatcttggt caacttcctg
     3361 gggttaaaaa agcaagttgg taacttcctc aaacaaggct agtattctgc cttgtttttt
     3421 gctatactaa aaaacaactg aaacaatata cggaggttta taagatgaat ttggattgca
     3481 tccgcgaaca gattaacacg attgatagcc aattggttga actacttgaa aatcgaatgg
     3541 agttggtcga ccaagttaca gcctataaac gagcaacagg taagcctgtt ttggatacca
     3601 gccgagaaaa tgctgtcctt gaaagagttg gaaaattagt tcaaaaggat gattaccgtt
     3661 ctgccattca agcaaccttt agcgatatta tggcccaatc aagaacctat caatcttcca
     3721 agttagcgaa tcatgagcaa taagatgaaa caagccatcc aactcctttt cttttccaac
     3781 ttaattggag tcggtgcagg aataatcacc acactttttg ggaaaattct actagggatt
     3841 ggagacctac ggtctgaata ttttactttt ctaatcccct ttctgccact tgcagggggg
     3901 gtgattgttt tcatttatca aaaatgggga agggaagtcc aagcaggtat gggcttagtc
     3961 ttcaaagctg gacaagggga gaaagcgcaa atttctccag ttctcattcc actcatcatc
     4021 tctacaactt ggctcagtca tcttgtcggt gcttccgttg gtcgcgaagg tgtagctgtc
     4081 caacttggag ccagtctctc acattggtta aaaaaacatg gtttcacaca cttgcccaaa
     4141 gacatgataa caaagattgg tatggccgca ggttttgcag ggctatttca aacaccgttg
     4201 gctgctagtt tctttgccat tgaggtatta atcgttggcc aatattcttg gactagtctc
     4261 ccctattgtc tagttgccgc tttcacggct tctactactt cccatttatt gggattagag
     4321 aaattttcgc ataccgtcgc tactacctca ttctatttta cagatagttt taaatggcta
     4381 tttattgccc tttgcttcgg tttcatcggc aatttatttg cttggtttct ggcgcaagca
     4441 aaaagcatct caactcgatg gcttccaaat ccttacatta aaatagctat catgggagtt
     4501 ggactgactg ttctactatt tttcttccat caaggtcatt atactggtct aggaaccaat
     4561 ttgatcgatg ccagtttagc tggggaacag gtgtttgctt tcgattggct actaaaactc
     4621 ctactaacct gtctttgttt ggctgcaggt tttcaagggg gcgaagttac tccgctcttt
     4681 gcgattggag caagttctgg ggttgtttta gcaggattac taggtctacc aactgaactt
     4741 gttgcagccc ttgggtattg tgccgtattt ggaacagcca ccaatacctt actggctcct
     4801 ctcttcatta gttatgaagt attcggcgct aatatcctgc cctatgctat tcctgtactt
     4861 gccatagctt atcttataaa cagaaaacag actatttatg gacagcagtt gaggaaattc
     4921 aataatgcaa aaaagcctat catctaggct ttttcgtata ctcttcatct cccctgcagg
     4981 aatcgaacct gcaactaatt cttaggagga atttgttata tccatttaac taagggaagt
     5041 ctgcttctct attgtacccc agaagagagc agattgcaag agcaaggtta tgtaagtttt
     5101 ttcaaatttt tacaaaaaag cagaacttac tctaagatga aatacttatt atttttatgc
     5161 atttctctca tgatagtctc taaaagaagt aattctagaa tgtacttcga aagtttgtcg
     5221 tttttatgct tgattcctac tccccttcct tacgtctcac tgagacagcc attccgagtg
     5281 aaactaagcc acccaagcta ataagaagtg agcctagggc ttcttgaccg gtatttggaa
     5341 gtgtttgatt tcctgatgct ttttcagttt tcttatttga aataggagcc atacctccag
     5401 atggtgccgg ttgctcggtt gctttctgat ttgttacact atcgccaccg tcatttgctt
     5461 tctcaggtgt tttcacatca gtagttgtcc cagcattatc ttctttttct tctgcttttg
     5521 gttcttctac gtacttctct acaaatgctt ttctacctgg aattgttgca ctaatggttt
     5581 gacctgcttt ttctaaatca gtcaagtact ccacaaatac ttctgtatct ggattgatag
     5641 caccaatcag tttagcttct ttgaaaatcg agaagccatc cccaccacca aataagaagt
     5701 cgttgatgac aagtgtatag gtttctgtcg gaacaatctc cgtcccatct tctttgaagg
     5761 ctttaacaac cttataagga ttttcttccg ttggattgtc agccttcgtg tagatatatt
     5821 taattccaga catttgaagg aaatattttt caccttcatc atattgttga tttaaggctg
     5881 tataaatctg ctcaccggtc atttgaacga cttgtaggat attcccaaat ggttgaacag
     5941 cctgtgctgc tccccaagta actgttccat cttcttggac cttcaaatct gcccgaatcc
     6001 cgccatcgtt tgtcattgca aagtcaacat cataacccga tttcctagcg atagctaatt
     6061 gagccgatgt tactagatta cctacagcac tttctttaaa ttcattcact tcgcgtgaaa
     6121 tatctgtcgc ttgactagct gtagcaattt tttgctctgt tactttttta acaatggtat
     6181 ttgcctcatc tacaattgcc tgaatttccg gacttggtgt tttctgccct ggtgctactg
     6241 caataatttt cgcagtcgga acagctttaa agtcggcaat atctgtatca taaacagccc
     6301 taacatctgc gtaagcctta ccttgtgagg tagcttgaac aatcaaggtt ttgcccgttg
     6361 taccgtttgt atagacatgg ttatgaccag caaatacaag gtcaactgag tgttcaggat
     6421 agatttcatt tagcttagca atcatatctg ctgcttcacc agcagccaca ccatccttgc
     6481 ttgtagctgg aacgtgagcc agtacaacta tcgcatttac acctttttca gctaactcac
     6541 gcgcatattt agcaatcgtc tctgcctcat tcaaaaaagt gtactgctca tagtttttct
     6601 tcaaaacaag attaggaatt tctgtcgtaa ctacaccaat aaagccaatc ttagcttcct
     6661 tatcattcac gggaatagtc ttaatagcgt agggcttcca accatacgga atttcacccg
     6721 tttctttgtc aataacgtta gcaataacaa tctcctgttt agcagcttca cgagtataat
     6781 tatctacaat ctcattaaac tgaccttttt ttggagcttc accagtcatg atacggttat
     6841 actcatcaag tccctcatca aactcatggt tccccaaagt cccgtattca acatccattt
     6901 tattaaagac ttttacagtt ggttcatctt gcaaaagtcc agaattcgat ggacttgcac
     6961 caaccatatc cccagcttga acacggatag actctgcagg tgtctctgtt tctgctgctg
     7021 tttcttcaaa ttctgcttgt gaatcatcca tgtaagcatc aagtaaagcg gcagttcctg
     7081 cattacgaac tgtttcccct tccaatcgcg ctgtccccgt catatcaagc gcaccatgga
     7141 aatcattaac tcccataatt tggacagcta attcatctgc caaaacagct tgtgttgcaa
     7201 taacactaaa accagctaca agagctagta tactgctttt caaccgaata ttctttttca
     7261 taagcaaaac aatgctcctt ctatttttt
//
LOCUS       DASGCC010000098         7260 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.098, whole genome shotgun sequence.
ACCESSION   DASGCC010000098 DASGCC010000000
VERSION     DASGCC010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7260
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.098"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            49..1950
                     /locus_tag="U1404_001507"
     CDS             49..1950
                     /locus_tag="U1404_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEM5348448.1"
                     /translation="MQTIFGKIVANQSAESVKTYILNQQDAAYKELLLSCQNLLNDIF
                     IFEDNWDMEPCSVGYHLAPLDWTADCHGDEEWTFMLNRQEYLWKLVLAYLVEKDSRYM
                     EQVKRFIFSWIEQVTNWHPKRTSSRTLDTAIRCLSWLNILPFLIDWGGLSEAERSQLL
                     VSIQKQLSYLHSHYRAKDTLSNWGIFQTGAMLLAHAYIGDQVDLVELHHFAHQEIQEQ
                     IQTQILEDGTQFEQSFLYHVEVYKLLLGLAFSLPDYRKQWTPILKKMADYVLQMTGPD
                     GKSVALGDSDVHCTSDILQMTAIFFEDGTYLVDNSKLDLGVLFLVGENGLRIFEHLTA
                     QPNSSGGQHFSESGHSIVKEVDSYLCFKAGPVGSAHSHSDQNSLCFYHKGQPIVIDSG
                     RFSYRECEERYLLKSAWAHSTCILDDNAPEQIKGSWEYDTYPQFISHSYKGVERCHWM
                     QGIYQAQTSQGLSYWHKRQLLMVGGDLLLIVDSVDCSGQHELISQLILDERVKIGEER
                     LNDLRLYSQKDFEIQKTVRSPRYNQLVETNKLVKKESFQDRLVTFTLLADEAIRVKQL
                     PVYQTDYHLIESGLAFSCQGKGLNILLVVSDNDIYKGEKLLQVAGYKLRGKCLVVDRD
                     KRQVVRLKN"
     gene            2046..3047
                     /locus_tag="U1404_001508"
     CDS             2046..3047
                     /locus_tag="U1404_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000412458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5348449.1"
                     /translation="MSEKFTIKDIAELAQTSKTTVSFYLNGKYEKMSKETRERIERVI
                     RETDYKPSVVARSLNSKNTKLIGVLIGDITNTFSNQIVKGIEEEAHKSGYQVIIGNSN
                     YNQESEDKYIESMLMLGVDGFIIQPTSHFRKYSRIIEDKKKHMVFFDSQLYEHRTSWI
                     KTNNYDAVYDATQLCVENGYQKFILITADISRLSTRIERATGFMDALLDCKQSYQDLT
                     IADENTDIEEIKRFLQGVVNPQEKTLVFVPNCWALPLVFNAMKELKYDFPQVGLLGFD
                     NTEWTNFSSPTISTIVQPAFEEGCQATRMLINQIEGGNQVGRQQVLDCTVHWKDSTF"
     gene            complement(3483..4442)
                     /gene="nrdF"
                     /locus_tag="U1404_001509"
     CDS             complement(3483..4442)
                     /gene="nrdF"
                     /locus_tag="U1404_001509"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HEM5348450.1"
                     /translation="METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDW
                     RKLTAEEKDLVGKVFGGLTLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAK
                     SYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIINEIYETGTPLEKKVASVFLETFL
                     FYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLR
                     DWMYDLLYQLYENEEGYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLFPDSADD
                     VNPIIMNGISTGTSNHDFFSQVGNGYLLGEVEAMTDDDYLYGL"
     gene            complement(4572..6731)
                     /gene="nrdE"
                     /locus_tag="U1404_001510"
     CDS             complement(4572..6731)
                     /gene="nrdE"
                     /locus_tag="U1404_001510"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000523276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HEM5348451.1"
                     /translation="MSLKELGDVSYFRLNNEINRPVNGQIPLHKDQEAVKTFFKENVL
                     PNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEFIIKIDQFLKDQNFRFKSFMAAYKF
                     YNQYALKTNDGAYYLESMEDRVLFNALYFAEGNEELALNLANEMIHLRYQPATPSFLN
                     AGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGY
                     EGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKKENADEKVR
                     VKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDITEKYDELVANPRI
                     RKTKIKARDLETEISKLQQESGYPYVINIDTANRSNPVDGKIIMSNLCSEILQVQTPS
                     VINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDFGRSVRTMTRALTYVTDHSHISAVPS
                     IEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNYWTLVESNNIAR
                     ERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSGQDWADLREKVK
                     ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYPAAGLATETI
                     PFYKSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLS
                     ILRNYAFNKGIKSIYYIRTFTDDGEEVGANQCESCVI"
     gene            complement(6764..6982)
                     /gene="nrdH"
                     /locus_tag="U1404_001511"
     CDS             complement(6764..6982)
                     /gene="nrdH"
                     /locus_tag="U1404_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HEM5348452.1"
                     /translation="MVTIYSKNDCVQCKMTKKFLDQHSVDYKEINLDEQPEFIDHVKV
                     LGFSAAPVIETENDVFSGFQPGKLKALV"
BASE COUNT         2144 a         1336 c         1613 g         2167 t
ORIGIN      
        1 ttgcccagcc tctcttcttt tggagaagcg atagagaaag gacttgttat gcaaacaata
       61 ttcggcaaaa tagtagccaa tcagtcagca gagtcggtca aaacctatat tctcaatcaa
      121 caagatgcag cttataaaga gcttctcctt tcttgtcaaa atttattaaa tgatattttt
      181 atctttgaag acaattggga tatggaacct tgttcagtcg ggtatcatct tgctcctctt
      241 gactggacag ccgactgcca tggggatgag gaatggacct ttatgctcaa tcggcaggaa
      301 tacttgtgga aattagtttt ggcctatctg gttgaaaaag attcgcgcta catggagcag
      361 gttaaacggt ttatctttag ttggatagaa caagtgacaa attggcatcc taaaagaacg
      421 agcagtcgca ccttagatac ggctatccgc tgtctaagct ggctcaatat tctcccattt
      481 ttaattgatt ggggcggact aagtgaagct gagcgtagcc aactgttagt atccattcaa
      541 aaacaattat cttatcttca cagtcattac cgtgccaaag atacgttgag caattgggga
      601 attttccaga ctggcgcaat gctcttggcc catgcttata tcggtgatca ggtggattta
      661 gtagagcttc accattttgc tcatcaggaa atccaagagc aaattcaaac tcagatattg
      721 gaagatggaa ctcagtttga gcagtctttt ctctaccatg tggaagttta taaactcttg
      781 ctaggactag ctttcagctt gccagattat cgaaaacagt ggacacctat tttgaaaaag
      841 atggcagact atgtcttaca gatgacggga ccagatggca aaagtgtggc tcttggcgat
      901 agcgatgttc attgtacttc tgacatctta cagatgactg cgattttctt tgaagatggc
      961 acctacctag tagataattc caagctagat ttaggcgttc tcttcttggt cggagaaaat
     1021 ggcttgcgca tatttgaaca cttgaccgct caacccaact cgtcaggggg acagcatttt
     1081 tctgaatcag gtcacagtat tgtcaaagaa gtggacagct atttatgttt caaggccggt
     1141 cccgtgggaa gtgcccacag ccactctgac caaaatagct tgtgctttta ccataaagga
     1201 caaccaatcg taattgacag tggtcgtttc agctaccgtg aatgcgagga gcgctacttg
     1261 cttaaaagtg cttgggctca cagcacttgt atccttgatg acaatgctcc agagcagata
     1321 aaaggttcat gggaatatga cacgtatcct cagtttatta gtcacagtta taagggggtt
     1381 gaacgctgtc attggatgca gggcatttat caggctcaga ccagccaagg cttgtcttac
     1441 tggcataaac gacagctcct tatggttgga ggcgatttat tgctgatagt ggatagcgtt
     1501 gattgctcag gccagcatga gttgatcagt caattgattt tagatgaaag agtcaagatt
     1561 ggagaagagc ggttaaatga tcttcggcta tatagtcaaa aggattttga aatccagaaa
     1621 accgtgcgtt ctcctcgata caaccaacta gtagagacca ataaactggt caaaaaagag
     1681 agttttcaag atagattagt tacatttact ctattagcag atgaagcaat tcgtgtcaag
     1741 caattgccag tttaccaaac agactatcat ttgatagaaa gtggtttggc ttttagctgt
     1801 caaggaaagg gactgaatat tctgttagtg gtttctgata atgatatata taagggagag
     1861 aaattgcttc aagtggctgg ttataagttg agaggtaagt gcttagtagt ggatagggat
     1921 aagagacaag ttgtccgact caaaaattag aagggacaga aaaaatacag tcatttctgt
     1981 gcaaaataac tgataaagta cggatagtat gatagaataa agtaactaaa ggaggtatcg
     2041 gtaaggtgtc agagaagttt accatcaaag atattgcaga actggctcag acttcaaaaa
     2101 caacagtttc cttttactta aatggtaaat atgaaaagat gtccaaagag acacgcgaaa
     2161 gaattgagag agtcattcgc gaaacagact ataaacccag cgttgttgcg cggagcctaa
     2221 attccaaaaa tactaagttg attggagtat tgattggtga tattacaaat acattttcca
     2281 atcaaattgt caaaggtata gaagaagaag cgcataagag tggctatcaa gttatcatcg
     2341 gaaacagcaa ttacaatcaa gaaagcgaag ataagtatat tgagagcatg ctgatgttgg
     2401 gtgtagatgg ttttattatt cagccgacat cgcattttag aaaatattcg cgcattattg
     2461 aggataagaa aaagcatatg gttttctttg atagtcagct ttacgaacac cgtaccagtt
     2521 ggattaagac aaataattat gatgctgtct atgatgcaac tcaactatgt gtagaaaatg
     2581 gttatcaaaa atttattctt attacagctg acattagtcg cttaagtaca cggattgaac
     2641 gagctacagg gtttatggat gctctgttag attgtaaaca aagttatcaa gatttaacaa
     2701 ttgcagatga aaatacggac atagaggaaa ttaaacgttt tcttcaaggg gtggtaaatc
     2761 ctcaggaaaa gaccctagta ttcgttccga attgctgggc gttaccctta gtttttaatg
     2821 ctatgaaaga acttaaatat gactttcctc aggttggtct tttggggttt gacaatactg
     2881 aatggacaaa tttttcatcc cctactatct ctaccattgt tcaacccgcc tttgaagaag
     2941 ggtgtcaggc aacaaggatg ctgatcaatc agattgaggg cggaaaccaa gtgggacgac
     3001 aacaggtttt agattgcaca gttcattgga aagattctac attctaagtt aagtcaaatt
     3061 ttacttctta ggaagaggag cagaacgaag tagaatattc tgattgagag ctcactgaaa
     3121 ccctccttga atcgcctaat atatacaaaa aataggaatt ttcccttaac tggtgggaga
     3181 attcctattt ttatgccaat ctcatcgaga tgatatatta acattatata cgattttaaa
     3241 ctcaacagat ttctatagtc ttttagtact aggcaatgag ccgcagacag tactggagtg
     3301 ccgcacagtt gattaggttg gatttagagt gtaaaacacg aacaaatccg ccaatcaacc
     3361 actgcgctga gatgttgaca cgaactctaa gaagtggcgc tgggcttttt gcccagcctc
     3421 acgtcaaaga taaacaaaat gactataaaa cggaaaaata gaaatgatat ttttcctaag
     3481 atctacaacc catataaata atcatcatct gtcatagctt ccacttcacc aagaagatag
     3541 ccgttaccga cttgggagaa gaagtcgtgg ttagatgtac cggttgagat accgttcatg
     3601 atgattgggt tgacatcatc tgctgaatct gggaagagtg gatcctgacc caagttcatg
     3661 agggccttgt tggcattgta acgaaggaaa gtcaagactt cctcagtcca gccgactgcg
     3721 tcatagaggg agcgtgtgta gccttcttca ttttcgtaaa gttggtagag caggtcgtac
     3781 atccagtcgc ggagtttatc ttgttcttcc tcggacaatt cattgaaacc aagttggaac
     3841 ttgtaaccga tgtaggtacc gtgcacagac tcgtcacgga tgatcagctt gatgatttct
     3901 gcaacgttgg ccagcttgtt gttaccaagg tagtagagtg gcgtgaagaa accagagtag
     3961 aagaggaagg tttctaggaa tacgctggct actttctttt caagaggtgt acctgtttcg
     4021 tagatttcgt tgataatctt tgccttgcgt tgcaaatatt cgttgctgtt ggtccattca
     4081 aagatgtctt caatctcaga cttggtgttc aaggttgaga agatagaaga gtaagacttg
     4141 gcatggactg actccatgaa ttggatgttg ttgtaaacag cttcttcgtg cggtgtacga
     4201 atatcgttgc ggagggcttg gacacctgtt tcagattgaa gggtatccaa gagggtcaat
     4261 ccaccaaaga ccttaccaac caggtctttt tcttcagcag taagtttacg ccagtcatcc
     4321 aagtcgtttg ataaaggaat acgtgtatcg agccagaatt gctcggtcaa cttttcccaa
     4381 gtagacttgt cgataacatc ctcaatggcg ttccagttta tggctttgta gtaggtttcc
     4441 atcatattct ctttcttttt cttatacttc aaatattata tcacaaatag atagtagcct
     4501 gtaaaaaaat cccctaaaag ggattttaat cgattgctta ttagttgctt cacatcgtga
     4561 acgatagtgt cttaaatcac acaactttca cattggtttg cgccgacttc ttcgccgtca
     4621 tcggtaaagg tacggatgta gtagatagac ttgatacctt tgttgaaggc gtagttacga
     4681 aggatagaga ggtcacgtgt agtttgtttg ttctcttttt tccattcata gagttctttt
     4741 gggagctcgc tgcgaaggaa aagagtgagt gacaaccctt ggtcgacgtg ttctgttgcg
     4801 gcagcataga catcgataac cttccgcata tccatgtcat aggcagattt gtagaatgga
     4861 atggtttctg ttgccaagcc agctgctgga tagtagattt taccgatttt cttctcttgg
     4921 cgttcttcaa tccgttgtgt gattgggtga attgaagcag aaacgtcgtt gatatagctg
     4981 atagatccat ttggagcaac agctaagcgg ttttgatgat agagaccgtc tgcttttact
     5041 ttttcgcgga ggtcagccca atcttgtcca cttggaatga aaatgccttc aaaaagttct
     5101 ttaacacgct cggattgtgg ttggtagtca cctgtcacgt atttatcgaa ataagtgccg
     5161 tctgcatatt ttgatttttc aaagttatgg aaagtagctt tgcgttcgcg agcaatgtta
     5221 tttgattcta ccaaggtcca atagttaagg agcatgaagt agatgttggt aaattctacg
     5281 gcagtttttg aaccgtaatc aatcaagttc tgagctaagt aagaatgaag tcccatagct
     5341 ccaagaccga tagaatgtgc ctgactgttt cctgcttcaa tagatggtac agctgaaatg
     5401 tgtgaatgat ctgtgacata agtcaaagca cgagtcatgg tacggacaga acgtccaaag
     5461 tcaggcgatt tcatcaagtt gacaatgttg gttgaaccaa ggttacatga tacatctgtc
     5521 cccattgtca agtattcctg agagtcattg atgacgcttg gtgtttgaac ttgaaggatt
     5581 tccgaacaga ggtttgacat gataatcttg ccgtcaacag ggttgctacg gttagctgta
     5641 tcgatgttga taacgtatgg atagccagac tcttgttgga gtttggaaat ttctgtttcc
     5701 aagtcacgtg ccttgatttt tgtcttacga atgcgagggt tcgccaccaa ttcatcgtat
     5761 ttttctgtga tgtcaaggta gctataaggg acaccgtatt ccaactcaac tgagtatggg
     5821 ctgaagaggt acatatcttc gtttttacgt gccaattcgt agaatttatc aggaacggtg
     5881 ataccgagtg ataaggtctt cacgcgaact ttctcatcgg cattttcttt cttagtcgaa
     5941 aggaaggaaa taatatctgg gtggaaaaca tcaagataaa cgacaccagc cccttggcgt
     6001 tgcccaagct ggttagaata ggagaagctg tcttcgaaga gtttcataac aggaacaacc
     6061 ccagaagctg ccccctcata gcccttgatt ggagcacctg cctcacgcaa gttgctaagg
     6121 gaaataccaa caccaccacc gatacgggac aattgcagag cagagttgat agaacgtcca
     6181 atcgagttca tatcgtcagt gacctggatg aggaaacaag acaccaactc accacgacgg
     6241 gcacggcctg cgttgaggaa agacggtgtt gcaggctggt aacgaagatg aatcatttcg
     6301 ttggccaggt ttagtgctaa ttcttcgttg ccttcagcaa aatacaaggc gttgaagaga
     6361 acacggtctt ccatactttc caagtagtaa gccccgtcgt tggttttgag ggcatactga
     6421 ttatagaact tgtaggctgc catgaaagac ttgaagcgga agttttggtc tttcaagaat
     6481 tgatcaattt tgatgataaa ttctgggcta tactggtcca aaaattcttt ttcaagatag
     6541 ttttcttcta atagataggc aatcttgtct aaaatactat caaattgctt ggtatttggg
     6601 aggacatttt ctttaaagaa ggtcttaacc gcttcttggt ccttgtggag tgggatttga
     6661 ccattaacag gacggttgat ttcgttattt aaacggaagt aggacacatc gcctagctct
     6721 tttaaactca tagtcgcaat ctctttctat aaacagtagg gagttaaacc aaggctttta
     6781 gttttcctgg ttgaaaacct gagaaaacat cattttcagt ttcgataaca ggtgcagctg
     6841 agaaaccgag aacttttacg tgatcgataa attctggctg ttcatctaga ttgatttctt
     6901 tataatctac actatgttgg tccaagaatt tcttggtcat tttacactgt acacaatcat
     6961 tttttgaata gatcgttacc attcaatttc tcctttgtcc atgagggatt aataaaaaat
     7021 cccaattttg ttaccaatat aggatacaag attttaaggt taaagtcaag aaggaagttt
     7081 gtttaaaatc acaaaatata gtgcacaata tttttataag acaccatata ttgtacatct
     7141 gtccaatgct gccaagtcga aacatagcgt ttacatagct gtctctattt agtttgataa
     7201 tcctagcaat ctctcggtaa agtataaatt agctttttta caaatgtcat aatattttga
//
LOCUS       DASGCC010000099         7247 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.099, whole genome shotgun sequence.
ACCESSION   DASGCC010000099 DASGCC010000000
VERSION     DASGCC010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7247
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.099"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(117..806)
                     /locus_tag="U1404_001512"
     CDS             complement(117..806)
                     /locus_tag="U1404_001512"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEM5348453.1"
                     /translation="MKFGIIAAMPQELKILVEHLQDATEIDVLGRPYYQGRIGQHEVV
                     LVQSGIGKVMSAMSVAVLADRFSVDVIVNTGSAGAVAEGIAIGDVVVANQLAYHDVDV
                     TAFGYAYGQMAGQELYYPADQVLLEQLRTVLAEQEMISHVGLIVTGDSFIAGQERIAT
                     IKTHFPEVLAVEMEGAAIAQAAVNTGKPFLVIRAMSDTAQGDANITFDEFIIQAGERS
                     AQTLIAFLEKN"
     gene            complement(815..1135)
                     /locus_tag="U1404_001513"
     CDS             complement(815..1135)
                     /locus_tag="U1404_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348454.1"
                     /translation="MGKPLLTDEILEKVKKKQYSDQSSQFGHYRPNQDISMDDALFDP
                     YLEEDYQGYEEGQTIRIPVKPTVVKSRRIETIKREAFRSKVNKILFWVIILLIMFIIA
                     VLFI"
     gene            complement(1146..1691)
                     /locus_tag="U1404_001514"
     CDS             complement(1146..1691)
                     /locus_tag="U1404_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5348455.1"
                     /translation="MNFEEKTIERTEIFKGHIFDVVVDDVALPNGGTGKRELIFHKGA
                     VCVLAVTPEGKMILVKQYRKAIERTIYEIPAGKLELGEEDTLEDAALRELEEETGYTS
                     DKLTLLADFYSAIGFCNERIRLYLADNLIKVENPRPMDEDEVIELHEVTLEEALTLVA
                     TGDICDAKTIMAIQYLQLMRK"
     gene            complement(1700..3082)
                     /gene="glmU"
                     /locus_tag="U1404_001515"
     CDS             complement(1700..3082)
                     /gene="glmU"
                     /locus_tag="U1404_001515"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEM5348456.1"
                     /translation="MSNNYAIILAAGKGTRMKSDLPKVLHKVAGITMLEHVKRAVDAM
                     EPAKTVTIVGHKAELVQAVLEGQSEFALQSEQLGTGHAVMMAEPALAGLEGQTLVIAG
                     DTPLITGESLKNLINFHVSHKNVATILTAQTDNPFGYGRIIRNADGEVQKIVEQKDAN
                     DFEKQVKEINTGTYLFDNKRLFEALKDINTDNAQGEYYLTDVISIFRQAGEKVGAYVL
                     RDFDESLGVNDRVALATAEAVMRKRINEKHMVNGVTFINPDATYIDIDVEIGAEAVIE
                     ANVVLKGQTVIGERTVLTNGTRVRDAKIAADVVISNSDIEESVIEEGVTVGPYAHIRP
                     GSLLKKDVHVGNFVEIKASTLGQGTKSGHLTYLGNATIGNNVNVGAGTITVNYDGKNK
                     FKTTVGDNAFVGSNSTIIAPVTIGDNALLAAGSVITKDIPEDAIGIGRCRQENKEGYA
                     TRFPFHPSQK"
     gene            complement(3259..3729)
                     /locus_tag="U1404_001516"
     CDS             complement(3259..3729)
                     /locus_tag="U1404_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEM5348457.1"
                     /translation="MTPTQLWQEFLAINSQAGPEPESWAFGAEADRLADLVARGIKTS
                     TSSAHALYAVEGEEIPTAGGYDIILDGQGKAVCIIQTTKVYVTPFSQVTEKHAYKEGE
                     FRQGGDLSDIKEKSLIHWRQVHEELFTIWLAEAGLTFTDDMLVVCEEFELVYPK"
     gene            complement(3726..4277)
                     /locus_tag="U1404_001517"
     CDS             complement(3726..4277)
                     /locus_tag="U1404_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348458.1"
                     /translation="MILETNRLMLRPWSETDATDLFSQASHHEVGPAAGWPVHQSVEE
                     SREIIKTVLSQPETYALVLKETGQVIGSIGLMLGKQGGLDLPDSEAELGYWLGQGFWG
                     QGLVPEACQAILNYGFNQLNLEKVWCRAFVENSKSLRVQEKLGFVYQYLLEDVHFPLI
                     DEVRSERVNLLTREEWQSRKEKL"
     gene            complement(4290..4988)
                     /locus_tag="U1404_001518"
     CDS             complement(4290..4988)
                     /locus_tag="U1404_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HEM5348459.1"
                     /translation="MTKTALITGVSSGIGLAQAEIFLENGWRVFGIDLASKPDLAGDF
                     HFLQLDLTGDLSPVFSWCQTVDVLCNTAGILDDYRPHLDIEEDELARIFAVNFFAVTR
                     LTRPYLQQMVDRQSGIIINMCSIASSLAGGGGSAYTASKHALAGFTKQLALDYAKDKV
                     QIFGIAPGAVQTGMTQKDFDPGGLADWVADQTPIGRWSQPSEIAELTLMLASGKLASM
                     QGQIITIDGGWSLK"
     gene            complement(4981..5217)
                     /locus_tag="U1404_001519"
     CDS             complement(4981..5217)
                     /locus_tag="U1404_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2829 domain-containing protein"
                     /protein_id="HEM5348460.1"
                     /translation="MTFEEILPGLKAKKKYVRTGWGGAENYVQLFDTIEVHGQRLEAT
                     PYFLINVTGEGEGFSMWSPTPCDVLATDWVEVHD"
     gene            complement(5270..6064)
                     /locus_tag="U1404_001520"
     CDS             complement(5270..6064)
                     /locus_tag="U1404_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348461.1"
                     /translation="MSKQMEYRKQIEVIESQLTKENKEYMGRINGYMMIASVFHRQEE
                     AVTAQLLSIYQDVLEAQKDGLSAEDFLGKDSKQMADDLLSYLPPIGFMEVANLSGLML
                     IIYLGSQWLMDFAGTGTISLNWLGLICDAVLSLLLPSGIFLIIRGLIYQTSKIKVWAS
                     FLYIPLLFLVICGLRLWAMPKEPDLVLTGWELLVPLTLLGLALLFFQKEKLVRYVFMP
                     SYLFMIAGGVVNMVMTVPVWLNLVLLILPAMAFWIGSAILVVRKPK"
     gene            complement(6066..6383)
                     /locus_tag="U1404_001521"
     CDS             complement(6066..6383)
                     /locus_tag="U1404_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5348462.1"
                     /translation="MKETQMLKGVLDGCVLQIISQKEIYGYELVQELRNQGFENMVGG
                     TVYPLLQKLEKNDLILSQNKPSPDGPDRKYFYLTDQGKAYLEDFWSQWTELVQKVQRL
                     KGE"
     gene            complement(6380..6544)
                     /locus_tag="U1404_001522"
     CDS             complement(6380..6544)
                     /locus_tag="U1404_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348463.1"
                     /translation="MKLDKKSRGNWKLAGITLVMAIITGWALDSILILGILLASGLMF
                     GFFTDDEEGL"
     gene            complement(6735..>7247)
                     /locus_tag="U1404_001523"
     CDS             complement(6735..>7247)
                     /locus_tag="U1404_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348464.1"
                     /translation="DSHDTFLSGSFESELWESNILPNGTNAISLAYRAYAMRGFFSFA
                     GSLFFIGLLLSLIFLMAVVLVIYFKQISEGYEDRDRFVIMTKVGLDEDQTRQSIRKQL
                     LTVFFLPILLAFVHLAFAYKMLSSILLSIGVVNAGLMLQVTVGICGGYLLLYLVVYAI
                     TTRSYKQIIS"
BASE COUNT         1994 a         1770 c         1473 g         2010 t
ORIGIN      
        1 cattttgatt gctttgaaca taaagaaaga gagaacgaag ttcgtcctct ctaggtgtta
       61 gcttttcatc tacccactac agttgacaaa gagcctgtat tgttgtcaaa atctgcttaa
      121 tttttctcca gaaaggcaat cagggtctgg gcagaacgtt ctcctgcttg aatgataaat
      181 tcatcaaagg tgatattggc atctccctga gctgtgtcac tcatggcacg gataaccaag
      241 aatggcttac ctgtattgac agctgcttga gcgatagctg ctccttccat ctctacggca
      301 aggacttctg ggaaatgagt tttgatcgta gcgattctct cctgacctgc aataaaactg
      361 tcacctgtca caatcagacc cacatggcta atcatttcct gctctgctaa aacggttctt
      421 agctgttcta acaagacttg gtcggctgga taatacaatt cctgccctgc catttgcccg
      481 taagcatagc cgaaagccgt cacatccaca tcgtggtaag ccaattgatt cgctacaacc
      541 acatcaccga tggcaatacc ttcggcaaca gctcctgccg aacctgtatt gacaatgaca
      601 tcaaccgaaa aacgatctgc caaaacagcc acggacatag ctgacatcac cttaccgata
      661 cctgactgaa caagaacaac ttcatgttga ccgattcgtc cctgatagta aggtcgaccc
      721 aagacatcga tttcggttgc atcttgtaga tgctcgacca aaatctttaa ttcctgaggc
      781 atggctgcga taattccaaa tttcatctct tctcctaaat aaataatact gcaatgataa
      841 acattatcag taagatgatg acccaaaaaa ggattttgtt taccttactg cggaaagctt
      901 ctcgcttgat ggtttcgata cggcgacttt ttactacagt aggtttgacc gggattcgga
      961 tcgtttgtcc ctcttcatat ccctgataat cttcttctag atatggatcg aatagagcat
     1021 catccattga tatatcctgg tttggacgat agtgtccaaa ctggctagat tggtcggaat
     1081 actgtttctt tttcactttc tctaaaattt catccgtcaa caagggcttg cccattgcta
     1141 gtttcctact ttctcatgag ttgtaaatat tggatagcca tgatggtctt tgcatcacaa
     1201 atatcgccag tagccaccaa ggtcaaagcc tcttccaagg ttacctcatg taattcgata
     1261 acctcatctt catccattgg acgaggattt tcaaccttaa taaggttatc tgctaaataa
     1321 aggcgaattc gttcattaca gaaaccgatg gctgaataga aatctgccaa caaggtcagt
     1381 ttgtcactag tatagcctgt ttcttcttct aattcacgca aagcagcatc ttcaagcgta
     1441 tcttcttcgc ctagctccaa tttccccgcc ggaatttcat aaatagtacg ttcaatagct
     1501 ttgcggtatt gtttgaccaa aatcatttta ccttctgggg taacggctaa aacgcaaact
     1561 gctcccttgt ggaaaatgag ttcgcgctta ccagttccac catttggcaa ggcaacatca
     1621 tctactacta catcaaaaat gtgcccttta aaaatttctg tccgctcaat ggttttttct
     1681 tcaaaattca tatgattacc tatttttgac ttggatggaa cggaaaacga gtcgcataac
     1741 cttctttgtt ttcttgacga caacgaccaa taccgatggc atcctctgga atgtcttttg
     1801 taatgacaga acctgcagcc aacaaggcgt tgtccccaat agttactggt gcgataatgg
     1861 ttgagttaga gccaacaaag gcattatctc cgacggttgt tttaaattta tttttaccgt
     1921 cgtagttgac agtaatggta ccagcaccaa cgttaacatt attgccaatc gttgcatttc
     1981 ctaggtaggt caaatgacca gacttcgttc cttgaccaag tgtagaggcc ttgatttcca
     2041 caaagtttcc aacgtgaaca tcttttttca ggagactgcc tggacgaata tgggcgtatg
     2101 gtcctaccgt cacaccttct tcaatgacag attcttcaat atctgagttg ctgatgacga
     2161 catctgctgc aattttcgca tcacgtacac gagtaccatt ggttaaaaca gtacgttcac
     2221 caatcaccgt ttgccctttc aagacaacat tagcttcaat aacagcttct gcaccaatct
     2281 caacatcaat atcaatatag gtagcatctg ggttgataaa tgtcacacca ttgaccatgt
     2341 gtttttcatt gattcgtttg cgcataacag cttctgcagt cgcaagagcg acgcgatcat
     2401 tgacacccaa actttcatca aaatcacgca atacataggc accaaccttc tcacctgcct
     2461 gacggaaaat cgaaataaca tctgtcagat agtactcacc ttgggcattg tccgtattaa
     2521 tatctttaag cgcttcaaaa agacgtttat tatcaaacaa gtaggttcct gtattgattt
     2581 ctttcacttg tttttcaaaa tcgttggcat ctttttgctc aacaattttt tgcacttcac
     2641 catcagcatt gcgaataatc cgaccatatc cgaatgggtt atcagtctga gctgtcaaga
     2701 tagtcgcaac attcttgtgg ctgacatgaa agttaatgag gttcttcaag ctttctcctg
     2761 taatcagcgg tgtatctcct gcgataacaa gggtctgacc ttccaaacct gcaagagctg
     2821 gctcagccat cataacggcg tggcctgtcc ccaactgttc agattgaagg gcaaactctg
     2881 actgaccttc gagaactgct tggaccaatt ctgccttgtg accgacaatc gttactgttt
     2941 tagcaggttc catagcatct acagcccgtt tgacatgctc caacatggta attcctgcca
     3001 ctttgtgtaa gacctttggc aagtcagact tcatgcgagt tcccttaccc gccgctagga
     3061 taattgcata gttattgctc atagttttct ctcttttcaa tgatatactc ctattatagc
     3121 aaattttgat gtttttggaa aatagcagta ttatagggaa ttttcgtaaa taaaaaagaa
     3181 actggaatga agccagtttc tcaaaaattt ctagtattag aaaacaaact acaggttgat
     3241 tgcatccaat agaattgtct atttaggata aaccaattca aattcttcac agacaaccag
     3301 catgtcatct gtgaaggtca gacctgcttc ggccagccag atagtgaaaa gctcttcatg
     3361 gacctgtcgc cagtggatta gacttttctc ttttatatca gacaagtcac ctccctgacg
     3421 aaactcgccc tccttatagg catgcttttc cgtcacttgg gaaaagggcg tcacatagac
     3481 cttggtggtc tggataatgc aaacagcttt accttgtccg tccagaatga tgtcatagcc
     3541 accagctgtt ggaatttctt ctccctctac tgcgtagagt gcatgggcag agctggtcga
     3601 ggttttgatg cctctagcca ccaaatcagc cagtcgatca gcttccgccc caaaggccca
     3661 ggactccggc tcaggaccag cttgggaatt gatagcaaga aattcttgcc agagttgtgt
     3721 aggggtcata gtttttcctt cctagactgc cattcctctc ttgtcagcag attcactcgt
     3781 tcgctacgga cctcatcaat gagtgggaaa tgcacatctt ccaagaggta ttggtaaaca
     3841 aagcccagtt tttcttggac acgtaatgat ttgctatttt ctacaaaagc acgacaccag
     3901 actttctcta aattcaactg gttaaagcca tagttcagta tagcttgaca agcttctggt
     3961 accagaccct gtccccaaaa tccctgtcca agccagtagc ctagctcagc ttctgaatca
     4021 ggcaaatcaa gaccaccttg tttaccaagc atgagcccga tactgccaat cacctgtcct
     4081 gtttctttga gaacaagggc gtaggtttct ggttggctaa ggactgtctt gataatttct
     4141 cgactttctt ccacgctctg atgaacaggc caacccgctg caggaccaac ttcatgatga
     4201 ctggcctgag aaaataagtc agttgcgtct gtttcactcc aaggtcggag catcaatcta
     4261 ttggtttcaa gaatcatcga atttcctccc tacttcaaac tccagccacc gtcaatggtg
     4321 ataatttggc cttgcatgga agccagtttg ccactggcta gcataagggt cagctctgcg
     4381 atttcactgg gctgggacca gcgtccgata ggtgtctggt ctgccaccca atccgccaga
     4441 ccaccagggt caaagtcctt ctgggtcatg cctgtttgga cggcacctgg ggcaatgccg
     4501 aagatctgga ccttgtcctt ggcatagtcc agtgccaact gcttggtaaa gcctgccaaa
     4561 gcgtgcttgg aggcggtata ggctgaacct cctccacctg ctagactgga ggcaatggag
     4621 cacatgttga taatgatgcc agactgtctg tccaccattt gttgcagata gggacgggtc
     4681 agtctggtca ccgcaaaaaa attgaccgcg aagatgcgag ctaattcatc ctcctcaata
     4741 tccaggtggg gacggtagtc gtctagaatg cctgcggtgt tacagaggac atcaactgtc
     4801 tggcaccatg aaaagacggg tgataaatcg cctgtcaggt ccagctgtag aaagtggaaa
     4861 tcgcctgcca aatcaggctt gctagccaga tcaatcccga agacacgcca gccattttcc
     4921 aaaaaaatct ccgcctgagc tagtccaatg ccgctggaaa cgccggtgat gagggctgtc
     4981 ttagtcatgg acttccaccc agtcggtcgc aaggacatcg cagggggtcg ggctccacat
     5041 ggagaagccc tcgccctcgc cggtcacgtt gatgaggaaa tagggcgtcg cctccagcct
     5101 ttgcccgtgg acctcgatgg tgtcaaagag ctggacgtag ttctccgccc cgccccagcc
     5161 tgtgcgaacg tactttttct tggccttcaa gcctggtaaa atctcttcaa atgtcatggt
     5221 ttactccttt attcttctat ctttcaacca ttataccaaa aaatcgcttc tatttcggtt
     5281 ttctcaccac caaaatcgca cttccaatcc aaaaggccat agctggcaga atgagcaaaa
     5341 ccagattgag ccaaactgga acggtcatga ccatattcac cacaccgcca gcaatcatga
     5401 acagataact aggcataaag acatagcgga ccaacttttc cttttggaaa aatagcagag
     5461 cgagaccgag caaggtgagt ggtactagaa gctcccagcc agtcaagact aagtcaggtt
     5521 ccttgggcat tgcccaaaga cgaaggccac aaattacgag aaaaagaagg ggaatgtaga
     5581 gaaaacttgc ccaaaccttg attttgctgg tctggtaaat cagaccgcga ataatgagga
     5641 aaatccccga ggggaggagg aggctaagta ccgcgtcgca gatcaagccc agccagttga
     5701 gcgaaatggt gcctgtacct gcaaaatcca tcagccattg gctgccgagg tagatgatca
     5761 gcatgaggcc actcaggttt gcgacttcca tgaaaccaat cggagggagg tagctgagta
     5821 ggtcgtccgc catctgcttg ctgtctttgc ccagaaaatc ctccgcagaa agcccgtctt
     5881 tttgagcttc aagaacatct tggtaaatgg ataagagctg ggcagtcact gcttcttcct
     5941 gcctgtgaaa aacagaggca atcatcatat aaccattgat acggcccatg tattccttgt
     6001 tttccttggt cagctgagat tcaatcactt caatctgctt gcggtattcc atttgtttgc
     6061 tcatcttatt ctcctttcaa tcgttgaacc ttttggacca attccgtcca ctggctccaa
     6121 aaatcttcta gataagcctt tccctggtct gtcagataga aatacttcct gtctggtccg
     6181 tctggcgagg gcttattctg actaagaatc aggtcatttt tttctaactt ctgaaggagt
     6241 ggataaaccg tccctccgac catgttttca aagccctgat ttctcaactc ctgaaccaat
     6301 tcataaccat aaatctcctt ctggctgata atttgtaata cacagccatc taggaccccc
     6361 ttgagcattt gagtttcttt cataagccct cctcatcatc tgtaaaaaat ccaaacatca
     6421 agcctgacgc taacaggatg cctaagatca aaatagaatc caaagcccag ccagttataa
     6481 tggccatcac aagcgtgatg cctgctagtt tccaatttcc ccgacttttc ttatccagtt
     6541 tcatactgcc tccctaccta gtttgtaata cagactagtt tgataaaaat aaaagtgatt
     6601 ttctttgtct tctatcacta gtttgtttta cctattagct ttgtatctat agtataacac
     6661 aaggcggcta gtatgtaaaa caaaatagtg aaaaatattc aaaaaaaaaa taaaaaactt
     6721 gggttgcccc aagtttagga aataatttgt ttgtaagacc gtgtcgtgat ggcatatacc
     6781 actaggtaaa ggaggagata gccaccacag atgcctaccg ttacttgcag cataagccct
     6841 gcattgacca caccaataga caacaagata gacgagagca tcttgtaggc aaatgcaaga
     6901 tgaacaaagg caagtaggat aggtaggaaa aagacggtca gcaattgctt gcgaatggac
     6961 tgtctcgtct gatcctcatc cagaccaacc ttggtcataa tgacgaagcg atctctgtct
     7021 tcatagcctt ctgaaatctg tttgaagtaa atcaccagca ccaccgccat caaaaagatg
     7081 agtgatagca agaggccgat gaagaaaagt gaacctgcaa aactgaagaa accacgcatc
     7141 gcataggcac gataggcgag actgatggcg ttcgttccat tcggtaatat attggactcc
     7201 caaagctcac tttcaaaact tcctgataaa aaggtgtcat ggctatc
//
LOCUS       DASGCC010000100         7207 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.100, whole genome shotgun sequence.
ACCESSION   DASGCC010000100 DASGCC010000000
VERSION     DASGCC010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7207
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.100"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(23..1756)
                     /gene="ptsP"
                     /locus_tag="U1404_001524"
     CDS             complement(23..1756)
                     /gene="ptsP"
                     /locus_tag="U1404_001524"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEM5348465.1"
                     /translation="MTEMLKGIAASDGVAVAKAYLLVQPDLSFETVTVEDTNAEEARL
                     DAALEASQNELSVIRENAVASLGEEAAAVFDAHLMVLADPEMIGQIKETIRAKKTNAE
                     TGLKEVTDMFIAIFEGMEDNPYMQERAADIRDVAKRVLAHLLGVRLPNPATIDEESIV
                     IAHDLTPSDTAQLNKQFVKAFVTNIGGRTSHSAIMARTLEIAAVLGTNNITEIVKDGD
                     VLAVNGITGDVVINPSEEVIAEFKVAGEAYAKQKAEWALLKDAQTVTADGKHFELAAN
                     IGTPKDVEGVNDNGAEAVGLYRTEFLYMDSQDFPTEDEQYEAYKAVLEGMNGKPVVVR
                     TMDIGGDKELPYFDLPHEMNPFLGFRALRISISETGNQMFRTQLRALLRSSVHGKLRI
                     MFPMVALLTEFRAAKAILEEEKANLLAEGVAVADDIQVGIMIEIPAAAMLADQFAKEV
                     DFFSIGTNDLIQYTMAADRMNEQVSYLYQPYNPSILRLINNVIKAAHAEGKWAGMCGE
                     MAGDQQAVPLLVGMGLDEFSMSATSVLRTRSLMKKLDTAKMEEYAHRALTECATAEEV
                     LELQKEYVDFD"
     gene            complement(1761..2024)
                     /locus_tag="U1404_001525"
     CDS             complement(1761..2024)
                     /locus_tag="U1404_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019775469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HEM5348466.1"
                     /translation="MASKDFHIVAETGIHARPATLLVQTASKFASDITLNYKEKSVNL
                     KSIMGVMSLGVGQGADVTISAEGADADDAIAAITETMEKEGLA"
     gene            complement(2180..3361)
                     /gene="icd"
                     /locus_tag="U1404_001526"
     CDS             complement(2180..3361)
                     /gene="icd"
                     /locus_tag="U1404_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEM5348467.1"
                     /translation="MAEKILMREGRLIVPDCPVIPYIEGDGIGRDIWSVSQKVIDAAV
                     KKAYAGQRSIQWREVLAGEKAYELTGTSLPNETLEIIREHLVAIKGPLGTPIGKGQRS
                     LNVALRQELDLYACVRPIRYFKGVPSPLKEPEKTDITIFRENTEDIYAGIEWEAGSDE
                     VAKVISFLQEEMGVVNIRFPESSSIGIKPISEEGSKRLIRSAIEYALEHQLKIVTLVH
                     KGNIQKFTEGGFRKWGYELAKEEFATELAEGTLVVNDIIADNFLQQILLAPENFQVVA
                     LTNLNGDYASDALAAQVGGIGISPGANINYQTGHAIFEATHGTAPDIAGKDLANPCSL
                     LLSACMMLEYIGWKEAATLIIQALEDAFINKNVTLDFAKILDVAHQSTSQFSEVLIDS
                     I"
     gene            complement(3364..4482)
                     /locus_tag="U1404_001527"
     CDS             complement(3364..4482)
                     /locus_tag="U1404_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEM5348468.1"
                     /translation="MTETNGLKDAIACDTRISAIENDRLSYAGYDIAELMENNASFEE
                     VIYLLWNLHLPTQIELNYFEKSLRKEYAISDAVEQCILIQSRRHLHPMSVLRSTVSLL
                     GVYNVHAEENSLEALYEQSIQIMGKVPTIIATFARLRRGLVPIEPRSDLGFAANFLYM
                     LNGEEPSDLQIKAFNKALVLHADHELNASTFAARVTASTLTDLYSCVTTAIGTLKGSL
                     HGGANERVFDMLLAIRESGDAERYLQKKLDSKEKIMGFGHRVYKTVDPRQEYLKEMAR
                     DLTFGTDDEAFYRLSEEVESFIKNKKGLIPNVDFYSATVYHVLGIDSDIFTLIFAMSR
                     MAGWIAHVQEQRKNNKLIRPRSSYLGGRNLVYIPIGKR"
     gene            complement(4479..7148)
                     /gene="acnA"
                     /locus_tag="U1404_001528"
     CDS             complement(4479..7148)
                     /gene="acnA"
                     /locus_tag="U1404_001528"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEM5348469.1"
                     /translation="MEKSHRKRLIHKGEEYSYYALDSISMEEKVDIHSLPYTIRILLE
                     SLLRKEDGVDVTKNHIMELLHYQAASPKGEIPFKPSRVILQDFTGVPVVVDLASMRDA
                     VVKAGGNPELINPEIPVDLVIDHSVQVDFFGTEDALEKNIALEFERNNERYEFLKWAE
                     NSFENYRAVPPATGIIHQVNIEFLSDVIINKDGLLYPDSMFGTDSHTTMINGIGVLGW
                     GVGGIEAEAAMLGEASYFPVPEVIGVRLAGQLPKVATATDLALKVTQLLRQENVVGKF
                     VEFFGPGLSSLALADRATVSNMAPEYGATCGYFPIDGETLHYMRLTNRSEEHVELTEA
                     YTKANYLFYDAERFPSYSKVLELDLSTVVPSISGPKRPQDLIELTDAKAEFQASLIRE
                     VGVRGFGLEEAELDKTATVKYVEGDEQIQTGHVAIAAITSCTNTSNPYVLLAAGLLAK
                     NAVEKGLAVSKTVKTSLAPGSKVVTGYLKKSGLQTYLDALGFNLVGYGCTTCIGNSGD
                     LRPEVAEAIKEEDLLVSAVLSGNRNFEGRINPLVKANFLASPPLVVAYAIVGNMNVDL
                     TRDPLGYDEKQQAVYLADIMPSREEVDDYIERYVTRDLYKEEYQQVFTDSQAWNAIET
                     KTDKNYNWNSSSTYIQNPPYFDNMQVDLSIKPLENLSVLAKFGDSVTTDHISPAGNIA
                     RLSPAARYLEENGIVYKDFNSYGSRRGNHEVMMRGTFANIRIKNELAAGKIGGWTRVG
                     DEILPIYDAAMKYKAAGIGSIVIAGKDYGMGSSRDWAAKGSSLLGVKAVLAESFERIH
                     RSNLVMMGVLPLQFLEGQSAESLGLTGHESYTIDLPEDVGVGQIVTVHAQIDDVTKEF
                     QALVRFDAEADIRYYRHGGILPMVVRKKLGGKV"
BASE COUNT         2105 a         1725 c         1242 g         2135 t
ORIGIN      
        1 aattccctgc ttttttcaac gattaatcga aatcaacata ctctttttga agttcaagaa
       61 cttcttctgc cgttgcacat tctgtcaagg cacggtgagc gtattcttcc atcttagctg
      121 tatcaagttt cttcataagg ctacgtgtac gaagtacaga tgttgcactc atagagaact
      181 catccaagcc catacctaca agaagtggaa cagcttgttg atcaccagcc atctcaccac
      241 acataccagc ccatttacct tctgcgtgtg cagccttgat aacattgttg atcaagcgaa
      301 ggattgatgg gttatatggt tggtagaggt atgaaacttg ttcattcata cggtctgcag
      361 ccattgtata ctggataagg tcgttcgtac cgattgagaa gaagtcaact tctttggcaa
      421 attggtctgc aagcattgct gctgcaggga tttcaatcat gataccaact tggatatcat
      481 ccgcaactgc tacaccttca gccaacaagt ttgctttttc ttcttcaagg attgcttttg
      541 ctgcacggaa ttcagtcaac aaggcaacca ttgggaacat gatacgaagt ttaccatgta
      601 ctgatgaacg aagaagggca cgcaactgag tgcggaacat ttggttacca gtctcagaga
      661 tagagatacg aagggcgcgg aaacctagga atgggttcat ttcgtgtgga agatcgaagt
      721 aaggaagttc cttatcacca ccaatatcca ttgtacgaac tacgactggc ttaccattca
      781 tgccttcaag aacagccttg taagcttcgt attgctcgtc ttcagttggg aagtcttgtg
      841 aatccatgta caagaattct gtacggtaaa gaccaacagc ttctgcaccg ttatcattta
      901 caccttcaac gtcttttggt gtaccgatat ttgctgccaa ttcaaagtgt ttgccgtcag
      961 ctgtaactgt ttgagcatct ttcaaaagag cccattcagc tttttgttta gcataggctt
     1021 caccagctac tttaaattct gcaatcactt cttcagaagg gttaatcact acatcacctg
     1081 tgataccgtt aacagccaat acatcgccgt ctttaacgat ttcagtaatg ttatttgtac
     1141 ccaaaacagc agcaatttca agtgtacgag ccatgatagc tgagtgactt gtacgaccac
     1201 caatgttcgt tacgaaagct tttacaaact gtttgtttaa ttgcgctgta tctgaaggtg
     1261 tcaagtcatg tgcgataacg attgactctt cgtcgatagt tgctgggttt ggcaagcgaa
     1321 caccaagcaa atgtgccaat acacgtttgg ctacgtcacg aatatctgcg gcacgctctt
     1381 gcatgtatgg gttatcttcc ataccttcaa agatagcgat aaacatatcc gtaacttctt
     1441 tcaaaccagt ctcagcgttt gttttcttcg cacgaattgt ttccttgatt tgaccaatca
     1501 tttctgggtc agcaagaacc atcaagtgtg catcaaatac ggctgcggcc tcttcaccta
     1561 ggctagctac tgcgttctca cgaataacag aaagctcgtt ttgagatgct tctagagcag
     1621 catccaaacg agcttcctct gcatttgtat cttcaactgt aacagtttcg aaggacaaat
     1681 ctggctgaac gagtagatat gccttagcaa cagcaacacc atctgatgct gcgattcctt
     1741 taagcatttc tgtcatattc ttatgccaat ccttcttttt ccattgtttc agtgatagct
     1801 gcgattgcgt cgtcagcatc agcaccttca gcagagattg ttacgtcagc gccttgacca
     1861 acaccaagac tcataacacc catgatagat ttaaggttaa cagacttttc tttgtagttc
     1921 aaagtgatgt ctgaagcaaa tttactagct gtttgcacaa gcaaagttgc tggacgtgcg
     1981 tggatacctg tttctgccac aatgtggaag tcttttgaag ccatatttgg attctccttt
     2041 atttttacaa aattgtgagt tatttgtgat aacccttaca aaggacatta taccactttt
     2101 tgaaatcatt ttcaagattt ttttaccttt ctttcatgtt tccgtcataa aaagataggt
     2161 tcattttact ttttcttcat taaatagaat ctattagaac ttctgaaaat tgactagtag
     2221 attgatgagc aacgtccaaa attttagcaa aatcaagcgt aacattttta tttataaaag
     2281 cgtcctccaa ggcctgaata attaaagtag ccgcttcttt ccagcctata tattctaaca
     2341 tcatacaagc cgaaagcaag agggaacatg gattagccaa atcctttcct gcaatatcag
     2401 gagcagttcc atgtgtcgct tcaaagatag catgacctgt ctgataatta atattagcac
     2461 ccggtgagat gcctattcct ccgacctgag ccgcaagagc atctgatgca taatctccat
     2521 ttagatttgt aagagcaacc acttggaagt tttccggcgc caataaaatc tgctgcagaa
     2581 agttatccgc aataatgtca tttactacca aagtcccctc tgcaagttct gtagcaaatt
     2641 cttctttcgc caattcataa ccccacttgc ggaaaccgcc ttctgtaaac ttttgaatat
     2701 ttcccttatg aactaaggtc actatcttca attgatgttc tagggcatat tctattgcag
     2761 agcgaatgag gcgtttactc ccttcttccg aaatcggttt gataccaata cttgaagatt
     2821 ctggaaaacg gatatttacc actcccattt cttcttgcag aaaggaaatg actttggcaa
     2881 cctcatctga accagcctcc cattcaatac ctgcataaat atcttctgta ttttcacgaa
     2941 aaatagtaat atccgtcttt tcaggctctt tcagcggact tggcactccc ttaaaatagc
     3001 gaatcgggcg cacacaggca tacaaatcta attcttgacg aagtgcaaca ttaagagaac
     3061 gttgaccttt cccaatcggc gttcccaagg gacctttgat tgcaactaaa tgctcacgga
     3121 ttatttccag tgtctcattc ggcaaagaag ttcccgttaa ttcataagcc ttttctcctg
     3181 ccaaaacctc cctccactga atagaacgtt gacctgcata ggcttttttc actgcagcat
     3241 caataacttt ttgactgact gaccaaatat ccctgccaat accatctcct tcaatatagg
     3301 gaataacggg acaatctggg acaattaacc gtccctctct cattaggatt ttttctgcca
     3361 tatttacctc tttccaatcg ggatgtaaac caaattccta ccacctaagt aggaagagcg
     3421 cggacgaatc aatttattat ttttccgttg ttcctggaca tgtgcaatcc accccgccat
     3481 acggctcatt gcaaaaatca atgtaaaaat atcactatca atacctagca catggtaaac
     3541 tgtcgccgaa taaaaatcta cgtttggaat taaacctttt ttgtttttaa taaagctttc
     3601 tacttcctct gacaatctat aaaacgcttc atcgtctgtt ccgaatgtca aatcacgcgc
     3661 catctccttc aaatactctt ggcgaggatc aaccgtttta tagactcgat ggccaaatcc
     3721 cataattttt tccttcgaat ccagcttctt ctgcaaatat ctctcggcat caccactctc
     3781 gcgaatagcc agcaacatgt caaacactcg ttcatttgca ccaccatgca atgagccttt
     3841 cagagtccca attgccgtgg taacacaaga atataaatcc gttaacgttg atgccgtgac
     3901 acgcgcagca aaagtagatg cattcaattc atgatcagca tgaagcacca aagctttatt
     3961 aaacgctttg atttgtaaat cactcggctc ctcaccattc agcatataaa gaaaattcgc
     4021 cgcaaaaccc agatcagacc gcggttcaat tggaaccaat ccgcgtctca aacgagcaaa
     4081 tgttgcaata atcgtcggaa ccttgcccat aatctgaata gattgttcat acaaagcttc
     4141 taacgaattc tcttcagcat gtacattata tactccaagg agagatactg tcgaacgcaa
     4201 cacgctcata ggatgcaaat gtcgccgtga ttgaatcaga atacattgct ctaccgcatc
     4261 tgaaatcgca tattcttttc gcagactttt ctcaaaataa tttaattcaa tctgagttgg
     4321 caaatgcagg ttccacagaa gatagatgac ttcctcaaaa gaagcgttat tctccatcaa
     4381 ttcagcaatg tcataccctg cataggacaa gcggtcattt tcgattgcac tgattcgcgt
     4441 atcacaggca atcgcatctt ttaacccatt cgtttctgtc atacctttcc tcctagtttc
     4501 tttcttacta ccataggtaa aatacctccg tggcgataat aacgaatatc cgcctctgca
     4561 tcaaaccgca ccagagcttg aaactccttt gtaacatcgt ctatttgcgc atggactgtt
     4621 acaatttgac caacaccgac atcttctggc aagtcgattg tatagctttc atgtccagtc
     4681 aagccaagac tttctgccga ctgaccttct aaaaattgta aaggaagaac acccatcatc
     4741 actaaatttg aacggtgaat ccgctcaaat gactcagcaa gaacagcctt cacaccaagt
     4801 aaacttgaac ctttggctgc ccaatcacgg cttgacccca tcccatagtc tttaccagca
     4861 ataacaatac taccgatacc agcggcctta tatttcatgg ctgcatcata gataggaaga
     4921 atctcatcgc caactcttgt ccaaccacca atttttccag ctgccagctc attctttata
     4981 cgaatatttg caaaagtccc acgcatcatg acttcatgat ttccacgacg acttccataa
     5041 gaattaaaat ccttataaac aatgccattc tcttcgagat aacgagctgc aggactcaat
     5101 cgtgcaatat tccctgccgg ggaaatatga tctgtcgtta cagaatcgcc aaatttagcc
     5161 aaaacagata aattttccag tggttttatg gataaatcta cctgcatgtt gtcaaaatag
     5221 ggcggatttt gaatataggt agaagatgaa ttccaattgt aattcttatc tgtttttgtt
     5281 tcaatcgcgt tccaagcctg actatctgta aatacctgtt ggtattcttc cttataaagg
     5341 tcacgagtca cataacgctc aatgtagtca tctacctcct cacgacttgg cataatgtcc
     5401 gcaaggtaga cagcttgttg cttctcatca taccccagcg gatcccttgt taaatctaca
     5461 ttcatatttc ccacaatagc ataggcaaca acaagcggtg ggctcgctaa gaaattagct
     5521 ttaaccaatg gattaatccg tccttcaaag ttacgatttc cagataatac cgcagaaacc
     5581 aataaatctt cttccttaat cgcctctgct acttcaggac gcagatcacc tgagttaccg
     5641 atacaagttg tacaaccata accaaccaaa ttgaacccta aggcatctag ataggtctgc
     5701 aaacctgatt ttttcaaata gccagtcact acttttgagc ctggtgccaa tgacgtcttg
     5761 accgtcttag aaactgccaa acctttttct accgcatttt ttgccagtaa tcctgccgcc
     5821 aaaaggacat acggattgga ggtatttgta cacgaggtaa tcgccgcaat agcaacatga
     5881 cctgtttgaa tttgctcatc tccttcaaca tacttaaccg tggctgtttt atctaactct
     5941 gcttcctcca aaccaaatcc acgcacacct acttcacgta ttaaactagc ctgaaactct
     6001 gcttttgcat ctgttaattc tatcaaatcc tgtggtcttt taggaccaga aatagatggg
     6061 actactgtcg ataaatccaa ttctaaaacc ttgctataag acggaaaacg ttcagcatca
     6121 tagaataaat aattagcctt ggtataggct tctgtcaact ccacgtgctc ctccgaacgg
     6181 ttggtcaatc tcatataatg taaagtttct ccatcgatcg ggaaatagcc acaagtcgca
     6241 ccgtattctg gagccatatt tgaaacagtt gctcgatccg ctaatgcaag agaagataaa
     6301 cctggtccaa aaaattcgac aaacttccca actacatttt cctgacgtag aagttgagtg
     6361 accttaagcg ccaaatccgt tgcagtggca accttaggca attgcccagc taggcgaaca
     6421 ccaatcacct caggaacggg aaaataagat gcttcaccca acattgcagc ttccgcctca
     6481 ataccaccta caccccaacc aagtacacca ataccgttaa tcatggtcgt atgactgtct
     6541 gtaccaaaca tagaatctgg ataaagcaaa ccatccttgt tgataataac atcgcttaga
     6601 aattcaatgt ttacctgatg gataattcct gtcgctggag gcacagcgcg ataattttca
     6661 aaggaattct ctgcccattt cagaaattca tagcgttcat tatttctttc gaactctaag
     6721 gcaatatttt tctccagagc atcttcagtc ccaaaaaaat caacttgaac agagtggtcg
     6781 atgactaaat ccactggaat ttccgggtta atcaattcag ggtttccacc tgctttcacc
     6841 accgcatcac gcatggaggc taaatctacc acaacaggaa cacctgtaaa atcttgcaaa
     6901 ataacacgac taggtttaaa ggggatttcc cctttaggag atgcagcctg ataatgaagc
     6961 aactccatta tgtgattttt tgtaacatcc acaccatctt cttttcttaa aagactctct
     7021 aataaaatac gaatagtata gggaagtgaa tgaatatcca ctttttcttc cattgatatc
     7081 gaatccaatg cataatatga atattcttcc cctttatgaa tcaagcgttt tctatgtgat
     7141 ttttccatat tttataacct ctttcgacat tattgaatag tatagtacaa aagctaatat
     7201 atattca
//
LOCUS       DASGCC010000101         7143 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.101, whole genome shotgun sequence.
ACCESSION   DASGCC010000101 DASGCC010000000
VERSION     DASGCC010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7143)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7143)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7143
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.101"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            19..1299
                     /gene="aroA"
                     /locus_tag="U1404_001529"
     CDS             19..1299
                     /gene="aroA"
                     /locus_tag="U1404_001529"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEM5348470.1"
                     /translation="MNLRRSVEKLKGTIRVPGDKSISHRSIIFGSLAKGVTRVHDILR
                     GEDVLSTMQVFRDLGVKIEDNGDIVEVHGVGFDGLQAPKNDLDMGNSGTSIRLISGVL
                     AGQDFEATMFGDDSLSKRPMDRVTIPLSQMGVEISGQTERDLPPLTIKGNKNLKPIRY
                     QLPVASAQVKSALIFAALQAEGESVIVEKELTRNHTEDMIVQFGGQLEVNGKEIRIQG
                     GQEFIAQEITVPGDISSAAFWLVAGLIVPGSKIVLENVGINETRTGILDVIKAMGGKM
                     TLSNIDELAKSATITVETSELKATEIAGELIPRLIDELPIITLLATQAHGTTIIRDAE
                     ELKVKETDRIQVVADALNSMGATIEPTEDGMIIHGPTALHGAEINTFGDHRIGMMTAI
                     AALLAKDGEVVLERAEAINTSYPAFFEHLNSLMD"
     gene            1308..1799
                     /locus_tag="U1404_001530"
     CDS             1308..1799
                     /locus_tag="U1404_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM5348471.1"
                     /translation="MPIVLLGFMGVGKTTTAHLLNLPVYDMDHIIEERIGMPIADYFS
                     LEGEASFRQLETEVLKELLDLPSNCIVSTGGGVIKSEVNRELLLANREDNVLFTASFE
                     VSYQRIRKDRQSQRPLFLQCSKEEFEALYRERMALYQGLADTVIDTDKLNPEQVARKI
                     LCK"
     gene            1790..2617
                     /gene="pheA"
                     /locus_tag="U1404_001531"
     CDS             1790..2617
                     /gene="pheA"
                     /locus_tag="U1404_001531"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEM5348472.1"
                     /translation="MQVAYLGPRGSFTHQVAQQAFPSADLQAFETITEVIKAYETGEV
                     TYSVIPVENSIEGSVHETIDYLFHQAEIHAVAEIVQPIAQQLLATSADKAVEVIHSHP
                     QAIAQGKKYIQEHFPQARIEITASTAYAARFVAEHPEQPFAAIAPQAAAVEYGLEVIA
                     QDIQEISENFTRFWILGDKAPSIALEQVAKKVSLALTLPDNLPGALYKAMSVFSWRGI
                     SLTKIESRPLKTALGEYFFILDLDNQSEELLAYSQKELTSLDITYKVLGNYLVYMTS"
     gene            2629..3951
                     /locus_tag="U1404_001532"
     CDS             2629..3951
                     /locus_tag="U1404_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000032347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5348473.1"
                     /translation="MNKNNNILTHHEQLRLDYLQKNIHYLNDKESRELDYLLYKKELR
                     ERHGSPRQSLRSFTPTAYEDDFEEDYFEEDDEQEELLPRYPERKSRKTRQAKPQRFQS
                     PRIEPKVKVPKPKKARKKGGFKRFIGFVLLAIVLVIVAMGYSFFKGMNSVSEKPVAEV
                     FNGVDTSNGTNILILGTDGRVGESSGETRTDTIMVLNVNNTDNKVKLVSFMRDTLVDI
                     EGYEYKLNTAYTLGEQDNQQGAEEVRKALKNNFDIDIKYYAMVDFATFATTIDTLFPE
                     GVTIDAQFSTINGEVVSSVEVPNDLQLEENAPAYQTIQVGVQQMDGKTLLNYARYRSD
                     DEGDFGRTRRQQEVLSAVMTQAKNPMKLFSGSEAIGKVVAMTPTTVPQSFMWLQGPGL
                     LLDAANGIERVTIPENGDWIDDYDMYGGMALRVDFEKYQQRLAELGLR"
     gene            4018..5376
                     /gene="rlmD"
                     /locus_tag="U1404_001533"
     CDS             4018..5376
                     /gene="rlmD"
                     /locus_tag="U1404_001533"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM5348474.1"
                     /translation="MLKKNDIVEVEVVDLTHEGQGVAKIDGFVFFVDNALPGEKISMR
                     ILKLKKNIGFGKVEQWQSFSPDRNQDLDLTYLRTGIADLGHLTYPAQLAFKKKQVENS
                     LRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFY
                     IQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLMLVLVTTRPK
                     IFRVETLIERLTSQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETITDTMLGNEFEI
                     SAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTVGLSFAKQVKHVYGVEV
                     VEKAVLDSQKNAARNGIDNVTYVCDSAESTMQKWVADGVKPTVIFVDPPRKGLTESFI
                     KASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQPTDLFPNTHHVEVVSLLEK
                     RN"
     gene            complement(5451..5712)
                     /locus_tag="U1404_001534"
                     /pseudo
     CDS             complement(5451..5712)
                     /locus_tag="U1404_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
     gene            5938..7050
                     /gene="glf"
                     /locus_tag="U1404_001535"
     CDS             5938..7050
                     /gene="glf"
                     /locus_tag="U1404_001535"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEM5348475.1"
                     /translation="MKKYDYLVVGAGLFGAVFAHEAAKKGKKIKVIEKRDHIAGNIYT
                     REVEGIQVHEYGAHIFHTSEKEIWDYVNQFAEFNRYTNTPVANYKGEIYNLPFNMNTF
                     NKLWGVVTPAEAEAKIAEQRAVLGGKTPENLEEQAISLVGTDIYEKLIKSYTEKQWEK
                     PCTELPAFIIRRLPVRLTYDNNYFNDTYQGIPIGGYTQIVEKMLEHENIDVETNVDFF
                     ANKEEYLANYPKVVFTGMIDEFFDYQLGELEYRSLRFETEVLDMENYQGNAVVNYTDS
                     ETPFTRIIEHKHFEFGTQPKTIITREYSKTWKRGDEPYYPVNNDRNNKLYTAYKRLAE
                     QQENVIFGGRLGHYRYYDMHQVIGGALQCVRNEVGE"
BASE COUNT         2205 a         1274 c         1647 g         2017 t
ORIGIN      
        1 ctagtttgag gtaaggatat gaacttaaga agaagcgtag aaaaactaaa gggaacgatt
       61 cgtgtcccag gagataaatc aattagtcat cgctctatta tttttggttc ccttgcaaaa
      121 ggtgttaccc gtgtccacga tattttacgt ggggaagatg tcttgtcaac catgcaggtc
      181 tttcgtgatt tgggtgtaaa aattgaagac aatggtgata ttgttgaagt acacggtgtt
      241 ggttttgatg gtcttcaagc gccaaaaaat gatttggata tgggaaattc tggaacctcg
      301 attcgtttga tttcaggcgt tttggcaggt caagactttg aggcgactat gtttggtgat
      361 gattccttgt ccaaacgtcc catggaccga gtgactattc cactcagtca aatgggagta
      421 gagatttctg gacaaactga acgtgaccta cctccgttga ccatcaaagg gaataagaat
      481 ttaaaaccaa ttcgctacca actccctgta gcctctgccc aagtaaaatc agctctgatt
      541 tttgctgcct tgcaggctga gggagagtcg gtcatcgtag aaaaagaatt gactcgaaac
      601 catacagaag atatgattgt ccagtttggt ggacagttag aagtcaatgg caaggaaatc
      661 cgcatccaag gtggtcagga gtttattgcc caagagatta cagttccagg agatatttca
      721 agtgctgctt tttggttggt tgctggctta atcgtaccag gttcaaaaat tgtccttgaa
      781 aatgtaggaa tcaatgaaac tcggactggt attctagatg tcattaaagc tatgggcgga
      841 aaaatgaccc tttctaacat agatgaactt gcaaaatcag caaccattac agttgaaacg
      901 tcggaattga aggctacgga gattgcaggc gaattgatac ctcgtttgat tgatgagttg
      961 ccaattatta ccttactagc gactcaagca catggaacaa cgattattcg tgatgctgag
     1021 gagttgaaag ttaaagaaac ggatcgtatt caggttgttg cagatgctct aaatagtatg
     1081 ggagcaacta ttgaaccaac agaagatggt atgattattc acggaccaac tgctttacat
     1141 ggtgctgaaa tcaatacatt tggtgaccac cgtatcggta tgatgactgc cattgccgcc
     1201 ttgttggcca aagatggaga agttgtattg gaaagagcag aagctatcaa cactagctat
     1261 cctgccttct ttgaacactt aaatagtttg atggattagg agaacgtatg ccaatcgttt
     1321 tacttggatt tatgggagtt ggaaaaacaa caacagcaca tttgttaaat ctccccgttt
     1381 acgatatgga ccatatcatt gaagaacgga ttggtatgcc tattgctgac tatttcagtc
     1441 ttgaaggaga ggcttcgttt agacaactgg agacagaggt actgaaagaa ttgctggact
     1501 tacctagtaa ttgtatcgtg tcaactggtg gtggggtgat taaatctgaa gtaaacaggg
     1561 aattgctgtt ggcaaatagg gaggacaatg tactttttac tgcctccttt gaagtttcct
     1621 atcagagaat tcgtaaggat agacaatcgc aaagacctct ctttttacag tgtagtaagg
     1681 aagagtttga agccctctat cgtgaacgaa tggcacttta tcaaggttta gctgatactg
     1741 taatcgatac agataaactg aatccagaac aagtagcaag gaaaatttta tgcaagtagc
     1801 ctatctagga cctcgtggtt cttttacaca tcaagtggcc cagcaggcct ttccgagtgc
     1861 ggatttgcag gcttttgaga cgattacaga ggttatcaag gcctacgaaa cgggagaagt
     1921 tacctattcc gttattccag tagagaactc gattgaaggt agtgttcatg aaacgattga
     1981 ctatctcttt catcaggcgg agattcatgc ggttgcagag attgttcaac cgattgccca
     2041 acaactgtta gccacgagtg ccgataaggc tgtagaggtt atccattctc atccgcaggc
     2101 aattgctcag gggaagaaat atattcagga acattttcct caggctcgta ttgaaataac
     2161 agctagtaca gcctatgctg ctcgctttgt ggcagaacac cctgaacaac cattcgcggc
     2221 aattgctccg caagcggcag cagttgaata tggactggag gtaattgcgc aagacatcca
     2281 ggaaatcagc gagaatttta cacgtttttg gattttgggg gataaggctc cgtctattgc
     2341 cctggaacaa gtagctaaaa aagtcagtct tgcactgaca ttgccagata acctgccagg
     2401 agccttgtat aaggccatgt ctgttttctc atggagagga atcagcttaa caaaaataga
     2461 aagccggccc ctgaaaacgg ctttgggtga gtattttttc atactggatc ttgacaatca
     2521 gtctgaggaa ttattagcct attctcaaaa agaattgact agtttagata taacctataa
     2581 agtactaggg aattacctgg tctatatgac cagctaggat gaagacagat gaataaaaac
     2641 aataatatcc taacccatca tgaacaattg aggttagatt atttgcaaaa aaatatccac
     2701 tacttaaatg acaaagaaag tcgtgagttg gattatctat tatataaaaa agagctgaga
     2761 gaacggcatg gaagtccaag gcaatctcta cgtagcttca caccaacggc ttacgaagat
     2821 gacttcgagg aagattattt tgaagaggat gatgagcaag aggaactgtt gcctcgctat
     2881 cctgaacgta aatccagaaa aacaagacaa gccaaacctc aacggtttca gtctcctcgt
     2941 atcgagccca aagtgaaagt gcctaaacct aaaaaagcac gtaaaaaggg tggtttcaag
     3001 cgctttattg gtttcgtatt gcttgctata gtgctagtga ttgtagcgat gggctatagt
     3061 tttttcaaag gtatgaatag cgtgagtgag aagccagtag ctgaggtctt caacggcgta
     3121 gatacatcga atgggacaaa tattttaatt ttgggaacag acggtcgtgt tggcgaaagc
     3181 tcaggtgaaa ctcgaacgga taccatcatg gttctaaatg tgaataacac ggataacaaa
     3241 gtcaaacttg ttagctttat gcgggatacc ttggtggata ttgagggata tgaatataaa
     3301 ctcaatactg cctatacttt gggagaacag gataatcagc aaggggctga agaagttcgg
     3361 aaggcgttga agaataattt tgacattgat atcaagtact atgcgatggt ggattttgca
     3421 acctttgcga caacgattga tacacttttc cctgagggcg taacgattga tgcacagttt
     3481 tcaactatta atggtgaagt cgttagctca gtagaagtgc cgaatgattt acagctggaa
     3541 gaaaatgctc ctgcttatca aacgattcag gtcggtgtac agcagatgga tggtaagacc
     3601 ttacttaact acgcgcgcta tcgttcggat gatgaaggtg attttggtcg tacgagacgt
     3661 caacaggaag tgctatctgc tgttatgaca caggctaaaa atccaatgaa actattctct
     3721 ggctccgaag ctataggtaa ggttgtggcc atgactccga ccacagtgcc acaaagcttt
     3781 atgtggctac agggaccagg ccttctattg gatgcggcaa atggtatcga acgtgttaca
     3841 atcccagaaa atggagactg gattgacgac tatgatatgt atggtggtat ggctcttcgt
     3901 gttgattttg aaaaatacca gcagcgcttg gctgagttag gcctgcgtta agaaatatgg
     3961 tatactagaa gtgacttcgg tcactttttt agtggtccaa aaatagaaag tagaattatg
     4021 ttaaagaaaa acgatattgt cgaagtagaa gttgtagatt tgacacatga ggggcagggt
     4081 gtggcaaaaa ttgatggttt tgtcttcttt gtagacaatg ctcttccagg cgagaaaatt
     4141 tccatgcgca tcttaaaact taagaaaaat attggttttg gtaaggtgga gcaatggcag
     4201 agcttctcac cagaccgtaa tcaggacttg gatttgacct atctaagaac aggtattgct
     4261 gacttggggc atctcactta tccagcccaa ctagctttta agaaaaaaca agttgagaat
     4321 agtctacgta agattgcagg catttcagaa atagcagtag cagatacttt gggaatggac
     4381 aatcctcttg cttatcgtaa taaggcagct gttccagttc gtcgtgtgaa tgggcagtta
     4441 gaaacaggat ttttccgaaa aaattcacat gatttagttc cgattgagga tttttacatt
     4501 caacataagg aaattgatgc cttggttcta gcgacacgtg acctgttgag aaaattagac
     4561 ttgaagcctt acgatgagaa agaacagaca ggacttgtga gaaatattgt tgttcgtcgt
     4621 ggtcattatt caggtcagtt gatgctagtt ttagttacga ctcgtccgaa gattttccgt
     4681 gttgaaaccc ttattgagcg tttgacaagc caatttccaa atcttgtttc tatcgttcag
     4741 aatattaatg accagaatac caatgctata ttcggtcaag aattccgtct tttgcatggc
     4801 agtgaaacta ttacagatac catgttgggc aatgaatttg aaatttctgc accgtctttc
     4861 tatcaagtca acacagaaat ggctgaaaaa ctctatcaga ccgccattga ctttgcagaa
     4921 ttgtcggcag atgatgtcgt gattgatgcc tattcaggta ttgggacagt tggtctctcc
     4981 tttgcaaaac aagttaagca tgtttacggt gtagaagtcg ttgaaaaggc tgtccttgat
     5041 agtcagaaga atgctgctcg aaatgggatt gataatgtta cctatgtctg tgatagtgca
     5101 gaatccacta tgcaaaaatg ggtggcagat ggagtcaaac cgactgtgat ttttgtcgac
     5161 ccaccacgaa aaggtttgac agaaagtttt atcaaagcaa gtacttctgt aaaaccagag
     5221 aaaatcgtct atatctcctg taatgtggca acgatggcgc gtgatattaa actttatgag
     5281 gaattggggt acaaattgac gaaggtacag ccgacggatt tatttccgaa tacacatcat
     5341 gttgaagttg tgagtctgtt agaaaaacgc aattagattg tccagcttac tctcttgttt
     5401 tctggcaagc tgcttcaaag gtccgcagga cctttgaact ctcaaatacg catcatgttg
     5461 acagttgcca cacctacacc aaaatcaaat gccaacaagc attgagtcgg gtaatagcgt
     5521 aagtagcgca aggtcatgat gagctgctct tccatactta gacggcgtgg atgtcctcct
     5581 tttcggtgtt gctcttgata agcgtcagtg agacaatcaa gcatcagttg aaacgtcgct
     5641 ttttttaaca actatcaaca atttgaaatt ctctgagttt aattttaaga ctttttcgta
     5701 tgttgtttcc atacctttag tataccgcct ttgagttacc gaacaagtct attgataaac
     5761 ttgatgaagg ttgtattgtc tgttataata ttggatattg taagctttaa gtgaaaggtt
     5821 ttagggaaga gattatcaca actcattctt tattagttat gagacgatgg tataaatgat
     5881 agtctagtaa aagatttgga gaaatgactt ccctagaagg ttaaatgtaa aaacaatatg
     5941 aaaaaatacg attatctagt tgttggtgct ggtctgttcg gtgcagtctt tgctcatgag
     6001 gcagctaaaa agggtaaaaa aataaaggtt atcgaaaaac gagaccacat tgcaggtaac
     6061 atctatacaa gagaagtaga aggtattcaa gtccatgaat atggcgcaca tattttccat
     6121 acttctgaaa aagaaatttg ggattatgtg aatcagtttg cggagttcaa ccgatatact
     6181 aacacaccag ttgccaacta caagggtgag atttacaatc ttccattcaa catgaatact
     6241 ttcaataaac tgtggggtgt ggtgacccct gctgaagcag aagcgaagat tgcagagcaa
     6301 cgagctgtat tgggaggaaa aacacctgag aacttggaag agcaagccat ctcacttgtt
     6361 ggtacagata tctatgaaaa attgatcaag tcatacaccg agaaacaatg ggaaaaacca
     6421 tgtacggagt taccagcctt catcatccgt cggttgccag tgcgtttgac ttatgataat
     6481 aactacttta acgatactta tcaaggtatt ccaatcggtg gctacacgca gattgtagaa
     6541 aaaatgttgg aacatgaaaa tatcgatgtg gagacaaatg ttgatttctt tgccaataag
     6601 gaagaatact tggcgaacta tccaaaagtt gtctttacag gaatgattga cgagttcttt
     6661 gattaccaac ttggtgaatt ggagtaccgt agccttcgat ttgagacaga agtattggat
     6721 atggaaaact accaagggaa tgcggttgtc aactacacag atagcgagac accgtttact
     6781 cgaatcatag aacacaaaca tttcgaattt ggtacacaac cgaaaaccat tattacccgt
     6841 gagtattcga agacctggaa acgaggcgat gagccatact atccagtcaa taatgaccgc
     6901 aacaacaaac tctatactgc ttataaacgc ctcgcagaac aacaagagaa tgttattttt
     6961 ggtggacgtc ttggtcatta tcgttactac gatatgcacc aggttatcgg tggggcctta
     7021 cagtgtgtga gaaatgaagt tggggaatga ttttgagaag tcatcaaagt agtaatcgat
     7081 tcttggcaga agttggaatg ctctcaaaat gttaatcaaa aaaaaccaga aagtctggtt
     7141 ttt
//
LOCUS       DASGCC010000102         7099 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.102, whole genome shotgun sequence.
ACCESSION   DASGCC010000102 DASGCC010000000
VERSION     DASGCC010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7099
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.102"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            206..538
                     /locus_tag="U1404_001536"
                     /pseudo
     CDS             206..538
                     /locus_tag="U1404_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(586..2124)
                     /locus_tag="U1404_001537"
     CDS             complement(586..2124)
                     /locus_tag="U1404_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClC family H(+)/Cl(-) exchange transporter"
                     /protein_id="HEM5348476.1"
                     /translation="MENHRKEVSFISQSILYSVLRGSLVGIVAGLVVVAFRLAIEKLF
                     SVFTHLYSLATDNAIYLLLIGGLYLVIALLVGKLIKDEPNAKGSGIPQVEAELKGIMD
                     LNWWSVLWRKFIGGVLSIASGLMLGREGPSIQLGAVTAKGVSVLLKSSEMERRSLIAS
                     GAAAGLAAAFNAPIAGLLFVVEEVYHQFSRLVWVSALAASITANFISLHVFGLMPVLH
                     MPKDLQLLSLDQYWIYILLGVFLGLAGYVYEIVILNIQDFYTLLSKIIPLPVPYYSVF
                     AFLFIIPIGYFFSNLLGGGHHLILELPYLEQGLLTLAILILIRFVWSMISYGSGLPGG
                     IFLPILTLGSLLGLFVARFFLDIGFISQEQMLLFIVLGMAGFFAAISKAPLTAIILVT
                     EMVGSLNQLMVIGLVALSSYVMMDLLGGAPVYEAMLEKILPEEVEQQEHMTLIEIVVN
                     ETLDQIFVSELRLPDSCLITSQIHHGKSRIVKGNSQLSMGDSLLVAVPISQIHTVRRI
                     FEGD"
     gene            complement(2238..3308)
                     /locus_tag="U1404_001538"
     CDS             complement(2238..3308)
                     /locus_tag="U1404_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5348477.1"
                     /translation="MKRLYSFFVGIIAIVLVLWGISYKLEADSTQGTTDKLVIYNWGD
                     YIDPELLAEFTAETGIQVDYQTFDSNESMYTKIKQGGTTYDLTIPSEYMISKMTEENM
                     LIKLDKSKIEGIENIDPRFMGLSFDKNNDYSIPYFWGTLGIVYNETMVENPPQEWEDL
                     WSEEYRDNIMLIDGVREVMGFGLQSLGYSLNSNNPTEIEKAAEHLYNLTPNVKAIVAD
                     EIKGYMIQDAAAIAVSFSGEASEMLDGNENLRYVVPSKGSNLWFDNMVIPKTAKNIDG
                     AYAFMSFMLRPENALRNAEYVGYSTPIPAAKAMLDEETQNDESFYPSEETMKKMEVYD
                     NLGAEMLGMYNDLYLQFKMYRK"
     gene            complement(3308..4078)
                     /locus_tag="U1404_001539"
     CDS             complement(3308..4078)
                     /locus_tag="U1404_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348478.1"
                     /translation="MKKFANIYLTVAFLLLYLPIFYLIFYAFNEGGDMNGFTGFTLEH
                     FSSMLGDSRLMLILAQTFLLAFLSSLIATIIGTFGAIYIYQAKPRFQNALLSVNNILM
                     VAPDVMIGASFLILFTMIGFQLGFVSVLLSHIAFSIPIVVLMVLPRLKEMNADMISAA
                     YDLGATQPQMLKEIMLPYLTPAIIAGYFMAFTYSLDDFAVTFFVTGNGYSNLSVEIYS
                     RARQGISLEINALSTLVFLFSILLVVGYYFISREKEAN"
     gene            complement(4078..4878)
                     /locus_tag="U1404_001540"
     CDS             complement(4078..4878)
                     /locus_tag="U1404_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348479.1"
                     /translation="MKKTSRLFAIPYALWVFLFVLAPVALIIFKSFFDIHGNFTLANY
                     QTYFNSPNMTYLRMSFNSIFYAGIITLVTLLVSYPTAYFLTKLKHRQLWLMLIILPTW
                     VNLLLKAYAFIGIFGQHGSINQFLEFIGLGAQQILFTDFSFIAVAAYIEIPFMILPIF
                     NALDDLDKNLINASRDLGATPWQTFTKVIFPLSMNGVRSGVQAVFIPSLSLFMLTRLI
                     GGNRVITLGTAIEQHFLTTQNWGMGSTIGVVLILAMLLIMWMTKERKK"
     gene            complement(4862..6016)
                     /locus_tag="U1404_001541"
     CDS             complement(4862..6016)
                     /locus_tag="U1404_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348480.1"
                     /translation="MKKPIIEFKNVSKVFEDSGTTVLKDISFELEEGKFYTLLGASGS
                     GKSTILNIIAGLLDASSGDIYLDGQRINDVPTNKRDVHTVFQSYALFPHMTVFENVAF
                     PLKLRKIDKAEIERRVTEALQMVRLSGYENRSIQKLSGGQRQRVAIARAIINQPRVVL
                     LDEPLSALDLKLRTEMQYELRELQQRLGITFVFVTHDQEEALAMSDWIFVMNEGEIVQ
                     SGTPVDIYDEPINHFVATFIGESNILPGRMIEDYLVEFNGKRFEAVDGGMRPNEEVEV
                     VIRPEDLQITLPEEGKLQVKVDTQLFRGVHYEIIAYDDLGNEWMIHSTRKAIVGEVIG
                     LSFEPEDIHIMRLNETEEEFDARIEEYVEVEEVEDGLINAIEEERNEENL"
     gene            complement(6055..6963)
                     /gene="murB"
                     /locus_tag="U1404_001542"
     CDS             complement(6055..6963)
                     /gene="murB"
                     /locus_tag="U1404_001542"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEM5348481.1"
                     /translation="MKDKIRLELEGIDIRFDEPLKEYTYTKVGGAVDYLAFPRNRYEI
                     VRIVEFAKREGIPWQVLGNSSNIIVRDGGIRGFVIRMDKLNSVTVSGYTIEAEAGANL
                     IETTKVALFHSLSGFEFACGIPGSIGGAVYMNAGAYGGEVAHILVSAQILTPAGYVET
                     LDNRELRFGYRSSILQENGAIVLSAKFALKPGNHTVIQQEMARLTHLRELKQPLEYPS
                     CGSVFKRPLGHFAGQLIMDAGLKGYRIGGVEVSEKHAGFMVNIENGTASDYENLIAHV
                     IEVVEKSSGITLEREVRIIGDPADTL"
BASE COUNT         2281 a         1524 c         1328 g         1966 t
ORIGIN      
        1 attatatacc tagtgagggc cttgcggttg gtacattatt gatgtgaatt atgatgacaa
       61 aactgctcca gcctactgat aagatccaca atatacactc aagaatatga ctaaaattca
      121 gtagataggc tctctaactt ataaggaagg aattgtcata gataatcatg tgtagatcaa
      181 gtcgatattg ttgtttgtat tcccctcaac ttgtccaaag cgttacttag ctacatttga
      241 tacaacgact aaaggtctac gtgcttacca cgattttctc agtcaatttc atgtggaagc
      301 tgttggtatg gaaagcaccg gtgtctattg gcgacctgtc tggcatgctc tatgtgagga
      361 cttcgagcta atacttgctc aaccagccca catgaaggcc attacaggtc agaaaactga
      421 caagaaagac gcttactgga ctgccaaatg aatgcggatt ggtctgcttc ctcggagttt
      481 cgttcccgat gaaatcattc ctgaattgag agagttgacc agacaacaga aacattataa
      541 tattgggact tttctcatct ctttgttaag acaatctaaa aaatgctaat ctccctcaaa
      601 tatcctacga acggtatgaa tttgagagat tggaactgca acgagcaagg aatcccccat
      661 agaaagttgg ctatttcctt tcacaatcct tgacttaccg tgatgaattt gactggtgat
      721 caagcatgaa tccggcaaac gtaactcgct aacaaatatt tgatccaatg tttcgttgac
      781 aacaatctct attaaggtca tgtgttcttg ctgttctact tcttctggca gaattttttc
      841 caacattgct tcatagactg gcgcgccacc taagaggtcc atcatcacat aggaactcaa
      901 agctaccaac ccgatgacca tcaattgatt caaacttcca accatttcag ttactaaaat
      961 aatagcagtt agaggtgctt tggaaatcgc tgcgaaaaag cctgccattc ccaatacaat
     1021 aaacaatagc atctgctcct gactgatgaa accaatatca aggaagaacc gtgcgacaaa
     1081 aagcccaagg agacttccta aggttaatat gggcaaaaag atgccccctg gtagaccaga
     1141 accataggaa atcatgctcc atacaaatcg tattaaaatc aagattgcca atgtcagtag
     1201 tccttgttcc aaatatggaa gctctaaaat caaatgatgc ccgccaccca acagattaga
     1261 gaaaaaataa ccaatcggta taataaacaa aaaggcaaat acactgtagt atggaactgg
     1321 gagaggaatg atttttgaga ggagggtata gaaatcttgt atattgagga taacaatttc
     1381 atacacatat ccagcaagtc caaggaaaac tccaagtaag atatagatcc aatattggtc
     1441 aagagatagt aactgtaagt ccttcggcat atgcaaaaca ggcattaatc caaaaacatg
     1501 taaggaaata aagttcgcag tgatactggc tgccagggct gagacccata ccagacgtga
     1561 aaactgatga tagacttcct ccacaacaaa taaaaggcct gctattggtg cattgaaagc
     1621 tgctgccaaa cctgccgcag cgccactagc aatcaaactc cttctttcca tttcactgga
     1681 tttaagaaga actgatacac ctttagccgt tacagctcct aattgaatac tgggaccttc
     1741 acgccccagc attagaccag atgcaatgga taaaacaccg ccgataaatt ttctccaaag
     1801 gactgaccac cagtttaaat ccataattcc ttttagttct gcctccacct gaggtatacc
     1861 agaacctttt gcatttggct cgtctttgat caacttgcca acaagtaaag ctatgaccag
     1921 ataaagccct ccaataagaa gtaaatagat tgcattgtct gttgccagag aatagaggtg
     1981 cgtaaagaca gaaaatagtt tttcaatggc taagcgaaat gcaacgacca ctaaaccagc
     2041 gacaatgcca actaaactac cacgcagaac cgaatagagg attgattgag aaataaaact
     2101 aacttctttc cggtgatttt ccattgggat ttcccttcct ttctatagta tgtatgacca
     2161 aaaaatagga gcaataagta cttagtaaag aacctcactc ccattctttt atttatattg
     2221 ctacctgtcc aatcagacta tttccgatac atcttgaatt ggagatagag gtcattatac
     2281 attccaagca tctctgctcc aagattatca taaacttcca tcttcttcat cgtttcttct
     2341 gaaggataga aggattcgtc gttctgagtc tcctcatcca gcatagcctt ggctgcagga
     2401 attggtgttg agtagccaac atattctgca ttgcgaagcg cattttcagg acgaagcata
     2461 aaactcataa aggcgtaagc tccatcaata ttttttgctg tttttggaat gaccatgtta
     2521 tcaaaccaca ggttagaacc ttttgatggt acaacatagc gcagattttc atttccatct
     2581 aacatttcac tcgcctcacc tgagaacgaa acagcaattg ctgccgcatc ttgtatcata
     2641 taacctttta tctcatcagc aacaattgct ttgacatttg gagttaaatt ataaagatgt
     2701 tcggctgcct tttcaatctc ggtaggattg ttagaattga gactatagcc cagtgattgt
     2761 agaccaaagc ccatgacttc acgcacacca tcaattaaca tgatattgtc acggtattcc
     2821 tctgaccaca agtcttccca ttcctgagga ggattttcta ccatggtttc attgtaaaca
     2881 atgcccaagg ttccccagaa atatggaata gaatagtcat tattcttatc aaagctaagg
     2941 cccataaatc gtggatcgat attttctatc ccttcaatct tagacttatc tagcttgatt
     3001 aacatatttt cttctgtcat cttagaaatc atgtactcag atgggattgt caaatcgtat
     3061 gttgttccac cctgcttaat cttggtgtac atcgattcat tggagtcaaa ggtctgataa
     3121 tctacctgaa tacctgtttc agcagtgaat tctgcgagta attctgggtc aatataatca
     3181 ccccagttat agatgacaag tttatcagtt gtcccttggg ttgaatcagc ttctaactta
     3241 taactaattc cccataaaac taggacaata gctataattc ctacaaaaaa tgaatacaat
     3301 cgtttcatta gttggcctcc ttttcacgtg agatgaaata ataacccact accaataaga
     3361 tagagaaaag gaaaacaagg gttgataggg cattgatttc caaagaaatc ccttgacgag
     3421 cccgtgagta aatctctaca gataggtttg agtaaccatt tcccgtaaca aagaatgtca
     3481 cggcaaagtc atccaaggaa taggtaaagg ccatgaagta gcctgcaatg atggctggtg
     3541 ttaggtatgg caacatgatt tctttcagca tttgtggctg agttgccccc aaatcataag
     3601 ctgctgaaat catatcggca ttcatttcct tcaagcgtgg caaaaccatc aatactacga
     3661 ttggaataga aaaagcaata tgactgagca atactgagac aaagccaagc tggaaaccaa
     3721 tcatggtaaa gagaattagg aaactcgccc caatcatgac gtctggagct accatcaaga
     3781 tattattgac agacaagagt gcattttgaa aacgaggttt tgcctgatat atatagatgg
     3841 caccgaaagt tccgataatg gtcgcaatca aagaactcaa gaaggccaac aagaaggttt
     3901 gagccagaat cagcattagt cggctatcgc caagcataga tgaaaaatgc tctaaggtaa
     3961 agcctgtaaa gccattcata tctccgcctt cattaaaggc ataaaaaata agatagaaaa
     4021 tcggtaagta gagaaggaga aaggcaactg ttaagtagat atttgcaaat ttcttcatta
     4081 tttcttcctc tctttcgtca tccacataat caagagcatg gccaaaatca agaccacacc
     4141 tatggttgaa cccattcccc agttttgtgt tgtgagaaag tgttgttcta tagctgtacc
     4201 aagcgtgatc actcggttac cgccaatcaa acgggtcaac atgaagaggc tcagacttgg
     4261 aatgaaaacc gcctgtacac cagaacggac accattcata gaaagaggaa aaataacttt
     4321 tgtgaaggtc tgccaaggag ttgcccccaa atcacgactg gcattgatta ggtttttatc
     4381 caaatcatcc aaggcgttaa agatcggcaa aatcataaac ggaatctcga tataggctgc
     4441 aacagcaata aatgagaaat ccgtgaaaag aatttgctga gctcctagac caataaattc
     4501 taggaactgg ttgatagagc cgtgttgtcc aaaaataccg ataaaggcat aggctttcag
     4561 taaaagattg acccaggttg gcaagataat caacatgagc cagagctgtc tatgcttgag
     4621 tttggtcaag aaataggctg ttgggtagga aaccaaaagc gtgaccagag taataatacc
     4681 tgcgtaaaaa atggagttaa aactcattcg cagataggtc atattgggcg agttaaaata
     4741 ggtctggtaa ttggccaaag tgaaattgcc atgaatatca aagaaagatt tgaagataat
     4801 caaggcaact ggagcgagta caaagagaaa gacccatagg gcatagggaa ttgcaaaaag
     4861 cctagaggtt ttcttcattg cgttcctcct caatggcatt aatcaagcca tcttctactt
     4921 cttccacttc cacatattct tcgatacggg catcgaattc ttcctctgtt tcattgagac
     4981 gcatgatatg aatatcttct ggctcaaaac ttagtccaat cacttctccg acaatagcct
     5041 tacgagttga gtgaatcatc cactcattac cgaggtcgtc ataggcgatg atttcatagt
     5101 gaaccccacg gaagagttga gtatccactt ttacctgcaa tttgccttcc tcaggtaggg
     5161 taatctgcaa atcttctgga cggataacaa cttcaacttc ttcattagga cgcataccgc
     5221 catcgacagc ttcaaagcgt ttgccgttaa actcaaccag atagtcttct atcatacgac
     5281 ctggaaggat attggattca ccgatgaagg tagcaacaaa atggttgatt ggctcgtcgt
     5341 aaatgtccac tggcgtgcca gactgaacaa tttcaccttc attcatgaca aaaatccagt
     5401 cactcatggc cagagcttct tcttggtcat gggtaacgaa gacgaaggta attcctagac
     5461 gttgttgcaa ttcacgcagt tcgtactgca tttctgttct tagtttcaag tccagggcag
     5521 aaagtggttc atctagcaag acaacgcgag gctggttgat aatcgcacgt gcaatagcaa
     5581 cccgctggcg ttgaccacca gacaatttct gaatggaacg attttcataa ccagaaagtc
     5641 ggaccatttg taaggcttct gtcacacggc gttcaatttc agccttgtca atctttcgta
     5701 atttaagagg aaaagccaca ttttcaaaga cagtcatatg tgggaaaagg gcataggact
     5761 ggaaaacagt atggacatcc cgtttattgg tcggaacatc attaatccgt tgaccgtcca
     5821 gataaatatc acctgaactc gcatccaata aaccagcaat aatgttcaaa attgttgatt
     5881 tccctgaacc agaagctcct aaaagggtat aaaatttccc ctcttccaat tcaaaactaa
     5941 tatcctttaa tacagttgtt ccactgtctt caaatacttt tgaaacgttc ttaaattcaa
     6001 taattggctt tttcaattct cataaattcc ttcttttttg taagagcctg atggctagag
     6061 tgtatcagca ggatcgccga taatacgaac ctctctctcc agagtaattc ctgaagattt
     6121 ttcaacaact tcaattacat gggcaatcaa attttcgtaa tcagatgctg taccattttc
     6181 tatattgacc ataaagccag cgtgtttttc agaaacttcg actccaccaa ttcgataacc
     6241 ttttaaaccc gcatccataa tcaactgtcc tgcgaagtga ccaagtggac gcttgaagac
     6301 tgaaccacaa gatggatatt ccaaaggttg cttgagctcg cgtaaatgtg tcaaacgagc
     6361 catttcttgt tgaataaccg tatgatttcc tggcttgagg gcaaattttg cagacaaaac
     6421 aatcgcaccg ttttcctgca aaatagaaga acggtagcca aatcgtaact cacgattgtc
     6481 caatgtttcg acataacctg ctggagtcaa aatctgcgct gaaactagaa tgtgtgccac
     6541 ttcacctccg taagcacctg cattcatgta gacagcacca ccaatgcttc ccggaatacc
     6601 acaagcaaat tcaaatcctg ataaagaatg gaaaagtgcg acttttgttg tttcaatcag
     6661 attggcacct gcttctgctt caatggtgta tcctgataca gtaacggagt taagtttatc
     6721 catacggata acaaaaccac gaataccgcc atctcggaca atgatattac ttgaatttcc
     6781 taatacttgc catggaatac cttcgcgttt agcaaattct actatacgaa caatctcgta
     6841 acgattccgc ggaaaagcta gataatcaac agctcctcct acttttgtat aggtatattc
     6901 ttttaaaggc tcatcgaatc gaatatcgat gccttctaat tcaagcctaa ttttatcttt
     6961 cataaccttc tcatttcaat ttaagatata caggatttat tataccaaaa attacaggag
     7021 aaaacgaata aaattcaaca aaaatacttt cacaaaccaa attaatttgc cccaatattt
     7081 tgaattggag aatggaatg
//
LOCUS       DASGCC010000103         6939 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.103, whole genome shotgun sequence.
ACCESSION   DASGCC010000103 DASGCC010000000
VERSION     DASGCC010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6939
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.103"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(62..655)
                     /locus_tag="U1404_001543"
     CDS             complement(62..655)
                     /locus_tag="U1404_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5348482.1"
                     /translation="MTQIKWRDCLLICFGAILYALVLNMLIIPHEFGEGGITGVTLLL
                     FYTTGIETSLSSFVLNGILIVLAYRFLSKLTVFYTFLAVATMSLTMHYTTFLQIKWLP
                     LIPSALLAGLVTGLSMALVIYGNGSTAGSDIIALLCNKYFKWKISTVILIFDVFVVTP
                     LAFKIGLVKTFWTLVMVVIISKSLDWFLQALKKNNHK"
     gene            complement(733..1116)
                     /locus_tag="U1404_001544"
     CDS             complement(733..1116)
                     /locus_tag="U1404_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM5348483.1"
                     /translation="MGLFSGLLGNASQMDNDKIEQELEHVLLDNEQVEMAFSLVRDLI
                     VFTEYRLILVDKQGMTGKKVSYKSIPYRSISRFTVETSGHFDLDAELKIWISSAVEPA
                     EILQFKSDKSVIAIQKALASAVLGK"
     gene            complement(1204..3780)
                     /locus_tag="U1404_001545"
     CDS             complement(1204..3780)
                     /locus_tag="U1404_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5348484.1"
                     /translation="MKKKTTLFALTGIILSCHLFLAGCQKTENTAINHQDVQSSNISK
                     VDENTIVVSEIKSNGYMRLYGEESYFFEGPIPYAAHFLKDTLPDSDYKLNKEDIQYQL
                     EKGYIIKVNEQYFYYPKDKDANVISISEAKKLTKNQKKPTSQAKKGVAGVDYPTDDGF
                     LFENEGQILSKTDEGLVLEHNGHSHFIFYKDLKESKWSYLVPKEYIENSQSSSHSNAK
                     QAKLSQTFDDGYVFDPKDIVAEDANGYTVRHGDHYHYIWKSSLQYGQGNTGETIGKKG
                     QITVLDNHSLHTPTTRNNFVPLKSTTEKGHTSTQSNSKKAFPGIDYPTSDGFIFDGSG
                     VQGQTALGLLIGHGTHTHLLPYSHLIGSPWESYIPTQYLETARAEYHSSTSTQVDVEI
                     PLSPQEGVKPNSSVEEEREAKKSYLAENMHVSKEKIKVIETDAGPAFVYPHGDHSHTI
                     LIEKVEVGKPIEDPHGDPHAHDKIGMATLKQLGFDDEIIEDILHATADTPFPSNETDS
                     EKMREWLKTVKYLNIGQRKDPLKRAGLDLMPNVEVLGIGFTPIDDVKPILQFKKLKQL
                     WMTSTGVKDYQFLKEIPTLEGIDLSQNGVSDLGFLEEFPNLKVVSAAGNDIEDITILA
                     KLKALESLNLDHNKVTDLSPLADLSQLTAVSLDNNRITDLSALQNKKKLTRLYISQNP
                     QLDISTLKTENLEELTANESNVKDLQFVKNNPNLTSLTLKNNKITELQGIEENEKLVN
                     LDVEGNQIKTLEIEGKQESVVRLNVADNQLKNLEGINDYKALEDLNASKNDIETLAIT
                     EPNKTLKTIDVSENHIPKEELNLNDQKIPSAIAEHFPAVEGGSIENNQPKEVDKEAKV
                     GE"
     gene            4165..4917
                     /locus_tag="U1404_001546"
     CDS             4165..4917
                     /locus_tag="U1404_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348485.1"
                     /translation="MENTSTQTFEELVAEQKKKRNRVLRIIITLFTTIIVFFACLALF
                     KYNSGNISGTWRNSQAEQDIVETSIKELQNQLPGIDKTWIDATYTMTVVDKKAVFTAT
                     TSFDIPKIAKLTLDQAYKVMLEEAQKEASSLGISVEEYLTTALGADYEKQLKSFLPTQ
                     AEAEKEFHKYQDEYAKELGATYNQETGTISATFFEGEVDQLFHTVTITKINDAAIKQL
                     TTYDISVKDIISYSRKGNTTIINGNEEFTLEK"
     gene            complement(5436..5966)
                     /locus_tag="U1404_001547"
     CDS             complement(5436..5966)
                     /locus_tag="U1404_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5348486.1"
                     /translation="MKQNQLRQLTEISLFAALICVVVFFIRIPFGSQFVHLGNALVVV
                     GVLIFGAKKGALAASLGLGIFDLLSGYASVAWITILESLIVCFVLHLFYEKFLQANDS
                     LSNIILVGIVAALTKIILNLLKYTLTGSLVGGLTPSASFLAALGRILGTYGTAITTII
                     AVPILYQVCKRLYKRK"
     gene            complement(5963..6811)
                     /locus_tag="U1404_001548"
     CDS             complement(5963..6811)
                     /locus_tag="U1404_001548"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine kinase"
                     /protein_id="HEM5348487.1"
                     /translation="MVQRLLLANDLPGVGKVALATSIPIAAACQVETMLLPTVLLSSH
                     TGGFPDVVIEDMTDLNRAYFRQWKNLNLELAGILSGYCRNPQQLSQLAMYAKQTETPL
                     IVDSVMGDGGKLYTGFTPTYVEAMKELIQSAKLILPNVTEAAFLTGRDYLGACYDRVA
                     IEDLLEALAEQVSADIVLTGISFDDRQIGVAYFQQETREITTYMSKKYPANFFGTGDI
                     LSTLLAVASIQQINLHQAIPLALDFIDKSLERTLALDRDLKFGISFEPFLAELQQAFQ
                     TLKEKL"
BASE COUNT         2233 a         1395 c         1144 g         2167 t
ORIGIN      
        1 attcgactat aagaaaagag aaaactagtt atacatgcac aactgggttt ctcttgtatt
       61 tttatttatg attattcttt ttcaatgctt gcaagaacca gtccaaactt ttactgataa
      121 tgacaaccat taccaatgtc caaaatgttt ttacaagccc aattttaaaa gccaaaggag
      181 ttaccacaaa tacatcaaaa atgagaataa cggtggaaat cttccatttg aaatatttat
      241 tacacaacaa tgcaataata tcacttcctg ccgtggaccc gtttccataa atgactagag
      301 ccattgataa acctgtcacc aatcccgcca aaagagcaga aggaatcagg ggcaaccatt
      361 ttatttgcag aaaagtcgta taatgcatgg ttaaggacat agtagcaacc gctaagaaag
      421 tatagaaaac cgttaactta ctcaaaaagc gataggctaa tacaatcaaa atcccattca
      481 aaacaaaact ggacagactt gtttcaatcc ctgtcgtata aaacaaaagt agggtaacac
      541 cagtaatccc accttcgcca aattcatgtg gaatgatgag catattcaaa acaagggcat
      601 ataggattgc cccaaaacat atcaataagc agtctctcca ttttatctgc gtcatattct
      661 ctcctcacaa acagtccacc ttagtatatc aaaaaaagca gaaagcggat agccactttc
      721 tgtacttttt tcctattttc ctaagacagc tgaagccagt gctttttgaa tggcaatgac
      781 actcttatcg ctcttaaact gaagaatttc agcaggttca acagccgatg aaatccatat
      841 tttcagctca gcatctaagt caaaatgacc agaggtttct accgtaaaac gtgaaatcga
      901 gcggtaagga atcgatttat aagatacctt tttcccagtc attccttgct tatcgaccaa
      961 aatcaatcga tattctgtaa aaacaatcag atcacgaacc agactaaatg ccatctcaac
     1021 ctgttcatta tccagtagaa catgctccaa ttcctgttca atcttatcat tatccatttg
     1081 cgaggcatta cctagtaaac ctgaaaatag tcccataata tgactccttt ggtatttttc
     1141 tatagtataa cacaaaaagc tactagttga ctatcttagg taggtcttta ccaaacatga
     1201 gaattactcg cctacctttg cttccttatc aacttcttta ggttgattgt tctcgatact
     1261 gccaccttca actgctggaa aatgttctgc aatcgcagat gggatcttct gatcatttag
     1321 atttaattct tccttcggaa tgtgattttc actcacatca attgttttca aagtcttatt
     1381 tggctccgtg atggcaagtg tttcaatatc attttttgaa gcattcaggt cttctaaggc
     1441 tttgtaatca ttgattcctt ctaaattctt caattgatta tctgcaacat ttaatcgaac
     1501 aaccgattct tgtttaccct ctatttccaa agtcttaatt tgattcccct ctacatccag
     1561 atttactaat ttttcatttt cttctatccc ttgtaattca gtaatcttat tattcttaag
     1621 agtaagacta gttaaatttg gattgttttt tacaaactga agatctttta cattactttc
     1681 attagctgtc agttcttcta aattctctgt ttttagagtt gatatatcca attgaggatt
     1741 ctgtgatata tacaaacggg ttaacttctt cttgttttga agcgcagata aatctgtgat
     1801 acgattatta tctaaactaa cagctgtcaa ttgtgacaaa tctgctaatg gggataaatc
     1861 cgtcacttta ttatgatcta aatttaagga ttccaaagct tttaatttag ctagaatagt
     1921 gatatcttca atgtcatttc ctgcagcaga aactactttt aagtttggaa attcttccaa
     1981 aaagcccaaa tcagaaacac cattttgtga taagtcaatt ccctctaatg ttggaatttc
     2041 tttcaaaaac tgataatcct taacgcctgt gctagtcatc cataattgtt tcaatttttt
     2101 aaattgcaag ataggtttta catcatcaat tggcgtaaaa ccaatcccta acacttcaac
     2161 atttggcatc aagtccagac cggctctctt tagcggatct tttcgctgac caatatttag
     2221 atattttacc gtttttaacc actctctcat cttctcggaa tctgtttcat tagatgggaa
     2281 aggagtatcg gccgtagcat gcaaaatatc ttcaataatc tcatcatcaa aacctaattg
     2341 ttttaaagta gccattccaa ttttatcatg agcatgtggg tcaccgtgag ggtcttcgat
     2401 tggttttcca acttcaactt tctcaatcaa gattgtatga gaatggtcac catgagggta
     2461 aacgaaagca ggtcctgcat ctgtttctat caccttgatt ttttcttttg aaacatgcat
     2521 gttttcggct aggtagctct ttttagcttc tcgttcttct tctacacttg agttaggttt
     2581 cacaccttct tgtggtgaca acggaatttc tacatcaact tgagtggaag ttgacgaatg
     2641 atattctgct ctagcagtct ctaaatactg agtaggaata taagactccc acggacttcc
     2701 tatcaaatga ctgtacggaa gtaaatgagt atgcgtacca tggccaatga gtaaccctaa
     2761 cgctgtttga ccttgaactc cactaccatc aaaaatgaaa ccgtcgcttg ttggataatc
     2821 aatacctggg aaagcttttt ttgaattaga ctgagtggaa gtatgccctt tttctgtggt
     2881 agacttgagt gggacgaaat tatttcttgt ggtcggagta tgcaacgaat gattatcaag
     2941 aacagtaatc tgtccctttt ttccaatggt ctccccagta tttccttgtc cgtattgcaa
     3001 acttgatttc caaatataat gataatgatc tccatgacgt accgtatagc cattcgcatc
     3061 ttcagccact atatccttcg gatcaaatac ataaccatca tcaaaagttt gtgatagctt
     3121 cgcttgcttt gcgttggaat gcgagctgga ttggctattc tcaatgtact ctttgggtac
     3181 cagataggac catttgcttt cttttaaatc cttatagaaa ataaaatgtg aatgaccatt
     3241 atgttctaag accagtccct catccgtttt tgaaagaatt tgaccttcat tttcaaaaag
     3301 aaatccatca tccgtaggat aatcaacacc agctacccct tttttagctt gagaagtagg
     3361 tttcttttga tttttggtga gtttcttagc ttcagaaata gaaattacat tagcatcttt
     3421 atccttggga tagtagaagt actgctcatt tacttttata atataacctt tctctagctg
     3481 atactgaata tcttctttat tcaatttata atcagaatct ggaagggtat cttttaaaaa
     3541 gtgtgccgca tacgggatcg gaccttcaaa aaagtatgac tcttctccat atagacgcat
     3601 atagccatta gatttaattt cagacactac aatcgtattt tcatctactt ttgagatatt
     3661 gctactttga acatcttgat gatttattgc agtattctct gttttttggc aacccgccaa
     3721 aaaaagatga caagatagga taatgcctgt caaggcaaat aaggttgttt tctttttcat
     3781 ttttgtcctc ctaaactcat taaccagtta acaattaact agtatacatt ttatttttga
     3841 tttttgcaag aaaaaacaac tgacaatgat tgttcgtgaa taaattttcc attccacgac
     3901 aaacgcatga aaaatttgtt ttataaacca tattttcacg actgctgtca gtttttagta
     3961 gaaaaaatgt aatataatag ccttggaaat gggggtatcc ttgttaaagt gcaagtttta
     4021 caaaaacctt taaaaaaatg catacaacaa gaaaatagtt acataccttt ttcttcatgc
     4081 ggattgcatg tttccatccc tacgatcatt gacaaagcaa acaaactata gtatattaaa
     4141 aatagggaaa taaaaggaga atatatggaa aatacatcta ctcaaacttt cgaagaactc
     4201 gttgcggaac agaaaaagaa acgtaatcgc gtccttagaa ttattatcac actctttacc
     4261 actattatcg tattttttgc ctgtcttgca ttattcaaat acaacagtgg caacattagc
     4321 ggtacgtggc gtaattccca agctgaacaa gatattgtcg aaaccagtat caaggaattg
     4381 caaaatcaac ttccaggtat cgataaaacg tggattgatg caacttatac gatgacagtc
     4441 gtagataaga aagctgtctt taccgctaca acaagctttg atattcctaa aatcgcaaaa
     4501 ttaaccttgg atcaagccta taaggtgatg ttagaggaag cacaaaaaga agcaagttct
     4561 ctgggaattt ccgtagaaga atacttaaca accgctctcg gagcagacta tgaaaagcaa
     4621 ttgaaatcat ttctacctac acaagctgag gcggaaaaag aatttcataa gtaccaagac
     4681 gaatatgcta aagaactagg tgccacatac aatcaagaaa ctggtactat ctctgctacc
     4741 tttttcgagg gagaagtcga tcagctcttc cataccgtga ccattacaaa aattaatgac
     4801 gcagcaatca aacagctgac tacatacgat atttccgtaa aagatattat ttcctattct
     4861 cgcaagggaa ataccaccat tattaacgga aatgaagaat ttactttaga aaaataataa
     4921 aaaaagctgg gaaagtcatc cctgatggtt ccgacctcac ccacagaata atgaaaataa
     4981 atatgaagcc ctcactagat gtataatctt agtgagggct ttgtgcttga cgagttaatg
     5041 atgttagtca tcgccagaaa aactaaccca ctctattgat tagctctaaa aaatatgcaa
     5101 tagacatgag tataagaact agccaataaa aacacagata gattcaagct gattttgatg
     5161 aaatacagcc gaattgtctg tgcttttatt tttgtctcta ctatagatag gacaacattg
     5221 cggcgatatt tgaaagaact tgtaccaata ctcaatgaaa atcaaaagta gcctaggaaa
     5281 cgaagccgaa ggtagaactg gagttatcaa ggcaagttga caacggataa ttttgatttt
     5341 cgaagagtat aatctcctgt ttgtttcgcc acttacagtg tagtccttct gacctttttt
     5401 tgcatattga atttaactaa tgtcactaat ataaattact ttctcttata taacctttta
     5461 catacctgat aaagaatagg tacagcaatg atggtcgtaa ttgcagtgcc ataggttcct
     5521 aaaatcctac ccaaagcagc taaaaatgat gccgatggcg ttagtccacc gactaaacta
     5581 cccgtcaatg tgtacttcaa caggttcaag ataatttttg tgagggctgc aactatccca
     5641 accaagataa tatttgatag actatcgttt gcctgtagga atttctcata aaataagtgt
     5701 aggacaaaac agacaatgag tgattctaga atggtaatcc aagcaacgga ggcatatccc
     5761 gacagtaaat caaagatgcc tagaccgagt gaagctgcca gcgccccttt tttggcacca
     5821 aagatcaata ctcctactac caccagagca ttgcctaaat ggacaaattg actcccaaaa
     5881 ggaatgcgaa taaagaagac aaccacacaa ataagggctg caaataggct aatttctgtt
     5941 aattgacgca attgattctg tttcataatt tctcctttaa tgtttgaaat gcctgctgta
     6001 attctgctag aaaaggttca aaggaaatcc caaatttcaa gtctctatcc aaagcaaggg
     6061 tacgctctaa actcttatcg ataaaatcta aagctagagg gatagcttga tggagattga
     6121 tttgttggat ggatgctaca gccaacaagg tagatagaat gtcacctgtt ccaaagaaat
     6181 ttgctggata ttttttagac atataggtag ttatttccct tgtttcctgc tgaaaatagg
     6241 ctacacctat ttgtctatca tcaaaggaaa tccctgtcag tacaatatct gcggatacct
     6301 gctctgctaa agcttccagt aagtcctcaa tagccaccct atcgtagcaa gctcccaaat
     6361 aatccctccc tgtcaaaaaa gctgcctctg ttacattggg gagaatgagc tttgccgact
     6421 gtatcaactc tttcatggct tctacatagg taggggtgaa acctgtatac aacttccctc
     6481 catcccccat gaccgaatca acaatcaatg gtgtctctgt ttgtttagca tacatagcca
     6541 attgacttag ttgctgagga tttctacagt agccagacaa gatgcctgcc aactccaaat
     6601 tcaagttctt ccactgtcta aaataggctc gattcaagtc agtcatatct tcaatgacaa
     6661 catctgggaa acctcctgtg tgtgaggata aaagaactgt aggtaaaagc attgtttcta
     6721 cctgacaagc agccgcaatt gggatactag ttgctagtgc aaccttacca acaccaggta
     6781 agtcgttcgc aagcaataat cgctgaacca taacaacctc ctaaattatt tttcttaaac
     6841 aaaattgtaa aggattatca tacatttttc aatcttacat atccacaact gtatggggac
     6901 agacagctga aaccttacaa caccaggctc aaattatta
//
LOCUS       DASGCC010000104         6795 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.104, whole genome shotgun sequence.
ACCESSION   DASGCC010000104 DASGCC010000000
VERSION     DASGCC010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6795
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.104"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(46..669)
                     /gene="nth"
                     /locus_tag="U1404_001549"
     CDS             complement(46..669)
                     /gene="nth"
                     /locus_tag="U1404_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEM5348488.1"
                     /translation="MVLSKKRARKVIEEIIALYPDAKPSLDFRNHFELVCAVLLSAQT
                     TDAAVNKATPGLFEAFPTPQAMAAAQVKDIEPYISRLGLYRNKAKFLKECAQQLLDRH
                     DGIVPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICKHHDIVKKSATPL
                     ETEKRVMEVLPPELWLPAHQAMIYFGREVCHPKNPECEKFPQLYEFD"
     gene            767..1618
                     /locus_tag="U1404_001550"
     CDS             767..1618
                     /locus_tag="U1404_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEM5348489.1"
                     /translation="MDLQELCRKVIQARPRNSHKGSYGRVLLIGGLYPYGGAIIMAAL
                     ATVNSGAGLVTVATEKDNIPALHSHLPEAMAFSFDDQALLISSLENADLVLIGPGFGE
                     NSRAEQLLDFVFEHLSDQQILVLDGSALTLVAKQNRKNFPCKQVILTPHQKEWERLSS
                     IPIADQTSQRNLEALQSFQENTILVAKSSATQILKTQPNQVTPIGAGGPYQATGGMGD
                     TLAGMIAGFAVQFPHVQLYERILVATYLHSYIADQLAQDYYLVKPTDVSRNIQKTMLQ
                     FQTQTTA"
     gene            complement(1800..6545)
                     /locus_tag="U1404_001551"
     CDS             complement(1800..6545)
                     /locus_tag="U1404_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM5348490.1"
                     /translation="MKKKETFSLRKYKIGTVSVLLGAVFLFAGAPSVAADELTSLVET
                     KVEATVPDVIVSESASESPVVEELVDTSVEATPTDVTTTDNVEETLGSEALENITNTE
                     VEATQPAVETPAISEKKVEEDEKLAVADETTAITNQEEAKPQNIDSNTIITVPKVWDS
                     GYKGEGTVVAIIDSGLDVDHDVLHISDLSTAKYKSEKEIEAAGITYGEWFNDKVVFGY
                     NYVDVNTVLKEEDKRSHGMHVTSIATGNPTQPVAEQLMYGVAPEAQVMFMRVFSDLKA
                     TTGAALYVKAIEDAVKLGADSINLSLGGANGSVVNMNENVTAAIEAARRAGVSVVIAA
                     GNDGTFGSGHSNPSADYPDYGLVGTPSTARDAISVASYNNTTVGSKVINIIGLENNAD
                     LNYGKSSFDNPEKSSVPFEIGKEYEYVYAGIGQASDFDGLNLTGKLALIKRGTISFSE
                     KIANATAAGAVGVVIFNSRPGEANVSMQLDDTAIAIPSIFIPLEFGEALAAKPYKIAF
                     NNETDIRPNPKAGLLSDFSSWGLSADGELKPDLAAPGGAIYAAINDNDYANMQGTSMA
                     SPHVAGAAVLVKQYLQATYPTKSPQEIEALVKHLLMSTAKAHVNKETTAYTSSRQQGA
                     GIIDTAAAISTGLYLTGEDGYGSITLGNVEDTFSFTVKLHNITNEDKTLNYSTQLTTD
                     TVQNGLITLAPRLLAEIPGGKVTVKANSSTTVTINVDASSFAEELTGLMKNGYYLEGF
                     VRFTDVADGGDIVSIPYVGFRGEFQNLAVLEEPIYNLIADGKGGFYFEPVTAQPDTVD
                     ISHHYTGLVTGSTELIYSTDKRSDFAIKTLGTFKNEAGYFVLELDESGKPHLAISPNG
                     DDNQDSLAFKGVFLRNYTDLVASVYAADDTERTNPLWESQPQSGNKNFYSGDPKNPKS
                     SIIYPTEWNGTDSEGNALADGKYQYVLTYSSEVPGAAVQTMIFDVIIDRESPVITTAT
                     YDETNFTFNPRPAIEKGESGLYREQVFYLVADASGMTTIPSLLENGDVTVSDNKVFVA
                     QNDDGSFTLPLDLADISKFYYTVEDYAGNISYEKVENLISIGNEKGLVTVNILDKDTN
                     SPVPILFSYSVTDETGKIVAELPRYAGDTSVLKLPFGTYTFDLFLYDTEWSSLAGETK
                     AVVTISEENSTAEVNFYVTLKDKANLLVDIDALLPSGSTIQLVTADGQTIQLPNAKYS
                     KTDYGKFVPVGTYTILPTLPEGYEFLEELDVAVLANQSNVKKLTLINKVALKELIAEL
                     AGLEETARYYNASPELQTAYDKALEDANAVYANKHNQAQVDSAVASLVAAREQLNGQA
                     TDTEKLIAEVSNYTPTQANFIYYNAENTKQIAYDTAVRSAQLVLNQENVTQAVVNQAL
                     ADLLAAKANLDGQKTDISALRSAVSVSSVLKATDAKYLNASENVKQAYDQAVEAAKAI
                     LADESASQASVDQALAVLTSAQAELDGVATSTNDAKEPANTATDKKDEGTVTPPPIDS
                     EKVDVQAPPVKDTGNSGHVPIGQKPNPQPTLPRPVTLQASLSSPNQEKQVTQLPNTGD
                     NDTRYYLVLGVIIGLGTLLVSKRRHKEEV"
BASE COUNT         1908 a         1444 c         1358 g         2085 t
ORIGIN      
        1 aattttacat aaaaactaaa aaaatcttca aaaacagaag attttttagt caaattcata
       61 taattgtggg aatttttcgc attcagggtt cttaggatgg caaacctcac gaccaaaata
      121 aatcatagct tgatgagcag ggagccagag ttcaggaggt aagacttcca tgactcgttt
      181 ttctgtttcc aggggtgtag ccgatttttt gacaatatcg tggtgtttac aaatccgtcc
      241 cacgtgggta tcaactgcga aggcgggaat tccgaaaccg acacttaaaa caacattggc
      301 cgtttttctt cccactcctg ccaaggcttc taattcctca cgagtctgtg ggactatgcc
      361 atcatgtcgg tccaacaact gttgggcaca ttcttttaaa aactttgctt tattacgata
      421 taagcccaag cgagatatat agggctcgat gtccttcact tgtgctgctg ccatggcttg
      481 aggcgttggg aaagcctcga acaaacctgg ggttgcctta ttaacggcag catccgttgt
      541 ctgagctgac aaaagtactg cgcagaccaa ttcaaaatgg ttgcggaaat ccagactagg
      601 cttagcatca ggatagaggg cgatgatttc ttcaataact tttcttgcac gtttttttga
      661 taataccatg aattcattat agcatgaaaa cttggattta tctaaaatct ggattgtcat
      721 aaacctcatt cctcgtggta taataagaag aaaaggggga atatgtatgg acttacaaga
      781 actctgtaga aaggtcattc aagcaaggcc acgcaacagc cataagggaa gctatggtcg
      841 agtcttgctg attggtggac tgtatcccta tggtggagcg attatcatgg ccgcactagc
      901 aaccgtcaac agtggagcag gcttggtgac tgttgctact gaaaaagata acataccagc
      961 cttacatagt catctgcctg aagccatggc attttcattt gacgatcaag ccttgctgat
     1021 aagcagctta gaaaatgctg acttggtatt gattggtcca ggttttgggg aaaatagcag
     1081 agctgaacag ttattggact ttgtttttga acatttatct gaccagcaga ttttagttct
     1141 tgacggctca gcccttacct tagtcgcaaa gcaaaacaga aagaacttcc cgtgtaaaca
     1201 agtcatcctg acaccccacc agaaagaatg ggaacggtta tcatccattc cgattgctga
     1261 ccaaacaagc caaagaaatc ttgaagcctt gcaatctttt caagaaaata caattcttgt
     1321 agctaaaagt tctgctacac aaatcctaaa aacccagcca aaccaagtca ccccaattgg
     1381 agctggtggt ccttaccaag caacaggagg tatgggagat actcttgcag gtatgattgc
     1441 aggatttgct gtacaatttc cccatgttca actatatgaa agaatccttg tagcaaccta
     1501 cctccactcc tatattgccg accaactggc tcaagattat tatcttgtaa agccaactga
     1561 tgtctcaaga aacatccaaa agacaatgct tcaatttcaa acacaaacaa ccgcctaatc
     1621 aatgattaag cggtctttta tataacaaac tcgtgattaa agcctgacaa atggtagaaa
     1681 atgatactca atgcaaatca aaagtagcct aggaaacgaa gccgaagata gaactggagt
     1741 tcatcaaggc aagttgacaa cggataattt agattttcga agagtatgac tatattttct
     1801 tagacttctt ctttatgacg tcgtttgctt accaacagag tccctagccc aataatgaca
     1861 ccaagaacaa gatagtatct cgtatcattg tctccagtat ttggtagttg agtcacctgt
     1921 ttttcttgat tagggctaga tagactagct tgcaaagtga ccggacgagg taaagttggt
     1981 tgagggtttg gcttctgacc tatcggtaca tgccctgaat tcccagtatc ttttacagga
     2041 ggtgcctgta catcaacttt ttctgagtct ataggtggag gcgttacagt gccttcatct
     2101 tttttgtcag tggcagtatt tgctggctct ttggcatcat ttgttgaagt agcaacacca
     2161 tccagttctg cctgagcgct tgtcagaacg gctagagctt gatcgacact tgcttggctt
     2221 gcagattcat cagctagaat cgctttcgct gcttcaactg cctggtcata agcttgtttc
     2281 acgttttcag atgcattgag atacttagca tctgtcgctt ttaatacgga agaaacggat
     2341 actgcgctac gaagggctga aatatcagtc ttttgaccat ctaagttggc tttcgccgct
     2401 aacaagtccg ccaacgcttg gttgacaact gcctgtgtta cattctcttg gttcaataca
     2461 agttgtgctg aacgaacagc tgtatcatag gcaatttgtt tggtattttc agcattgtaa
     2521 taaataaagt ttgcctgagt cggtgtgtag tttgatactt cagcaattag tttttccgta
     2581 tcggtagcct gaccgtttag ctgttctctc gccgccacaa gactggcaac tgctgaatct
     2641 acttgtgcct gattgtgttt gttggcatat actgcattgg catcttctaa tgctttatca
     2701 taggcagttt gaagttctgg actagcattg taataacgcg ctgtttcttc aagtcccgca
     2761 agttcagcaa tcagttcttt caaagcaact ttattaatca aggttaattt cttaacattt
     2821 gactggtttg caagtactgc tacgtctaat tcttccaaaa attcatagcc ttctgggagg
     2881 gttggaagga tagtgtaggt accaactggt acaaatttac cataatcggt cttagaatat
     2941 ttagcatttg gtagctgaat agtctggcca tcagcagtta ccagttggat ggttgaacca
     3001 gaaggtagta atgcatcaat atctaccagc aagttggcct tatctttcaa agtcacatag
     3061 aaattcacct cggcagtgct attttcttcc gaaatcgtca cgactgcttt tgtttcacct
     3121 gctaggcttg accattctgt atcatataag aataaatcaa aggtgtaagt accaaatggt
     3181 agcttaagaa cgctagtatc gccggcatat cgtggtaatt ctgcaacaat cttgcctgtt
     3241 tcatctgtga ctgagtaaga gaaaagtatt ggtacaggac tatttgtatc tttatcaaga
     3301 atattgacag ttaccaaccc tttttcattg ccgatactga tcagattctc tactttttca
     3361 tagctgatgt taccagcata atcctctact gtgtagtaga attttgaaat atctgcaagg
     3421 tcaagaggca atgtaaagga gccatcgtcg ttttgtgcca caaatacctt gttatcagaa
     3481 acggttacat caccattttc taataaggaa ggaatagttg tcataccgct tgcatctgct
     3541 acaagataga atacttgctc gcgatatagc ccggattctc ctttttcaat ggctggacga
     3601 gggttaaatg taaagtttgt ttcatcatag gtagctgtgg tgataactgg tgattctcta
     3661 tcgatgataa cgtcgaaaat catagtttgt actgctgcac ctggaacttc agatgagtag
     3721 gtcaaaacgt attgatactt accatctgct aaagcatttc cctcgctgtc tgtcccattc
     3781 cattcagtag ggtaaataat gcttgatttt ggatttttag gatcaccact atagaagttc
     3841 ttattgcctg actgtggttg actttcccaa agtggatttg ttcgttcggt atcatctgca
     3901 gcatagacgc ttgcgactaa atccgtataa tttctcaaga agacaccttt gaaagcgagc
     3961 gaatcttggt tgtcatcccc atttggcgag atagctaaat gaggcttacc agactcatca
     4021 agctctaaaa caaaatatcc tgcttcattt ttaaatgtac caagtgtctt gatcgcaaag
     4081 tcagatcgtt tgtctgtaga atagattaac tccgtacttc ctgtaacaag acctgtgtag
     4141 tgatggctga tgtcaacagt atctggttgt gctgtaacag gttcaaagta gaagcccccc
     4201 ttaccatcgg caataagatt gtaaatcggc tcttctagaa cggctagatt ttggaattcc
     4261 ccacggaaac caacgtatgg aatgctgaca atatcaccgc catcggctac atctgtaaat
     4321 cgaacaaaac cttcaagata gtaaccgttt ttcattaaac ctgtcaattc ttctgcaaag
     4381 cttgatgcat cgacattaat tgtaacagtt gtacttgaat tggctttcac agtcacctta
     4441 ccgccaggaa tctctgctaa tagacgcgga gccaaggtga tcaatccgtt ttggacagta
     4501 tccgttgtta attgcgttga gtagtttaaa gtcttatctt cgtttgtaat gttatgaagt
     4561 ttgaccgtaa agctgaatgt atcctcaaca tttcccaagg taatgctgcc ataaccgtct
     4621 tcgccagtca aatataaacc tgtagaaata gctgccgcag tatcgatgat acctgcacct
     4681 tgttgacgag aggaagtgta ggctgttgtt tctttgttca catgcgcttt agcagtagac
     4741 ataagcaagt gttttactaa ggcttcgatt tcttgagggg acttagtagg gtaagttgcc
     4801 tgtaaatatt gttttactag tacggctgct cctgctacgt gtggtgaagc catacttgtt
     4861 ccctgcatgt tggcatagtc attatcattg atggctgcat aaatagcacc acctggagca
     4921 gctaagtctg gttttagctc gccatccgct gatagacccc aacttgaaaa atctgaaaga
     4981 agacctgctt tggggttagg acgaatgtct gtttcgttat tgaacgcaat cttatatggt
     5041 ttagccgcta aagcttcacc gaattccaat ggaatgaaga tagatggaat tgcgatagct
     5101 gtatcatcca gttgcatgct cacattggct tcacctgggc ggctattgaa aataacgacc
     5161 cctactgccc ctgcagctgt tgcattggct attttttctg agaaactgat ggttcctcgt
     5221 ttaataagcg caagttttcc agtcaaattt aaaccatcaa aatccgaagc ttgaccgatt
     5281 cccgcataga catattcata ttctttcccg atttcaaatg gtacggaact tttctctgga
     5341 ttatcaaacg aacttttacc gtaattcaag tcagcattgt tttctaagcc aatgatatta
     5401 attactttac taccaaccgt tgtgttattg taagaagcga cagaaattgc atcgcgagct
     5461 gttgaaggtg taccgaccaa gccataatct ggataatcgg ctgacggatt agaatgaccg
     5521 gaaccaaatg ttccatcatt accagctgca ataacaacag aaacccctgc acgacgagca
     5581 gcctcgattg ctgcagtcac attttcattc atgttaacaa cagagccatt agctcctccc
     5641 aggctgaggt tgatgctatc tgcacctaat tttacagcat cttcaatcgc ctttacgtac
     5701 aatgctgcgc ctgttgtagc tttgaggtct gagaatacac gcataaacat gacttgcgct
     5761 tcaggagcta caccatacat taattgttca gcgactggtt gtgtcggatt tcctgtggca
     5821 atactcgtta cgtgcatacc gtgtgagcgt ttgtcttctt ctttcaagac agtattcaca
     5881 tcaacatagt tataaccaaa tacaacctta tcgttaaacc attcaccgta ggtaattcct
     5941 gctgcttcta tctctttttc tgatttatat tttgcagttg agagatctga aatatgcaat
     6001 acatcgtggt caacgtcaag acctgaatct atgattgcaa ctactgttcc ttcgcccttg
     6061 taaccactat cccaaacttt aggtactgta atgatcgtat tgctatcaat gttttgtggt
     6121 tttgcttctt cctgattagt aatagcagta gtctcatctg ctacggcaag cttctcatct
     6181 tcttctactt ttttctctga aatagctgga gtttctacag ctggttgagt cgcttctact
     6241 tctgtatttg tgatgttttc aagagcttct gagccaagtg tttcctctac attatctgta
     6301 gtggttacat cagttggggt agcctccaca gaagtgtcaa ctaactcctc gactacggga
     6361 ctttctgagg ctgattcgct gacgattacg tcaggaacag ttgcttccac cttagtctct
     6421 acaaggcttg tcaattcatc tgcagctacc gatggtgcac ctgcaaacaa aaaaactgca
     6481 cccaaaagaa cagacacagt tccaatttta tacttccgaa gtgagaaagt ttctttcttt
     6541 ttcataactt ttcctcctag tttttctcct tcattattgg caaaaccaat aagtatatta
     6601 aaacataaaa ctatcagcat tgcaagtata ttctgaaaat tcagttattt attcaaacta
     6661 taactaggta tcaataatat ctataaccat agatacagat aatacacact aaaaagggag
     6721 tgagcaagac atccatgatg gctccgtcct tacccacaga ataatgaaaa taagcataaa
     6781 gccctcacta agatt
//
LOCUS       DASGCC010000105         6725 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.105, whole genome shotgun sequence.
ACCESSION   DASGCC010000105 DASGCC010000000
VERSION     DASGCC010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6725
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.105"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            5..805
                     /locus_tag="U1404_001552"
     CDS             5..805
                     /locus_tag="U1404_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5348491.1"
                     /translation="MKKILALAATVLAGLTLVACSSTSSQSALDKIKEKGTLVVATSP
                     DYAPFEFQALVDGKNEVVGADIMLAQKIADELGVKLEVSAMSFDNVLSSVQNGKADIA
                     IAGLSYSEERAKVFDFSESYYQISDVLLIKKDSANSLTSIDAMSGKTLAVQKGSTQES
                     YAQENISQANLISLTLMGEAVNELKSGKVDAILMDSPVAAGYVSQNSDLAVASVEFPT
                     IDENSKVIALPKGSTELKTAIDKVIAEVKASGEFDTFLEKAATYTSVE"
     gene            complement(1079..2917)
                     /gene="glgB"
                     /locus_tag="U1404_001553"
     CDS             complement(1079..2917)
                     /gene="glgB"
                     /locus_tag="U1404_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HEM5348492.1"
                     /translation="MTEFTDLDLYYMNAGEHTTLYEKMGAHIIKERNKIIGTQFRVYA
                     PNAREVFLVGNFNEWQRSHSMEREIDGVFQLYVDGLKSLEDYKYLIITHDGREIYKAD
                     PYAFFSQVRPDTASTTYNSRYKFKDDIWMYNRVNYDFKEQPVSIYEVHLGSWKQKFAN
                     KNEGGAPVEAFNSYKEITPLLIEHIRENNYTHIELLPITEHPLDASWGYQVTGYYSPT
                     SRYGKPDELKYLVDQCHQAGIGVILDWVPLHFCKDAHGLYQFDGSWLYEYSYEQDREN
                     HQWGTANFDLGKGLTRSFLLSNLKYWLEYFHFDGIRVDALSYLLYWRGETDEDKINHA
                     AIDFIKRVNAMVHTDYKGVLMIAEDSSSFPKVTHSLENGGIGFDMKWDLGWMNDTLKF
                     VERPAIYRKYHSNEITFGMYYNQNEQFLLPLSHDEVVHGKHSIIEKMNGDYEDKFHLA
                     RVYYSFYFAHPGKKLLFMGNEWGHIREWHEYTEMDWGLLQFPIHHSFYQMMKTLSTFY
                     KEHDAFWKYDYQAYEKGFNWVKIDEEASLYAFSRTSDEQEILTIHNFNDQELFDVHLD
                     LPADSEYKLVFSSNAIPMDTFSLYPDENGARITVPRLTSFYLERVK"
     gene            complement(2990..4435)
                     /gene="glgA"
                     /locus_tag="U1404_001554"
     CDS             complement(2990..4435)
                     /gene="glgA"
                     /locus_tag="U1404_001554"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HEM5348493.1"
                     /translation="MTKKSVLFVASEGLPFIKTGGLADVIGSLPKELVKQGLDVRVVL
                     PLYKKIAINNHADFDYVSSFDVRAGDIQSMANVYSQVVDGVTFYFIEHRDFFERDELY
                     GYDDDAMRFGYFQHATCRLLEALHFFPDVMHTHDWHTAALPFLCRTFYSYREEFCNIK
                     HVFTIHNLAFQGIFHKQALWSALGMDYSYYLDGIARFHDECISFMKLGILYADKVTTV
                     SETYAREILTEEFGENMQHVLELRKYDLVGIVNGIDYDSWDSQTDQYLVRNYSLETIE
                     SKKANKLALQAQFALPQDENVLLIGIVSRLTWQKGFYLLTEVLGHLLQAHVQFVILGN
                     GEEDIENAFNHFKHAYPDKFAFYRGYNEPLAHQIYAASDLFLMPSMFEPCGISQLISM
                     QYGTLPLVRETGGLVDTVAPYNMSTKEGTGFSFGGRDAYNMRQVYDLALQTYYDRPDD
                     WYAMVEQAMKRDFSWTASAEKYIWLYREISG"
     gene            complement(4444..5559)
                     /gene="glgD"
                     /locus_tag="U1404_001555"
     CDS             complement(4444..5559)
                     /gene="glgD"
                     /locus_tag="U1404_001555"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase subunit
                     GlgD"
                     /protein_id="HEM5348494.1"
                     /translation="MLRNTLGIVNIEGNNVHFGDVMKHRGVQAFGFLGRYRLIDFALS
                     NMSNSGITEFQVYMPAEMRSTIQHVGTGKHYNINSKRGTLRLLNSATDPNSVYRHDIN
                     AFTENIHYIEKSTKDYVLVAPSYFIYSQDFSKVMDDHIATDADITVLYKNVSDAKENF
                     IGCQTLKFGEDRRVVAFEENHGKYKNRPVSLEAYIMKRTTFIDLIKRANKVSSLYWLK
                     DILRDTVDQYKIMGYAHRDYVACINTTASYFNTQIELIDQDTRKLLFKHDWPIHTQTS
                     DSSPCLYGPLAEVKRSLISNGANINGQVENSVIDRDVIIEEGVVIKNSIILNGVTIKS
                     GANIENAIIDKATKIIHPIDIKGSETSPSYLKPHQII"
     gene            complement(5572..6699)
                     /locus_tag="U1404_001556"
     CDS             complement(5572..6699)
                     /locus_tag="U1404_001556"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEM5348495.1"
                     /translation="MAQNKMLAMILAGGRGTRLEGLTKKVAKPAVAFGGKYRIIDFPL
                     SNCANSGIDIVGVLTQYEPVLLNSYVAQSQRWGLDVQGSGVFVLPPSEKIEGFGLYKG
                     TADAITQNIDFIDLHDPEYVLILSGDHIYKMNYDKLLDTHIQKKADATIAVIEVPIKE
                     ASRFGIMNTDEDYRIEEFEEKPENPKSNLASMGIYIFTWKTLKKYLQEDDKLDTSSHD
                     FGHDIIPKYLEDGRTLIAHPFRGYWKDVGTVNSLWESNMDLIDHAGDLDLSDRSWRIY
                     SEDKGSPAQVIGATATVKSAYIDKGAVIDGTVEHSVISTDVQVNQNAVVKNSVVLPGA
                     IIGEGVELDYVIVAENIKIADGVKLTGDIDHILLIDKNVTK"
BASE COUNT         1977 a         1329 c         1378 g         2041 t
ORIGIN      
        1 aaatatgaaa aaaatcttgg cattagcagc aacagtttta gcaggactga cattggtagc
       61 ttgttcttcg acatcatcac aatctgcatt agataaaatt aaagaaaaag gaacattggt
      121 agtggcaact agtccagact atgctccatt cgagtttcag gcactagttg atggaaagaa
      181 tgaagttgtt ggtgcagata ttatgttggc tcaaaaaata gccgacgaac ttggggtcaa
      241 gcttgaagtt tcagcaatga gttttgacaa tgtattgtct agcgttcaaa atggcaaagc
      301 tgatattgca attgctggtc tatcttattc ggaagagcgt gcaaaagttt ttgatttctc
      361 tgaaagttac tatcaaattt ctgatgtatt acttatcaaa aaagatagcg ctaattcact
      421 cacttcaatt gatgctatga gcgggaaaac tctcgcggta caaaagggtt caacacaaga
      481 atcctacgca caagaaaaca ttagtcaagc taacctgatt tctttaacct tgatgggtga
      541 agccgtaaat gagctcaaat caggaaaagt tgatgctatt ttaatggatt ctccagttgc
      601 tgctggttat gtttcacaga attcagattt agccgttgca tccgttgaat ttccaacgat
      661 tgatgagaat tcgaaagtca ttgctttgcc aaaaggtagt acagaactaa aaactgcgat
      721 agacaaggtt atcgcagaag taaaagcaag tggtgagttt gatactttcc ttgagaaagc
      781 tgcaacatat acaagtgttg aataagagaa acgagaggct gggtaaaaag tccaaagcca
      841 cttctcagag ttcgtgtcaa catctcagcg cagtggttga ttggcagatt tgttcgtgtt
      901 tcacactcca aatctgacct aatcaactgt gcgggggtgg gaagacgaac tcttttttga
      961 ctagttgagt tctttcccac tcccttttgc atgcaaaaaa gaatggagta agtgagctac
     1021 acccaaaaag ttagacagaa aatttgggtc ggatcaatac tccatttttt atagataatt
     1081 atttcacacg ctctagataa aaactggtca aacgtggtac agtaattcta gctccatttt
     1141 catcgggata gaggctaaat gtgtccattg gaatagcatt agatgagaag acaagtttat
     1201 attcgctgtc agctggcaaa tccaagtgta catcaaatag ttcttgatca ttaaagttat
     1261 gaatagtcaa gatttcttgc tcatcactag tgcgagaaaa agcatacagg cttgcttctt
     1321 catctatttt tacccaatta aatccttttt cataggcttg gtagtcatat ttccagaaag
     1381 catcatgttc tttatagaaa gtagataatg ttttcatcat ttgatagaaa gaatggtgga
     1441 ttggaaattg tagcagtccc cagtccattt ctgtatattc gtgccattca cggatatgac
     1501 cccattcatt tcccatgaag agtaatttct ttccaggatg ggcgaagtaa aagctgtagt
     1561 agactcgagc cagatggaac ttatcttcgt agtcgccatt catcttctcg ataatggagt
     1621 gcttcccatg aacaacttcg tcgtgcgaaa gtggtagtaa gaattgctcg ttttggttat
     1681 agtacatacc aaaagtgatt tcatttgagt gatattttcg ataaatagca gggcgttcca
     1741 cgaattttag tgtatcattc atccagccca gatcccattt catatcaaat ccaataccgc
     1801 cattttctag agaatgtgtg actttaggga agcttgaaga gtcttcagca atcatcagga
     1861 ctcccttata gtcggtatgg accatggcat tgacacgttt gataaagtca attgcggcat
     1921 gatttatctt atcctcatct gtttcaccac gccaatagag gagataagat agtgcatcaa
     1981 cacggatgcc atcaaaatgg aaatattcca accagtattt taaattggaa agaaggaaag
     2041 aacgagtcag cccttttcca aggtcaaaat tagcagtccc ccactggtgg ttttcacggt
     2101 cttgttcgta ggagtattcg tatagccaac tgccatcaaa ctggtagagc ccatgagcat
     2161 ctttacagaa atgaagtggt acccagtcaa gaatcactcc gattcctgct tggtgacatt
     2221 ggtcaactaa atacttaagt tcatctggct tgccatagcg actagttgga ctgtagtagc
     2281 ctgttacctg atagccccaa gacgcatcga gaggatgctc ggtaattggc aataattcaa
     2341 tatgtgtgta gttattttcc ctgatatgtt cgatgagaag tggagtaatt tccttataac
     2401 tattgaaagc ttctacagga gctcctcctt catttttatt agcaaatttt tgcttccacg
     2461 aacctaagtg cacctcgtag atggatactg gctgttcttt aaaatcatag ttaacacgat
     2521 tatacatcca gatgtcatct ttgaatttat aacgcgaatt gtaggttgta gaggcagtgt
     2581 ctggacgaac ttggctgaaa aatgcataag ggtcagcctt atatatttca cgcccatcgt
     2641 gtgtgataat caggtattta taatcttcaa gggattttaa tccatctaca taaagttgaa
     2701 acactccatc aatttcacgc tccatagagt gactgcgttg ccactcgtta aagttgccaa
     2761 ctaagaatac ttctctggca tttggggcat agacacgaaa ttgggttccg ataattttgt
     2821 ttcgttcttt tataatgtga gcacccattt tttcgtaaag agtggtatgc tcaccagcat
     2881 tcatataata taaatctagg tcagtaaatt ctgtcatagc aatctccatt gccgaaaagg
     2941 agtggactag ggtcacactc cgattcagtt tattttttca tcttatttcc taaccactaa
     3001 tttcccggta tagccagatg tatttctctg ccgaagctgt ccaactgaaa tcacgcttca
     3061 tagcttgttc aaccatggca taccagtcat cgggacggtc atagtaggtt tgaagggcta
     3121 aatcatagac ttgtcgcata ttgtaagcgt cacgccctcc aaagctaaaa ccagttcctt
     3181 ctttggtaga catattgtat ggtgctacag tatcaaccaa gccacctgtt tcacgcacta
     3241 gagggagtgt tccgtattgc attgaaatca actggctaat gccgcatggt tcaaacatag
     3301 aaggcatgag gaagagatca cttgctgcat aaatttgatg ggcaagtggt tcattgtaac
     3361 cacggtagaa tgcaaattta tcaggataag catgtttaaa gtgattaaag gcattttcaa
     3421 tgtcttcctc accattgcct aagataacaa attggacatg ggcttgaaga agatggccaa
     3481 gtacctcggt caagaggtag aacccttttt gccatgtcaa acgagagacg atacctatca
     3541 ataggacatt ctcatcttgt ggaagagcaa attgtgcttg cagggccagt ttattagcct
     3601 ttttactttc aatcgtttca agactataat ttctcacaag gtactgatct gtttgactat
     3661 cccaactgtc atagtcgata ccattgacaa taccaaccaa gtcatatttg cgcaactcta
     3721 gtacatgctg catgttttcg ccgaattctt ccgttaggat ttcgcgagca taagtttcag
     3781 aaactgtagt aaccttgtca gcgtatagga taccaagctt catgaagctg atacattcat
     3841 catgaaaacg tgcaatacca tccaaatagt agctatagtc catgccaagc gctgaccaaa
     3901 gtgcttgttt gtggaaaatt ccctgaaaag ccaagttatg aatagtgaat acatgcttga
     3961 tattgcagaa ttcttcgcgg tagctataga aagtacggca aaggaatgga agggcagcag
     4021 tgtgccagtc atgtgtgtgc atgacatccg ggaagaaatg aagtgcttct aacagacgac
     4081 atgtagcatg ttggaaatag ccaaaacgca tggcatcatc gtcatatcca tatagttcat
     4141 cgcgttcaaa gaaatcgcgg tgctcaataa aatagaatgt tactccatca acaacctgac
     4201 tgtaaacatt tgccatagat tggatgtcgc cagcccgcac atcaaaactt gatacgtaat
     4261 cgaaatcagc atggttattg atagcaattt tcttatagag aggaagtacc actcggacgt
     4321 ccaacccctg ttttaccaat tctttaggta aggaaccgat tacatcggcc aaaccaccag
     4381 tcttgatgaa tggaagtcct tcagatgcta caaagagaac agattttttt gtcatgttag
     4441 ctcctaaatg atttggtgtg gtttcaagta tgaaggcgaa gtttcgcttc ccttgatgtc
     4501 aattgggtga ataattttag ttgctttatc gataattgca ttttcaatat tcgccccact
     4561 cttgattgtc acgccattga gaatgattga gtttttgata acaacacctt cttcaatgat
     4621 aacatcgcgg tcaatgactg aattttcgac ttgaccattg atattcgctc catttgaaat
     4681 taggctacgt ttgacctctg ccaatggacc atacaaacat ggtgagctat cacttgtttg
     4741 ggtatggatt ggccaatcat gtttgaagag gagtttgcgg gtatcttggt caatcaattc
     4801 aatttgagta ttgaagtagg aagctgtcgt attgatacat gcgacataat cacgatgtgc
     4861 atagcccata atcttgtact ggtcaactgt atcacgtaaa atatctttta accagtagag
     4921 agacgacact ttgttagcac gtttaatcaa gtcgataaat gtagtccgtt tcataatgta
     4981 ggcttcaagg gaaacgggac ggtttttata tttaccatgg ttttcctcaa aagctacgac
     5041 acgacggtct tcaccaaatt tgagagtttg gcagccgatg aaattttctt tagcatctga
     5101 aacgttttta taaagaacgg taatatcagc atccgttgca atatggtcat ccatgacttt
     5161 tgaaaaatcc tggctataga tgaagtaaga tggagcaact agcacataat cttttgtaga
     5221 cttttcgatg tagtggatgt tttctgtgaa ggcattaata tcgtgacgat agacactatt
     5281 tgggtctgtt gcgctattga gcaagcgaag ggtaccgcgt ttgctgttga tattatagtg
     5341 tttccctgta ccaacgtgct gaattgttga acgcatttcg gcaggcatgt atacttggaa
     5401 ttctgtaatt ccagagtttg acatattgga tagagcaaag tcaattaggc gataacgacc
     5461 taagaaaccg aaagcttgta cgccacggtg cttcatcacg tcaccaaaat gtacgttgtt
     5521 tccttcaata tttacaattc cgagagtatt tcttagcata gcagtccttt cttacttagt
     5581 cacattcttg tcaatcaaga ggatatggtc gatgtctcct gtgagtttaa ctccgtcggc
     5641 aattttaata ttttcagcga cgatgacgta gtcaagttca acaccttcgc cgataatagc
     5701 accaggcagg acgacagaat tttttactac ggcattttgg ttgacctgta catctgttga
     5761 aataacagaa tgttctactg taccatcaat aactgcccct ttatcaatat aggcagattt
     5821 aacagttgca gtcgcaccaa tcacctgagc aggtgagccc ttgtcttctg agtagattct
     5881 ccatgagcgg tcagaaaggt ccaaatctcc cgcgtgatca atcaagtcca tattggattc
     5941 ccagaggctg ttaacggtac ctacgtcttt ccaataacca cggaatggat gggcaatgag
     6001 agtgcggcca tcttctaagt atttcggaat gatgtcgtgc ccaaaatcgt gagatgaagt
     6061 gtccaatttg tcatcttctt gaaggtactt tttcaaggtc ttccaagtga agatatagat
     6121 acccattgat gctaaattgc tcttaggatt ttctggtttt tcttcaaatt cttcaatacg
     6181 gtaatcttcg tccgtattca tgataccaaa acgtgaagct tctttgatcg gaacttcgat
     6241 aaccgcaatc gtggcatctg cttttttctg aatatgtgta tcaaggagtt tgtcgtagtt
     6301 catcttatag atgtggtcac cagacaaaat caatacgtac tctggatcgt gaagatcaat
     6361 gaaatcaatg ttctgtgtaa tagcgtcggc tgtacctttg taaagtccga aaccttcgat
     6421 tttttcactc ggtggtaata caaagacgcc agatccttgt acatcaagtc cccaacgttg
     6481 agactgtgca acgtatgagt tcaagagaac aggctcatac tgagtcaaaa ctccgacaat
     6541 atcaatacct gagttggcac agttactgag aggaaagtca ataatgcggt actttccgcc
     6601 aaatgcgacc gctggtttgg cgactttttt tgtcaaccct tctagacgtg ttccacgtcc
     6661 accagcaaga atcatagcta acattttatt ttgagccatc taaccactcc ttaatatata
     6721 tgata
//
LOCUS       DASGCC010000106         6562 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.106, whole genome shotgun sequence.
ACCESSION   DASGCC010000106 DASGCC010000000
VERSION     DASGCC010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6562
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.106"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            106..423
                     /locus_tag="U1404_001557"
     CDS             106..423
                     /locus_tag="U1404_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5348496.1"
                     /translation="MYYPVSSILIEFLVLAIVEKQDSYGYEISQTIKIVADIKESTLY
                     PILKKLEKAGYVTTYTQEFQGRKRKYYTITPAGREHLPFLQGEWNSYKDHIDGIIEGS
                     LRK"
     gene            420..1532
                     /locus_tag="U1404_001558"
     CDS             420..1532
                     /locus_tag="U1404_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5348497.1"
                     /translation="MTRADYLNQLEQALFQLHPSARQEALDYFNEYFDEKDNDEEAII
                     ELGTPDEAAKEIIANLPEDALIPEKDQASPHSSKPFDFNFDFDFQFDWENFFNNFKHS
                     AYQARERIKLTSKIEELPEFSNLQISLEDQALSVQSYEGEAVLLHNPVSEDGSYQAFD
                     YQLVQDSLYISSKPTPNHLYFSNNQISSAILKIPKKLLPLTNLNLKTADSSLTIVDVQ
                     VCEQMVVNAKDSSISMTKVSCPSSALQLEDSTLTISDGQMSELKLEASDAVITLSSMS
                     LSDARITLEDCVWKLKDFVLEKSLNCQAEDSVLTYKPSTDISLDIWEEDSSLKLPKDK
                     AFTMMKEGDITHLSYKQENSPAQLVIHCQDCQLSVG"
     gene            1544..2122
                     /locus_tag="U1404_001559"
     CDS             1544..2122
                     /locus_tag="U1404_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM5348498.1"
                     /translation="MNRKEYLQNLEKYLKNLSKEDFQDTLDYFNEYFDEKDNDEEAII
                     ELGTPDEAAKEIIANLYDKERIEDKPNTSNMVWLTILAILAAPIGVPLAITLVALFIT
                     LLLIIFSLFLLLISLWIVLLSLAIAQLLLAFDLLTLSWSSSLLFTGLALVCLALTLLG
                     SKFTLDLGSKTFLLVLHWVQRKIRKGGYYETA"
     gene            2109..2962
                     /locus_tag="U1404_001560"
                     /pseudo
     CDS             2109..2962
                     /locus_tag="U1404_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917252.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
     gene            complement(2998..3357)
                     /locus_tag="U1404_001561"
     CDS             complement(2998..3357)
                     /locus_tag="U1404_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEM5348499.1"
                     /translation="MSIFTTILASIVAIEHLYIMYLETFATHSDSTSRVFNMEKEELQ
                     RKSVTTLFKNQGIYNGLLAVFLIYGIFTGNLEVTTIFVLFVIGAAGYGAATSSPKIIL
                     TQGGPAILALISILLFK"
     gene            complement(3377..3802)
                     /locus_tag="U1404_001562"
     CDS             complement(3377..3802)
                     /locus_tag="U1404_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5348500.1"
                     /translation="MQEMEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAP
                     LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP
                     SAHHQAIKTSMNQILTVEESEQFLATLDKLLIGLQNLPI"
     gene            3963..4721
                     /locus_tag="U1404_001563"
     CDS             3963..4721
                     /locus_tag="U1404_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM5348501.1"
                     /translation="MENTPRLNLVIDVLMLAGAILAQSGAEIHRVEDTMIRIAHSHGI
                     EQANVLAIPAAIFFSIDHTNISRMKRIVNSNYDMQKVCDVNQISRSLANEEISLEEAW
                     SQLNAIKQQKPPYNNIQITLAAVVAAPFFTIMFGGSLLDAAGAVLATALAFPISLIVE
                     RYIGIDFVTTFVGAFVFSLTSYLLSATTTLPINPNLINAGAVMPFVPGIAFTNAVRDL
                     MTNHINTGMTKFFQTALIILSLGAGTTVAFMLVG"
     gene            4725..5177
                     /locus_tag="U1404_001564"
     CDS             4725..5177
                     /locus_tag="U1404_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM5348502.1"
                     /translation="MTPVHFLLQALASYIAIAAFLIVLNVQRKMLVPGGLLGMLVWLI
                     YLLLLEPTNVLIATFFAAIIGSCVSQIMSIWLKTPSVIFSLAILAPLVPGYRAYMTTT
                     YFVSGDHAQALTNITTVLTLALVIPIGMASGTILLRLYKVLRTGKKAA"
     gene            5234..6472
                     /locus_tag="U1404_001565"
     CDS             5234..6472
                     /locus_tag="U1404_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM5348503.1"
                     /translation="MNQNVTNLKLAERGALLSIGAYIVLSGIKLVAGQLFHSDALRAD
                     AFNNISDIIGNIAVLIGLKMAQKPADTDHKFGHWKMEDLASLITSFIMFVVGFQVLYD
                     TLQKLISNSSVEVDIMGAIVGIFSALVMLAVYLYNNRLAKKVRSKALEAAAKDNLSDA
                     VTSIGTSIAIFAAAFNLPIVDKIAAIIITFFILKTAYDIFMESFFTLSDGFDENLLKK
                     YEEDILKLPKIVSVKSQRGRTYGANIYLDVVLEMNPDLSVYESHEVTEQVEQLLTLKH
                     GVFDVDIHVEPSEIPHDEMYEHVYDKLFRFETEIQAHANGYEELIDDQYLLIDAKGHY
                     RNKTQILADHPIQTTYLSNYQMTSISHKSKLVTFEIGEYVHTSLWRRHENWTVIFHQI
                     SKKQASQIEATEKISDLHNP"
BASE COUNT         2024 a         1459 c         1178 g         1901 t
ORIGIN      
        1 aattttgatg atatataaaa attttatata atcgcttgat tttgctaaac aataggtata
       61 taatttatat ataaaataat tacataaaga taaagaggtg agtttatgta ctaccccgta
      121 tcctctatct tgatagaatt tctggtatta gccatcgtgg aaaagcagga ttcctacggc
      181 tatgaaatca gccaaaccat caagatagtt gctgatataa aggaatccac actctaccct
      241 attttgaaaa aattggaaaa ggctggctat gtcaccacct atacccaaga atttcaaggg
      301 agaaagcgga aatactatac catcactcct gctggacgtg aacacctccc cttcctgcag
      361 ggtgaatgga atagctacaa agaccatatt gacggaatta tagaagggag cttacgaaaa
      421 tgacacgcgc agattatttg aaccaactgg aacaagcatt atttcaactt catccaagtg
      481 ccagacagga ggctttagac tactttaatg agtattttga cgaaaaggat aacgacgagg
      541 aagctattat agagctagga acacctgatg aagcagcaaa agaaatcatt gccaatctac
      601 ctgaagatgc cctaatcccc gagaaagacc aagcaagtcc acattcatct aaaccatttg
      661 atttcaactt tgattttgat tttcaatttg actgggagaa ttttttcaac aatttcaaac
      721 attcagccta tcaagctagg gaaagaatta aattgacgtc gaaaatcgaa gaattacctg
      781 agttttcaaa tctacagatt tcgctcgaag atcaggccct tagtgttcaa agttatgaag
      841 gagaagctgt cttattgcac aatcctgttt cagaagatgg tagctaccag gcttttgact
      901 atcaactagt ccaagatagt ttgtacatat ctagcaagcc tacccctaat cacctctact
      961 tctcaaacaa tcaaatcagc tctgctattc tcaaaatccc taaaaaacta ctgcccctta
     1021 ccaatctcaa tctgaaaacg gcagatagta gtctgacaat agtggacgta caagtatgcg
     1081 aacagatggt cgttaatgca aaagatagca gtatcagcat gacgaaagtg agctgcccaa
     1141 gctctgctct acagttagaa gactctacac taactatctc agatggacag atgagcgagt
     1201 taaaattgga agccagcgat gctgttatca ctctctcaag catgagcctt tcagatgcaa
     1261 ggataacatt agaagactgt gtctggaagt tgaaggattt tgtccttgaa aagagcctta
     1321 actgccaggc tgaagattct gtcttaacct ataaaccaag tacggacatc agtttggaca
     1381 tctgggagga agattctagc cttaaacttc caaaggataa ggcgtttaca atgatgaaag
     1441 agggtgacat cactcatctc agctacaagc aagaaaatag ccctgctcag ctagttattc
     1501 attgtcaaga ttgccagctt agtgtgggat aaaggaggtt tccatgaatc gcaaggaata
     1561 tttacagaat ctcgagaaat atctcaaaaa cctatcaaaa gaagattttc aagatacctt
     1621 ggactatttc aatgaatatt ttgacgaaaa ggataacgac gaggaagcta ttatagagct
     1681 aggaacacct gatgaagcag caaaggaaat cattgccaat ctctatgata aagagaggat
     1741 tgaagataag ccaaatacaa gcaatatggt ctggttgacc atcctcgcta tccttgccgc
     1801 cccaatcggc gtccccctag caatcacctt ggtcgccctc ttcatcaccc ttctcctaat
     1861 catctttagc ctctttctgc tccttatctc actctggatt gtcctcctca gcctcgcaat
     1921 cgcccaactt ctcctcgcct tcgacctcct cacactctca tggtcctcct ccctcctctt
     1981 cacaggcctg gccctcgtct gcttggccct cactctattg ggtagtaaat tcactctaga
     2041 ccttggaagc aaaaccttct tgcttgtttt acattgggta caaagaaaga tccgcaaagg
     2101 aggctattat gaaacagctt aaaccattta cgaaaatcag tctgagcctg ctaggtcttg
     2161 gagccattct aagcctcatt ggctacctgg ctggcggttg gacaaatatg aaaactgttg
     2221 cagaaaacta ttttcagccc caaacggcaa gctttacgga tattcgttct atagaggtca
     2281 atgaaaaact gtccattatg ccctcgcctg acaaccaatt ccacctccac tactatcgaa
     2341 atcagcataa agacattgac ctcctcagtc accaagtcca agatggaaaa ttaaccattt
     2401 ctagtgccta tcaaggcatc gttacttatg atggtttact cgaacctatc ttaaatcttg
     2461 tcaatgacca gaatgttgcc tactaccaac ctgtcttaca ggtccctaaa atagcacaat
     2521 cgaaacactc tcagggagca ttcaaggaga tgtctatctg gataaagtga ctattcaaga
     2581 tttccaactc tttgttgaaa atggtgacat gttgattgaa aacagtcaca tcagccttat
     2641 taggctatta cacatcaatg gagaagtagc aatcaatcag tccacattaa caagtccagc
     2701 ggacatcacc gatactacca gaagtattct aactgttgag gatggtgatt ttaaagcaga
     2761 aaacctaaaa ctagagggaa agcatggcat cagtaattac gatggttcaa tcgacatttc
     2821 tcttcatccc aaaacaaaaa ctgacatcca tatagatgcc agtcaaaata atctgggaat
     2881 tgaccttcca acctattcca atccccaagc cactaattac ctctatatct ctacactaga
     2941 tggagaactg aatattcagt aattgcaaaa agccctcctc acggaaggct ttttaactta
     3001 tttaaacaac aaaatagaaa tcaaggccaa gatagctggt ccaccttggg ttaagatgat
     3061 ttttggacta gaagtcgctg ctccgtagcc tgctgctcca ataacaaaca agacaaaaat
     3121 agttgtcact tcaaggttgc ctgtgaaaat tccatagata aggaagacgg ccaacaaacc
     3181 attatagatt ccctggtttt taaatagggt tgtcacagac ttacgttgta attcttcctt
     3241 ctccatattg aatacgcgac tagtagagtc tgaatgggtc gcaaaggttt ccaaatacat
     3301 gatatatagg tgctcaatag ctacgatact agctagaata gtggtaaaaa tagacataat
     3361 gtctcctctc aaaaaattat ataggtagat tttgcaagcc aatcaacagt ttatcaagag
     3421 tggctaggaa ttgctcgctc tcctcaacag ttagaatctg attcatcgaa gttttgatag
     3481 cttggtggtg ggcagaagga ttcgtgatta gcgcttctct agcctgctca gttggccaga
     3541 caagtacttc tctctgattg tcaggatttc gcttgcgaat gatatagccg ctctcttcca
     3601 acaatttgag atgacgcgta accgctgcgc ggtctatctg aagccgctcc tgcaaagcca
     3661 actgatgcag gggtgcatct tttagtaatg tttgcaatat tgaatagcgt gtcaaactga
     3721 ttcccaactg cttttcaaaa agattggaaa tcgtctcatc tgccactttc aatctgtata
     3781 acaaatcttc catttcttgc attatctacc tcttttgatt gattaatcaa tcattgataa
     3841 gtcaattata ctataatccg aacaattttc aactattttg cctctctata aaaaaatatg
     3901 ttgcctacac ctatattttg ttataattaa gaaaataact agcagaggga tgggacttac
     3961 ttatggaaaa cactcctaga ctaaacttgg tcatagacgt gctcatgctc gctggtgcca
     4021 ttttggcaca aagcggtgca gaaattcacc gagttgaaga taccatgatt cgtattgcac
     4081 attcacacgg aattgaacag gctaatgtcc ttgccatccc tgctgctatc tttttctcca
     4141 tcgaccatac gaatatttcg cgtatgaaac gcattgtcaa ttcaaattac gacatgcaga
     4201 aagtttgtga cgtcaaccaa atctcccgtt ccctagccaa tgaagaaatc agcctagaag
     4261 aagcttggag ccaattaaat gcaatcaaac aacaaaagcc accttataac aatatccaaa
     4321 taaccttagc tgccgtagta gccgctccat tttttaccat catgttcgga ggttctcttt
     4381 tagatgcagc aggtgctgtc ctcgcaacag ctttagcttt ccctatctca ctaattgtcg
     4441 agcgctatat tggaattgat tttgtcacca ccttcgttgg cgcctttgtc ttctcactca
     4501 cctcttattt attaagcgca accactactc tccccattaa tcctaacctg attaatgcgg
     4561 gggcagtcat gccttttgta ccagggattg cttttacaaa tgctgtaaga gacctcatga
     4621 ccaatcatat caatacaggg atgaccaaat ttttccaaac tgcgcttatt atcttatcgc
     4681 tcggtgcagg tacaactgtg gcctttatgc ttgtggggta atctatgaca ccagttcact
     4741 tcttattaca ggcactcgcc tcttatatcg ctatcgcagc cttcttaatt gttctcaatg
     4801 ttcaaagaaa aatgctggtc cctggtggac tcctaggcat gcttgtttgg cttatttatc
     4861 ttttactatt ggaaccaaca aatgtcttga ttgctacctt tttcgcggca attatcggat
     4921 cctgtgtcag tcaaatcatg agtatttggt taaaaacacc ctccgtcatc ttttcattgg
     4981 ctatacttgc accacttgtt ccaggctatc gagcctacat gaccacgact tatttcgttt
     5041 ctggagacca cgctcaagcc ctaaccaata tcactaccgt cttaacttta gccttagtca
     5101 ttcccatcgg tatggccagc ggaacaatat tattacgcct ttataaggtt cttcgaaccg
     5161 gcaaaaaagc agcctaaccc cttgaaaata aggggccttt ttgttaaaat gaaaacttat
     5221 caaaggagat gctatgaacc aaaacgtaac caatctaaaa cttgctgaac gtggtgcctt
     5281 gctatctatc ggtgcctata ttgtcttatc aggtatcaaa ctcgttgcag gacagctctt
     5341 tcattcagat gccttacgag cagatgcctt caataatatt tctgatatta tcggtaatat
     5401 cgctgtactt attggactaa aaatggcaca gaaaccagct gataccgatc ataaatttgg
     5461 acactggaaa atggaagact tggcaagctt gattacatcc ttcatcatgt ttgtcgttgg
     5521 tttccaagta ctctatgata ccctccaaaa gctaatcagc aattcttctg tcgaagtaga
     5581 cattatgggg gctattgtcg gaattttttc tgcactagtt atgttagctg tttatttata
     5641 taataaccgc ttggcaaaaa aagtacgttc caaggcctta gaagcagctg ccaaggataa
     5701 tctatccgat gcagtcactt ccataggaac ttctatcgcg atctttgctg cggctttcaa
     5761 cctccctatt gtcgataaaa ttgcagccat catcattacc ttctttatcc taaaaacagc
     5821 ctacgatatt tttatggaaa gcttctttac cctatctgat ggatttgatg aaaacttatt
     5881 gaaaaagtac gaggaagata ttctcaaact cccaaaaatc gtttctgtca aatcacaacg
     5941 tggtcggact tatggagcca atatctacct tgatgttgtt ttagaaatga atccagactt
     6001 atccgtttat gaaagtcatg aagtgactga gcaggttgag caactcctaa cactcaaaca
     6061 tggagttttt gatgtggata ttcacgtaga accatctgaa attccacacg atgagatgta
     6121 tgagcatgtg tacgacaaac tcttccgttt tgaaacagag atacaagcac atgctaatgg
     6181 gtatgaagaa ttgattgacg accagtatct cttaattgat gccaaaggcc actaccgaaa
     6241 taaaactcag atacttgccg accaccccat ccaaacgacg tatttatcaa attaccaaat
     6301 gacatctatt agccataaat caaaattagt tacgtttgaa attggcgaat atgttcatac
     6361 gtcactttgg cgccgtcatg aaaattggac tgttattttc catcaaattt caaagaaaca
     6421 agcctctcag atcgaagcta ctgaaaaaat ctctgatttg cataatccat aataaaaaat
     6481 aggaattttc cctggattat agggagaatt cctatttttt aaccttccct ttgagctatt
     6541 atcagtcttt tatactcaat tt
//
LOCUS       DASGCC010000107         6424 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.107, whole genome shotgun sequence.
ACCESSION   DASGCC010000107 DASGCC010000000
VERSION     DASGCC010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6424
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.107"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            130..1299
                     /locus_tag="U1404_001566"
     CDS             130..1299
                     /locus_tag="U1404_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM5348504.1"
                     /translation="MFRLAKEELEKLGAMITATEIYQQPGLWKEAHQLYFDQLEKIES
                     FLKSIKEKHDFVHVVFTGAGTSDFVGQSIANYLNQVNDLKHIRFSAIGTVELVSRPHD
                     YLQADLPTILVSFARSGNSPESVAAVEVAKQLVDKLYQVTITCAPEGKLALAAEGDVE
                     NLLLLQPAGSNDKGFAMTGSYSCMALTALLVFSPASQEEKAAWVEIIARLGQDVLDRE
                     DYVQDLINLDFERVIYLGSGGFYGLAHEAQLKILELTAGKIATMYESPLGFRHGPKSF
                     INEKTLIFLFASNDAYTRQYDVDLLNEVHGDGIAERIVALSADKLVGTEAANFVLAEG
                     GADLPDVFLTFPYILFAQTVSIMAAIKCNNLPDTPSPTGTVNRVVQGVIIHPLEK"
     gene            1429..3837
                     /locus_tag="U1404_001567"
     CDS             1429..3837
                     /locus_tag="U1404_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5348505.1"
                     /translation="METANKKFRYSIRKFKVGVGSVLIATCLLGAGVSTPTAFATTET
                     STATQVEAAQPTSETEPTVQITGTVSTENTNSESKVAPEVKEEAPVAEKAETATNSAE
                     QNVVSEPEKSEEPTPAPAALTSEAKEEVSENTEVKSAPLPQFQDILKELERDLEELKV
                     FRDYTGSDYSFQKGLWTYLLEDGQKLMSYVQTLEKDSPKIKENYDKLLDFKNHIRMER
                     LTRQVVPYLEKYSGNEFIRSEYREHLEQSEENGSYASQEGKVFEAYVDSAEQAFDRIV
                     NRVNELESKNLQKKVPDTAPKVAEKPKLDFKVQTRTTYQFLDFKTKEQEDPNLPLGEK
                     VERQKGERGEESETYQDVIVGDKIVASTLISKKRKDPVDHLIAKGTLVEKHPDTAPTA
                     PEKPKLDFTVKERVEREILDYMVEEQDDASLPLGQTKVLREGQKGELVKKYQDVIVEG
                     KVIESKLLSEDRKTPVNRLIAKNILVEKHPDTAPTAPEKPKLDFTVKERVEREILDYM
                     VEEQDDASLPLGQTKVLREGQKGELVKKYQDVIVEGNVIASNLLSEDRKAPVNRLIAK
                     GTLVEKTPDAPAPKAEEEVPAPTPMPETPMDKPKTDKVESDKQMPEAKQPEMEQPKAE
                     DMPKAEQPKAEDSAPKTAVPEVAPKTAEKPKLDFTTKERKVEEALPIKEEIRYDASLA
                     LGKSYLLQEGKAGKKVSVYQDVIVDGKIVATNLLSETVVEGQNRILVKGSLEMKKEEV
                     KSTPSVQSNLTLSHKGAPSANKATLPATGEQRNNLALVGLGLAGISLAVVATAINKKS
                     KDQI"
     gene            complement(4117..6384)
                     /locus_tag="U1404_001568"
     CDS             complement(4117..6384)
                     /locus_tag="U1404_001568"
                     /EC_number="3.4.14.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidyl-peptidase"
                     /protein_id="HEM5348506.1"
                     /translation="MRFNQFSFIKKETSVYLQELGALGFQLIPNVSSKTNLETFVRKC
                     HFLTANTDFALSNMIADWDTDLLTFFQSDRELTDLIFYQVAFQLLGFVPGVDYTDVMD
                     FVEKSNFPVIYGDTIDNLYQLLATRTKSGNTLIDQLVSDDLIPEDNHYHFFNGKSLAT
                     FSTKNLIREVVYVETPVDTAGTGQTDIIKLSILRPHFDGKIPAVITNSPYHQGVNDVA
                     SDKALHKMEGELAEKQVGTIQVKQASITKLDLDQRELPVSPSTEKLGHITSYSLNDYF
                     LARGFASLHVSGVGTLGSTGYMTSGDYQQVEGYKAVIDWLNGRTKAYTDHTRSIEVKA
                     DWANGKVATTGLSYLGTMSNALATTGVDGLEVVIAEAGISSWYDYYRENGLVTSPGGY
                     PGEDLDSLTALTYSKSLQAGDFLRSKEAYEKGLAAERAALDRTSGDYNQYWQDRNYLL
                     QADKVKCEVVFTHGSQDWNVKPIHVWNMFHALPSHVKKHLFFHNGAHVYMNNWQSIDF
                     RESMNALLSQKLLGYENNYQLPTVIWQDNSGEQTWTTLDTFGGENEAVLPLGTGSHTI
                     ANQYAQEDFDRYGKSYPAFHQDLYAGKGNQVSIDLPVTEDLLLNGQVTLKLRVASSVA
                     KGLLSAQLLDKGNKKRLAPIPAPKARLSLDNGRYHAQENLLELPYVDMPQRLVTKGFM
                     NLQNRTDLMTVEEVVPGQWMNLTWKLQPTIYQLKKGDVLELILYTTDFECTVRDNSQW
                     QIHLDLSQSQLILPH"
BASE COUNT         1971 a         1348 c         1477 g         1628 t
ORIGIN      
        1 ataagttcta gtcggcaata tcggatataa atttgacata ttaatctatt ttaaattgac
       61 tttgaggggt aaattcgcta taatataaga aaaaaactgg ttataaccag aaatcacgga
      121 ggaagagcta tgttccgttt agcaaaagaa gaacttgaaa agctgggagc tatgattacg
      181 gcgaccgaaa tttaccaaca gccaggctta tggaaggaag cgcatcaact ctattttgac
      241 caattggaaa aaatcgagag ttttctaaaa tcaatcaagg aaaaacatga ctttgttcac
      301 gttgttttta caggtgcagg gacttctgac tttgttgggc aaagtattgc caactacctc
      361 aaccaagtca atgacttgaa acacattcgt ttttctgcca ttggtacagt ggagctggtt
      421 agtcgtccac atgactatct acaagctgat cttccaacca tcctggtgtc ctttgcccgt
      481 tcaggcaatt caccagaaag tgtggcagca gttgaagtcg ccaagcaatt ggtagataaa
      541 ttgtatcaag tgaccattac ctgtgcacca gaaggcaagc tggcactagc ggctgaagga
      601 gatgttgaaa atctcctact cttgcaacca gctggttcaa acgataaggg ctttgccatg
      661 acaggttctt acagctgtat ggctctgaca gccctcctcg tcttctcgcc agccagtcaa
      721 gaagaaaaag ctgcttgggt tgagatcatt gcccgtctgg gtcaagatgt tttggaccgt
      781 gaagactacg tgcaagactt gattaatctt gattttgagc gagtgattta cctcggttca
      841 ggtggtttct atggtcttgc ccacgaagct cagttgaaaa ttctggaatt gacagcaggt
      901 aagattgcga ccatgtacga gtcaccactc ggtttccgtc atggaccaaa atccttcatc
      961 aatgaaaaga ccttgatttt cctctttgcc tcaaacgatg cctacactcg tcagtatgat
     1021 gtggacttgc ttaatgaagt tcatggtgat ggcatagcag agcggatagt ggcattgtcg
     1081 gctgataagt tagtcggtac agaagcagcc aactttgtct tggcagaagg cggagcagat
     1141 ctgccagatg tcttcctaac cttcccttac atcctctttg cccaaacggt atccatcatg
     1201 gcagccatta agtgcaacaa cttgccagat acaccatcac caacaggcac cgtcaaccgt
     1261 gtggtgcaag gtgttatcat ccatccttta gaaaaatagg cagatgcatt caacgatgaa
     1321 gaaacggagc tattcagtag agttttaaca cataaaaaac acatctagtc actcgaatat
     1381 cgtggtataa tgattctata taataaaata taattaggaa tgatagaaat ggaaactgca
     1441 aataaaaaat tcagatatag tattcgtaaa tttaaagtcg gcgtaggctc ggtgctgatt
     1501 gctacttgct tacttggtgc gggagtctcg acaccaaccg cttttgcgac gacagagact
     1561 tcaacagcta ctcaagttga agcagctcag ccaacgagtg aaacagagcc aacagtccag
     1621 attactggaa cagtaagtac agagaataca aattctgaat caaaagttgc gccagaagtt
     1681 aaggaagaag cgccagttgc tgaaaaagcc gaaacagcaa cgaactctgc agaacaaaat
     1741 gtagtctctg aacctgaaaa atcagaagaa ccaactcctg ctccagcagc cctcacaagc
     1801 gaagctaagg aagaagtatc agagaatacc gaagttaagt ctgctcccct tccacaattt
     1861 caggatattc taaaagagtt agaacgagat ttggaagaat taaaggtatt tagagactac
     1921 actggctctg attattcatt tcaaaaagga ctatggacat accttttaga agacgggcaa
     1981 aaactaatga gttatgtcca aacccttgag aaagatagtc ctaaaatcaa agaaaattat
     2041 gataaattac tcgactttaa aaaccatatc aggatggagc gtttgacacg tcaagttgtt
     2101 ccatatcttg aaaagtactc tggtaatgag tttattagaa gtgaatacag agagcactta
     2161 gaacaatcag aagaaaatgg tagttatgct agtcaggaag gaaaagtttt tgaagcgtat
     2221 gttgatagtg cagaacaagc atttgataga attgtaaaca gagtcaacga gctagagagc
     2281 aagaacctcc aaaagaaagt tcctgataca gcgcctaaag tagccgaaaa accaaaacta
     2341 gattttaaag ttcaaacacg aacaacatat caatttttag atttcaaaac gaaagagcaa
     2401 gaagatccaa acttgccact tggtgagaaa gtggaacgac aaaaaggtga gagaggcgaa
     2461 gagtctgaga cttaccaaga tgtgattgtt ggggataaaa ttgttgcaag taccctcatt
     2521 tccaaaaaac gtaaagatcc agttgatcat ctgattgcta aaggtacttt ggtagagaaa
     2581 catcccgata cagcaccgac agctcctgaa aaaccaaaat tggactttac tgttaaagaa
     2641 cgagtagagc gagaaatttt ggattatatg gttgaagaac aagatgatgc tagtttgcca
     2701 cttggtcaga caaaggttct tcgcgaaggt caaaaaggtg aattggttaa gaaataccaa
     2761 gatgtgattg ttgaaggtaa agtcattgaa agtaaacttc tttcagaaga ccgtaagacc
     2821 ccagttaacc gtctgattgc aaaaaacatt ttagtagaga aacatcctga tacagcaccg
     2881 acagctcctg aaaaacctaa attagacttt accgttaaag aacgagtaga gcgagaaatt
     2941 ttagattata tggttgaaga acaagatgat gctagtttgc cactcggtca aacaaaggta
     3001 cttcgtgaag gtcagaaagg agaattggtt aagaaatacc aagatgtgat tgttgaaggg
     3061 aatgtcatag caagtaatct tctttcagaa gaccgtaaag ccccagtcaa ccgtctgatt
     3121 gcaaaaggca ctttagtgga aaaaacgcca gatgctccag cgccgaaagc agaggaagaa
     3181 gttccagccc caactccaat gccagaaact ccaatggaca aaccgaaaac tgataaagta
     3241 gagtctgaca aacagatgcc agaggctaag caaccagaaa tggagcaacc gaaagcagaa
     3301 gacatgccaa aggctgagca accaaaagcg gaagactctg cacctaagac agcagttcca
     3361 gaagtcgcac caaaaacagc ggaaaaacca aagctagact tcacaacaaa agaacgcaag
     3421 gtagaagaag ctctccctat caaagaagaa atcagatatg atgcaagcct agcgcttggc
     3481 aaatcatacc ttcttcaaga aggaaaagca ggtaaaaaag tatctgttta tcaagatgtc
     3541 atagttgatg gtaaaattgt tgcaaccaac ctattgtcag agactgttgt tgaaggtcaa
     3601 aatcgtattc ttgtaaaagg tagcttggaa atgaagaaag aagaagtaaa atcaactcct
     3661 tcagtacaat caaatctgac actgagtcat aagggcgcac cttctgcaaa caaagcaacc
     3721 ctacctgcaa caggtgaaca acgcaataac ctagccttag taggccttgg tttagctgga
     3781 attagcttgg cagtagtcgc tacagctata aacaaaaaat ctaaagatca aatctaaacc
     3841 attatgaaat atcaataaag aggcagggcg gaaacgccca gcctcttttt agaactgaaa
     3901 atcaatatta tactcttcga aactcaaaat cagacgttgt tgacttgatt tgatgagtgt
     3961 caagctccag tggagcttga cagcctgcta ccataaaata agaaagtagc aggggtatat
     4021 ctgctcttgg agaaacgaac ttcgttcact ctatctccaa ccttcaaagg tttcccaaac
     4081 ctttgaaact agtctgattt tgattttcat tgagtattag tgcggtaaaa ttaactgtga
     4141 ttgacttaaa tcaaggtgga tttgccattg agaattatcc cgaacagtac actcaaagtc
     4201 ggttgtatag agaatcaact ccaagacatc gccttttttc agctgataaa tggtcggctg
     4261 cagtttccag gtcagattca tccactgtcc aggcaccact tcctcgacag tcatcaggtc
     4321 ggtgcggttt tgcaggttca taaagccctt ggttaccaag cgttgtggca tatccacata
     4381 aggcaactcc agcagatttt cttgggcatg gtaacgaccg ttgtctagac tcaatcttgc
     4441 tttaggcgca gggattgggg ctaggcgttt tttatttccc ttgtccaata gctgagcaga
     4501 taagagacct ttagctacac tagaagcaac acggagtttc agcgtgacct gcccgttaag
     4561 caagaggtcc tctgttacag gcaggtcaat gctgacttgg ttgcccttgc ctgcatagag
     4621 gtcttggtgg aaggcagggt aggatttgcc gtagcggtca aaatcttctt gggcatactg
     4681 attggcaatg gtatggcttc cagtacctag tggcaagaca gcctcgtttt caccgccaaa
     4741 ggtgtccaag gtcgtccaag tttgctcacc gctgttgtcc tgccagatga cagttggtag
     4801 ttgatagtta ttctcgtagc ctagcaattt ctggctgagt aaggcattca tggactcgcg
     4861 gaagtcgatg gattgccagt tgttcatata aacgtgggca ccgttgtgga agaagaggtg
     4921 ctttttgacg tgacttggca gggcatggaa catattccag acgtggattg gcttgacatt
     4981 ccagtcctgt gagccatggg taaatacgac ctcgcacttg accttgtcag cctggagcag
     5041 gtagttgcgg tcctgccagt attggttgta gtcaccgctg gtgcggtcta gggcagctcg
     5101 ttcggcagcc aggccttttt cgtaggcttc tttgctgcgg aggaaatccc ctgcttgcag
     5161 acttttcgag taggtcaggg cagtcaagct gtccaggtcc tcgcccggat agccgccagg
     5221 gctggtcacc agcccgtttt cacggtagta gtcataccaa gaggaaatcc ctgcttctgc
     5281 gatgacaact tccaaaccgt ccacgccagt tgttgccaag gcattggaca tggtgccgag
     5341 gtaagacagt cccgtcgtcg ccaccttacc attggcccaa tcggccttga cctcaatcga
     5401 gcgggtgtgg tctgtgtagg ccttggtgcg accgttcagc cagtcaatca ccgctttata
     5461 gccctccacc tgttggtagt cgccagatgt catgtagccc gtcgagccca gcgtaccgac
     5521 accagacaca tggaggctgg cgaaaccacg agcaagaaaa tagtcattga gggagtatga
     5581 agtgatgtgg cccagttttt cggtggaagg gctgacaggg agctcgcgct ggtccaagtc
     5641 taacttggtg atgctggcct gcttgacctg aatggtacca acttgttttt cagccagttc
     5701 cccttccatc ttatgcaggg ccttgtcgct ggctacatcg ttaactccct gatgataagg
     5761 actgtttgta atcaccgcag gaatttttcc gtcaaagtgc ggacggagaa tggacagctt
     5821 aataatgtct gtctgcccag tcccagctgt atcgacaggc gtttcgacat agaccacctc
     5881 acgaataagg tttttggttg aaaaggttgc tagtgactta ccgttgaaga agtggtagtg
     5941 attgtcctct ggaatcaggt cgtcgctgac cagctggtca atcaaggtgt ttccagactt
     6001 ggtacgagta gccagcagtt gatagaggtt gtcaatcgta tctccataga tgacagggaa
     6061 attgcttttc tccacgaaat ccatgacatc tgtataatcc acaccaggca cgaagcctag
     6121 caactgaaag gccacttgat agaaaatcag gtctgtcaac tcacggtcag actggaagaa
     6181 ggtcagcagg tctgtgtccc aatctgcgat catgtttgac agggcaaagt cggtgtttgc
     6241 tgtcaggaaa tggcactttc tgacaaaggt ttctaaattt gtcttactac ttacattagg
     6301 aatcagttga aatcctagag caccaagctc ttgcaagtag acggaggtct ctttttttat
     6361 aaaagaaaat tgattaaagc gcataaattc tcctcttttt taggataata gtctataata
     6421 gcta
//
LOCUS       DASGCC010000108         6285 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.108, whole genome shotgun sequence.
ACCESSION   DASGCC010000108 DASGCC010000000
VERSION     DASGCC010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6285
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.108"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            47..226
                     /locus_tag="U1404_001569"
     CDS             47..226
                     /locus_tag="U1404_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348507.1"
                     /translation="MKIKSSLGNEAEDRTGVHQGKLTTDNFDFRRVLVVFYTTHSRFK
                     TTKNQPWPADFLGDL"
     gene            346..813
                     /locus_tag="U1404_001570"
     CDS             346..813
                     /locus_tag="U1404_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348508.1"
                     /translation="MTIRKARQSDISVLNELLQDILQVHHQVRPDIFKSAGQKFSEAE
                     LVALLENPDKPIFVFELEGQVVGHLFCELSTTTGDVLEPVKTLFIDDLCVANSARGQK
                     IGEQLYEFALSYAKEQGCHNLTLDVWADNAGAVRFYERQGMKPQKFRMEQIIN"
     gene            complement(835..2094)
                     /locus_tag="U1404_001571"
     CDS             complement(835..2094)
                     /locus_tag="U1404_001571"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEM5348509.1"
                     /translation="MSTFSGFYKKSRQERIDILRQNRSLSEDSLDILYKDENLPEAIA
                     GKMAENHLGTFSLPFSVLPELLVDGQTYSVPMVTEEPSVVAAASFGAKIIAKSGGFTT
                     TIHNRIMIGQVALYDISDHSRATQAILDHKESILETANQAHPSIVKRGGGARELTVES
                     KDEFLIVYLQVDVQEAMGANILNNMLEAIKDDLEELSKGQALMGILSNYATESLVTAQ
                     CHIAISSLATSSAIAQETAQKIALASKLAQVDPYRAATHNKGIFNGIDAVVIATGNDW
                     RAVEAGAHAYASRDGQYKGLSTWSIDGEHLVGSITLPLPIASVGGSIGLNPKVAVAFD
                     LLQQPKARQLASIIASVGLCQNFAALRALVTSGIQAGHMKLHAKSLALLAGAEEHEVD
                     QLAQLLRKEKHSNLETAQNLLAKMREH"
     gene            complement(2355..3509)
                     /locus_tag="U1404_001572"
     CDS             complement(2355..3509)
                     /locus_tag="U1404_001572"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEM5348510.1"
                     /translation="MNIGIDKIGFAAPDYVLDLADLAQARNVDPNKFKIGLLQSEMAV
                     APVTQDIISLGAKAAEAILTEEDKQTIDMVIVGTESSVDQSKAAAVTIHGLLGIQPFA
                     RSIEMKEACYGATAGLSLAKSHIAQFPESKVLVIASDIAKYGVASGGEPTQGAGAVAM
                     LVTANPQILVLNNDNVCQTRDIYDFWRPNYDKYPRVDGKFSTEQYTDCLTTTFDYYQQ
                     KTGKTLNDFAAMCLHIPFSKQGLKGLQAIAQDEETLSRLTERFQEAIVYNKVVGNIYT
                     GSIFLSLLSLLENSRALETGDQILFYSYGSGAVCEIFSGQLVEDYRDHLQENRLEQLN
                     QRTKLSVKEYEQVFFEEITLDETGSSLNLPEDQSPFALIKVDNHKRIYRK"
     gene            complement(3538..4722)
                     /locus_tag="U1404_001573"
     CDS             complement(3538..4722)
                     /locus_tag="U1404_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEM5348511.1"
                     /translation="MKKVAIVSAYRSAIGSFGGSLKDIEIADLGAQVLETALANKNIP
                     ADSVDEVIFGNVLSAGQGQNIARQIAIRAGIPQTASAYAVNKVCGSGLKSVLLAAQSI
                     MLGDNDVVVAGGIEIMSQAPYLSKTSRFGSKFGHISLEDSMLTDGLTDAFNDYHMGIT
                     AENVAERYHVSRAEQDAFTYSSQEKAAKAIAEGRFVDEIVPIRLKNRKGETIFATDEY
                     PRLTPIEKLATLRPSFKKEGTVTAANASGINDGCAVLVLMSDEKASELNIQPLAYIEA
                     YATSGLDPALMGLGPITASQKALQKLNKTVEDIDLFELNEAFAAQSIPVVKQLGIDPA
                     KVNVNGGAIALGHPIGASGSRILVTLIHELIKQEKELGLCSLCIGGGQGISLIVSNAQ
                     TN"
     gene            4948..5640
                     /locus_tag="U1404_001574"
     CDS             4948..5640
                     /locus_tag="U1404_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HEM5348512.1"
                     /translation="MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIK
                     EAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGLNKAEAA
                     AEFGDEQVHIWRRSYDTLPPEMAKDHEHSAHTDRRYAHLDDSVIPDAENLKVTLERAL
                     PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFELDE
                     NLNIVKEYYLEA"
     gene            5746..6129
                     /locus_tag="U1404_001575"
     CDS             5746..6129
                     /locus_tag="U1404_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5348513.1"
                     /translation="MASKKMLHACLRVENLEASQKFYEEAFGFKETRRKDYPEHKFTL
                     VYLALEGDGFEIELTYNYDHGAYIVGDGFSHLALSSDDLEGDNAKHKELGYPTTDIKS
                     LPGSPGRYYFVTAPDGYRVEVIRAD"
BASE COUNT         1798 a         1228 c         1425 g         1834 t
ORIGIN      
        1 ttttttcttg tttaaggggc aaataagggg caaaacttta tactcaatga aaatcaaaag
       61 tagcctagga aacgaagccg aagatagaac tggagttcat caaggcaagt tgacaacgga
      121 taattttgat tttcgaagag tattagtagt tttctacact acacattctc gttttaagac
      181 aacaaaaaac cagccttggc cagctgattt tttaggagat ttatgaaaaa ttttaggata
      241 cacctatagt atactcgaat tttcaaattc ttcatcggtc tgtagaccta ttttgttaaa
      301 aaatgaacat gtgctataat aataaaaact caaaaggaga gtattatgac aatccgtaaa
      361 gctagacagt ctgatatttc ggtattaaat gaattgcttc aagatatttt acaggtgcat
      421 caccaggtac gaccagatat ttttaaaagt gcaggtcaaa aattttctga ggctgaatta
      481 gtagcacttt tggaaaatcc agataagcct atttttgtct ttgagttaga gggacaagtg
      541 gttgggcatc ttttttgtga attatctacc acaacaggcg atgttttaga accagttaaa
      601 accttgttta ttgatgattt gtgtgtagcc aattcggcgc gtggtcaaaa aattggtgag
      661 caactgtatg aatttgctct ttcctatgct aaggagcagg gttgccacaa tcttaccttg
      721 gatgtatggg ctgacaatgc aggagctgtc cgtttttatg aacgccaagg aatgaaacca
      781 caaaagttcc gtatggagca aataataaat taaaaaagag ggagtccctc ttttttaatg
      841 ttctctcatt tttgctaata agttttgagc agtttctagg ttgctgtgct tttctttccg
      901 caggagttgg gctagttgat ctacttcatg ctcctcggcg ccagcaagta gcgctaggga
      961 ttttgcgtgg agcttcatgt gaccagcctg aatccctgaa gtaacaagag cacgcagggc
     1021 agcaaagttc tgacagagac cgacagaagc gatgatagaa gctaattggc gtgcctttgg
     1081 ttgttggaga aggtcaaaag caactgctac ctttggattg agcccgatag agccaccgac
     1141 ggaggcaatt ggaagaggta gggtgatgga gccgaccaag tgctcgccat caatggacca
     1201 agtagaaagc cccttgtatt gcccatcacg gctagcataa gcatgggccc cggcttcgac
     1261 tgcccgccag tcatttcctg tagcgataac gacagcatct ataccattaa aaatcccctt
     1321 gttatgtgtc gcagcacgat aagggtccac ttgtgctagt ttgcttgcca gggctatttt
     1381 ttgagcagtt tcttgagcaa tggcagagct ggtagccaga ctagagatgg caatatggca
     1441 ttgggcggta accagtgact ccgttgcata gttggagagg attcccatca aagcctgtcc
     1501 cttgctgagc tcttctaagt catccttaat agcttctaac atgttattga ggatattggc
     1561 tcccatggct tcttgtacat caacctgaag atagacaatc aaaaactcat ccttactctc
     1621 aacagtcaat tctcttgcac cgccccctcg tttgacaatg gaagggtgtg cttgattggc
     1681 agtttctaaa atactctcct tatggtcaag aatcgcctgt gtcgctctgc tatggtccga
     1741 aatatcgtag agagcaactt gtccaatcat gatacggttg tgaatagtcg ttgtaaaacc
     1801 gccagattta gcgatgattt tggctccgaa agatgcagct gcaaccacag aaggttcttc
     1861 agtaaccatc ggtacagagt aagtttgtcc atccactaga agttctggaa gtacagaaaa
     1921 aggtaaggaa aacgttccta gatgattttc tgccatcttt cccgcaattg cttctggcag
     1981 gttttcgtct ttgtatagaa tgtctaagct atcttcggat agggaacgat tctgacggag
     2041 aatatcaatg cgctcttggc gtgatttttt ataaaatccg gaaaaagttg acataggttc
     2101 ctctttctat aggaaagcgc cccttggtga gagccaaagg gcgccgtttt ggggagcggg
     2161 aaagaacttg actgatagaa aagagttcgt cttcccgccc ccgcacagtt gattaggtca
     2221 gatttagagt gtggtaacac gaataaatct gccaatcaac cactgcgctg agatgttgac
     2281 gctaactgtg aaaagtgtgc tggaaattcg atcagcctat cattcattat tccaatgaat
     2341 gataggtaaa atgcttattt acgatagata cgtttgtgat tgtccacttt gataagggca
     2401 aagggacttt ggtcttctgg taggttaagg gatgaaccgg tttcatcaag ggtaatttct
     2461 tcaaagaaga cttgttcata ttccttaacg ctgagttttg tacgctgatt gagttgttct
     2521 aaacgatttt cttgtaagtg gtcgcgataa tcttcaacga gttgaccgct gaaaatttca
     2581 cagacagcgc cgctaccata gctataaaag aggatttgat cccctgtctc taacgctctg
     2641 ctattttcca aaagggaaag aagagagagg aagatagagc cagtgtagat gttgccgacg
     2701 actttattat agacgatagc ttcctggaaa cgttctgtca agcgactaag agtttcttca
     2761 tcctgagcaa tagcttgcaa tcctttaaga ccttgtttgg agaaaggaat atgtaagcac
     2821 atggcagcaa aatcgttgag ggttttgcct gttttttgtt gatagtagtc gaaagttgtc
     2881 gtcaagcaat cggtgtactg ttcagttgaa aatttaccat caacacgtgg atatttgtcg
     2941 tagttaggac gccagaagtc gtagatgtca cgtgtctggc agacattatc attgttgagg
     3001 accaaaattt gtgggtttgc ggttaccaac atggcaactg ccccagcacc ttgggtaggt
     3061 tcaccgccag aagcgactcc atactttgca atatcactag caatgactag gacttttgat
     3121 tctgggaatt gagcgatatg gcttttggca agacttagtc cagccgttgc accgtaacaa
     3181 gcctccttca tctcgatgga gcgagcgaag ggctgaatac cgagtaatcc atgaatggtg
     3241 acggcggcag ccttactttg atctacgcta gattctgtgc cgacaataac catgtcaatg
     3301 gtttgtttat cttcttctgt cagaatggct tcggcagcct ttgccccaag actgataata
     3361 tcttgagtga caggagctac agccatttca gactgaagaa gaccaatctt aaatttattt
     3421 gggtccacat tgcgggcttg ggctaaatca gccaaatcta aaacataatc gggtgccgca
     3481 aatccgattt tatcaatacc gatgttcata atatatcctt tgtgtacaaa tgataggtta
     3541 atttgtttgc gcattggaaa cgattaggga gatgccttga ccgcctccga tacaaagtga
     3601 gcaaagacca agctcttttt cttgcttgat taattcgtga atcagagtga ctaggattcg
     3661 actaccacta gctccgattg gatgtccaag ggctatagca ccaccattga cattgacttt
     3721 tgcaggatca atgccgagtt gtttgacaac tggaattgat tgggctgcga atgcttcatt
     3781 gagttcgaat agatcgatat cctcgactgt tttattcagt ttttgtagcg ctttttggct
     3841 agcagtaata ggtccaagcc ccatcaatgc aggatctaaa ccgcttgttg cataggcctc
     3901 aatataggcg agtggctgga tatttagctc actggctttt tcatcagaca tgagtaccaa
     3961 gacagcacag ccgtcgttga tgccagaagc attggctgcg gtgacggttc cttccttttt
     4021 aaaagatggc cgaagtgttg ccaatttttc aattggcgtc agacgagggt actcatctgt
     4081 ggcaaaaata gtttcgcctt tccgattttt taatctaata ggaacaattt cgtcaacaaa
     4141 tcttccctca gcaatagctt ttgcagcctt ctcttggcta ctgtatgtaa aagcatcttg
     4201 ctctgcgcga ctgacatgat agcgttcagc aacattttct gcagtaatgc ccatgtgata
     4261 gtcgttgaag gcatctgtca aaccatctgt taacatggaa tcttccagac taatatgacc
     4321 aaatttacta ccaaaccggc tagttttgga tagataaggt gcctggctca taatttcaat
     4381 gcctccagcc acaactacat cattgtcacc tagcatgatt gactgggcag ctaggaggac
     4441 tgatttgaga ccggaaccac agactttatt gactgcatag gcagaggctg tctgaggaat
     4501 gcctgcacga atagcaattt gacgtgcaat attttgtcct tgtcctgctg aaagaacatt
     4561 tccgaagata acttcatcaa cgctgtctgc agggatgttt ttattagcta aggctgtttc
     4621 gaggacttgc gcccctaaat cagcgatttc aatatctttc agactacctc cgaaactgcc
     4681 gatggcagaa cgataggcag acacgatagc tacttttttc atgataactc ctatagtggt
     4741 atcgttttga actgtcgtgt tcagccttac tattatacca ttattttgta ttttttctaa
     4801 gaagaaagat aggtctagag actgaattta catgaaagag taatgaaagc gtacacagat
     4861 tgtggaaagg ctggcatttt tttacctttt cgtgtaaaat agagaagtat aagaggggaa
     4921 cctcaaaatt taaaggagaa tccataaatg gtaaaattgg tttttgctcg ccatggtgag
     4981 tctgaatgga acaaagctaa ccttttcact ggttgggctg atgttgattt gtctgaaaaa
     5041 ggtacacaac aagcaatcga tgcaggtaaa ttgatcaaag aagcaggtat cgaatttgac
     5101 cttgctttca catctgtatt gaaacgtgct atcaagacta caaacttggc tcttgaagct
     5161 gcagatcaat tgtgggtacc agttgaaaaa tcatggcgtt tgaacgaacg tcactacggt
     5221 ggtttgactg gcttgaacaa agctgaagca gctgctgaat ttggtgatga acaagttcac
     5281 atctggcgtc gttcttatga tactttgcca ccagaaatgg ctaaagatca tgagcattca
     5341 gcacacactg accgtcgcta tgcacacctt gatgattcag ttattccaga tgcagaaaac
     5401 ttgaaagtaa cgcttgagcg tgcccttcca ttctgggaag ataaaattgc tccagcattg
     5461 aaagacggta aaaacgtatt cgtgggtgca cacggtaact caatccgtgc ccttgtaaaa
     5521 cacatcaaac aattgtctga tgacgaaatc atggatgtgg aaattccaaa cttcccacca
     5581 cttgtattcg aattggatga aaacttgaac attgtgaaag agtactactt ggaagcataa
     5641 ttcatttaag gcctgagttc gctcaggctt ttttagtttt gaatatcgga tttttcatag
     5701 agagtatggt atactggtgg tattaaatgg taggaggaat ttattatggc aagtaaaaaa
     5761 atgttgcacg cttgtttgcg tgttgagaac ttagaagcat ctcaaaaatt ttatgaagaa
     5821 gcatttggat ttaaggaaac ccgtcgtaag gactatccag agcacaagtt taccttggtt
     5881 tacttagcac ttgaaggaga tggctttgag attgaattga cctacaatta tgatcatggt
     5941 gcctatatcg taggcgacgg tttctcgcat ctagctcttt cttcagatga tttagaagga
     6001 gacaatgcta agcataagga gctgggctat ccaacgacag acatcaagag cttgccagga
     6061 agtccaggtc gttattattt tgtgacagct ccagatggct accgtgtgga agtcattcgt
     6121 gcagattaat ttagaaaaga ttgcctaggc agtctttttc ttttcaaaaa aatcagaaaa
     6181 tggcagaagg gagggattag gaagcaaatc aattatttat acttaatgaa aatcaaaagt
     6241 agcctagaaa acgaagccga agatagaact ggagttcatc aaggc
//
LOCUS       DASGCC010000109         6180 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.109, whole genome shotgun sequence.
ACCESSION   DASGCC010000109 DASGCC010000000
VERSION     DASGCC010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6180
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.109"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..735
                     /locus_tag="U1404_001576"
     CDS             <1..735
                     /locus_tag="U1404_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019785287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II restriction endonuclease"
                     /protein_id="HEM5348514.1"
                     /translation="KDDIYNEALQLFNKQPNLLKAIPSLIASRDKTLDILSIDADDNM
                     GFDNLDFAKIDEDRIVDYTNFVEATGLLDFLQKKANRSLVDYVYGVEAGLDSNARKNR
                     SGTTMEGILERTVARVCKEYGLEFKAQATAPFIKDNWGIEVPVDKSERRFDVAVFSKD
                     KHKLWLIETNYYGGGGSKLKAVAGEFTELSQFITKSTDDVNFVWVTDGQGWKTAHLPL
                     AEAFGHITHVFNLDMLKQGYLHDLFR"
     gene            856..2118
                     /gene="purD"
                     /locus_tag="U1404_001577"
     CDS             856..2118
                     /gene="purD"
                     /locus_tag="U1404_001577"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEM5348515.1"
                     /translation="MKLLVVGSGGREHAIAKKLLESEQVEQVFVAPGNDGMTLDGIEL
                     INIGISEHSALINFAKENDIAWTFVGPDDALAAGIVDDFEQAGLKAFGPSRLAAELEW
                     SKDFAKQIMVKYGIPTAAFGTFSNFEEAKAYIEEQGASIVVKADGLALGKGVVVAETV
                     EQAVEAAREMLLDNKFGDSGARVVIEEFLAGEEFSLFALVNGDQFYILPTAQDHKRAF
                     DGDQGPNTGGMGAYAPVPHLPQSVVDTAVDTIVKPILEGMITEGRSYLGVLYAGLILT
                     DQGPKVIEFNARFGDPETQIILPRLTSDFAQNIDDILHKRPTQLTWLNSGVTLGVVVA
                     SNGYPLDYEKGVTLPAKTEGDITTYYAGARFAENSRALLSNGGRVYMLVTTADTVQDA
                     QEKIYSELKNQDTTGLFYRTDIGSKAVK"
     gene            2144..2632
                     /gene="purE"
                     /locus_tag="U1404_001578"
     CDS             2144..2632
                     /gene="purE"
                     /locus_tag="U1404_001578"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEM5348516.1"
                     /translation="MNIPISIIMGSSSDWKTMKKAADVLDKFGVAYEKKVVSAHRTPD
                     LMFRHAEEARGRGIKVIIAGAGGAAHLPGMVAAKTTLPVIGVPVQSRALSGVDSLYSI
                     VQMPGGVPVATMAIGEAGATNAALTALRILSIEDSGIADQLASFAIEQGKIAEAMSDE
                     LN"
     gene            2619..3704
                     /gene="purK"
                     /locus_tag="U1404_001579"
     CDS             2619..3704
                     /gene="purK"
                     /locus_tag="U1404_001579"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEM5348517.1"
                     /translation="MNSTKTIGIIGGGQLGQMMAISAIYMGHKVITLDPAADCPASKV
                     SEVIVAPYHDVAALKQLAERCDVLTYEFENVDADGLDAVIKDGQLPQGTDLLRISQNC
                     IFEKDFLAKKAGVQVAPYKVVTSSLDLEGLDLSKNYVLKTATGGYDGHGQKVIREAAD
                     LEAASQLANSTECVLEEFVNFDLEISVLVSGNGSDYTVFPVQENIHRNNILYKTIVPA
                     RISDELAEKAKTMALQIADKLHLAGTLCVEMFVAGQEILVNEIAPRPHNSGHYSIEAC
                     DFSQFDTHIRGILGEPLPPIRLLSPAVMINVLGQDMEAVQTFLQENPTAHAHFYGKLE
                     AKHNRKMGHVTVLTEDVEVGFRQDEIR"
     gene            3691..4614
                     /locus_tag="U1404_001580"
     CDS             3691..4614
                     /locus_tag="U1404_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4268 domain-containing protein"
                     /protein_id="HEM5348518.1"
                     /translation="MKLDRLKEVDVREIWKHEQYDFSEWLSRTENIELLSDEIGLTLT
                     EIDKEVFVGSYRCDLVAIDETTGIKVIIENQLELTDHDHLGKIITYASGLDAEVVIWI
                     VKKAREEHRSAIEWLNNNTTKNISFFLIEIHAYQIGSSMPAPKFVLVEKPNDFTKLAK
                     GNNHGGDLSKAQAERLYFWTQFNNVVATKNKPFNVRKATTDHWYDVAIGTSEAHISIT
                     LVNKSKSVGIEIYINNNKELFDKLSSHADEIHEELGFEMEWKRLDNRKVSRIIYYIKG
                     LDFENHDNYNDLIDEVINKVIILRDVVKKYI"
     gene            4649..5941
                     /gene="purB"
                     /locus_tag="U1404_001581"
     CDS             4649..5941
                     /gene="purB"
                     /locus_tag="U1404_001581"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEM5348519.1"
                     /translation="MIERYTRPEMGNIWSEENKYKAWLEVEILADEAWAELGEIPKED
                     VALIREKATFDIDRILEIEEETRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTAY
                     GYLYKQANDIIRRDLENFTNIIADKAREHKYTIMMGRTHGVHAEPTTFGLKLATWYSE
                     MKRNMERFDVAAKGVEAGKISGAVGNFANIPPFVEEYVCGKLGIRPQEISTQVLPRDL
                     HAEYFSALALIATSIERMATEIRGLQKSEQREVEEYFAKGQKGSSAMPHKRNPIGSEN
                     MTGLARVVRGHLVTAFENVALWHERDISHSSAERIITPDTTILINYMLNRFGNIVKNL
                     TVFPENMKRNMESTFGLIYSQRVMLSLIEKGMTREEAYDLVQPKTAQSWDNQVDFKPL
                     LEADERVTAKLSQEEIDELFNPDYYAKRVDDIFERLGL"
BASE COUNT         1768 a         1268 c         1519 g         1625 t
ORIGIN      
        1 aaagatgata tatataacga agcgttgcaa ctttttaata aacaaccaaa tttattaaaa
       61 gctataccaa gtttgattgc aagtcgtgat aaaacactgg atattttatc aattgatgcc
      121 gatgataata tgggttttga taacttagat tttgcaaaaa ttgatgagga tagaattgta
      181 gattatacta actttgtgga agcaacagga ttattagatt ttttgcaaaa gaaagccaat
      241 cgttctttag tggactacgt ttatggagta gaggcgggac ttgacagtaa tgcacgtaaa
      301 aacagaagtg gtactaccat ggaggggatt ttagagcgaa cagtagcacg tgtctgtaaa
      361 gaatatggat tggagtttaa ggcacaagca acagctccat ttataaagga taattggggg
      421 attgaggtcc ctgttgataa gtcggaacgc cgatttgatg ttgctgtatt ttcgaaagat
      481 aaacataaat tatggttaat tgaaacgaat tattacggtg gaggcggtag caagttaaag
      541 gctgtagctg gagaatttac agaattaagt caattcatca caaaatctac agatgatgtt
      601 aattttgtgt gggtaactga tggtcaggga tggaagactg cccatcttcc tttagcagaa
      661 gcatttggtc atataaccca tgtcttcaat cttgacatgc taaaacaagg ttacttgcat
      721 gatttgttta gataatcaag tttgctcacc tcgtgtgagc tttttccatt cccgaacatt
      781 ctcctgtttt ttctattaaa atccgtctgt ttttgctata ctgtttatag aaaatccgtt
      841 tttgaggtgt aagaaatgaa acttttggtt gtcgggtctg gtggtcgtga acacgctatt
      901 gcaaagaagt tgttagagtc tgagcaggta gaacaggtct ttgttgctcc tggaaatgat
      961 ggaatgactt tagacggtat tgaattgatc aatatcggta tttccgaaca ttctgccctc
     1021 atcaactttg caaaggaaaa tgatattgca tggacttttg ttggtccaga tgatgctctg
     1081 gcagcaggta tcgttgatga ttttgaacag gctgggttaa aggcatttgg tccgagtcgt
     1141 cttgccgcgg agctagagtg gtcaaaagac tttgctaagc aaatcatggt caaatacggc
     1201 attccaacag cagcctttgg cacattttcc aacttcgaag aagccaaagc ctacatcgaa
     1261 gagcagggtg catcaatcgt ggtcaaggcg gacggattgg cactgggcaa gggtgtggtc
     1321 gtggcggaaa ccgtcgagca ggcggtcgaa gcggcacggg agatgctctt ggacaacaag
     1381 ttcggtgact caggtgcccg cgtggtcatc gaggagttct tggcgggcga ggagttttcc
     1441 ctctttgccc tggtcaacgg cgaccagttt tatatcctgc cgacagccca ggaccacaag
     1501 cgtgcctttg acggagacca ggggcccaac actggcggta tgggggctta cgctcctgtt
     1561 ccccacctgc ctcaaagcgt agtggacaca gcggttgaca ctattgtcaa gcctattctt
     1621 gagggcatga ttacggaagg gcggtcttat ctgggcgtgc tctatgctgg cttgattttg
     1681 accgaccaag gtcccaaggt catcgagttt aacgcccgtt ttggcgaccc agaaacccag
     1741 attattctgc ctcgtctgac ctctgacttt gctcagaaca tcgacgacat cctccacaaa
     1801 cgtccgacac agctgacctg gctgaatagc ggcgtgacgc tgggtgttgt cgtggcctca
     1861 aatggctatc ctttggatta cgaaaaaggc gtgaccttgc cagcgaagac cgagggtgac
     1921 atcacgacct attatgcagg ggctcgtttt gcggaaaata gcagagcact gctttcaaac
     1981 ggcggtcgag tttacatgct agtcaccaca gcagacaccg tccaagacgc ccaggaaaaa
     2041 atttactcgg agctgaaaaa tcaggatact acaggcctct tttatcgaac agatattgga
     2101 agcaaggccg ttaaataagg aacaaagaaa aggaaagaca agtatgaata ttccaatttc
     2161 catcatcatg ggctctagtt ccgactggaa aaccatgaaa aaagcagccg atgtgctgga
     2221 caaatttggc gtagcctatg aaaagaaagt ggtctctgcc caccgcaccc cagacctcat
     2281 gttccgtcat gccgaagagg cgcgtggtcg tggtattaag gttattatcg cgggagcggg
     2341 tggtgcggct catttgccag gtatggtagc agccaagacc accctgcctg ttatcggtgt
     2401 tcctgtccaa tcccgtgccc tcagcggtgt ggattcgctc tattctatcg tgcaaatgcc
     2461 aggcggcgta cctgtggcaa cgatggcaat tggagaagcg ggagcaacca atgcggcttt
     2521 gactgccctg cgtatcctgt ccatcgaaga tagcggtata gcagatcaac tggccagctt
     2581 tgctattgaa caaggaaaaa tcgcggaggc tatgagcgat gaactcaact aaaacaatcg
     2641 ggattattgg tggcggtcaa ctgggtcaga tgatggccat ttctgctatt tacatggggc
     2701 acaaggtcat cacgctggat ccagcagcgg actgcccagc ttccaaggtt agcgaggtta
     2761 tcgtcgctcc ctatcacgat gtggcggccc tcaaacagct ggcggagcgg tgcgatgtcc
     2821 tgacctacga gtttgaaaat gtcgatgccg acggactgga cgcggtcatc aaggacggcc
     2881 agctccctca ggggacagac ctcctccgta tttcccaaaa ctgcattttt gagaaggatt
     2941 ttttggcaaa aaaagctggc gtgcaagtcg ccccctacaa agtcgtcaca tctagcctag
     3001 acctagaagg tctggacctc agcaaaaact acgttttgaa gacagctact gggggctatg
     3061 atggacatgg tcagaaggtc attcgagaag ccgcggactt ggaggcggct agtcagttag
     3121 ccaactctac cgagtgtgtt ttggaagagt ttgtgaattt cgacctggaa atctccgtcc
     3181 ttgtgtctgg caatggctcc gactacaccg tctttcctgt gcaggaaaat atccaccgca
     3241 ataatattct ttacaagacc attgtgcctg ctcgtatttc tgatgaactt gctgaaaaag
     3301 ccaaaactat ggccctgcaa atcgcagaca aactccattt ggcaggcacc ctctgtgttg
     3361 agatgtttgt ggcagggcaa gaaattcttg tgaatgaaat cgctcctcgc ccgcacaatt
     3421 caggacatta ttcgattgaa gcctgtgatt tttcacagtt tgacacccat atccgaggca
     3481 ttttagggga gcccctgccc cctatccgcc tgctttctcc agctgttatg atcaatgtcc
     3541 tcggacaaga catggaagca gtccaaacct ttcttcaaga aaaccctacc gctcatgccc
     3601 acttttatgg taaactagaa gcaaagcaca atcgcaaaat gggacacgtg acggtgttga
     3661 cggaagacgt tgaggtggga tttagacaag atgaaattag ataggctaaa ggaagtagat
     3721 gttagagaaa tctggaaaca tgagcagtat gatttctcgg agtggctgtc taggacagag
     3781 aatatcgaat tactgagcga tgagatagga ctgactctta ccgagattga caaggaagtt
     3841 ttcgttggct catatagatg cgatttagtg gctattgatg aaacaacggg aataaaagtg
     3901 attatagaaa accaattaga attaacggat catgatcatc ttggtaaaat cataacctac
     3961 gcatcgggct tagatgctga ggttgtcatt tggattgtaa aaaaagctag agaagagcat
     4021 aggagtgcta tcgagtggct taacaataat acaacgaaaa atatatcttt tttcctaatt
     4081 gaaatccatg cttatcaaat aggtagttca atgcctgctc ctaaatttgt tcttgttgag
     4141 aaaccgaatg attttacaaa gctagctaaa ggaaataatc acggtggtga tttgagtaaa
     4201 gcacaggcgg aacgtttgta tttttggact caatttaata atgtagtggc aactaaaaat
     4261 aaaccgttca acgttagaaa agctactaca gaccactggt atgatgttgc tattggaaca
     4321 agtgaggctc atatttctat taccctagtc aataaatcaa aaagtgtagg gattgaaatc
     4381 tatataaaca ataataagga attatttgat aagctatcat cacatgctga tgaaatccac
     4441 gaagaacttg gatttgaaat ggaatggaag aggttagata atagaaaggt ttccaggatt
     4501 atatattata taaagggtct ggattttgag aaccatgaca attacaacga tttaattgac
     4561 gaagtaatta acaaagttat cattttgaga gatgtagtta aaaagtatat ctaaaaaaat
     4621 aaatagatag ggaaaaagga aacacaacat gatagaacgc tacacacgcc ctgaaatggg
     4681 caatatttgg agtgaagaga acaagtacaa ggcttggttg gaggtggaaa tcctcgctga
     4741 tgaggcttgg gctgagttgg gtgagattcc caaagaagat gtggccttga ttcgtgagaa
     4801 ggcgactttt gacatcgacc gcattttaga gattgaagag gaaacccgtc acgatgtggt
     4861 ggcttttacg cgtgcggttt cggaaagtct tggtgaggaa cgcaagtggg tccactacgg
     4921 tctgacttcg accgacgtgg tggatacggc ttacggctac ctctataagc aggccaacga
     4981 catcatccgt cgtgaccttg aaaactttac caacattatc gccgacaagg cgcgtgagca
     5041 caagtacacc attatgatgg gccggaccca cggtgtccat gcggagccaa cgacctttgg
     5101 tctgaagctc gcaacttggt acagcgaaat gaaacgcaac atggagcgtt ttgatgtggc
     5161 ggccaagggt gttgaagctg gtaaaatttc aggtgcggtt ggaaactttg ctaacattcc
     5221 tccatttgtg gaagagtatg tttgtggcaa attgggcatt cgtccgcagg aaatttctac
     5281 ccaggtcctt cctcgtgacc tccacgcaga atatttctca gccctagcct tgattgcaac
     5341 atctatcgag cgtatggcga cagaaatccg tgggctacaa aaatctgaac aacgcgaagt
     5401 cgaagagtat ttcgccaaag gccaaaaagg cagctctgct atgccccata aacgcaaccc
     5461 tatcggctct gaaaatatga ccggtctggc tcgtgtggtg cgtggtcact tggtgacggc
     5521 ttttgagaat gtggctctct ggcacgaacg cgatatttcc cactcgtcag cggagcggat
     5581 tatcacgccg gatacgacta tcctcatcaa ttatatgctc aaccgttttg gcaatatcgt
     5641 taagaacttg acggtcttcc ctgaaaatat gaaacgcaat atggagtcaa cctttggctt
     5701 gatttacagc cagcgtgtca tgctcagttt gattgaaaaa ggcatgaccc gtgaggaagc
     5761 ctatgatttg gtgcaaccaa aaactgcgca gtcatgggat aatcaagtgg acttcaagcc
     5821 ccttctcgaa gcggatgagc gtgtgactgc caaacttagc caggaagaaa tcgatgaact
     5881 cttcaaccca gactactatg ctaagcgggt tgatgacatc tttgaacgac ttggattata
     5941 aaaaatcaaa attctttgga ttttccagag aattttttta tttacttgcg aataagtagg
     6001 tgaaggggaa aacaagctcc ctccgctaga caatcattcg tgagtaaaaa taaaccattt
     6061 tttacaaaag tttacgaata gataagtgtg ggggaagcct gctcacaact tattcaaaac
     6121 aagtatcgtc atttagtttt tcttttatta cttcgttaac tcgccttgcc taactctagt
//
LOCUS       DASGCC010000110         6103 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.110, whole genome shotgun sequence.
ACCESSION   DASGCC010000110 DASGCC010000000
VERSION     DASGCC010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6103
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.110"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(17..706)
                     /locus_tag="U1404_001582"
     CDS             complement(17..706)
                     /locus_tag="U1404_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5348520.1"
                     /translation="MGKVIIGISGNEQEFPTKSGRTYVTVASELADGVRQAGGVPMVI
                     PMGTPDLAKDYINMIDKLILSGGQHVDPSLYGQERLIDSNDYLLERDAFELALIEEAL
                     RQGKPIFAVCRGMQLLNVALGGSLEQEVAHHWQEGIAGTSHRLQVKPKSRIGQLFTQG
                     SPINSFHQQRIKELAPGLVATGLDPRDGTIEAYESRGNQALFGIQWHSEFLYNDCKQH
                     RDLFQYLVDIF"
     gene            1086..3335
                     /gene="metE"
                     /locus_tag="U1404_001583"
     CDS             1086..3335
                     /gene="metE"
                     /locus_tag="U1404_001583"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM5348521.1"
                     /translation="MTTTIIGFPRIGEHRELKFITEKYFRNEIPQEELLEVAKDLRAK
                     HWNIVKEAGITEIPSNDFSHYDNVLDAAVLFNIVPKAVQNLDLTDLEKYFALARGYQG
                     EKGDVRARPMKKWFHTNYHYIVPAIEKDTEIKLAGHKIFDEFQEAKNLGITTRPVLIG
                     PFTLLQLTDFEEGLTATDFADSLVAAYGQVFEKLAELGAEKIQLDEPSLVKDLTAEEK
                     ALFLRIYQTLLADKKGLQVLIQTYFGDVRDIYTELTSLPVDAIGLDFVEGKETAALVA
                     TGFPANKTLYAGIVNGKNIWRNNYEKSLAVLDAIPAEHVVITTSCSLLHVPFTTANEE
                     FEPAILNHFAFAVEKLSELRDLDAIRNSQGEVALTANKELFALERVGRDAALADRLAG
                     LTDADYTRLPVFAEREAIQREKLNLPLLPTTTIGSFPQTKEVRSTRLAFRKGNISEEE
                     YDTFVKAQTDEWIAWQEEVDFDVLVHGEFERNDMVEYFGENLSGYLFSKNGWVQSYGM
                     RGVKPPIIWGDVTRLNPITVKWSSYAQSRTNKPVKGMLTGPVTILNWSFPREDISIKE
                     STLQIALAIKEEVLDLEAAGIKIIQIDEAALREKLPLRRSDWYSEYLDWAIPAFRLVH
                     STVAPETQIHTHMCYSEFTDIIPAIDNMDADVISFEASRSNLVILDELKAKNFQTQVG
                     PGVYDIHSPRVPAVDEIAHTIQAILAKVPKEKVWINPDCGLKTRGESETKASLIHLTQ
                     AAKTARKEL"
     gene            3339..4199
                     /gene="metF"
                     /locus_tag="U1404_001584"
     CDS             3339..4199
                     /gene="metF"
                     /locus_tag="U1404_001584"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEM5348522.1"
                     /translation="MIGQTPSLSFEIFPPKPEVGNEKIIQTLDEMQGLAPHFISVTCS
                     NNNLNVEETTVKLANHVRNELHIPTIAHLPAAYLTKEKVRSVLHSLDEIGVHQILALR
                     GDIIEGLPPKEDFQYATDLISFIKEEAPHFDIIGACYPEVHPESPNSVSDIKNLKKKV
                     DAGCSTLVTQLFFDNEAFYNFQEKCSLADIEVPIIAGIMPIINRNQALRLLKTCENIR
                     LPRKFKAILEKYEHNPESLRAAGLAYAVDQIVDLVTNDVAGIHLYTMNNAETARTIHQ
                     ATHSLFKHYS"
     gene            complement(4547..6007)
                     /locus_tag="U1404_001585"
     CDS             complement(4547..6007)
                     /locus_tag="U1404_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM5348523.1"
                     /translation="MDQFFKLKEHGTTVSTEIMAGLTTFFAMSYILFVNPSVLSVAGM
                     PTQAVFLATIIASAVSTLVMGLFANVPYALAPGMGLNAFFTYTVVIGLGFTWQEALAM
                     VFLCGLFNVFITVTKVRKGIIKAIPVSLQHAIGGGIGVFVAYLGFKNSNLITFLTSGS
                     DIITVNGVAPADATAETFSNGVFSVFAGGGVVPGISTFTDPSVLLTVFGLLLTAVLVI
                     KNVRGAILIGIIATTLAGIPAGVVDLSTIDFANNNIGTAFAELGTTFLAAFDGLSSLF
                     ADSSRLPLVLMTIFAFSLSDTFDTLGTFIGTGRKTGIFSEEDEKALENGTGFNSKMDK
                     ALFADAIGTSIGALFGTSNTTTYVESAAGISAGGRTGLTAVTTAVLFLLSILILPFIG
                     IVPNAATAPALIIVGVMMVSSFLDVDWSQFEDALPAFFAAFFMALCFSISYGIAAAFI
                     FYCLVKVSTGKAKEIHPILWGATALFILNFIILAIL"
BASE COUNT         1987 a         1358 c         1144 g         1614 t
ORIGIN      
        1 aagagggata cccctcttaa aatatatcta ctaaatactg aaacaggtct cgatgttgct
       61 tacaatcatt atacaaaaat tctgaatgcc attggatacc aaacaaagct tggttccctc
      121 tactttcata agcttctatc gtaccatctc taggatccaa acctgtcgcc accagtcctg
      181 gagccaattc tttgattcgt tgctgatgga aggaattaat agggctccct tgggtaaaca
      241 gttgaccgat tcgactttta ggtttcactt gtaaacgatg ggatgtcccc gcaataccct
      301 cttgccaatg atgagccact tcctgctcta aactaccacc tagagcaaca ttgagcaact
      361 gcataccacg gcaaacggca aaaataggtt ttccttgccg aagggcctct tcaatcaaag
      421 ctaactcaaa tgcatcccgt tccaagaggt aatcattact atcaatcaag cgctcttgcc
      481 cgtatagact ggggtctaca tgctgaccgc ctgataaaat caacttatca atcatgttga
      541 tatagtcctt ggctaagtca ggagttccca taggaataac cattggtaca ccacctgcct
      601 gacgcacacc atctgccaat tcactcgcaa cggttacata agttctacca gatttagttg
      661 gaaattcttg ctcgtttcct gaaattccaa tgataacttt tcccataaaa agcccctttc
      721 tttcattttt tcaattgtag catggctacc tagccctgtc taatatagaa gttttatggc
      781 ttgataaaaa ataactatca gaactaccta taaacaattg ctcataaaca agagtttgcc
      841 tttagcagtt tcatagataa aatctatacc acgcttaaga aaaaactata ctggagccag
      901 cataaaaaag tcaagcttga taaacaggct tttttcaagc ttttatatag aagaaatatc
      961 aaaaaagtag ctctctttca atctgttata gtcaaaagtt ataactccct ctaatttttt
     1021 acaattatac aagagtcgtt ttttctgtta ggataggggc atagaaatat tttggaggaa
     1081 aaaacatgac tactactatt atcggcttcc cacgtatcgg agaacaccgt gagttaaaat
     1141 ttatcactga aaaatacttt agaaatgaaa ttccacaaga agagcttttg gaagtagcta
     1201 aagacctacg tgctaagcac tggaatattg ttaaagaagc aggcattact gaaatcccaa
     1261 gcaacgactt ctcccactat gacaatgttt tggatgcagc tgttctcttc aacatcgtac
     1321 ctaaagcagt acagaacctt gacttgactg accttgaaaa atacttcgct cttgcacgtg
     1381 gttatcaagg agaaaaaggg gacgttcgtg ctagaccgat gaaaaaatgg ttccacacca
     1441 actaccacta tatcgttcca gctattgaaa aagatacaga aatcaaacta gccggtcata
     1501 agattttcga tgaattccaa gaagcaaaga acttgggcat cacaactcgt ccagttttga
     1561 ttggtccatt cacactctta caattaactg attttgaaga aggtttaact gctactgatt
     1621 tcgctgatag cttagttgca gcctacggac aagtctttga gaaattggca gagcttggtg
     1681 ctgaaaaaat ccagctggac gaaccgagct tggtcaagga tttgactgct gaagaaaaag
     1741 cccttttcct acgtatctac caaacactct tggcagataa gaaaggtttg caagttctca
     1801 tccaaaccta cttcggtgat gttcgtgata tttacacaga attgaccagc ctaccagttg
     1861 atgccatcgg tcttgacttt gtagaaggta aggaaactgc tgcacttgtt gcaactggtt
     1921 tcccagctaa caagaccctc tacgctggta tcgtcaacgg taaaaatatc tggcgcaaca
     1981 actacgaaaa gagcctggct gttttggatg ctattccagc tgaacatgtc gttataacaa
     2041 cttcttgctc ccttcttcat gtacctttca caacagcaaa tgaagaattt gaaccagcta
     2101 tcctcaacca ctttgctttt gcagttgaaa aactgagcga attgcgtgat ttggatgcca
     2161 tccgtaacag tcaaggcgaa gttgctctca cagctaacaa ggaactcttt gcccttgagc
     2221 gtgttggtcg tgatgcagcc cttgcagacc gtcttgcagg actgacagac gccgattata
     2281 cacgcctacc agtctttgca gagcgtgaag ccattcaacg cgagaagcta aacttaccac
     2341 ttcttccaac aaccactatc ggttccttcc ctcagaccaa ggaagtccgt agcacacgct
     2401 tggctttccg caaaggaaat atctcagaag aagaatacga tacatttgtt aaagctcaaa
     2461 cagacgaatg gattgcatgg caggaagaag ttgacttcga tgtcttggtt catggtgagt
     2521 ttgaacgaaa cgacatggta gaatacttcg gtgaaaacct ttctggttat ctcttcagta
     2581 agaacggatg ggtccaatca tatggtatgc gtggggtaaa accaccaatc atctgggggg
     2641 atgtgacgcg cttgaaccca atcactgtta aatggtcaag ctatgcacaa agccgtacaa
     2701 acaaaccagt taaaggtatg ttgacagggc cagtaaccat tctcaactgg tcattccctc
     2761 gtgaagatat ttctattaaa gaatcaactc ttcaaatcgc ccttgctatc aaggaagaag
     2821 ttcttgacct tgaagcagcg ggtatcaaga ttatccaaat tgacgaagca gctttacgtg
     2881 aaaaattacc acttcgtcgt agcgactggt acagtgaata tttggattgg gcgattccag
     2941 ccttccgatt agttcactca actgttgcac cagagacaca aattcacact cacatgtgct
     3001 atagcgaatt tactgacatc attcctgcca tcgacaatat ggatgcagac gttatctcct
     3061 ttgaagccag ccgttcaaat cttgttattc tagatgaact caaggctaaa aacttccaaa
     3121 ctcaggtagg tcctggtgtc tatgacatcc actctccacg tgtccctgcc gttgatgaaa
     3181 ttgcacacac cattcaagcc atccttgcta aagtaccgaa agaaaaagtt tggattaacc
     3241 cagactgcgg actcaagact cgtggcgaat cagaaacaaa agctagtctt atccacttga
     3301 ctcaagcagc taagacagcc agaaaggaac tctaatttat gattggtcaa accccaagtc
     3361 tctcatttga aatttttcct ccaaaaccag aagtaggcaa tgaaaagatt atccaaactc
     3421 tcgatgagat gcaaggtttg gcccctcatt ttatcagtgt tacatgcagc aataacaatt
     3481 tgaacgtaga agagactact gtcaagttgg ctaaccatgt tcgcaatgaa ttgcatattc
     3541 caactatcgc acatttgcca gctgcttact tgacaaaaga aaaggtccga tccgttcttc
     3601 attctctcga tgaaattggt gtacatcaga ttttagcact tcgtggcgat attattgaag
     3661 gtcttccccc taaagaggac ttccagtatg caactgactt gatttccttt atcaaggaag
     3721 aagccccaca ttttgacatt attggagcct gttatccaga agtacatcca gaatcaccaa
     3781 attctgtctc agacatcaaa aatttgaaaa agaaagttga tgccggttgc tcaaccttgg
     3841 taactcaact cttcttcgat aacgaagcat tttataactt tcaggagaaa tgttctctag
     3901 cagacatcga agtgcctatt atcgcaggta ttatgcctat catcaacagg aatcaggcac
     3961 ttcgtctctt gaaaacctgc gagaacattc gcttaccacg taaatttaaa gctatcctgg
     4021 aaaaatatga gcacaatcct gagtcacttc gtgcagcagg tctggcctat gctgtagatc
     4081 aaattgttga cttagtgacc aatgatgtgg ctggtatcca tctctacact atgaacaatg
     4141 ccgaaacggc ccgcaccatc catcaagcaa ctcattcgtt attcaaacat tatagttaga
     4201 aaactccccc tgaacccaag ctcaggggtt attctatacc ctgtgactcc caaagactac
     4261 atgataattt tttcacccca tcatgacatt aatccagcgg atgtctaggt atgagacatc
     4321 ttgcttacaa taacgaacag ccatttaaaa tacagtcaca aggagtaaaa atggcactaa
     4381 gaggagacag agaagcaacg aaatggaaaa ataaactcca tccgttttca aattacaacg
     4441 ttcaataccg catatgctga ataaatcaca ttgattccca tatattttaa tcataaataa
     4501 aaaaactgac cttcaaatga agatcagttc aaggataata aacagattac aagatggcta
     4561 gaatgatgaa attcagaata aatagagctg tggcacccca aaggattgga tgaatttctt
     4621 tagccttacc agttgaaact tttactaagc aatagaagat aaatgcggct gcaataccgt
     4681 atgagataga gaagcaaagc gccatgaaga aggcggcaaa gaaggctgga agagcgtctt
     4741 caaactggct ccaatcaaca tcaagaaagg atgaaaccat catgacaccg acgataatca
     4801 aggctggagc tgttgcagca tttggcacaa ttccaatgaa tggtaaaatc aaaattgata
     4861 gcaagaagag aacggcagtt gtaacagctg tcagaccagt acgaccacct gcagagatac
     4921 ctgcagccga ttcaacatat gtcgttgtat ttgaagtacc aaatagtgca ccgatagagg
     4981 taccaatcgc atctgcaaag agcgccttgt ccatcttaga gttaaagcct gtaccatttt
     5041 cgagagcttt ctcatcttct tctgagaaaa taccagtctt acgacctgta ccgataaagg
     5101 taccaagtgt gtcaaaggta tctgacaagc tgaatgcaaa gatagtcatc aaaacaagtg
     5161 gtagacggct tgagtcagca aagagcgaag atagaccatc aaaagccgct aagaaagttg
     5221 taccaagctc cgcaaaggct gtaccgatat tgttattcgc aaaatcgatt gtagacaggt
     5281 ccacaacacc tgctggaatt ccagctaaag tcgttgcaat aataccaatc aaaattgctc
     5341 cacgcacgtt cttaataacc agaacagctg tcaaaagaag accgaacact gtcaagagaa
     5401 cacttggatc agtaaaggtt gaaataccag gtacgacacc gccaccagca aaaacagaga
     5461 aaacaccgtt tgagaatgtt tcggctgttg catctgccgg agcaacacca tttacagtaa
     5521 taatatctga accagatgtc aagaaggtga ttaaattaga gtttttaaaa ccaagatagg
     5581 caacgaatac accgatacca ccaccgatgg catgttgtaa actaactgga atcgccttga
     5641 taataccctt acgaaccttt gtaactgtga taaaaacgtt aaacaaaccg cagaggaaaa
     5701 ccattgccaa agcttcttgc caagtaaaac caagaccaat aaccactgta taggtaaaga
     5761 aggcattcaa ccccatacct ggtgccaagg cgtaaggtac gttagcaaat aatcccataa
     5821 caagcgttga aactgcactg gcaattattg tagccaagaa aacagcctgt gttggcattc
     5881 cagcaacact taacacacta gggttaacaa acaagatata tgacatggca aagaaagtcg
     5941 taagtcctgc cataatttcc gtagaaacag tcgttccatg ttctttcaat ttaaaaaatt
     6001 gatccatttt tttcatttct ccttttaatt tacgaacaat aaaaacatta taatcaaaaa
     6061 acattataat ttcaagtttt ttaatcttga aagcgttatt tta
//
LOCUS       DASGCC010000111         6082 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.111, whole genome shotgun sequence.
ACCESSION   DASGCC010000111 DASGCC010000000
VERSION     DASGCC010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6082
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.111"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(17..568)
                     /locus_tag="U1404_001586"
     CDS             complement(17..568)
                     /locus_tag="U1404_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002268947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM5348524.1"
                     /translation="MTKALISIDYTIDFVADEGKLTAGKSAQAISERIAQVTQEAFEN
                     GDYIFFAIDGHEEGDEFHPEAQLFPSHNIIGTQGRDLYGPLADFYQKHKGHARVRWMD
                     KRHYSAFSGTDLDVRLRERGVDTVVLTGVLSDICVLHTAIDAYNKGYRIEVVSSAIAA
                     LTEENHQFALNHLRHVLGATIID"
     gene            complement(570..1358)
                     /gene="codY"
                     /locus_tag="U1404_001587"
     CDS             complement(570..1358)
                     /gene="codY"
                     /locus_tag="U1404_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HEM5348525.1"
                     /translation="MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSC
                     IINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYVKAVAQVYDTQVNLPVESELTAI
                     PVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
                     FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITR
                     SVIVNALRKLESAGIIESRSLGMKGTYLKVLIPAIFDEIKKRDY"
     gene            complement(1829..3043)
                     /locus_tag="U1404_001588"
     CDS             complement(1829..3043)
                     /locus_tag="U1404_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5348526.1"
                     /translation="MKQFNKSTKLDDVAYDIRGPVLEEAMRMRANGEQILRLNTGNPA
                     EFGFTAPDEVIRDLIHNARKSEGYSNSKGIFSARKAIMQYCQLKKFPNVDIEDIYLGN
                     GVSELIVMSMQGLLDNGDEVLVPMPDYPLWTAAVSLAGGKAVHYVCDEAAEWYPDLAD
                     MESKVTSRTKAIVLINPNNPTGALYPKEILKGIIDIARRHELIIFSDEIYDRMVFDGA
                     VHIPIATLAPDLFVVTMNGLSKSHRICGFRVGWMVLSGPKKHVKGYIEGLNMLSNMRL
                     CSNVLAQQVVQTSLGGYQSVDELLMPGGRLYEQREFITKAINDIPGLSAVKPKAGLYV
                     FPKIDREMYRVEDDEQFVLDFLKQEKVLLVHGRGFNWKDPDHFRIVYLPRVDELAEIQ
                     EKMSRFLRQYRR"
     gene            3198..3650
                     /locus_tag="U1404_001589"
     CDS             3198..3650
                     /locus_tag="U1404_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM5348527.1"
                     /translation="MTQSYKTILVAVDGSKGAELALHKAIHVALRNQARLIIAHVIDT
                     RALHNVVAFDASVYESLEREAELLLEEYKQEALNAGLTDVQICIEFGNPKTLLAIDIP
                     KETGADLMLLGATGLNAFERLLIGSSSEYIMRHATIDLLIVRDGEKSL"
     gene            complement(3666..4184)
                     /locus_tag="U1404_001590"
     CDS             complement(3666..4184)
                     /locus_tag="U1404_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5348528.1"
                     /translation="MFQSKDDNFNRVKDFHFLMDGETQELPSVYDGQTALHRAGFKVE
                     ELVEFLHAASESEVEFHDFIQQLHRDLDTAAAKVSGKRGFGVSMQDQVDALLDILYFT
                     YGSFVLMGVDPEPIFQIVHTANMGKTFPDGKAHFDPITHKILKPDDWEERFAPEEKIQ
                     EELKRQMKRLDS"
     gene            complement(4186..5031)
                     /locus_tag="U1404_001591"
     CDS             complement(4186..5031)
                     /locus_tag="U1404_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5348529.1"
                     /translation="MTIKAVFFDIDGTLLTDNRMVSSSTILAINALKEKGILVGLATG
                     RDPRFVLQYMASLGLDLAIAYNGQYIFSREEVIYSQSLEPKQIEQIMEYAQTHHKDLS
                     FGTAKGIFGSKIMSAGTGNFAYRVTRMIPESWAGIINFIFNRLVRWISPQQETNLKGF
                     LFQPIYQLMLLTTERETQSLEMLFPNLSFTRSSPYATDIISKGNSKLSGIVKVADRYG
                     FELDEVMVFGDSNNDFEMLNEIQHSVAMGNGTKKVKQAASFVTDTNNRDGIYKALIHF
                     GVIEG"
     gene            5101..6060
                     /locus_tag="U1404_001592"
     CDS             5101..6060
                     /locus_tag="U1404_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEM5348530.1"
                     /translation="MKKILVLHTGGTISMQANHQGEVASSKINPMTQIDSPLEEIQVT
                     SLDFLNVPSPHIRLEHMMTLYQKIKEEQMNFDGFVITHGTDTLEETAYFLDTMAIPEK
                     PIVLTGAMRSSNELGSDGIYNYRTALRVAADDKSADKGVLVVMNDEIHAAKYVTKTHT
                     TNVSTFQTPTHGPLGLVTKREILYFKTAEPRVRFDLSTVTGTVSIIKAYADMDSILLD
                     SLTASSISGLVIEALGAGNLPPTVLPAIKKLLDQKIPIILVSRCFNGIAEPVYAYQGG
                     GIQLEQDGILFVKELNAQKARLKLLIALNAGLEEQSLADYIQG"
BASE COUNT         1932 a         1453 c          993 g         1704 t
ORIGIN      
        1 gctccccact atactattag tcaataattg tcgcaccgag tacatgacgc aaatggttaa
       61 gagcaaactg atgattctcc tccgtcaatg cagcaatggc tgatgagacc acctcaatac
      121 gatacccctt attataagca tcaatagctg tatgaagaac acaaatatca gacaaaacac
      181 ccgtcaagac aaccgtatct acaccacgct ctcttagtcg aacatccaaa tccgtcccag
      241 aaaaagcaga ataatgacgt ttatccatcc aacgaacacg cgcatgccct ttatgttttt
      301 gataaaaatc tgctaaagga ccatacaaat cacgtccttg cgtcccaatg atattatgac
      361 ttgggaaaag ctgagcttca ggatgaaatt catccccctc ctcatgacca tcaatcgcaa
      421 agaaaatata gtctccattt tcgaaagctt cttgcgtaac ctgagcaatt cgttcagaaa
      481 tagcctgagc tgattttcca gcagtcaact ttccttcatc tgccacaaaa tctattgtat
      541 aatcaatcga aatcaatgct tttgtcattt tagtagtcac gtttcttaat ttcatcaaaa
      601 atagctggga tgagaacttt caaataagtc cccttcattc ccaaagaacg actttcaata
      661 atccctgcac tctccaactt acgcagtgca ttcacaatca ccgagcgtgt aataccgata
      721 cgatctgcaa tcacagaagc agtcaattgc ccctcattgc cagccaattc acccaaaata
      781 gctgcaactg ctttcatttc tgagtaagat agtgtattta ccgccatatt aactgccgca
      841 cgacgacgga tattcttctc gtcttcttcc cgttggaaat taagtaactg aataccaact
      901 actgttgccg caatctcaac caaaatcaaa tcatcatcgt gaaactgctc atcattccgc
      961 caaataataa gcgaaccaaa acgaatcccc gttacgtgga taggcgctat cgttgtcagc
     1021 ccgtttggat aagtcgagcg tgattcgaca gggatggcag tcaactcgct ctcgacaggc
     1081 aaattaacct gcgtatcgta aacctgcgca actgctttta catatccttc tgggaattgt
     1141 ttgttttgga aaaattcttc cacacgatca ttgtttgtct cataactcat gtggtatccc
     1201 aaaacttcac cttcgctatt aataatacaa gaattgcaat caataatagc tgatagatgt
     1261 tcagcaatag cattgtaagg caattcttct gccaattgct cttcggaacg cttcaaaata
     1321 gaagtaatat tccgtgtctt ctctaataat gttgtcatat tttcctcttt actctgtaat
     1381 tgctttcagt atagcaaaaa atacataaaa tttcaacaat tatcagaata tttaccgttg
     1441 ttagaaaaac acaaacaatt tcatccaagc aaaaagaaat aggctgggca aaaagcccag
     1501 caccgcttct caaagttagt gtcaacatct cagcgcagtg gttgattggg tttaacagtc
     1561 cagtggactg ttaaaggttg gagataagat ttgcgaagca aatctcagca attcgcattt
     1621 tacactccaa atctggccta tacgactgat gcgaacagag ttcgcttcat ctccaccctc
     1681 aaactgtctc ccagacagtt tgagctgtgc gggggtggga gtgaaacagt ctgggaatag
     1741 actgtttcag ctcaacaact agaaataaag acttgttgac gaactcttct tatgaatggt
     1801 tgagttcttt cccactccca aaattccatt atctacgata ttgccgcaag aatcgtgaca
     1861 ttttttcttg aatttctgcc aactcatcaa cacgtggtaa atacacaata cggaaatgat
     1921 ctggatcctt ccagttaaaa cctcgaccat ggaccaaaag tactttttct tgcttgagga
     1981 aatccaatac aaattgttca tcatcctcaa ctctgtacat ctcacgatca atttttggga
     2041 atacatacag accagcctta ggttttacag cagaaagtcc cggaatatca ttaatcgcct
     2101 tggtaatgaa ctccctttgt tcatataagc gtccgccagg catcaagagc tcatcaaccg
     2161 attggtaacc tcccaaagaa gtttgaacaa cctgttgagc caaaacgttt gaacacaaac
     2221 gcatattgga caacatattc aagccttcaa tgtaaccttt tacatgcttt ttcggaccag
     2281 ataagaccat ccaacctact cggaaaccac aaatacgatg tgatttagac agtccattca
     2341 tcgtcacaac aaataaatct ggagccagtg tcgcaatagg gatatgaaca gctccatcaa
     2401 agaccatacg atcataaatc tcatcagaga aaatgatcaa ttcatgtcta cgagcaatat
     2461 caatgattcc ttttaaaatt tctttcggat agagagcacc agttggatta tttggattga
     2521 taaggacaat tgccttggtt cgagaagtca ccttggactc catatctgcc aaatctggat
     2581 accattcagc tgcttcatca caaacataat gaacagcttt accaccagcc aaactaactg
     2641 cggcagtcca gagaggatag tctggcattg gcaccaatac ctcatcacca ttatctagca
     2701 aaccttgcat agacataaca atcagctcac tcacgccgtt tccaagataa atatcttcaa
     2761 tgtcaacatt tggaaatttc tttagctgac aatactgcat gatagcctta cgtgcagaaa
     2821 aaattccctt actgttcgaa tatccctctg atttacgggc gttatgaatc aagtcacgaa
     2881 taacttcatc tggagcagta aaaccaaatt ctgcaggatt ccccgtattc aaacgtaaaa
     2941 tctgctctcc attggcacgc atacgcatgg cctcttccaa aacaggccca cgaatatcat
     3001 atgctacatc atccaatttt gttgacttgt taaattgctt catgtcgtca cctcgacttt
     3061 ctatcttttc tattgtactg taaaagctaa aaaagtacaa gaatccttta cattttctct
     3121 caaaaggctt ataataaaaa tgtaaggaac tactctacct atttcgggac aaagctcttc
     3181 tgaaaggagt gattattatg acacaatctt acaaaacaat actcgtcgct gtagacggct
     3241 ctaaaggagc agaattagct cttcataaag ccattcatgt cgcactacgc aaccaagcac
     3301 gtctgattat cgcccatgtg attgacaccc gtgctctcca caatgttgtt gcatttgacg
     3361 cctctgtcta tgaatcttta gaaagagagg cggagctcct cctcgaagaa tacaaacaag
     3421 aagctctcaa cgccggtctg accgatgtac agatttgcat tgaattcggt aaccctaaaa
     3481 ccctactggc tatcgatatt ccaaaagaaa ccggtgctga tcttatgtta cttggagcaa
     3541 ctggtctaaa cgcctttgaa cgtctcctga tcggatcctc atccgaatat atcatgcgcc
     3601 atgcaactat tgatttactc attgttcgcg atggagaaaa aagtttataa accaaaagac
     3661 ttgatttacg aatcaagtct tttcatctgt cttttcagct cttcctgaat cttttcctcc
     3721 ggcgcaaacc gttcttccca atcatcaggt tttaaaattt tatgggtaat tggatcaaaa
     3781 tgggccttcc catctggaaa agttttcccc atatttgcag tatggactat ctgaaaaatt
     3841 ggttctggat caacccccat caaaacaaac gaaccatatg taaaataaag aatatccagc
     3901 aaagcatcta cctgatcctg catcgaaacc ccgaaacctc tcttgccaga taccttagca
     3961 gcagcagtat ctaaatcccg atgaagttgt tgaataaaat catgaaactc aacttcagat
     4021 tctgaagctg catgtagaaa ttctaccaac tcctccactt taaaaccagc gcgatgcaaa
     4081 gccgtctgtc catcatacac actgggaagt tcttgtgttt caccatccat taaaaaatga
     4141 aaatccttta ccctattaaa attatcgtcc ttgctctgaa acatcttatc cctcaatcac
     4201 accaaaatga attaatgcct tataaatccc atcacgatta tttgtatccg taacaaagga
     4261 agcagcttgt tttacctttt tcgtcccatt tcccatcgct accgagtgct gaatttcatt
     4321 caacatttca aaatcattat tagaatcccc gaataccata acttcatcta actcaaaacc
     4381 atatcgatct gcaaccttta caatacccga taattttgaa tttcccttac tgataatatc
     4441 agtcgcatag ggactcgaac gcgtaaaaga caagttcgga aagagcatct ccaatgattg
     4501 tgtctccctt tccgtcgtca gcaacatcag ctgatagatt ggttgaaaga gaaaaccttt
     4561 caaattcgtt tcctgttgag gactaatcca acgtaccaag cgattgaaaa taaaatttat
     4621 gattccagcc caggactccg gaatcatacg cgtcacacga taggcaaaat ttcctgttcc
     4681 agcactcata atcttactac caaatatgcc tttagcagtt ccaaaagata aatccttatg
     4741 gtgagtttgc gcatactcca taatttgttc aatttgcttt ggctctaaac tctgactata
     4801 aataacttct tctcttgaaa aaatatattg accattataa gcaatggcca aatctagccc
     4861 taaactagcc atatactgca aaacaaaacg agggtcacgt cctgtagcta gaccaactaa
     4921 aatccccttc tctttcaaag cattaatggc gagaatagtt gaactactaa ccatacgatt
     4981 gtcggtcaat aaggtaccat caatatcgaa aaatacagcc tttatcgtca accaactcac
     5041 ctactttcta agaattatgt tacaattagt atatcacact ttgaaagaaa ctgaaaattt
     5101 atgaaaaaaa ttctagtact gcatacaggt ggaaccattt ctatgcaagc caatcatcag
     5161 ggtgaagttg catcgagtaa aatcaatcca atgacccaaa ttgatagccc actagaagaa
     5221 attcaagtga catccttgga ttttctcaat gttccaagtc cacacattcg cttagaacac
     5281 atgatgactc tataccaaaa aattaaagaa gaacaaatga acttcgatgg ttttgtcatt
     5341 acacatggca cagatactct agaagaaact gcctatttcc ttgatacgat ggctattcca
     5401 gaaaaaccaa ttgtattgac cggagccatg cgttcctcaa atgaactagg tagcgacgga
     5461 atttataact accgaacagc cctacgtgtg gctgctgatg ataaatccgc agataaaggt
     5521 gttctagtgg tcatgaacga tgaaattcat gctgctaaat atgttacaaa aacgcatacc
     5581 accaatgtct caacctttca aacaccaacc catggaccac tgggattagt caccaaacga
     5641 gagattctct attttaaaac tgctgaacca cgtgttcgat ttgacttatc aacagtcaca
     5701 ggaacggtct caatcataaa agcttatgca gatatggact ccattctcct tgattctctc
     5761 actgcaagct caatttccgg tttagtcatt gaagcactcg gcgccggaaa tcttccgcct
     5821 accgtccttc cagccattaa gaaactcctt gatcaaaaga tacccattat tctggtatct
     5881 cgctgtttta acggaattgc tgagcctgtc tatgcctacc aaggaggtgg catccaactg
     5941 gagcaagacg gcattctatt tgttaaagaa ttgaatgctc aaaaagcccg actcaaactc
     6001 cttatcgctc tcaatgcagg cttggaagag caaagcttgg cagattacat ccaaggttaa
     6061 tcgctgacga actatacaat at
//
LOCUS       DASGCC010000112         6032 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.112, whole genome shotgun sequence.
ACCESSION   DASGCC010000112 DASGCC010000000
VERSION     DASGCC010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6032
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.112"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            30..1820
                     /locus_tag="U1404_001593"
     CDS             30..1820
                     /locus_tag="U1404_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5348531.1"
                     /translation="MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQ
                     DGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDSTFGGFVDISMFGYDGERKLDDSG
                     LAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
                     IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIP
                     VADWEKSEYSRTAKLVGMGPWKIKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSP
                     DTIVSEMKAGNYDIAEMPVDQLDSYKDVSNLNIVGQLESSYEYISFNLGKYDEAANKN
                     VMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYS
                     YNPEKAKKLLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKE
                     VGLNVELYTGRTVEGKSFYNSVQANDPAIDMYAGGWSTGYDPNPSGLWGSVAAFNMSR
                     FVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVALNKRVK
                     NYDTNYGSASGKGIALENIELTADKGVVAE"
     gene            2197..3195
                     /locus_tag="U1404_001594"
     CDS             2197..3195
                     /locus_tag="U1404_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348532.1"
                     /translation="MATEKPLLDIKDLHVGFRIGDDYFDAVDGVDISLQKNEILAIVG
                     ESGCGKSTLATTIMGLHNPLNTKITGSIQYNDMELIGMNEAKYNTVRGNDIGMIFQDP
                     LASLNPLMTIGAQIDEALFYHTDLDANARTERVLELLAQVGIPNPKRTFKQYPHELSG
                     GMRQRIIIAMALSCKPPIIIADEPTTALDVTIQAQILDLLNDIQAETGSGIILITHDL
                     GVVAETADRVAVMYGGQFVEVAPVEELFTNPKHPYTRSLLKSNPQSGSEGGDLHVIEG
                     IVPPITKMVRKGCRFAPRIPWIGAEAHEENPSMHEVGPNHFVRCTCHETFYFEGEA"
     gene            3198..4139
                     /locus_tag="U1404_001595"
     CDS             3198..4139
                     /locus_tag="U1404_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348533.1"
                     /translation="MGFIEVKDLKVHYPIRSGFFNRVTDHVYAVDGVNIEFEEGKTYG
                     LVGESGSGKSTIGKAIIGLERATSGQIIYEGQNVTNKSRGKKGNFNRDVQMIFQDSLS
                     SFNPKKRILDIIAEPIRNFDRLSPDEEKKKVLQLLDTIGLNEEALIKYPHEFSGGQRQ
                     RIGVARALASNPRLIIADEPVSALDLSVQAQVLNYMKRIQDEFKLSYLFISHDLGVVQ
                     HMCDELFIMYRGRFVETGNKNDIYNNPQHIYTKRLLSAIPTIDPLNRLKNKEKRLAAE
                     KEYQEMQGQYYDENGRVYDLRSFSETHQVALPEGGQN"
     gene            4141..5097
                     /locus_tag="U1404_001596"
     CDS             4141..5097
                     /locus_tag="U1404_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010750774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348534.1"
                     /translation="MWKTVLRRLLMMIPQIIILSVIAFFVAKMMPGDPFTGLIDPNID
                     PAIIEQKRIAAGYYDPIPVQYFRWVGNLLQGDFGQSVIFKQPVVDVIMQRLNNTIGLS
                     LLTMVLTYLIALPLGMIAGRYQNSLADKIIGVYNFLTFSTPTFVFAILMLWMFGFSLG
                     WFPTRGSISGGVEGFAATLSRLHHMILPAITMAILSTTVTIQYLRTGIIDAKSQDYVR
                     TARAKGVPERVVYNRHIFRNSILPIASFLGYELTGLIGGSIFIENIFTYPGIGQLFFN
                     SISSRDYSVILALLLVFGMGTLLGTLISDIIMSIVDPRIRVK"
     gene            5111..6013
                     /locus_tag="U1404_001597"
     CDS             5111..6013
                     /locus_tag="U1404_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348535.1"
                     /translation="MSKENKKQVQSASTPPGGFRVIAREFMKDRLALTSLIILVTVLL
                     AVFIGALLLNQEQVMKVNLLGRYLEPGVDGYILGTDEGGKDIFGQLIIGARNSIIIGF
                     TITIITSIVGISVGLISGYYGGRLDGFLMRIVDFIMILPVTMLIIVFVTVIKNYTIYH
                     FILIMSAFYWTAKARLFRTRTLSEASLDYVNASKTLGTSDFMIMFREILPNLSSLIIV
                     NLTLNFAGNIGIETSLTYLGFGLPSTVPSLGTLIANARNADILENKTWIWLPAAIFIL
                     VMMLCINYVGQAFQRAADAKQRLG"
BASE COUNT         1770 a         1067 c         1338 g         1857 t
ORIGIN      
        1 gtcaaacaaa aagaaaacag aggtgtttta tgaaaaagac aacgaaactt tttgcacttg
       61 caggtgtgac tctcctttca gcatctgttc ttgcagcatg tggttcaaaa caatcaggtg
      121 cagcaaaaca ggaattgtca ttcccagctg aagtaaaaca agacggaaca gcagtgtctg
      181 acgctcagtt gaaatacgca tgggtatcac caacaacttc atcaggtctc ttgattgatg
      241 agttgactga aaatacgact gactcaacat ttggtggttt tgttgatatt tcaatgttcg
      301 gttacgacgg agaacgtaag ttggacgact caggtcttgc caaggctgaa tttgatgtga
      361 aaggtaaaaa aatcacaatt agcttgacag gcaaggatta caagtggtca gatggtgagc
      421 cattcacaat caacgactac atctttacaa ttaagtcaat ggcaagcaaa gactatacag
      481 gtattcgttt tgatgataaa ttcttgaaca ttgaaggcat gcaagaattt gttgatggaa
      541 aagcatcaga catctctggt attaagaaag ttgatgacta tacagtagaa ttgactgtaa
      601 aagaaatgtc accttcaatg atgtatgcag gtggtgatgt cccagcctat atccaaccag
      661 aacacatcta taaagacatc cctgttgcag actgggaaaa gagcgaatac tcacgtactg
      721 cgaagcttgt tggtatggga ccgtggaaga ttaaagaaat tgttaatggt gagtctatca
      781 cttacgtacc aaacgaatac tttttcaagg gtacgaaacc aaaaacaagc tcattgaaga
      841 ttgacatcgt atctcctgat actattgttt ctgaaatgaa agcggggaat tatgatattg
      901 ctgaaatgcc ggttgatcag ttagattcat ataaggatgt ttctaacttg aatatcgttg
      961 gtcagttaga gtcgtcttat gagtatatct cgtttaatct tggtaaatat gacgaagcag
     1021 ctaataagaa cgttatggat gaaaaggcta agatgaatga tgtgaaactt cgtcaagcaa
     1081 ttgcctatgc aattgatacc aagacagctg gcaaatcatt gtacaacggt ctttaccacc
     1141 ctgcaaaatc attgattatc tcattcttcg gggatattca tgattcagag ttggaaggct
     1201 attcatacaa tcctgaaaaa gcgaaaaagc ttttggatga agctggctac aaagatgtag
     1261 atggcgatgg tatccgtgaa ggtaaagacg gtaaggcgtt caaaattacc tttgctgctc
     1321 gtaaacgtac tgaagctaac gaagcgcttg tacaacaata tattgcttgg tggaaagaag
     1381 ttggcttgaa tgtcgaactt tacacaggac gtacagttga aggtaagtcg ttctacaact
     1441 cagttcaagc taatgatcct gctattgata tgtatgctgg tggatggtca acaggttacg
     1501 atccaaatcc aagtggtcta tgggggtctg tcgcagcctt caatatgtca cgtttcgtgt
     1561 ccgatgaaaa caccaagtta ttggaagcta tcagctcagc agagtcgttt gatgataaga
     1621 aaaacgttga gaactataag gcttggcaaa aatatgctca cgagcaagca tttgctattc
     1681 caacatttga atctgagtca attgtagcac ttaacaaacg tgtgaaaaac tatgacacta
     1741 actacggttc agcttcaggt aaaggtatcg ctcttgagaa tatcgaactt actgctgata
     1801 aaggtgtagt ggcagaataa tttgttagaa gacaatagaa tctgaaaaag ccaatttgat
     1861 tggctttttt cagattgcta ttggaatttt cagataattg tggtatagta gactcagtac
     1921 acaaaaatga gtccctacta acaaaaactc aagatgaaga acattaacct actcaattcc
     1981 taattgagac agtaataggg atggtcttga tttatgattg gatataggta cattttttac
     2041 ttctgggtaa tcgctatcaa acgataattt gatagaaata tgttattcta gagtagttat
     2101 ataaagtcag ttaatcaaac gttatatgaa cttgataatc gtaaggctat tgaattgatt
     2161 gagcttgatt agctggcaca taaaggagga aaaagcgtgg ctaccgaaaa accgctttta
     2221 gacattaaag atttacacgt cggtttccgt attggagatg attattttga cgctgttgac
     2281 ggtgttgaca tctcattgca aaaaaatgaa attttggcaa ttgtagggga atctggctgt
     2341 ggtaaatcaa ctttggcaac gaccatcatg ggcttgcata accctttgaa taccaaaatc
     2401 acaggaagca tccagtacaa tgatatggaa ttgattggca tgaatgaagc taagtacaat
     2461 acagtacgcg gtaatgatat tggtatgatt ttccaagatc ccttggcttc tctaaatcca
     2521 ttgatgacga ttggtgcaca gattgatgag gcgctgttct atcacactga tttggatgcc
     2581 aatgctcgta cagagcgagt tttggaactc ttggctcagg taggtattcc aaatcctaag
     2641 cggacattta aacagtatcc acatgagctt tcaggtggta tgcgtcagcg tatcattatt
     2701 gcgatggcct tgtcttgtaa accgccaatt attattgcgg acgaacctac aacagccttg
     2761 gatgttacaa ttcaagcaca aatcttggat ctcttaaatg atattcaagc ggagacaggt
     2821 tctggtatta ttttgattac ccatgacttg ggagtagttg cagaaactgc tgatcgtgtg
     2881 gctgtcatgt acggtggtca gtttgtcgaa gtagcgccag tagaagaact ctttaccaat
     2941 ccaaaacatc catatacacg ttcgctcttg aagtcaaatc ctcaatcagg tagcgaagga
     3001 ggcgatcttc atgttattga aggtattgtg ccgccgatta caaaaatggt tcgtaaaggt
     3061 tgccgttttg ctccgcgtat tccgtggatt ggagcagagg ctcatgaaga gaatccgagc
     3121 atgcacgagg taggtccaaa tcactttgtt cgttgtacct gccatgagac attctatttt
     3181 gaaggggagg cctaatagtg ggatttattg aagtaaaaga tttaaaagtc cattatccaa
     3241 ttcgtagtgg cttctttaac cgtgtgacgg accatgtcta tgctgtggat ggtgttaata
     3301 ttgagtttga agaaggaaaa acctatggtt tggtaggtga gtcaggttct gggaaatcaa
     3361 ccattggtaa ggcaattatc ggtttagagc gtgccacttc tggtcagatt atctatgaag
     3421 gacaaaatgt aaccaacaaa tcacgtggta aaaaaggaaa ctttaatcgt gatgttcaaa
     3481 tgattttcca agattctctt tcaagtttta acccgaaaaa acgtattttg gacatcattg
     3541 cagaaccaat tcgtaacttt gaccgtttat ctccagatga agaaaagaaa aaagttcttc
     3601 aactcttgga tacaatcggt ctaaatgaag aagctctgat taagtatcct cacgaattct
     3661 caggtggtca acgccaacgt atcggtgttg ctcgtgcttt ggctagtaat cctcgtttga
     3721 ttattgcaga tgagccggtt tctgccttgg atttgtctgt gcaggcacag gtcttgaatt
     3781 atatgaaacg tatccaagat gagtttaagc tcagctatct ctttatttcc catgacctcg
     3841 gtgttgtgca acacatgtgt gatgaattgt tcatcatgta tcgcggacgt ttcgtagaaa
     3901 caggaaataa gaatgatatt tataataatc cacaacacat ttatactaaa cgtttgttgt
     3961 cagctattcc aacgattgac ccactcaatc gattgaagaa taaagaaaag cgtttggctg
     4021 ctgaaaaaga atatcaagaa atgcaaggtc aatactatga tgaaaacggt cgtgtgtacg
     4081 atttgaggtc cttctcagaa actcatcaag tagcccttcc agaaggaggt cagaactaag
     4141 atgtggaaaa cagtattacg tcgtttactc atgatgattc cgcagattat tattttgagt
     4201 gtcattgcgt tctttgttgc gaagatgatg ccgggggatc cctttacagg attgattgac
     4261 cccaatattg atccagcaat cattgaacaa aaacggattg cggcaggtta ctatgaccca
     4321 atccctgttc agtatttccg ctgggtaggc aatcttttgc aaggagattt tggtcagagt
     4381 gttattttta aacaaccagt tgttgatgtc atcatgcagc gcttgaataa tacaattgga
     4441 ttatccctct tgacgatggt attgacttat ttgattgcac ttccattggg gatgattgca
     4501 ggtcgttatc aaaactcact tgcagataaa attattggcg tgtataactt cttgacattt
     4561 tcaactccaa ctttcgtttt tgccatcctc atgctctgga tgtttggctt tagtttgggc
     4621 tggttcccga cgcgcggttc gattagtggt ggtgtggaag gatttgcagc gactctcagt
     4681 cgtttacacc atatgattct gccagcgatt acaatggcta ttttgtcaac aacagttact
     4741 attcaatatc tccgtacggg gattattgat gctaagagtc aggactatgt tcgtacagct
     4801 cgtgccaaag gtgttcctga gagagttgtt tataaccgtc atatcttccg gaattctatt
     4861 ttgccaattg catctttctt gggctatgaa ttgacaggat taattggtgg ttctatcttt
     4921 attgaaaata ttttcactta cccaggtatc ggtcagttat tctttaactc tatttctagt
     4981 cgtgactata gtgttatctt agctttattg ttggtatttg gtatgggtac tttgttgggg
     5041 acattgattt cagatattat catgagtatc gtggatccac gtatccgtgt gaaatagaag
     5101 gaggagtaag gtgagtaaag aaaataaaaa acaagtacaa tctgcttcaa ctcctccagg
     5161 tggcttccgt gtcatcgcgc gggagtttat gaaagatcga cttgcattga cctcattaat
     5221 tatcttagtg acggttctct tagcagtctt tatcggtgca cttctgttga atcaagaaca
     5281 agttatgaaa gtcaaccttt tgggacgtta cttggaacca ggtgttgacg gctatatctt
     5341 ggggacagat gaaggtggta aagatatctt tggtcagctg attatcggcg ctcgtaactc
     5401 aatcattatc ggttttacca ttacgattat tacaagtatt gtcgggattt ctgtcggtct
     5461 gatttctggt tattatggcg gtcgtttgga cggattcttg atgcgtattg tcgatttcat
     5521 catgattttg ccggtgacaa tgttgattat tgttttcgtg acagttatca agaactatac
     5581 gatctatcat ttcattctca tcatgagtgc cttttattgg acggccaagg ctcgtctatt
     5641 ccgtacaagg actttgtcag aggcaagttt ggactatgta aatgcatcaa aaacattggg
     5701 aacaagcgac tttatgatta tgttccgtga aattttacca aacttaagtt cattgattat
     5761 cgttaacttg accttgaact ttgcgggaaa tatcggtatc gagacttcgt tgacttatct
     5821 tggtttcggt ctgccatcga cagtaccaag tttgggtacc ttgattgcca atgcccgcaa
     5881 tgcagatatt ttggaaaaca agacatggat ttggttgcca gcagccatct tcatccttgt
     5941 gatgatgctc tgtatcaact atgtcggaca agctttccaa cgtgcagcag atgctaagca
     6001 gcgtttaggt taattgtgaa aagggttcct tt
//
LOCUS       DASGCC010000113         5986 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.113, whole genome shotgun sequence.
ACCESSION   DASGCC010000113 DASGCC010000000
VERSION     DASGCC010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5986
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.113"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..311)
                     /locus_tag="U1404_001598"
     CDS             complement(<1..311)
                     /locus_tag="U1404_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM5348536.1"
                     /translation="MGANQETLMYTLEKSIKKKADLFEHSFSAYAVRSILASLYLGLG
                     IVISLYTADKLNHVAEGLGKFSYGLMFGWGLLMILYMNAELGTSNMMYMTVASHRKTI
                     PT"
     gene            452..1297
                     /locus_tag="U1404_001599"
     CDS             452..1297
                     /locus_tag="U1404_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM5348537.1"
                     /translation="MDVTWTVKYITEFLATALLIIIGNGTVANVDLKGTKGNNSGWIL
                     IAIGYGLAVMMPALMFGNVSGNHINPAFTLGLAVSGLFPWAHVAQYIVAQLLGAMFGQ
                     LVVVAVYKPYFLKTENSNHILGSFSTISALDNGTKESRKAATTNGFLNEFVGSFVLFF
                     GALALTKHFFGSELVGKLIEQGYDKTVAETMTAPYTSGSIAVAHLGIGFLVMALVAAL
                     GGPTGPGLNPARDLGPRIVHALLPKSVLGENKADSKWWYAWVGVCAPIIASIAAVALF
                     KFLYL"
     gene            1430..2962
                     /locus_tag="U1404_001600"
     CDS             1430..2962
                     /locus_tag="U1404_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 family protein"
                     /protein_id="HEM5348538.1"
                     /translation="MSDVIAFGYGSSRAEMQLKRLNRHGIIAGATGTGKTVTLKVLAE
                     QLSDAGIPVFLSDIKGDLNSLVAANTKEIDPSRLEKTHYLDYSPVGYPVELWDVLGEN
                     GTPVRMTISELGPVLLTRLLGLNDTQESILNIVFSVADERGLLLIDLMDLRAMLNFVA
                     ENAAELSQYYGNIPARSVGAILRSLVVLEQQGGKIFFGEPSLDIADLMRTAEDGRGVI
                     NVLQATQLFNQPTLYSTVLLSLLSELYEVLPEVGDLDKPKMVFFFDEAHVLFKDAPKV
                     LLEKIELIVRLIRSKGVGVFFVTQNPTDIPDSVAAQLGNRIQHGLRAFTPKELKTVAT
                     VAETFRQEGDEDLVKVIQELQVGEAVVSTLQVDGTPSFADRVLIYPPKSMLGTVEPSA
                     LLSVINNSPLMEKYADAVNRESAHEQILAMTEAKEAELIKKAEQAEAEKQAEKEAKAA
                     AKMEEKAQKEAAKAAQKTSQPASRKTDSMMDRFTKNLMSQVGREVGRVVTRGIMGMLK
                     GK"
     gene            3074..3682
                     /locus_tag="U1404_001601"
     CDS             3074..3682
                     /locus_tag="U1404_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEM5348539.1"
                     /translation="MTDQLQALLKDYQPQPLGEKRSYAVFLPLVWSDNQWQVLYEIRS
                     ESISQPGEVSFPGGGIDEGETAEEAAIREVIEELDIQQEQIELLGEIDYLVFGRTTIR
                     CFVGRLHLDWQTLQPNDEVARFFTVPLETLLKTAPVYYQLDSQIVPDCDFPFERLRGG
                     VDYPFSHHKRSVPFYENLPENIWGMTAQFTHRFTEIVKNNLS"
     gene            3971..5837
                     /locus_tag="U1404_001602"
                     /pseudo
     CDS             3971..5837
                     /locus_tag="U1404_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775427.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
BASE COUNT         1835 a         1194 c         1354 g         1603 t
ORIGIN      
        1 gtaggaatcg tttttcgatg gctggctact gtcatataca tcatgttgga tgttccaagt
       61 tcggcattca tatataaaat catgagtagc ccccaaccaa acatcaaccc atagctaaat
      121 ttcccgagtc cttctgcgac atggttgagt ttgtctgctg tataaagaga aatgacaatc
      181 cccaatccta aataaagact ggctagtatt gatcgtacag cgtaggcaga aaaactgtgt
      241 tcaaacaaat ctgctttttt cttgatactc ttttcaagtg tatacattaa tgtctcttgg
      301 ttagctccca tcctaatctc cttactgaat ctactacttt ttcgagtaaa cgttttcttt
      361 ttatcgaatg gctttacttt gtttattata cttgataaaa tggttgttgt ccaaaaaaaa
      421 ttcaactttt gaaaggaaat ataagaaaaa tatggatgtt acatggacag tgaaatatat
      481 cactgaattt ttagcgactg cactccttat tatcattggt aatggtacag ttgcaaacgt
      541 tgatttaaaa ggcacaaagg gaaacaactc tggttggatt ctcattgcga ttggctatgg
      601 tttggcagtt atgatgccag cattgatgtt tggtaacgtt tctggtaacc atatcaaccc
      661 agccttcaca cttggtttgg ctgtttcagg tctcttccct tgggctcacg ttgctcaata
      721 cattgttgcc caattgttag gtgcaatgtt tggtcagtta gtggttgtag cagtgtataa
      781 accttacttc ttgaaaactg aaaattctaa ccatattctt ggctcattct caactatcag
      841 tgcgcttgat aacggaacga aagaaagccg taaagctgcg acaactaatg gtttcttgaa
      901 tgagttcgtt ggttcatttg tattgttctt cggtgccctt gctttgacca aacatttctt
      961 tggttcagag ttggttggta aattgattga acagggctat gataaaacag tcgctgagac
     1021 aatgactgct ccatatactt caggttcaat tgcagttgct cacttaggca ttggtttcct
     1081 agttatggct cttgttgccg ctcttggtgg tccaacaggt cctggtctta acccagcgcg
     1141 tgaccttggt ccacgtatcg ttcatgccct tcttccaaaa tctgttcttg gtgaaaacaa
     1201 ggctgattca aaatggtggt atgcttgggt tggtgtatgt gctccaatta tcgcatcaat
     1261 tgccgctgtt gcacttttca aattcttgta tctataatat agagaacccg attcgtcggg
     1321 tttttctttt tgttttatgg atattgaggt gattcggttg tctgctctgc tattttccta
     1381 aaagttatgc tacaataaag ttagaaaaaa tcggaaatga ggctagaata tgtcagatgt
     1441 tattgctttt ggctatggaa gcagtcgagc ggagatgcag ctcaagcggc tcaatcgtca
     1501 tggaatcatc gcaggtgcga caggtacagg gaagaccgtg accttaaagg tcttggcaga
     1561 gcagttgagt gatgcgggaa ttcccgtctt tctatcggac atcaagggtg atttgaatag
     1621 tttggttgcg gccaatacca aggagattga tcctagtcgt ctagagaaga ctcattatct
     1681 tgactatagc ccagtcggtt atccagttga gttgtgggat gtcttggggg aaaatgggac
     1741 tcctgtccgt atgaccattt cagagctggg tcctgtccta ctgacacgtt tgttgggctt
     1801 gaatgatact caggagtcca tcctgaatat tgttttcagc gtggcagatg agcgtgggct
     1861 tctcttgatt gatttgatgg acctgcgggc tatgctcaat tttgtggctg aaaatgcggc
     1921 agagctgagc cagtattatg gaaatattcc agctcgttcg gttggtgcca tcttgcgtag
     1981 tctggttgtt ttggagcaac aaggtggtaa gattttcttc ggtgagccaa gccttgatat
     2041 tgctgatttg atgcgtacag cagaagatgg ccgtggggtt atcaacgttc tccaagctac
     2101 tcagctattt aatcagccaa cattgtattc aacggttctt ctcagtctct tatcagaact
     2161 ctatgaagtc ttgcctgagg tgggcgattt ggacaagcct aagatggtct tcttctttga
     2221 tgaggctcat gttctcttca aagatgctcc aaaagttctt cttgaaaaga ttgaattgat
     2281 tgttcgtttg attcgttcaa aaggtgtagg tgtctttttt gtaacgcaga atccaacgga
     2341 tattcctgat agcgtggcag cccagttagg aaatcgtatc cagcatggtc ttcgcgcctt
     2401 tacaccaaaa gagctcaaga cagttgcgac tgttgccgaa accttccgtc aagaaggtga
     2461 tgaggatttg gtcaaggtca ttcaggaatt gcaggtaggt gaagcggttg tgtctactct
     2521 gcaagttgac gggacaccaa gctttgcgga tcgagtattg atttatcctc caaagagtat
     2581 gctgggaacg gtggagccaa gtgccctctt gtcagttatc aacaactctc ctttgatgga
     2641 aaaatatgct gacgcggtca atcgtgagtc agcacatgag cagattttag ccatgacaga
     2701 ggctaaagaa gccgaactca ttaaaaaagc agagcaggcc gaagcggaaa aacaggcaga
     2761 aaaagaagct aaggcagccg caaaaatgga agagaaagcc cagaaagaag cagctaaagc
     2821 tgcacaaaaa actagtcagc cagccagtcg caaaacagat tccatgatgg atcgctttac
     2881 caagaacctg atgagtcagg tcggacggga agttgggcgc gtggtaactc gtggcattat
     2941 gggcatgtta aaagggaaat aaacgactag actgagaagg aaacttctca gttttttatc
     3001 tagacaaagt tcttgccaga tgccacaaaa ttcgttaaaa taaacgcaaa tcactagtta
     3061 gtaaggagtt gccatgactg atcaattgca ggcattattg aaagactatc agccccagcc
     3121 attgggtgaa aaacgttctt atgcagtttt cttgccctta gtctggtcag acaatcagtg
     3181 gcaggtctta tatgagattc ggagcgagtc catttctcaa ccaggagaag tttcctttcc
     3241 aggtggcgga attgatgaag gcgagacagc agaagaagct gccattcgtg aggttatcga
     3301 agaacttgac attcaacagg aacaaattga gttgctgggg gaaatcgact atctagtttt
     3361 tggccgcacg acgattcgct gttttgtcgg gcgacttcac ttggactggc agacccttca
     3421 acccaatgat gaagtagctc gattcttcac cgttccactg gaaaccttgc tgaaaacggc
     3481 ccctgtctat tatcaactgg attcacagat tgtcccagat tgtgactttc cctttgaacg
     3541 tttgagaggt ggggttgact atcctttcag tcatcacaaa cgatccgttc cattttatga
     3601 aaatctacca gaaaatatct ggggaatgac cgcccaattt acccatcgtt ttacggaaat
     3661 agtgaaaaat aatctatcgt gaaatgatag gttatttttt tggaggaaaa accagccttt
     3721 gcgatatgta tcagcgaaaa aatggagaca aagctcagcg tgagcaatgt acagaaaaac
     3781 acgcaaaaaa cagattcgta gcagataaaa gatagctatg gctggtatac ttggtacgat
     3841 ccatatttga agtaccatca tctatccagg aatgcgacaa catgcatgta aacgcattca
     3901 gtggattgtt atcatttcca gtaaatgagt gggaaaatgt ataaatctat attttaaaaa
     3961 ggagccaatt atgagcaagc agaaagttgt atccagttta ttattaagca cggtcgtatt
     4021 agggggatta gccttttatt caacgacaac ggttaaggca gaatcgctag aaacagatgt
     4081 tacatcagtt agttcaggtg atgttgttga gaaaccggta gtatcagatg gaggggaaag
     4141 cgacttttta gctgaagaag aggagcttga agacgatgag cctttggaag aagaattaaa
     4201 tgagaaagcc gaagaggtta cggagccatc ttcacctgaa gcacttcttc aacctcgtgc
     4261 ggtgatgagc gattctggta gtaatgatac ggaagaaatt ccagtgaatg atgagccttc
     4321 agattacaca gtagaaaaag tggtgaagca aaagccagaa ctcattcaaa catcaaatgt
     4381 ggattctaaa gcgacgggcg atgatcaggc taagattagg gcgtcagtat ctatagagtc
     4441 tttgcaggca gaaagaaata agattagatg gcaagtgact tttgacacag gggcatggtc
     4501 ttttgataaa tctcctggag gtttttattt tgttcttcca gaaggcttgg aattgacaga
     4561 aattattgat aatgaccacg gtagatcgaa tataattaat gatttcccta cagatattaa
     4621 tgatccgaaa aatgacggtg gacaaaaata ccgtttcttt aataaagaag aaaacagcga
     4681 tagctttaat aatcaatggg gggtggtcag cagggcaagc tcctaatgaa atgattaata
     4741 actggaaaac aggaaatcgt ttttctaaga tttactttat agataaaata acagatacta
     4801 gacaggtaac ctatacttta actgctagtg tgactgattc aaatcaaaaa tcattcccac
     4861 ttgtagcagt gatgaagagc ttttggtata caaactcgca aggaacgcag attacttcat
     4921 tagctggtcg tgagattacc cttgagaaag aaaaacctct accacctaaa gagactccag
     4981 cgccagaagc tccgtcaact cctgaaaagc aaccggaatc tccaaaggaa gatcctaaga
     5041 aggaagatac tccggaggtt tcaccaaaac cagaagcgcc aacaccagac gcaccaaaac
     5101 aggacgttcc agaaactccg gataagcaac cagaagaaat gcctaaagtt cctgaagcac
     5161 cgaaggaaga cgctccagct ccagcgccat cgactccatc agtaccagaa gaaaaaccaa
     5221 aggaagattc gaaaccagaa gtgccatcag caccggaagc tccaaaggac gctccatcaa
     5281 ttccggaaaa acaaccagac gctccacaag ttccattgac tcctgaagaa aaaccacaag
     5341 taccggaagc accaaagcaa gacgatgtcc aaccagacgc tccacaagta ccggaagcac
     5401 cacaacaaga cgacgtccaa ccagacgctc cacaagtacc ggaagcaccg aaggaagaag
     5461 ttccaacccc accggctcca tcagtaccag aagagcaacc aaaagaaact ccaacaccag
     5521 aagttccaaa acaagacgat gttcaaccgg aagcaccaaa atctgataaa gtagaaactg
     5581 acaaacaaat gccagaaact aagcaaccag atatgaagca accgaaggca gataaaccag
     5641 aagcagagaa agctcaaatg ccacggacag agggtatgaa gcctgaatct aaggcttcaa
     5701 tgatgccaaa agcagaggca ccaaaagcaa ctttgccaaa tacaggcgaa gcaagtagcg
     5761 caataggctg gctaggtggt gctttagcca ctcttgccac aggcttgtat ctattcaaaa
     5821 acaaaaaaga agaatagtca ttattgaata agatatgaga acttccctct tctaagttca
     5881 taaaagactc cagatcatcg ctgtagaagc cttggtttgg agtctttttg ttaaatattc
     5941 ttagaaaata acaaaataga taaatattag ataccctcta gaaaaa
//
LOCUS       DASGCC010000114         5939 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.114, whole genome shotgun sequence.
ACCESSION   DASGCC010000114 DASGCC010000000
VERSION     DASGCC010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5939
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.114"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(6..551)
                     /locus_tag="U1404_001603"
     CDS             complement(6..551)
                     /locus_tag="U1404_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5348540.1"
                     /translation="MANVLFLVGSLRDGSFNHQMAKKAEAFLADKAQVSYIDLAKIPL
                     FNQDIETPILPEIAELRAQVDAADAIWIFSPVYNYAIPGIVKNALDWLSRSLDLSNPK
                     GPSILQDKITTVSAVANSGHDHLFKDFQHLLPFIRTQIAGEFTGSTINPEAWGTGVLE
                     LSDETLAKLEQQAADLLAAIQ"
     gene            complement(614..1063)
                     /locus_tag="U1404_001604"
     CDS             complement(614..1063)
                     /locus_tag="U1404_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5348541.1"
                     /translation="MRTVEQSLNENKHALHSLVVFRRAANTITKSELETIKKYGLTVC
                     QFGVMEALYNKGNLRIQDLIDKLLSTSGNMTVVIKNMIRDGYIYKTIDTNDRRASLIA
                     LTPLGRETIEKILPEHYDHVGEIFSVLSSEEQDQLAEILKKFKNQQT"
     gene            1366..1863
                     /locus_tag="U1404_001605"
     CDS             1366..1863
                     /locus_tag="U1404_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5590 domain-containing protein"
                     /protein_id="HEM5348542.1"
                     /translation="MEKKIFQLLEWMASKTGQLVLGSFILLSVVTFSIFTIWDIAAAP
                     FNNVRSHAVAVATEYADLQTVNDFSIYNGTETYFCVFGVTSQGEEVAVLIPEASSTVY
                     VYPLVQGISQEEAQAIAKKNGASQVERTILGLRDGKPIWEVKSGTAYYLVEFETGNFI
                     KREGL"
     gene            1860..3041
                     /locus_tag="U1404_001606"
     CDS             1860..3041
                     /locus_tag="U1404_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5348543.1"
                     /translation="MSKLSRRVLEMEESVTLAAGARAKALKAEGRDILELTLGEPDFV
                     TPKNIQEAAIKSIEDGKASFYTVASGHPELKDAVNTYFENFYGYSIERNQVVLATGAK
                     FVLYAFFAAVINPGDEVIIPTPYWVSYADQIKMNDGVPVFVTAREEHNFKVTVDQLEA
                     ARTDKTKVFLLNTPSNPTGMIYSREELEAIGNWAVEHDILILADDIYGRLVYNGNGFT
                     PISSISESIRQQTIVVNGVAKAYAMTGWRVGFAVGNPEIIAAMSKIVGQTTSNLTTAA
                     QYAAIEAFTGPQDTVETMRQAFEERLNTIYPLLAEVPGFEVIKPEGAFYLFPNVKKAM
                     EMKGYTDVTEFTTAILEEVGVAMVTGAGFGAPENIRLSYATDMDTLKEAVARLHTFMK
                     K"
     gene            3056..4402
                     /gene="asnS"
                     /locus_tag="U1404_001607"
     CDS             3056..4402
                     /gene="asnS"
                     /locus_tag="U1404_001607"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEM5348544.1"
                     /translation="MSRKLITINQVKDYVGQEVTIGAWVANKSGKGKLAFLQLRDGTA
                     FFQAVALKPNFIEKFGEEAGTEKFDVAKRLSQETSVYVTGIVKEDERSKFGYELDVTD
                     LEVIGESQDYPITPKEHGTDFLMDNRHLWLRSRKQIAIQQIRNAIIYATYEFFEKNGF
                     IKFDSPILSGNAAEDSTELFETDYFGQPAYLSQSGQLYLEAGAMALGRVFDFGPVFRA
                     EKSKTRRHLTEFWMMDAEYSFLSHEESLDLQEAYVKALIQGVIDRAPQALETLERDVD
                     ALKRYIAEPFKRVAYDDAITLLQEHEADEDTDYEHIEHGDDFGSPHETWISNYFGVPT
                     FVVNYPASFKAFYMKLVPGNPERVLCADLLAPEGYGEIIGGSMREDNYDALVAKMDEL
                     GMDKSEYEFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPRMLHRLHP"
     gene            4674..4901
                     /locus_tag="U1404_001608"
     CDS             4674..4901
                     /locus_tag="U1404_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation repressor RelB"
                     /protein_id="HEM5348545.1"
                     /translation="MGIVSLRLNDAEEEIFRSYAIHTGKSLSELFKTALAEQIEDQLD
                     YEIGIKALKKFQENPVTHSIDDVLAELEDGL"
     gene            4891..5160
                     /locus_tag="U1404_001609"
     CDS             4891..5160
                     /locus_tag="U1404_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5348546.1"
                     /translation="MAYKLVLSDDALKQLKKMDRHVGMMLAKDLKKRLDGLENPRQFG
                     KALVGDYKGLWRYRVGNYRVICDIIDNKMVILALEIGHRKEIYKK"
     gene            5566..>5939
                     /locus_tag="U1404_001610"
     CDS             5566..>5939
                     /locus_tag="U1404_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5348547.1"
                     /translation="MKQESLGKEIIRLSLPATVENIFQTLVGFVDSLLIAQLGLVAVT
                     AVGLANTILNVYLAVYMALGVGATALIARSIGAGDRESLTFHVRQALVLSVGVGVLFG
                     LLSLVFGRQMLVLMGADAESLAG"
BASE COUNT         1657 a         1103 c         1408 g         1771 t
ORIGIN      
        1 tttgattatt gaattgctgc caacaggtca gctgcttgtt gctcgagttt tgctagagtt
       61 tcgtcagata actctaatac acctgttccc catgcttctg gattaatggt tgaacctgta
      121 aattcaccag caatctgagt acggataaat ggaagaaggt gttggaagtc tttgaatagg
      181 tggtcgtgac cactgtttgc gacggcagag acagttgtga ttttatcttg taggatagat
      241 ggtccttttg gattggataa atcgagcgaa cgactgagcc aatcgagagc attttttacg
      301 atgcctggga ttgcatagtt atatactggt gagaaaatcc agatagcatc cgcagcgtct
      361 acttgtgcac gtagctctgc aatttcagga aggataggtg tctcgatgtc ttggttgaat
      421 aggggaattt ttgcaagatc aatgtaagat acttgagcct tatcagccaa gaacgcttca
      481 gctttttttg ccatttgatg gttaaaagaa ccgtcacgta gtgaaccaac taaaaacaat
      541 acgtttgcca tgatggcctc cttttcataa aaacataaat ttagtatatc gtatttgtct
      601 tttgttggca atcctaggtc tgctggttct tgaatttttt aagtatctcg gctaattggt
      661 cttgttcttc tgaactaagg acagaaaaaa tctctccaac gtgatcataa tgctctggaa
      721 ggattttttc aatggtttcg cgtccaagtg gagtgagagc aatcaaggaa gcacgacggt
      781 catttgtatc gatagtcttg tagatataac catctcgaat catgtttttt ataacgacag
      841 tcatgttgcc agaagtactt aataatttat caattaagtc ttgaattcgc agatttcctt
      901 tgttgtagag tgcctccatc actccaaact gacaaactgt cagtccgtat tttttgattg
      961 tttctaattc tgattttgtg atagtattag ctgctctgcg aaagacgact agactgtgaa
     1021 gtgcatgctt gttctcgttt aaagattgtt caacagttct catgagaata ttttagcaat
     1081 aaatagttcg gttatcaagc aaaaaaagtt aaatcctata ttcataggta aagtactttt
     1141 atggaaaaga tagtttttag ttaatcaagt tcgttttttg aggtaatact aactgtactg
     1201 gaaaaaaacg agcaatgagc atttgagaaa tagtcttaga tggaagtgca aaactgtgaa
     1261 tgtaggtttt tatatccttt tctttgtgtg aaggaaaagg aaattttatt tacaatcacg
     1321 gaaagaatgg aaatatgctt taatttgtag tataatggga ctactatgga aaaaaagatt
     1381 tttcaactgt tggagtggat ggcttccaag actggtcagt tagtgttggg ctcttttatc
     1441 cttctcagtg ttgtgacttt ttcaattttt actatttggg atattgctgc tgcccctttc
     1501 aacaatgtgc gtagtcatgc agttgcagta gctacagaat atgctgattt gcaaactgtc
     1561 aatgattttt ctatctacaa tggtactgaa acctattttt gtgtatttgg tgtcaccagt
     1621 cagggagaag aggttgcagt tttgattcca gaggcttcta gcacagtata tgtctatcct
     1681 ttagttcagg gaatttcgca agaagaagcg caagctattg ccaagaaaaa cggtgcaagc
     1741 caagtagagc gaactattct aggtttaagg gatggcaaac ctatttggga agtcaagtca
     1801 ggtactgcct actatttagt tgaatttgaa acagggaact ttatcaaacg ggagggctta
     1861 tgagcaagtt atcaagacga gtcttagaga tggaagaaag tgtaactctg gcagcaggtg
     1921 cgcgtgcaaa agccttgaag gcggaaggac gtgatatttt agagctgacc ttgggtgagc
     1981 cagacttcgt cacaccgaaa aatattcaag aagctgctat taagtctatc gaagatggta
     2041 aggcgagttt ttatacggta gcttcagggc atcctgagtt gaaggacgca gtcaatacct
     2101 actttgagaa tttctatggc tactctatcg aacgcaatca agtcgttctt gcgacaggtg
     2161 ctaagtttgt tctttatgct ttctttgcgg cggtcatcaa tcctggtgat gaggtgatta
     2221 ttccgacacc ttactgggtt tcttatgcag atcaaatcaa gatgaatgat ggggtgcctg
     2281 tctttgtcac tgcaagggaa gagcataatt tcaaggtaac ggttgaccag ctggaagcag
     2341 ctcggacaga taagaccaaa gtattcctac tcaatactcc ttctaatccg actgggatga
     2401 tttacagtcg tgaggaattg gaagcaattg gaaactgggc tgtagagcac gatattctca
     2461 tcttggcaga cgatatttat ggtcgtttgg tctataatgg aaatggcttc acaccgattt
     2521 caagcatttc agaaagcatt cgtcagcaga ctattgttgt caatggggtg gcaaaggcct
     2581 atgctatgac aggttggcgg gttggttttg ccgttggtaa tcctgaaatc attgcggcca
     2641 tgagtaagat tgtcggacaa acgacttcga atttaacgac tgctgctcag tatgcggcca
     2701 ttgaagcctt tacaggtccg caagatacag tagaaaccat gcgtcaggcc tttgaagagc
     2761 gactcaatac catttatccc ttgctggcag aagtaccagg ttttgaagtg attaagccag
     2821 aaggggcctt ctatctcttc ccgaatgtta aaaaagctat ggaaatgaaa ggctacacag
     2881 atgtaactga atttaccaca gccattttgg aagaagtggg agttgcaatg gtgacaggtg
     2941 ctggttttgg agctcctgag aatatccgcc tcagctatgc gacagatatg gacacgctca
     3001 aagaagcagt ggctcgacta catacattta tgaaaaaata aaaagaggaa aaataatgtc
     3061 tagaaaattg attaccatta accaagtcaa agattatgtc ggtcaagaag tgactattgg
     3121 tgcctgggtt gccaacaaat caggcaaggg caagttagcc ttcctgcaat tgcgtgacgg
     3181 aacagccttc ttccaagcag ttgccttaaa accaaacttc atcgaaaaat tcggtgaaga
     3241 agctgggact gagaagttcg atgtagcaaa acgcctcagc caagaaacgt ctgtctatgt
     3301 gacaggaatt gtcaaggaag atgagcgttc taagtttggt tatgagttgg atgtgacaga
     3361 ccttgaagta atcggtgagt cacaagatta cccaatcaca ccaaaagaac acggtacgga
     3421 cttccttatg gacaaccgtc acctctggtt gcgttctcgt aaacagatcg ctatccagca
     3481 aatccgtaac gccatcatct atgcgactta tgaattcttt gaaaagaatg gctttatcaa
     3541 gtttgatagc ccaatcttgt ctggaaacgc tgcagaagat tcgacagagt tgttcgaaac
     3601 tgactacttt ggtcaacctg cctacctcag ccaatctggt cagctgtacc tggaagctgg
     3661 tgccatggcc cttggtcgtg ttttcgactt cggacctgtt ttccgtgcgg aaaaatcaaa
     3721 aactcgccgt cacttgacgg agttctggat gatggatgcc gagtattcat tcctcagcca
     3781 tgaagagtca cttgatttgc aagaagctta tgtcaaagcc ttgattcaag gtgttatcga
     3841 ccgtgctcca caagccttgg aaactcttga gcgtgatgtg gatgctctca aacgctacat
     3901 tgcggagcca ttcaaacgtg tggcttatga tgatgccatt acccttcttc aagagcatga
     3961 agctgatgaa gatacagact acgaacacat cgagcatggt gatgactttg gatcgccaca
     4021 tgaaacttgg atttcaaact actttggtgt accgactttc gttgttaact atccagcaag
     4081 cttcaaggcc ttctacatga agctagttcc aggtaatcca gagcgcgtgc tttgtgcgga
     4141 cctcttggca ccagaaggct acggtgaaat catcggtggt tctatgcgtg aggacaatta
     4201 cgatgccttg gtagccaaga tggacgagct cggcatggat aagtcagaat acgaattcta
     4261 ccttgaccta cgtaagtacg gttcagtacc acacggtggt ttcggtatcg gtatcgagcg
     4321 tatggtgact tttgttgcag gtacaaaaca catccgtgaa gccattccgt tcccacgtat
     4381 gttgcaccgc ttgcatccgt aatacagtcg ttcagttttt cctttattac gtcgacgtat
     4441 gaggaaactc cgtttcctta tttccaagtt caaataatct catcattatt tgaactcgtt
     4501 ttgccgtacc ttagtacagt ctgcagctcg ttgcctagta ctaaaagtaa actgaaagac
     4561 tgcgaaataa atattcactg acagactaca aacgtggtct gtttttctgg tgtcaattga
     4621 cattttgaac gaattgtttt acaatgtatt acaagaagaa agtaggtgga atgatgggaa
     4681 ttgtatcctt gcgattaaac gatgcagaag aagaaatttt cagaagctat gctattcata
     4741 caggaaaaag cctgtctgag ctattcaaaa ctgcacttgc tgaacagata gaagaccagt
     4801 tggactatga aattggtatc aaggctttga agaaattcca agaaaatcct gttacacact
     4861 cgattgatga tgttcttgcg gagttagaag atggcttata agcttgttct cagcgatgat
     4921 gctttgaagc agttgaaaaa aatggacagg catgtgggga tgatgcttgc taaggatttg
     4981 aaaaaacgtt tggacggttt ggagaatcca agacaatttg ggaaggcctt ggtaggagac
     5041 tataaggggc tgtggcggta tagagtgggg aattaccgtg taatttgtga tattattgat
     5101 aacaaaatgg tcatcctggc ccttgaaatc gggcaccgga aagaaatcta taaaaaatga
     5161 agttctaggt aactaggctc ggtatcggtg tacttctcag agttcgtgtc aacatctcag
     5221 cgcagtggtt gattggcttt aacagtccag tggagtgaag cagttctggg aactgtttca
     5281 gcccgagcct tgaagcagaa aagctaggta aaaaggttgg agataaggtt tgcgaagcaa
     5341 atctcagcaa ttcgtgtttt ccactccaaa tctgacctat acgactgatg cgaactttgt
     5401 tcgccttatc tctaacctcc aaaggttccc tgaaactttg gagctatgcg ggggtggaga
     5461 gatgaactcc tttttgactt atcgagttct tccccactcc ctgttttctt tctttttcac
     5521 cgagttttat ttataattat tctaaataaa atcgtggaga ggaaaatgaa gcaagaaagt
     5581 ttaggaaaag aaattattcg tttgtccttg cctgctacgg tggaaaatat ctttcagacc
     5641 ttagttggtt ttgtggatag cctcttgatt gcacagctgg ggctggtagc ggtgacggca
     5701 gttggtcttg ccaatacgat tttgaacgtc tatttggcgg tctatatggc tttgggagtt
     5761 ggggcaacag ctttgattgc tcggtctatt ggcgcaggag atagggaatc tcttaccttt
     5821 catgtccgtc aagccttagt gctttcagta ggtgtaggtg tgctatttgg tttactatcc
     5881 cttgttttcg ggcggcagat gctggtctta atgggagcag atgcggagag tttggctgg
//
LOCUS       DASGCC010000115         5914 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.115, whole genome shotgun sequence.
ACCESSION   DASGCC010000115 DASGCC010000000
VERSION     DASGCC010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5914
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.115"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(53..1558)
                     /gene="pyk"
                     /locus_tag="U1404_001611"
     CDS             complement(53..1558)
                     /gene="pyk"
                     /locus_tag="U1404_001611"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEM5348548.1"
                     /translation="MNKRVKIVATLGPAVEIRGGKKFGDDGYWGEKLDVESSAQKIAA
                     LITEGANVFRFNFSHGDHQEQGDRMATVRRAEEIAGKKVGFLLDTKGPEIRTELFEDD
                     AKEYAYTTGDKLRVATKQGIKSTKEVIALNVAGGLDVFDDVEVGKQILVDDGKLGLTV
                     VEKDAVNREFVVLVENDGVIAKQKGVNIPYTKIPFPALAERDNADIRFGLEQGLNFIA
                     ISFVRTAKDVEVVRNICKETGNDHVQLFAKIENQQGIDNIDEIIEAADGIMIARGDMG
                     IEVPFEMVPVYQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGT
                     DATMLSGESANGKYPVESVRTMATIAKNAQTLLNEYGRLNSDQFNRASKTEVIASAVK
                     DACHSMDIKLVVTVTETGYSARSISKYRPDADILAVTFTEKVQKSLMLNWGVIPIVTN
                     RPDSTDDMFDLAERIAKEQGLVEAGDDIIIVAGVPVGVAGSTNTMRVRTVK"
     gene            complement(1625..2635)
                     /gene="pfkA"
                     /locus_tag="U1404_001612"
     CDS             complement(1625..2635)
                     /gene="pfkA"
                     /locus_tag="U1404_001612"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEM5348549.1"
                     /translation="MKRIAVLTSGGDAPGMNAAIRAVVRQAISEGMEVYGINEGYAGM
                     VAGDIHELSARSVGDIISRGGTFLGSARYPEFAKLEGQLKGIEQLKKHGIEGVVVIGG
                     DGSYHGAMRLTEHGFPAIGVPGTIDNDIVGTDFTIGFDTAVTTAMDAIDKIRDTSSSH
                     RRTFVIEVMGRHAGDIALWAGIASGADVIVVPEEDFNINDIVDRIKAGYDNGKKHSII
                     VLAEGVMPAAQFAEELKAAGDTSDLRVTELGHIQRGGSPTARDRVLASRMGAHAVKLL
                     KEGRGGLAVGIRNEQMVENPILGTAEEGALFSLTTDGKIVVNNPHKADLELADLNRNL
                     SI"
     gene            complement(2720..5830)
                     /locus_tag="U1404_001613"
     CDS             complement(2720..5830)
                     /locus_tag="U1404_001613"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM5348550.1"
                     /translation="MLAQLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLY
                     AAYSFMESCNKMGLQPIIGCELDWKLQEGEQDVTTQLIALTTRGYRNLLKISTAKMIG
                     QDDFETIRQYLVDIAVVVPYFSGIEHLELGVNYYIGVTVDTPVQDFKQAILPIHTVRF
                     FEEEQLESLQVLHAIRDNIPLNQVVDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDLV
                     AGISYQLNTDLKLPRFNRDRPAVEELYERSYQGLEEKGLTNSLYKERLEKELSIIHQM
                     GFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLN
                     AERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGT
                     PEYELSNITKKISFRDSLTSAYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIH
                     AAGIVMSDEDLTDTIPLKIGDDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEG
                     VRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVA
                     TTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYA
                     GFTLGKADLLRRAMSKKNAQEMQVMEAEFLQGALKNGHAEENAREIFGMVAKFAGYGF
                     NRSHAYAYSALAFQMAYFKSHYTDVFFDVMLNHSSSAYIEDAMQFDFEVARLTINNIP
                     YHDKFDKSKVYLGLKTLKGLPKDLALWILDHRPYKSVEDFILRLPDNFKKKDLLIPLI
                     QIGLFDDFVANRKKIIENLDNLFVFAEAIGTFFAEESYSWTDVEDYSDSEKFMLEQEL
                     LGVGISPHPLVNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLR
                     VTDTKRTLDVTLFPESYRQYASILEEGGMGYITGRVQERDGQLQLVLEKLEPVSLEKF
                     WILLENREHDYAVARILDKYRGSIPVVLHYQDSNQTIQAEHHMVMKTPQLEEELSEFV
                     MKTIFR"
BASE COUNT         1741 a         1369 c         1001 g         1803 t
ORIGIN      
        1 gtatttaact tattctctaa ttactacaaa aaggtccaag cggacctttt tattatttta
       61 ctgtacgaac acgcatagtg tttgttgaac ctgcaacacc tacaggcaca ccagcaacga
      121 taataatgtc atctcctgct tcaacaagac cttgctcttt ggcaatacgt tcagccaaat
      181 caaacatatc gtcagttgaa tctggacggt ttgttacaat tggaataaca ccccagttaa
      241 gcatcaatga tttttgtact ttctcagtaa atgttactgc caagatgtcc gcatctggac
      301 ggtatttaga gatcgaacga gctgagtaac ctgtttctgt aactgttaca actagtttga
      361 tgtccattga gtgacatgcg tcttttactg cagaagcaat aacttctgtt ttagaggcac
      421 gattaaactg atcagagttc aaacgaccat attcattaag aagagtctgt gcgtttttag
      481 cgatagttgc cattgtacga actgattcta ctggatattt accgtttgca gactcacccg
      541 aaagcattgt tgcgtcagta ccgtcgataa ctgcgttgaa tacgtcagat acttcagaac
      601 gagttgcacg tggtttttca gtcattgttt ccaacatgtt tgttgctgtg ataactgctt
      661 taccagctgc attcacttta gtgataatca ttttttggta aactggaacc atttcgaatg
      721 gtacttcgat acccatgtca ccacgagcaa tcatgatacc atctgctgct tcgatgattt
      781 cgtcgatgtt gtcaatacct tgttggtttt cgattttcgc aaacaattga acgtggtcgt
      841 taccagtttc tttacagatg ttacgaacaa cttctacgtc ttttgcagta cgtacaaatg
      901 agatagcaat aaagttcaaa ccttgctcaa gaccgaagcg gatatctgca ttatcacgct
      961 ctgcaagagc tgggaaagga atttttgtgt aagggatgtt tacacctttt tgtttagcaa
     1021 ttacaccgtc gttttcaacc aaaacaacaa attcacggtt tactgcatct ttttcaacaa
     1081 ctgtcaaacc aagtttacca tcgtcaacaa ggatttgctt accaacttca acatcgtcaa
     1141 agacatccaa accacctgct acgttcaagg caatcacttc ttttgtagat ttgatacctt
     1201 gttttgtagc aacacgcaat ttgtcaccag ttgtatatgc atattctttt gcatcatctt
     1261 caaacaattc tgtacggatt tctggacctt ttgtatccaa caagaaacct acttttttac
     1321 cagcgatttc ttctgcacga cgaactgttg ccatacgatc accttgctct tggtggtcac
     1381 cgtgtgagaa gttgaaacgg aaaacattgg caccttctgt aatcaaagca gcaattttct
     1441 gtgctgatga ctcaacatct aatttttcac cccagtaacc atcgtcaccg aattttttac
     1501 caccgcggat ttctaccgct ggaccaaggg ttgcaacaat tttaacacgt ttgttcatct
     1561 taacaaaact ccttttattt caatggtcat acgaccctta attaacactt ttaaacaacg
     1621 atacctagat tgacaagtta cggttcaaat cagccaactc caaatctgct ttatgcggat
     1681 tattaactac aatcttgcca tcagtagtca agctaaacaa ggcaccttct tctgcagttc
     1741 caagaattgg attttcaacc atttgctcgt tacggatacc tactgcaaga cctccacggc
     1801 cttctttaag caatttaacg gcatgagcac ccatacgaga agcgagtaca cgatcacgcg
     1861 ctgttggaga accaccacgt tggatatgac caagttctgt cacacgaaga tcacttgtat
     1921 cgcctgctgc tttcaattct tcagcgaact gtgcagctgg cataacacct tcagccaaaa
     1981 caatgatgct atgtttctta ccattgtcgt agcccgcttt aatacggtca acaatatcgt
     2041 tgatattgaa gtcttcttct ggaacaacga taacatctgc accagaagca ataccagccc
     2101 aaagagcgat gtctcctgca tgacgtccca ttacttcaat gacgaaagta cgacggtgac
     2161 ttgatgaagt atcgcgaatc ttatcaatcg catccatggc agttgttaca gctgtgtcaa
     2221 aaccgattgt aaaatctgtc cccacgatgt cgttgtcaat ggtaccaggt acaccaatag
     2281 ctgggaaacc atgctccgtc aagcgcattg ctccgtggta agaaccgtca ccaccgataa
     2341 ccactacacc ttcgatacca tgttttttca attgctcaat ccctttaagt tgcccttcta
     2401 atttggcaaa ttctggataa cgagctgaac caaggaatgt tcctccacgt gaaataatat
     2461 cacctacaga acgtgcagac aattcatgga tatcacccgc aaccatacct gcgtaacctt
     2521 cgttgattcc ataaacttcc attccttctg aaattgcttg gcgaacaact gcacgaatag
     2581 cagcgttcat accaggggca tcaccaccac tggtcaaaac agcaatacgt ttcattcgtt
     2641 aatgctcctt taacttttca ttttaactgc cctattataa catacttagc ctaaacttgc
     2701 ttgacttttt gctatttttt tatcgaaaaa tcgttttcat aacaaattca cttaactctt
     2761 cttctaattg aggcgttttc ataaccatgt ggtgctcagc ctgaattgtc tggttactat
     2821 cttgataatg aagtactact ggaatgcttc ctctatattt atccaaaata cgagcaacag
     2881 cataatcgtg ttctcgattt tccaaaagaa tccaaaattt ctccaaactg acaggctcta
     2941 atttttctag aactaattgc aactgtccat cgcgctcttg cactctacct gtgatgtacc
     3001 ccattccccc ttcttccaaa atagaagcgt attggcgata agattctggg aaaagagtca
     3061 cgtcaagcgt cctcttggta tctgtcactc gaagaaatgc catctgctcc ccagtctttt
     3121 tggtacgaat caatcgaata gcttgaatct gcacaagaac ggtcgctcga ttgccaaccg
     3181 ctaaatcagc caaatctgta aaactacgct tagactctcg acaaatattg actaaaggat
     3241 gcggactaat accaacacct agcaattctt gctctagcat aaatttttca ctgtcgctgt
     3301 aatcttctac atctgtccaa ctataactct cctctgcaaa aaatgtacca atcgcctctg
     3361 caaagacaaa gagattgtct agattttcaa taatcttttt acgattggcg acaaaatcat
     3421 caaataaacc aatctgaata agagggatta gtaaatcttt tttcttgaaa ttatctggca
     3481 agcgcaaaat aaaatcttct acagacttat agggacgatg atccaatatc cataaagcta
     3541 aatctttagg taaacctttt agtgttttta atcctaggta gaccttactt ttatcaaact
     3601 tatcgtgata aggaatattg ttaatcgtga gtcgagctac ctcaaagtca aactgcatcg
     3661 catcttcaat ataagcactg ctagaatgat tgagcatgac atcaaaaaag acatccgtat
     3721 agtgactctt gaaataggcc atttgaaagg ctaaggctga ataagcatag gcgtggctgc
     3781 ggttaaaacc ataaccagcg aacttagcca ccatgccaaa tatttccctt gcattctctt
     3841 cagcatgtcc gtttttcagt gctccctgta aaaattccgc ttccattacc tgcatttcct
     3901 gggcattctt tttagacatc gccctgcgga gtaaatccgc ctttccaagc gtaaatcctg
     3961 catagacctg tgcaatctgc atgacctgtt cctgataaag catgatacca taagtcggtt
     4021 gtaaaatagg agcaatggtt gggtccaaca aatcaactgt ctcttgtcca tgtttgcgtt
     4081 ttacaaagtt atccgaataa tcactagcac ccggtctatt caaactcgtt gttgcaacta
     4141 tatcctcaaa tcgaccaggt ttgacccttc gaagcaggct aatcgcacca ggctgttcaa
     4201 attgaaaaat tcccttagtc cgaccagcag caaaaagttc caaggttttc ttatcttcta
     4261 aatctatctt ggcaatatca atttcctgct gataacgttc acgtactcct tctgccattt
     4321 tttgcacaaa ggtcagattt cgtaagccaa ggaaatccat cttcaacaga ccattcgcct
     4381 caacagcatg tgcatcatat tgggttacca gcatgtcatc ccctatttta agagggatgg
     4441 tatctgtcaa atcctcatca ctcatcacta tccctgctgc atggatagaa gtctgtcggg
     4501 gttgcccttc aatttgttga gcaatcgcaa aagctttttg gtactctatc ttactattga
     4561 taatctgacg aaaagcggca tttcgctgat aggcagaagt aagactatcc ctaaatgaaa
     4621 ttttcttggt aatattactt aactcatatt caggtgttcc gaaacgctta aatacatcac
     4681 gaatggcctg cttagctcca aatgtcgagt aggttacaat ttgcgcagca tgggttgaac
     4741 cataacgatc tcgtacataa cgaataaaat ctgctcgatg aatatctgga atatcaatat
     4801 caatatcggg cattgaataa cgttcagcat tgagaaagcg ttcaaagaga agattatgct
     4861 taacaggatc aatacctgtg atatttaagg cgtaggcaac taggcttcca acagctgaac
     4921 cgcgccccat tcccatgtag tacccttggc tacgcccaaa acgaagtagg tcccatacaa
     4981 tcaagaaata atcgtcaaat cccatttgat gaataatgga taattccttt tccaatcgtt
     5041 ccttatacag tgaattagtc aagcccttct cttctaatcc ttgataggag cgctcgtata
     5101 attcttccac tgcaggtctg tcacgattaa aacgcggcaa ttttaaatct gtatttaatt
     5161 gataagaaat ccctgcaacc aagtcacgta aattatcaac tgcttgcgga aaccgattcg
     5221 aaaatagatt ggttaaacta tcagccgata aaagcttttg tcgactatct atatctacaa
     5281 cttgattaag tggaatatta tctcgaatag catgtagaac ctgtagactt tccaattgtt
     5341 cctcttcaaa aaaacgaacc gtatgaattg ggagtattgc ttgcttaaag tcttgaactg
     5401 gtgtatcaac cgtcactccg atataatagt taacacctaa ctcaaggtgc tcaatgccag
     5461 aaaaataagg aacaaccact gctatgtcga ctaaatattg acgaatagtt tcaaaatcat
     5521 cttgccctat catcttagca gtcgaaattt tcaatagatt gcgataacct ctggttgtca
     5581 gagcaatcaa ttgagtagtt acgtcctgct ccccttcctg taatttccag tccagttcac
     5641 aaccaataat tggttgaagc cccattttgt tacaggattc cataaaacta taggctgcat
     5701 aaagactgtt tttatccatt atccccaatg cgtgataacc gagctcttta gccctgccta
     5761 cataattttc tatcgtcacc atgctatcca taaaggtata aactgtcttt gtatctaatt
     5821 gtgctagcat ggcattctcc ttttgttgct tcttcttaaa ttatatcaaa taatcatcaa
     5881 aaaatatttt aaaaaaattc aaaacatttc cctt
//
LOCUS       DASGCC010000116         5822 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.116, whole genome shotgun sequence.
ACCESSION   DASGCC010000116 DASGCC010000000
VERSION     DASGCC010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5822
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.116"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            29..949
                     /locus_tag="U1404_001614"
     CDS             29..949
                     /locus_tag="U1404_001614"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009568566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HEM5348551.1"
                     /translation="MKNEFLNFEQIDRATWQQLHRKTTIPLSQSELNSIKSFNDRIQL
                     HEVSDIYLPLVNLIHIYRKARKDLNFTKSLFLQKTIKPQPFIIGVSGSVAVGKSTTSR
                     LLQILIARTFKHAKVELVTTDGFLHPNAVLEERQLLNKKGFPESYDMEKLIDFLDKIK
                     NGYDCQIPVYSHEIYDIVPNKTQEIKSPDFLIVEGINVFQNPQNQRLYVSDYFDLSIY
                     VDADVEHIETWYLERFQKLLTLAKNDPNNYYHRFTQMTYPEILSIAQNTWKNINLANL
                     EKFIEPTRNRADIILHKAENHEIDKIYLKK"
     gene            1008..1256
                     /locus_tag="U1404_001615"
     CDS             1008..1256
                     /locus_tag="U1404_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEM5348552.1"
                     /translation="MEVKPLANIKSAIKRAELNVKQNEKNSAQKSAMRTAIKAFEANP
                     SEELFRAASSAIDKAETKGLIHKNKASRDKARLASKLA"
     gene            complement(1518..2747)
                     /locus_tag="U1404_001616"
     CDS             complement(1518..2747)
                     /locus_tag="U1404_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM5348553.1"
                     /translation="MRKVSRGVLTILLSATVLSACSGGGQELSERLEAAKIEFSKEKK
                     QLEAELTALKEEVQGNFYYQQLDTDKERRVYLQFVNGLSKRMQVIDIDSVNDEIYSRV
                     YFSVAHDYPEFYWLTDEAAMAGGIDILDLEEPVYPSDLSPTQNKIEDEVNKILAQTPK
                     GSDYEKVKYFYEVIIKQTDYDLEALQTKSVTWRSQGITSVLLDKKSVCAGYSRTFQYL
                     CKKAGIDCIYVTGIAKNGQNGEFGHAWNLVKINGQYYGVDTTWGDPVFDQAISGEAHT
                     DISYDYLCVPDEILERSRIADSDLLDYWGEEQYYEPRVLVYPKCTDNSLNYYVQKGVY
                     FTSFDEAAVLQSITDQRLQGTNKVVLQFGTAEAMQQMITLASTENNAIFQALGDVGEY
                     QYYYNDQTYTFELADWF"
     gene            complement(3071..4450)
                     /locus_tag="U1404_001617"
     CDS             complement(3071..4450)
                     /locus_tag="U1404_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM5348554.1"
                     /translation="MPKRFKKLMYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMY
                     QNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQDSPTGEETTSSSSDSTPVPKNQK
                     NTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
                     SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYESTVAIVMVSAWLIS
                     ILASIYLSNLSMRPILISYQKQKDFVENASHELRTPLAVLQNRLESLFRHPETTILES
                     SESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFDEIFANYLMIAEENG
                     KTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGTIQMAANIKDKLVCFTVID
                     NGLGISDADKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKG
                     TIFEVRLPK"
     gene            complement(4443..5114)
                     /locus_tag="U1404_001618"
     CDS             complement(4443..5114)
                     /locus_tag="U1404_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5348555.1"
                     /translation="MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGVYEAETGV
                     YDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKP
                     FYLEELKMRIQALLKRAGKFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVY
                     FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGY
                     ILKNA"
     gene            complement(5308..5688)
                     /locus_tag="U1404_001619"
     CDS             complement(5308..5688)
                     /locus_tag="U1404_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348556.1"
                     /translation="MSFINQFKSQSKTVLAAVAISAATLGFAGGMSISKSSTGVSTQS
                     QASLAQNSSAAMNGQGAPQGMPPGKGGPSQGMPPGQGTPPHDATSGATQSNSSTSSDE
                     VNALKKKNQEIKAQISGDSSSSNQ"
BASE COUNT         1837 a         1187 c          955 g         1843 t
ORIGIN      
        1 aaacgcttac ctataggaag aattatgtat gaaaaatgaa tttttaaatt ttgaacaaat
       61 tgaccgagcc acttggcaac aactacatcg taagactacc attccactta gtcaaagcga
      121 actaaattct attaaaagtt ttaacgaccg catccaatta catgaggttt ctgacatcta
      181 tcttcctttg gttaatctta tccatatcta tcggaaagca cgcaaagacc taaattttac
      241 gaagagttta tttctacaga agactatcaa gccacaacca tttatcattg gcgtttctgg
      301 aagtgttgct gtcggcaaat caacaactag tagattgctg caaattctta tcgctcggac
      361 atttaaacac gccaaggttg aattagtaac aacagatggt tttctccatc caaatgcggt
      421 cttagaagaa cggcaactgt taaataaaaa aggttttcct gaatcctatg acatggagaa
      481 attgattgat ttccttgata agataaaaaa cggctacgac tgccaaattc ctgtctattc
      541 acatgaaatc tatgatattg tccccaacaa aactcaggaa attaaatctc cagatttctt
      601 gattgttgaa ggaatcaatg tatttcaaaa tccacaaaac cagcgcctct atgtcagtga
      661 ctattttgac ctatctatat acgttgacgc tgatgtggag catattgaaa cctggtactt
      721 ggagcgattc caaaaattat tgacattggc aaaaaatgac cctaacaact attaccatcg
      781 ttttacccag atgacgtacc ctgagattct atctattgcc cagaatactt ggaaaaatat
      841 taatctagct aacttagaaa aattcattga accaaccaga aaccgtgctg atattattct
      901 tcataaggcc gaaaaccatg agattgataa aatttatcta aaaaaataaa tttcacttgt
      961 caaaaatact cttttcagat ataatggtat agttagtaca agaaagggtg gaggtgaaac
     1021 cattggcaaa cattaagtca gctatcaaac gcgctgaatt gaacgttaaa caaaacgaga
     1081 aaaactcagc acaaaaatca gctatgcgta ctgcaatcaa agcatttgaa gctaacccat
     1141 ctgaagagct tttccgtgct gctagttcag caatcgataa agcagaaact aaaggtttga
     1201 ttcacaaaaa caaagcaagc cgcgataaag cacgtcttgc atcaaaactt gcttaattaa
     1261 aaaagaaacc tttgggtttc ctttttttat tttttccatc ataaggaggc gggacaaagt
     1321 ggatcagttt tcccgcgatg actaacatca ttaactcgtc aaccacaaag ccctcactat
     1381 gattatacac ctagtgaggg ctttgtggtt gttttcatta ttctgtgggt gagggcggag
     1441 ccaccatgga tgtctttccc gctccctatt ttttattatt agggaagaac acgctcctag
     1501 agattcaaac taattcctta aaaccaatct gccagttcaa atgtataggt ttggtcatta
     1561 taatagtact gatactctcc tacatcgccc aaagcctgaa aaatagcatt attttcagta
     1621 gaggccaatg taatcatttg ttgcattgct tctgctgttc cgaattgcaa gactacttta
     1681 ttcgtacctt gtagccgctg gtcagtgatg gactgtaaaa ctgcagcttc atcaaagctt
     1741 gtgaaataaa ctcccttttg aacatagtaa ttcaatgaat tatctgtaca ctttggatag
     1801 accaatactc taggttcgta atattgttct tctccccagt agtcgagtag gtcgctatca
     1861 gcaattctac ttctctctaa tatttcatca gggacacata gataatcgta tgaaatatct
     1921 gtatgcgctt ctccacttat agcttgatca aaaactggat ctccccaagt cgtatcaaca
     1981 ccatagtatt gtccatttat cttgactaga ttccaagcat gcccaaactc accgttttgc
     2041 ccattttttg caatccctgt gacatagata caatcaatgc ctgctttttt acatagatat
     2101 tggaaggtgc gactatagcc agcacaaacg gatttcttat ctaatagcac actggtaatt
     2161 ccttgacttc tccacgtgac agatttggtc tgcagggctt caaggtcgta atccgtttgc
     2221 tttataatca cctcgtaaaa atatttaact ttctcatagt ccgacccttt tggtgtctga
     2281 gcaagtatct tattcacttc atcttctatt ttattttgtg tcggagataa atcactcgga
     2341 tacaccggct cttctaaatc caatatatca attccaccag ccattgctgc ttcatctgtt
     2401 agccagtaaa attctggata atcatgggcg acagaaaaat atacgcgcga atatatttca
     2461 tcattaacag aatcaatatc gatcacttgc atccgcttgc tgagtccatt aacaaattgg
     2521 agatagacac gacgttcctt atcagtatcc aattgttggt agtaaaaatt tccttgaacc
     2581 tcttctttta atgctgttaa ttctgcttct agttgctttt tttctttaga aaattcaatt
     2641 ttagctgctt ccaaacgttc actcagctct tgtcctcctc ctgaacaagc agaaaggact
     2701 gtcgccgata ataatatggt taaaacgcca cgagaaactt tcctcatatt tacctccatt
     2761 cttgtttaag tataacataa ttaggaggca tctgacaaac tacacaaaac aaaaagggag
     2821 tggaaagaat tcaatagatc gaaaaagaat tcccctcact tccaaacatt taggttcgat
     2881 tttctatggt cactttctta tttttaggtg accagctgaa acagttcccc aaacctttgg
     2941 aggctggaga tagagcgaac agagttcgct acaaaactat ctgggagaca gttggaagtt
     3001 ggaaatagag cgaactttga gaagaaaggc tggatttttt acccagcctc taatcttgat
     3061 gaatggtcag ttatttgggt aaacgtacct caaaaatagt tcctttcggt tggttatctc
     3121 tcacagaaat ctcaccatct aaattcttaa taatttgttg agctaaagat aaacctaaac
     3181 caaatccacc tttttgacgt gttctagcct tgtcaactcg gtaaaagcga tcaaagattt
     3241 tctttttatc ggcatcgctg attcccaaac cattgtcaat aactgtaaaa caaactagtt
     3301 tatccttgat attagctgcc atttgaattg tcccatcatc atcggtatac ttcatagcgt
     3361 tgtcaaacaa aatggtgagc aactgtttaa tcaaaacttt gtctgttcga attggctgat
     3421 gaatcaaatt attaactgtt agagtttttc cattttcttc ggcaatcata aggtaattag
     3481 caaagatttc atcaaaatag ttgggttgga catcgatcat atcgactttt aagccatcat
     3541 cacgacgagc caaattaagt aaatttgttg tcaatagtcg catatttcga acttcttcta
     3601 aactagatcc gatgctttca ctactttcca aaatagttgt ctcgggatga cgaaatagac
     3661 tttccaggcg attttgaaga actgccaacg gtgtgcgtaa ctcatgacta gcattttcaa
     3721 cgaagtcttt ttgtttttga taactaatta ggattggacg catgctaaga ttcgataggt
     3781 aaatacttgc tagtatagaa atcaaccaag ctgataccat aacaatagca actgtcgatt
     3841 catagctctc aatggaagat ttaatttggc tgacattcac caaaattgtc gcatatttta
     3901 tatcatagga cgaataatac cctagttcat ctgtagccag cccaatcgtt atatagcgat
     3961 aatcttcaga cataccaaaa cttgattcaa ccgtagtttc cttaatttca cccaattttt
     4021 ccttgtctaa tgataggtcg gccaaaccag taaaagtatc tggattaatc atctctccac
     4081 ttttactata gagtaaaaca tgagtattgg cacctaacct cagctgatct ccagctctag
     4141 tatttttttg atttttagga acaggcgtgc tatctgaact agagctcgta gtttcttcac
     4201 cagttggact atcttgaagg ataaatacag aattgggctc ataggttctt gcgattgcaa
     4261 aaccaacagc cagcgctggt tctttcttaa tgcgtttcaa ggtgttatct gaattttggt
     4321 acatagttga acgcattaat tgaaaaatga tggctgtcat taaaccaaaa atcagagtaa
     4381 atactgcaaa ataacggata aagaaagaaa atttatccgt gtacattaat tttttaaatc
     4441 gcttaggcat tttttagaat gtatccaaca ctacgcaggg tttgaagatt ttccccaaag
     4501 gtcgttcctt tcaacttttt cctaatttta gaaacatata cttctactac tgaaattgta
     4561 gtatcactgt caaagcccca aatacggtca aaaatttgtg tttttggcaa aataacattt
     4621 tgattttgca agaaataaac tagtagatca aattcttttc ctagcagttc aacttcttcg
     4681 ccatttacca tcgtcatatt tgtagatagg tcaactgtca catctccaaa ggttagtgtg
     4741 ttttcattaa acttacccgc tcgttttaat agagcttgaa ttcgcatctt caattcttct
     4801 aaataaaacg gttttgtcaa atagtcatca gcccccaatt caaaaccatg gcctttatcc
     4861 tctagacttt ccttggctgt tgtaatcaga acaggtgtcg taacaccttt ttcacgtaat
     4921 tctttcaaga cttggaagcc atctttttca ggcaacatca aatccaaaag aatcaaatca
     4981 taaacgcctg tttccgcctc ataaacgccc tcttcaccat caaaaacctg cataacatcc
     5041 gcaaaatcat ctaagaaatc gaaaacagaa tttgatagac ttaaatcatc ttccactaac
     5101 aatattttaa tcatcataca cttccttacg tttcggttta ataaacaaac caaagacctg
     5161 ggacaggtca cggtctttaa gagaaatggt tagataaagt actactatga ccatctgaaa
     5221 aatgaatgat aaggtagtct ttatctaact atttattgat acgagttcat tatatcatgg
     5281 aataagtaaa aatcgaaatc tcaatattta ttgattagaa gaactactat ctcctgaaat
     5341 ttgagcttta atttcttgat tcttcttttt taaagcattc acttcatcag aagaagtact
     5401 cgagtttgac tgagttgctc cacttgttgc atcatgaggg ggtgtacctt gtccaggtgg
     5461 cataccttgg ctaggacctc ctttacctgg tggcatgcct tggggagctc cttgtccatt
     5521 cattgctgca gaactatttt gcgccaaact tgcctgactt tgtgttgaaa ctcctgttga
     5581 gcttttcgaa atactcattc cccctgcaaa gcccaaggta gcagctgaaa tagcaacagc
     5641 agctagtact gtttttgact gtgacttaaa ttgattaata aatgacatga aattcccctt
     5701 ttcaatagaa tattatcaga atgagacctg ttaaataact cctcttcacc tgatgataat
     5761 agtatagtat tgaaaactta aaacaagcta aagaaattca gcatttttta taaaagtcca
     5821 tt
//
LOCUS       DASGCC010000117         5783 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.117, whole genome shotgun sequence.
ACCESSION   DASGCC010000117 DASGCC010000000
VERSION     DASGCC010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5783
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.117"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..968)
                     /locus_tag="U1404_001620"
     CDS             complement(<1..968)
                     /locus_tag="U1404_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM5348557.1"
                     /translation="MSLSLRTIKLIFATVLAIYLATVLGLSYTTAAGIIAILSVLDTR
                     KSSFKMARNRLFSTLLALTIAVLTFALFGFGIWTLGIYLALYVPLAYRFNWEAGIAPS
                     TVLVTHLLLEQDISLIFLGNELALFLIGAGLALLFNLYMPSQEKKIQAYHDQVEDLLK
                     QILLRFEAFLLNGDGRNEAELITQLDQTLEQALKVVYLDRHNQLFQQTNYQVHYFEMR
                     AAQNKILRTMAGNINKCLLEGRENVILSSLFERAAQQLSRENSAKELLLDIELFHATF
                     RERPLPQTREEFETRATLFQLLHDMEAFIRLKVDFYEVYKDEKDPS"
     gene            complement(1043..1432)
                     /locus_tag="U1404_001621"
     CDS             complement(1043..1432)
                     /locus_tag="U1404_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1761 domain-containing protein"
                     /protein_id="HEM5348558.1"
                     /translation="MTLIFGIVAGLIAFAIGGLWYGLIFRDAWIKASGIDMAKVEADR
                     QAGKNGQKEMVISLVIEVLTAVVAIFFIKTLGVSPLHAAGGMGVIAVLASLKNYVFEQ
                     RPINLILINESYKLVCYLVVGILALFA"
     gene            1570..2298
                     /gene="rlmB"
                     /locus_tag="U1404_001622"
     CDS             1570..2298
                     /gene="rlmB"
                     /locus_tag="U1404_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEM5348559.1"
                     /translation="MEHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA
                     EKKVSISWTPKKTLSDMTEGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDG
                     LTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQT
                     LDKLKEAGFWVFGTDMNGTPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMK
                     GHVQSLNASVAAAVLMYEVFRKKI"
     gene            2299..2820
                     /locus_tag="U1404_001623"
     CDS             2299..2820
                     /locus_tag="U1404_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEM5348560.1"
                     /translation="MKEKVLIVDGYNMIAFWQATKQDFKKGDLDAARTTLLRTLSHYA
                     AFEQIEVICVFDAHHVPGLRQQYDEFKVSVIFTEEEETADSYIERLSAQLNSDRRKQV
                     SVATSDLNEQWVVFSQGALRVSARELEERTRIIKKDLDKFVDQVELYTPRLNPWSDGN
                     FQALKEMMEEMKE"
     gene            2817..3680
                     /locus_tag="U1404_001624"
     CDS             2817..3680
                     /locus_tag="U1404_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5348561.1"
                     /translation="MTFTIVTDSTSDLPISWVQENDVTVLGLTINLDGVTYETVGENR
                     LTSADLLEKMASGSQPTTSQVNVGQFEEVFEEAAKEGHEVLYLAFSAALSGTYQSAVI
                     AREMVVDQYPDAVITIVDTKAATIGEGYLVMKAVEARAAGKTLAETKAIVEDLVPRLR
                     TYLLVDDLNHLVRGGRLSKAAALIGGLVNIKPLLALNAEGKLEAIAKIRGRKKGIKEM
                     LNLTLDNLDHSTVMVAYTGDIEAAEGVKSSLLEDDRISDVLLTELGPVIATHTGTGVL
                     AILSIGTAMRA"
     gene            4144..4590
                     /gene="rplM"
                     /locus_tag="U1404_001625"
     CDS             4144..4590
                     /gene="rplM"
                     /locus_tag="U1404_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003083327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEM5348562.1"
                     /translation="MNKTTFMAKPGQVERKWYVVDATDVPLGRLSAVVASVLRGKNKP
                     TFTPHTDTGDFVIVINAEKVKLTGKKATDKIYYTHSNHPGGLKSISAGELRSKNAVRL
                     IEKSVKGMLPHNTLGRAQGMKLKVFVGGEHTHAAQQPEVLDISGLI"
     gene            4610..5002
                     /gene="rpsI"
                     /locus_tag="U1404_001626"
     CDS             4610..5002
                     /gene="rpsI"
                     /locus_tag="U1404_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEM5348563.1"
                     /translation="MAQAQYTGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADL
                     RLVINQPFAVTSTQGSYDVFVNVNGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAG
                     LLTRDARMVERKKPGLKKARKASQFSKR"
     gene            complement(5111..>5783)
                     /locus_tag="U1404_001627"
     CDS             complement(5111..>5783)
                     /locus_tag="U1404_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5348564.1"
                     /translation="QLAEARRDEDLYLTQEQLQEWFSAFQDDLASGKISLKDYVLFYL
                     TFFLGDRKSESYALQWKHIDFEKSQIQLLQALDRYGDVKSTKGNKKTIFAISTDLLQL
                     LQGWKSQQKQELAKFGIITNPEQFVFTYIDTKGNINKPLHADYLNNKMKTIKKRHPKL
                     THATPHKLRHTGATLAKKAGMSLEAISEALTHSDTLTTKTYVNTSNIVPLSAGHVAYQ
                     HLKNE"
BASE COUNT         1633 a         1215 c         1427 g         1508 t
ORIGIN      
        1 tatgacgggt ctttttcatc tttatagact tcataaaaat caaccttgag gcgaataaag
       61 gcttccatat catgcaggag ttggaagagg gtggcacggg tttcaaattc ttcccttgtt
      121 tgtggcagag gtcgctcgcg gaaggtggca tggaagagct cgatgtctag gagcagttcc
      181 ttggcggagt tttctcgact cagttgctgg gctgctcgct cgaagaggct ggacaggatg
      241 acattttctc tgccttccag taaacatttg ttgatatttc ctgccatggt ccgcaggatt
      301 ttattttgtg cggcccgcat ttcaaagtaa tggacctggt aattggtttg ctggaagagt
      361 tggttgtggc ggtccagata gacgactttc agagcttgct ccaaggtctg atccaactgc
      421 gtaatcaatt cagcctcgtt tcgtccgtct ccgttaagta gaaaggcttc aaagcgaagc
      481 agaatctgct tgagcaggtc ttcgacttgg tcgtggtagg cctggatttt cttttcttgc
      541 gagggcatat agaggttaaa caggagtgcc agtcctgccc caatcagaaa aagcgccagc
      601 tcatttccca aaaaaatcag cgaaatatct tgctccagca agaggtgggt aacgaggacg
      661 gtcgaggggg cgatgccagc ctcccagttg aaacggtagg ccagggggac gtagagggct
      721 aggtaaatgc ccagggtcca gatgccaaag ccaaagaggg cgaaggtcag gacggctatg
      781 gtcagggcca ggagggtgga aaagaggcgg ttgcgagcca ttttgaagct ggacttgcgg
      841 gtgtcgagga cgctgagaat ggcgatgatg cctgccgctg tcgtataaga caggcccagt
      901 acggtcgcta ggtaaatagc cagaacggtg gcaaatatca gtttgatggt gcggagggag
      961 agggacatga gggctccttt ggttttagtc tatttctatt gtatcataaa ataaaaacct
     1021 cctaaggata ggagggaatt acttatgcaa atagagccag aataccgact actaggtagc
     1081 agactagttt gtagctttcg ttgatgagga taaggttgat agggcgttgc tcaaagacgt
     1141 agtttttcaa tgaagcgagg accgcaatta cgcccatgcc accagctgca tgaagtggtg
     1201 aaacaccgag ggtcttgatg aagaaaatag ccacaacagc agtcagtact tcaatgacaa
     1261 gggaaatcac catttccttc tgtccatttt tgccagcctg acgatctgct tctaccttag
     1321 ccatgtcaat gcctgaagcc ttgatccaag catcgcggaa aatcaaacca taccacaaac
     1381 caccaatagc aaaggcaatc agccccgcca caattccaaa aataagtgtc ataaaatctc
     1441 ctttttcgat tccgtttgta cggacaaatt gatagaacta aggataacat agattgtata
     1501 ggcggtcaag tttttcagct ggaacacagt gagcgcctat tttcagtcaa cctatgctat
     1561 aataaaacca tggaacataa tgatatcgta tatggcgtac atgctgtagt ggagagtttg
     1621 gaggccaaca ccggcaacaa actttacatt caggatgatt tgcgcggaaa aaatgtagaa
     1681 aaaatcaagg cgctggcggc agagaagaag gtgtcgattt cttggacgcc caagaagacc
     1741 ctgtctgaca tgacagaagg tgccgttcac caaggctttg tcctgcgggt ctctgagttc
     1801 gcctatgcgg acctgtcggt gattttggaa aaggcagagc aggaagacaa tcccctcatt
     1861 ctcatcttgg acggtctgac agacccccac aatttcggct cgattttgcg gaccgcagat
     1921 gccactcagg tagctggcat catcattccc aagcaccgag cagttggtgt gacgcccgtt
     1981 gtggcaaaga cctcaacagg tgcggtggcc catgtcccaa ttgcccgagt gaccaatctt
     2041 agccaaaccc tcgacaaact caaggaggct ggtttctggg tatttggtac cgatatgaac
     2101 ggaaccccaa gccacaagtg gaatacggct ggcaagctag ctctcattat cggcaacgaa
     2161 ggcaagggca tctccagcaa tatcaaaaag caggtggatg agatgattac cattcctatg
     2221 aagggccatg tccaatctct caatgctagc gtagcagcag ctgtactgat gtacgaagta
     2281 tttcggaaga aaatctaaat gaaagaaaaa gttctcattg tagatggcta caacatgatt
     2341 gccttttggc aggccaccaa gcaagatttt aaaaagggag acttggatgc ggccagaacg
     2401 accttgcttc gcaccttgtc tcactacgca gcctttgaac agattgaggt aatttgtgtc
     2461 tttgatgccc accatgtgcc aggtcttcgc cagcagtatg acgaattcaa ggtatcggtc
     2521 atttttacag aggaggaaga gacggcagat agttatatcg agcggctcag cgcccagctc
     2581 aatagtgacc gccgcaagca ggtttccgtc gcaaccagcg acctcaacga acaatgggtg
     2641 gtcttttcac aaggggcctt acgggtttcg gcgcgtgaat tagaggagag aaccaggatt
     2701 atcaagaagg acttggacaa gtttgtggac caggtagaac tctacacccc acgactcaat
     2761 ccctggtcag atgggaattt tcaagcctta aaagaaatga tggaggaaat gaaagagtga
     2821 catttacaat cgtaaccgat tcgacatcgg atttgccaat cagctgggtc caagaaaacg
     2881 atgtgaccgt gcttggtttg accattaacc tagacggcgt gacttatgaa acagtcggtg
     2941 aaaaccgctt gacctcagca gatttactgg agaaaatggc ttctggcagc caacctacga
     3001 ccagtcaggt caatgttggt cagtttgaag aagtttttga agaggcagcc aaggaaggtc
     3061 atgaggtact ttatctcgct ttctcagcag ctctttcagg gacctaccag agtgcagtca
     3121 ttgcacgaga gatggtagtg gaccaatatc cagatgcagt catcaccatc gttgatacaa
     3181 aggcagcgac cattggagaa ggctacttag tcatgaaagc cgttgaggca cgtgctgcag
     3241 gtaagactct ggcagaaaca aaggcaatcg tagaagattt ggtgcctcgc ttacggactt
     3301 acctcttggt cgacgacctt aatcatttgg tgcgaggtgg acgcctgtct aaagcggcag
     3361 ccctcatcgg tggattggtc aatatcaagc ctctccttgc actcaatgcg gaagggaagt
     3421 tagaagccat tgccaaaatc cgtggtcgta aaaaaggaat taaggaaatg ctgaatctga
     3481 ccttggataa cttggatcat tctacggtca tggtggccta tacgggtgat attgaggcgg
     3541 cagagggcgt caaatctagt ttattggaag acgaccgtat ttctgatgtt ctattgacag
     3601 aattaggacc agttattgcc actcatacag ggactggagt cttagctatt ttatcaattg
     3661 ggacagcaat gagagcctag attctaaggg atatttcttg taaagatgtg tctcttttgt
     3721 acgatgacga cttatgtagc atagggtaat caaaaggaga tacgataatg ctcattgtca
     3781 agttgttccg accagaagcc ttggatggct gaaactggtg ttttacaggt cttctggtct
     3841 atacggtgga tgaattggtc ttggaagaat ttgataaaac ctttccttat aaggagaagc
     3901 tggtcttgcc tggacaacta gggcagtagg gaaagtaaac ctgataaggc tttcattctc
     3961 agcagctctg ctatctttca aaaaataaaa aaagtaaagt aaaatagctt gacggagact
     4021 agtagatttg ataaaatggt agacggtatt gtttacccca tttgaaaggc cccggaacct
     4081 tccaaatacc cgcggaccgg aacatccgcc cagtaaacaa aaacgattcg tataggagaa
     4141 atcatgaaca aaacaacatt tatggctaaa ccaggccaag ttgaacgtaa atggtatgta
     4201 gtagacgcta ctgatgtacc tcttggacgc ctttcagcag tagttgctag cgttcttcgc
     4261 ggtaaaaaca aaccaacttt cacacctcac actgatactg gtgacttcgt tatcgttatc
     4321 aacgctgaga aagtgaaatt gactggtaaa aaagcaactg ataagattta ttacactcac
     4381 tcaaaccacc caggcggatt gaaatcaatc tcagctggtg aattgcgttc taaaaacgct
     4441 gttcgtttga ttgaaaaatc agttaaaggt atgcttccac acaacacact tggtcgtgca
     4501 caaggcatga aattgaaagt gtttgtgggt ggcgagcaca ctcacgctgc acaacaacca
     4561 gaagtacttg atatttcagg tcttatctaa gggaaaggac gtaatctaaa tggcacaagc
     4621 acaatacaca ggtactggtc gtcgtaaaaa cgcggttgca cgcgtacgtt tggtcccagg
     4681 tactggtaaa atcacagtaa acaaaaaaga tgtagaagag tacatcccac acgctgacct
     4741 tcgtttggtt atcaaccaac cattcgcagt aacttcaact caaggttcat acgacgtttt
     4801 cgttaacgtg aacggtggtg gttacggtgg tcaatcaggt gcgatccgtc acggtatcgc
     4861 gcgtgcattg cttcaagtag acccagactt ccgcgattca ttgaaacgcg caggccttct
     4921 tacacgtgac gctcgtatgg ttgaacgtaa gaaaccaggt cttaagaaag cacgtaaagc
     4981 tagccagttc tctaaacgtt aattatcagc gatatatcaa cgtttcaaag cactcgcagg
     5041 gttttcccta cgggtgcttt tttctgtgct ttttacaaaa gtttgcccta aaatttgccc
     5101 taaatttgca ctactcattt ttaagatgtt gataggcgac atgaccagca gatagaggga
     5161 caatattaga agtgttgaca taggtcttag ttgtgagagt atcactatga gttaatgctt
     5221 ctgagatagc ttctaagctc attccagctt tcttagcaag tgttgctcca gtgtgtcgga
     5281 gtttatgagg tgtggcatgt gttagcttag gatgtcgctt cttaatggtc ttcattttat
     5341 tattgagata gtcagcatgc aaaggcttat tgatgtttcc tttggtatca atataagtga
     5401 agacgaactg ttcaggattc gtaataattc caaactttgc aagttcctgt ttttgttgtg
     5461 atttccaacc ttggagaagt tgaagcaagt cagttgaaat agcaaagatt gttttcttgt
     5521 tccctttggt tgatttcaca tctccatacc tatctagtgc ttggagtaat tgaatttggg
     5581 atttttcaaa atcaatgtgt ttccactgca aagcataaga ttcagatttt cggtcgccta
     5641 aaaagaaggt aagataaaat agaacataat ccttaagtga aatttttccg ctagccaaat
     5701 catcttggaa ggctgagaac cattcctgta attgctcttg tgttaggtag aggtcttcat
     5761 ctcgcctagc ttctgccaac tgg
//
LOCUS       DASGCC010000118         5743 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.118, whole genome shotgun sequence.
ACCESSION   DASGCC010000118 DASGCC010000000
VERSION     DASGCC010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5743
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.118"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(710..1804)
                     /locus_tag="U1404_001628"
     CDS             complement(710..1804)
                     /locus_tag="U1404_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5348565.1"
                     /translation="MFHFTTLFIGMDVHKESFLLCYYDMMANQFKHSTKVGPNVSYIV
                     NYVNELRRLYGQDAEVLCGYEAGCLGFTLYHQLQAHGIPCIVMAPTTVMKEGSKRVKT
                     DKKDAAQLAKALAFRSYRPVHIPTAEDEQVKEYIRMRTDHKVALKKIKQQLLAFCLRH
                     DFRYTEGRNNWTQKHVRWLHSLNPKGLYAEILTEYLLTYEKLVDQIARYDARIEQLGQ
                     SDSYQEEVSQLSCFIGVKTLTALSIVTEIGDFNRFATAQHSASYLGLTPSENSSGDKE
                     RRGAITKAGNSHVRRLLIEAAQSLAKGTIGYKSKELKRRQSGNRVEVIAYADKANERL
                     RRRYRTLVLGKNKKQNVAKVAIARELSGFI"
     gene            complement(1912..2586)
                     /locus_tag="U1404_001629"
     CDS             complement(1912..2586)
                     /locus_tag="U1404_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5348566.1"
                     /translation="MLKFIKHIASLFLFFVAYQIISGFLMVGPSLQAIPEFPAQLIEN
                     MIWICAIIGIVLGIAFTIVLWKFVYSRYTIDYSVSSSWFHKIQWPILLYIAFFIFQLL
                     VPISESQNQTLVIQFVSAYPLVSFLSVVIFAPILEELIFRGLLATYFFPKMVDMKAVG
                     IYLAVTGSLFSLVHMPTTILQFLIYFTMGLNLGWLYLIRRDIRYPIALHMLNNGISYL
                     MILFLV"
     gene            complement(2596..2913)
                     /locus_tag="U1404_001630"
     CDS             complement(2596..2913)
                     /locus_tag="U1404_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348567.1"
                     /translation="MKLFLWILVGFLFFNSLSDRKKVKQLQARVKKLQKTTKGENQMS
                     VLLKELVGSKAKIRFDEEISIACEYTILAVDEEWVKISRELAEGEIETKLVRVDNIVD
                     LSF"
     gene            complement(2923..3612)
                     /locus_tag="U1404_001631"
     CDS             complement(2923..3612)
                     /locus_tag="U1404_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5348568.1"
                     /translation="MNRLGNVKDWNVVKNWKFLLVGLAVVALNVLTQLAMFALPNFDG
                     NNLLIAAVLLLLAVVLGLILTGKLGLWKGEQKWGMVANVGFVVLAFIVMFGLKIIGGQ
                     LIMLEEGYGQTTANQEIINNSGLPTLVLFLFAVFFAPVLEELLFRGILMGRVFGKDSI
                     VGLLLSSFLFGLIHNPTNIGSWVVYGGMGLVLGLAYRISGKYTNALILHSLNNLLGFL
                     LMLLMQSLGLI"
     gene            complement(3638..3844)
                     /locus_tag="U1404_001632"
     CDS             complement(3638..3844)
                     /locus_tag="U1404_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348569.1"
                     /translation="MKENKKFISVLKIVYFVGLIGLGLYAVGYIFGEWLATGQIDLSN
                     LNILLPMVLGLPALLLFKKESDKN"
     gene            complement(3866..4624)
                     /locus_tag="U1404_001633"
     CDS             complement(3866..4624)
                     /locus_tag="U1404_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3169 family protein"
                     /protein_id="HEM5348570.1"
                     /translation="MKQGKQISTKQRWMRYSAYMLISAILGGFIGFFGVLIFKFSLPS
                     YLNLDNFLIFLRIITFLIFAGTVYFGVKANQNYKLYHSISDEDEEHVDELYKKMYRNL
                     EYATISFNVAVSLTLLNLVLGFGVTFFEDGAIMYGSIFDVVFYVILLISQIFIMKLTQ
                     KIRDYKLSAFATVKEMKDFAEAMDEGEKQANYEMSFQIVFTLNQIVLPGLYLFLFVLS
                     MLLQERQITAFLVVAFLHIYINVMQVRMIRRYFK"
     gene            complement(4621..4836)
                     /locus_tag="U1404_001634"
     CDS             complement(4621..4836)
                     /locus_tag="U1404_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5348571.1"
                     /translation="MEYVLKNRLKELRARDSLNQTELAKLAEVSRQTISLIERGEYTP
                     SVVIAMRIAQIFNENVENVFQLVEVGE"
     gene            complement(4849..5415)
                     /locus_tag="U1404_001635"
     CDS             complement(4849..5415)
                     /locus_tag="U1404_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM5348572.1"
                     /translation="MEAKKKLFEVNIMKNKKFVWGLNILAVALILPFAFVFGMIGSWL
                     IANGSQYWELSVSEVWLLFPLYILLIVVHEAIHGIFFKVFCPENPVKYGFKWKSGMAY
                     ATSPGSLYNRMQMLVISLAPFVVISLGLTMLAGFGMMNTTLYFMLATMHAASCAGDFY
                     YVYLLLVKFAKENIAVEDTETGLIIYQA"
BASE COUNT         1870 a         1290 c          924 g         1659 t
ORIGIN      
        1 ttatcaatca ttagtaaaca ttttacatgt cattattcat atattatcca aaattggcta
       61 tactacattc acgaaagtaa accatacaaa atgggagcgg gaagtgatac gactgactcc
      121 ctcactacca atttgccacc tcaaacaatc tccagaatat tcgaaaactc aaccactccg
      181 ccgagatgtt aataggaact caaacattaa catttttacc ctgtgtttac tactctaaat
      241 aaaaaatacc ctattgcaac gtgcaacaag gtaccatcta tctcaatcat atattctgta
      301 attcatttta tatagtcata tcagtttatc tttgattact tcgacgagcg aggaaacgtc
      361 gtttccttat ttccaaccta gaacagcttt taggctattc tagcaacctg tagctttggt
      421 tacctacagg tcaatggttc tgccgcgacg cgagtccgac tctctataag cgtggattac
      481 aattgtgcca cttagtcgtt tcgtagatga ctcaaacctt gaagtcctaa actccttcaa
      541 gatactttcc attcaaacat tatttcaatc cttatttctg tccaaattca cccagtgatt
      601 tgggatagaa atagggattc ctcatcgctc tgcgatgata aaacttaatt gtcaaaagtg
      661 tacatgaaaa taagcgctaa cttcaagcta ttcttcctgt catcatcccc taaataaaac
      721 cagataattc ccgtgcaata gctactttag caacattttg tttcttattt tttcctagaa
      781 caagtgtgcg ataacgtctt cttaagcgtt cattagcctt atccgcataa gcaatcacct
      841 ccactcggtt tccactttgt ctccttttca attctttgga tttataccca atcgttccct
      901 tggccaatga ttgtgcagct tctatcagaa gtcgtctcac atggctattc ccagctttgg
      961 tgatagcacc tcttctctcc ttgtcgccac tagagttttc gctaggagtc agcccaagat
     1021 aagaagcaga atgttgagct gtcgcaaagc ggttaaaatc accgatttct gtcacaatgg
     1081 aaagagcggt tagtgttttg acgccaataa agcaagaaag ctgagagacc tcctcttgat
     1141 aactgtcgct ttgacccagt tgctcaattc gcgcatcata ccgtgctatt tgatctacta
     1201 atttctcata ggtcaatagg tattctgtca aaatctctgc gtaaagtccc ttaggattta
     1261 gggaatggag ccagcggaca tgtttctgtg tccaattatt tcttccctcg gtatagcgaa
     1321 aatcatgtcg gagacagaag gcaagaagtt gttgtttgat tttcttcaga gccactttgt
     1381 ggtctgttct catgcggata tattctttga cttgttcatc ctcagcagta ggaatatgaa
     1441 caggccgata gctacgaaag gccagagctt ttgcgagctg agctgcatct ttcttatcag
     1501 tcttgacacg cttagatcct tccttcatca ccgttgtagg cgccatcacg atacagggaa
     1561 tcccgtgagc ttgtagctgg tgatataggg taaatccaag acatccggct tcgtagccac
     1621 ataacacttc tgcatcttga ccatataaac gacgaagctc attcacatag ttcacaatat
     1681 agctaacatt tggaccaact ttagtgctat gtttgaattg attcgccatc atatcataat
     1741 agcagagtaa aaaactttct ttgtgaacat ccattccgat gaaaagtgtg gtaaaatgaa
     1801 acatataaga cctccaattg agtgtggtaa ttcctgttag aagttgattg ttttttattc
     1861 tagtgtacag gtaaatccac gaattctcaa ctgggggtct ttacatattg tctataccaa
     1921 aaatagaatc atcaaatagg aaattccatt atttaacata tgtagcgcaa tcggatagcg
     1981 aatatctcgt ctaattaaat agagccaacc aagattgaga cccatagtga aataaattaa
     2041 aaactgcaga atggttgttg gcatatggac caaactaaac aaagaacccg ttacagcaag
     2101 atagattcca acagccttca tatctaccat tttagggaag aaataggtcg ccaacaaacc
     2161 tctaaaaatc aattcctcta aaatcggagc aaagattacg actgataaaa atgaaaccaa
     2221 ggggtaggca gacacaaatt ggatgaccaa ggtttgattt tgactttcag atataggtac
     2281 caaaagttgg aagatgaaaa atgcaatata gagcaaaata ggccattgaa tcttatggaa
     2341 ccatgatgaa gatacactat agtcaatggt ataccgagaa tacacaaatt tccataatac
     2401 aattgtaaat gcaattccga gaacaatgcc aataatcgca caaatccaaa tcatattctc
     2461 aatcaattga gctggaaatt ctggaatagc ttgtaatgac ggccctacca tcaaaaaccc
     2521 agaaataatt tgataagcaa caaaaaataa aaacaatgat gcaatgtgtt ttataaattt
     2581 taacatactc cctccctaaa aactcaaatc aacaatatta tcaactcgta ccaacttggt
     2641 ttcaatctct ccttccgcta attcacgaga aattttaacc cattcctcat caactgccaa
     2701 aatggtgtat tcacaagcaa tagaaatttc ctcatcaaag cggattttgg ccttacttcc
     2761 gaccaattct ttcaataaaa ctgacatctg attttctcct tttgtagttt tctgcaactt
     2821 ttttacccta gcttgcaact gcttcacttt tttcctatct gatagagaat tgaaaaatag
     2881 aaatcctact agaatccata aaaatagttt catcgtatcc tcctatatca agcccagact
     2941 ctgcatcagt agcatcaaca aaaatccaag aagattattc agactgtgta gaataagtgc
     3001 attggtatat ttgccagaaa tacgataggc gagtcccagg accaggccca tacctccgta
     3061 gacaacccaa gatccgatat tggttggatt gtgaataagt ccaaacaaaa aacttgatag
     3121 caataatccc acaatcgaat ccttaccaaa tactctcccc ataagaatcc ctctgaaaag
     3181 cagttcctcc aaaactggag caaagaaaac tgcaaagaga aacaaaacta aggttggtaa
     3241 gcctgaattg ttgatgattt cctgattggc agtcgtttga ccatatccct cttccaacat
     3301 aatcaattgc ccaccaatta ttttcagacc aaacataacg ataaaagcga ggactacaaa
     3361 cccaacattc gcaaccatcc cccatttctg ctcacctttc catagaccta atttaccagt
     3421 caagataaga ccaagcacca cggctaacaa taaaagaact gcagcaatca gtagattatt
     3481 accgtcaaaa tttggtaggg caaacatggc caactgggtc aatacattca gtgcaacgac
     3541 tgccagtccc actaagagaa acttccaatt tttaaccaca ttccaatctt tgacatttcc
     3601 aagtctattc atagcaatct ccttcacata cactaaatca attcttatca ctttcttttt
     3661 tgaacaatag cagagctggc aagcccaaaa ccatcggcaa gaggatattc agattagaca
     3721 aatcaatctg cccagtagcc agccattctc cgaaaatata gccaactgcg tacagaccga
     3781 gaccgattaa ccccacgaag taaacaattt ttagaaccga tataaacttt ttattctctt
     3841 tcataatcac taccaaaacc ttcccttatt taaaataccg acggatcatg cgaacctgca
     3901 tcacattgat ataaatgtgc aaaaacgcca caactagaaa tgccgtaatt tgtcgttcct
     3961 gcaatagcat gctaagtaca aataggaata gatacaaacc tggtaacacg atttgattca
     4021 aagtgaagac gatttggaaa ctcatttcgt agtttgcttg tttctcacct tcgtccatcg
     4081 cctcagcaaa gtccttcatt tcttttaccg tagcaaaagc ggataactta tagtcacgaa
     4141 ttttctgagt taatttcatg ataaaaatct gagaaatgag aagaatgaca tagaaaacta
     4201 catcaaaaat tgacccgtac atgatcgccc cgtcttcgaa gaaggtaaca ccaaatccta
     4261 gaaccaaatt taacaatgtc aatgatacag caacattgaa tgaaatggtc gcgtactcta
     4321 ggttacgata cattttctta tatagttcat caacatgttc ctcatcctca tctgaaatgg
     4381 aatgataaag tttataattt tgattagctt taacaccaaa atatacggtt ccagcgaaaa
     4441 ttaaaaatgt aataatcctc aaaaaaatta gaaaattatc taaattgaga taagaaggta
     4501 ggctgaattt aaagattaat actccaaaga aaccgataaa gccacccaaa attgctgaaa
     4561 tcagcatata cgctgaatat ctcatccatc tttgtttcgt tgaaatttgt ttcccctgtt
     4621 tcattctcct acctccacta attgaaaaac attctccaca ttttcgttaa aaatttgagc
     4681 aattcgcatg gcaatgacca ccgagggcgt gtactccccc cgctctatca gactaatggt
     4741 ctgccgtgat acttctgcta actttgccaa ctcagtctgg ttgaggctat ctcgtgcccg
     4801 caactccttg agccgatttt ttaagacata ttccatgatg tttcctttct aggcttggta
     4861 gataatcaag cctgtttctg tgtcttcgac agctatattt tccttggcaa acttgaccaa
     4921 taagagatag acataataga aatcgcctgc acaagaggcc gcatgcatgg ttgccagcat
     4981 gaagtaaaga gtggtattca tcatcccaaa tcctgctaac atggtcaagc ccaaactaat
     5041 cacaacaaag ggagccaagc tgattactag catttgcatc cgattgtaga gcgaacctgg
     5101 actggtcgca taggccatac ccgatttcca tttaaacccg tatttgacag gattttcagg
     5161 acaaaaaact ttgaagaaga tgccgtggat agcctcatgc acaactatta aaagaatata
     5221 gagtgggaaa agcaaccata cctccgacac gctcagttcc cagtattgcg aaccgttagc
     5281 tatcaaccaa ctgcctatca ttccaaatac gaaggcaaat ggaagaatga gtgccacagc
     5341 aagaatattc aatccccaca caaacttctt atttttcatg atattgactt caaataattt
     5401 ctttttcgct tccatgtttc ttctccttca tttgcctaca agctagacta aactatatag
     5461 tcctagagca actccaatca gtaagccgat aaataattgc ccctgcaatc ataatcgcta
     5521 ccatatctgc tgaaatatta cgtttcatgg tctatctcct attacttatc tccttttttt
     5581 ctccatttgt aaacttgctt caatacaagt aattgaagca attagagtag tcattagagc
     5641 tgtatccata tcgctccatc ccagcaaatc aaaaaggaga atgtaagcca ataatagaat
     5701 ggaccctatt tcgactgcac gcgcaatggt tgttcctgta att
//
LOCUS       DASGCC010000119         5606 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.119, whole genome shotgun sequence.
ACCESSION   DASGCC010000119 DASGCC010000000
VERSION     DASGCC010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5606
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.119"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(7..1290)
                     /locus_tag="U1404_001636"
     CDS             complement(7..1290)
                     /locus_tag="U1404_001636"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEM5348573.1"
                     /translation="MKLQKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIF
                     EHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLRPEGTAPVVRSYVENKLFAPEVQK
                     PAKFYYMGPMFRYERPQAGRLRQFHQIGVECFGSNNPATDVETIAMAYHFFEELGIKD
                     IRLHLNSLGNPESRAAYRQALIDYLTPLKDQLSKDSQRRLEENPLRVLDSKEKEDKIA
                     VENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVIDTNMVRGLDYYNHTIFEFMTEVG
                     GNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLILVLEKQGIELPLDTQLDIYIA
                     VLGQEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIES
                     GQVVVKNNQTRSQVETSLEALKTDFASILEELEKQ"
     gene            complement(1556..2257)
                     /locus_tag="U1404_001637"
     CDS             complement(1556..2257)
                     /locus_tag="U1404_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348574.1"
                     /translation="MKTVGKFFAKKLASLMVLLLVLGLGIIWFRNSIFAWFQGIHKVQ
                     YEFVIKKFEAESKLVVAGAEVATTANQTFENNKLEEWPDWTEPITKLFVGREMSVDIP
                     VQTEFKLVLEGIEQSDVHIQNNTLTFKQPVLVEVDSQQHGQIKISNNSNGLLDKAVDA
                     FTSGQKAQEFLNEKSQEAIYKTSEEVLNDAERQEKVAAFAETALENLLNLNSEEKLEV
                     EIEVSDLNFQIVDKK"
     gene            2553..2735
                     /gene="rpmF"
                     /locus_tag="U1404_001638"
     CDS             2553..2735
                     /gene="rpmF"
                     /locus_tag="U1404_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM5348575.1"
                     /translation="MAVPARRTSKAKKNKRRTHYKVAAPTVKFDETTGDYSRSHRVSL
                     KGYYKGRKIAKAASAE"
     gene            2751..2900
                     /gene="rpmG"
                     /locus_tag="U1404_001639"
     CDS             2751..2900
                     /gene="rpmG"
                     /locus_tag="U1404_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5348576.1"
                     /translation="MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVI
                     FTEVK"
     gene            complement(3372..4547)
                     /locus_tag="U1404_001640"
                     /pseudo
     CDS             complement(3372..4547)
                     /locus_tag="U1404_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636218.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
     gene            complement(4695..5411)
                     /locus_tag="U1404_001641"
                     /pseudo
     CDS             complement(4695..5411)
                     /locus_tag="U1404_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921854.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
BASE COUNT         1502 a         1248 c         1093 g         1763 t
ORIGIN      
        1 tttagactac tgcttctcca attcttctaa aatacttgca aaatctgttt taagtgcttc
       61 caagcttgtt tcaacttgac ttcttgtctg gttatttttg accacaacct gtccagattc
      121 aatttcgcta ccacccaggg taatgatagc cttggctcca aagacatctg ctgacttaaa
      181 ctgagccttg agcttgcggt ccagatagtc acgttctgca cgaaaacctt gcttgcgaat
      241 ggcttgaaca agatcaagcg ctccgccatt ggcctcctga cccaaaaccg cgatgtaaat
      301 atctaactgg gtgtcgagag ggagctcgat gccttgcttt tcaaggacta ggatgaggcg
      361 ctcaatgccc atgccaaagc caaaagctgg cgtttctggt ccaccaaagt aggtcaccaa
      421 gccatcataa cggccaccgg cacagatggt caggtcattg ccacctacct cggtcataaa
      481 ctcgaaaata gtatggttat agtagtccaa accacgcacc atgttggtgt caatcacata
      541 agcaatgcct aagctgtcca acatagtctt aaccgcttca aagtgagcag tactttcttc
      601 atctagatag tccaagatgg acggtgcatt ttccacagcg atcttgtctt ctttttcctt
      661 agaatccaac acacgcaaag gattttcttc caagcggcgc tggctatcct tggaaagctg
      721 gtccttgagt ggcgtcaggt agtcaatcaa ggcctggcga taagcggcac ggctctctgg
      781 attgcccaga ctgttgaggt ggaggcgaat gtccttgatc cccagctcct caaagaagtg
      841 gtaggccata gcaatggttt ctacgtctgt cgctgggtta ttagaaccaa aacactccac
      901 accaatctga tggaactggc gtagacgacc agcctgcgga cgctcatagc ggaacattgg
      961 acccatgtaa tagaacttag caggtttttg tacttctgga gcaaacagct tgttctctac
     1021 ataggagcga acaaccggtg ccgtcccttc tggacggagg gtgatatgac gctctccctt
     1081 gtcatagaaa tcgtacatct ccttggtcac aatgtccgtc gtatcgccaa ccgaacggct
     1141 gatcacctcg taatgctcaa agattggtgt gcgaatctca gcgtaattgt actgtttgaa
     1201 aatgctgcgg gtaaagtttt ccacgtactg ccatttggca gaatcctgcg gtagtaaatc
     1261 ctgtgttccc tttggttttt gtaatttcat ggactttctc atttctctaa atattgccct
     1321 ttattttatc atattttggt cttttttgga aatggcagag cagacaaaaa gggagtggga
     1381 aagaactcga ccagtctaaa aagagttcgt cttcccaccc cccgcacagt tgattaggtc
     1441 agatttggag tgtgaaacac gaacaaatct gccaatcaac cactgcgctg agatgttgac
     1501 acgaactctg agaagcgagg atggactttc tgcccagcct ccttgtttaa aaaaactatt
     1561 tcttatccac aatctggaaa ttcaagtcgc tcacttctat ctcaacctca agtttttctt
     1621 cggagttcag attgaggagg ttttctaaag ccgtttctgc aaaagcagcg actttttcct
     1681 gacgttctgc atcattcaag acttcctcac ttgtcttgta aatggcttct tgggattttt
     1741 catttagaaa ttcctgagcc ttttgtccag aggtgaaagc atctactgcc ttatctaaaa
     1801 gaccattgct attattgcta attttgattt gaccatgctg ttgagaatca acttcgacaa
     1861 ggacaggttg cttgaatgtc aaggtgttgt tttgaatgtg aacatctgac tgctcaattc
     1921 cttccaagac cagtttgaac tccgtctgga caggaatatc tacagacatt tcccgtccaa
     1981 caaagagctt ggtaataggc tctgtccagt ctggccattc ttctaattta ttgttttcaa
     2041 aggtctggtt ggcagtggtt gctacctcag ctcctgccac aaccagttta ctttccgctt
     2101 caaacttctt gataacaaat tcatactgaa ccttgtggat accttggaac caagcaaaaa
     2161 tactatttct aaaccagata atgcctagac ctaaaaccag tagcaagacc ataaggctag
     2221 ccaacttttt cgcgaaaaac tttccaactg tcttcataca gttctccttc atatttgaat
     2281 tatcggaact tgtcctacaa ccattatata tatatatgct gtcaagtatt tttggcattt
     2341 ttttgaacat tttagaaaac tcactttgag aagttaggag gataaaaatc tgacaaattt
     2401 gacaaatttt gacaaatttt ttcaaaaaat ctgtcaagta actttacttt acaaaaaatt
     2461 tttgttatac tgttaaagtt gacgaaagtc atacgcacta tttttagatt aaaaaagggc
     2521 ttggccctga catttaatgg aggaagaaag aaatggcagt acctgcacgt cgcacttcaa
     2581 aagcgaagaa aaacaaacgt cgtactcact ataaagtagc agctccaact gtgaaatttg
     2641 atgaaactac tggagattac tcacgttcac accgtgtatc tttgaaagga tactacaaag
     2701 gacgtaaaat tgccaaggct gcttcagctg aataatagaa gggagatacc atgcgcgtaa
     2761 atattacact tgaacacaaa gaatctggtg agcgtttgta ccttacttca aaaaacaaac
     2821 gtaacactcc agaccgtctt caattgaaaa aatactcacc aaaattgcgt aagcacgtga
     2881 tttttactga ggtaaaataa gacaacatac agaaagccta tgaaatcaac gtttcaaagg
     2941 cttttttctt ttgtttttga caaaataact gaattttaac tgattaaaat aaatcaaatg
     3001 ataatttctg ctaaatctag catagcctgt tcaatcttac gttttccttt ttgtattaca
     3061 tgaagataga ttttcactat ctccttacca tcctcagaat gtcctacaaa ttctcgaata
     3121 acattcaaac tagtattgat aaaacaaaat atagaaccaa ctccttcata tcattgcaag
     3181 agataaattt caatcttgtc tttgtgtctt gaccttacaa gaaaagcacc tcaaaaacta
     3241 gagttaacct ctaacttttg gggtgcagtt cagattttgg aacgttttct atttacaact
     3301 gttctaaatt ttcttagtcc atggtaaata agccttattg gtgtaccaaa aactatagta
     3361 ttagcgtaaa atcactcctc ttctctttgc ctgtgttgtt tgaaaagata caaacttgat
     3421 gcaagggcag ctagagcacc acctagccat actagggtat tacttgtttc acccgtattt
     3481 ggtaaagtct ctttttgtat tcctaccttt ggagccattg aaactccaga ttccgttttc
     3541 ttaacttcgg attgaagcac ctccggatgg ataatattgg gtttattaac ctcaggttga
     3601 cccttttctg gttggattcc ggcgggtttc tcaacttctg ggtgcgcaac ttccggagtt
     3661 tttggcgtct taacgtctgg aacttttgag gttggtggtg ttactttcgg aacctcaact
     3721 tctggagact taggagcagg aaggtgaact tctggaactt tcgaggtcgg tggtgttact
     3781 ttcggaacct caacgcccgg agtttttggt ggcagaggcg cctattttgg cgtcttaacg
     3841 tctggaactt tgggtgctgg ggacattact ttgggtggct cagtttccgg agacttagga
     3901 gcaggaaggt gaacttctgg aaccttcggt tttggctgct caactttcgg tagctcagct
     3961 tctggaactt ttgaggtcgg tggaattact ttcggaacct caacttctgg gacttttggc
     4021 gtcggtggta agacttctgg tcgttcagtt tcaggagctt ttggtgactc aatcacagga
     4081 gcatctgtat cagggtactc aacttttggc gtcttaacat ctggaacctt cggtgtcgga
     4141 ggcattactt ttggaacctc aacttccgga gtttttggtg gcagaggcgc ctctttgggc
     4201 gtcttaacgt ctggaacttt gggtgctgga ggcattactt ttggtggcac agattccgga
     4261 gccttaggag caggcagttg aacttcaggg tcctttggtt ttggttgctc aacttttgga
     4321 acatctgcct ttggtacaac tatatccgaa gtcctatctc cccgcggttc aggagtcctg
     4381 tcgctttctg gagatgaatc tccgataata gtaatccctt cattatttgg cttagcactt
     4441 tccgatacct ttaatctcaa accagcagca gaagtaatct catctctgga gaaaaatatt
     4501 cgctctttaa aattcttcac cacagctaaa accgggaaag tctgcatttc tcgatttgtc
     4561 acctgtgccg tcagttcata tgtcgctttt tctttagcaa cggaatctcg ctgtacttgt
     4621 agaaaataga cgctggaact ttcttccttc catttttcta gctctcctcc tacacgtcca
     4681 acagaccaac cccactgact ttcaaaacta cgctcatcat tattagcatt tttttctcta
     4741 ctaaaaaagc gatacggctg cccgccagaa tttgcctcac tattgacatc cttagggaac
     4801 ttattgaaaa tatcctcttc agactggcta tcaataattt tggttaattg taagcctttt
     4861 agaagaataa agtaatagcc actcccctct ccactaaagg tccaattttt tctatcaaaa
     4921 gttactttcc acttaatttc gtcattatct gccgatattt tttctataga tactgccttc
     4981 ctaatctgtt caccttgatg agtgtcaaat ctatgataat tcgattcttg aatcagtttc
     5041 tcttcggctt gttgaatatt tgaatctgcc gttgaaattt ccgcccctga cacacttaat
     5101 gattgagatg gcgcatccgg atccgtcgct acctgcgtag cactttcttc tctcgtagaa
     5161 tcgctagaaa ctagtttttc ttctggagcc tgttcatcac cttcttctga cgtaggtaat
     5221 tggttatccg taggtgaaat tccatcgact gcggtcgcag tttgattttc tgagctaacc
     5281 gtagcagatt cagtaggtat ttcttgaaga ttgcctgttt ctgcgcttac agatgatacg
     5341 tgacatatta gaaaaccacc tagtacagct gtactaagca atagatttgt cacaactttt
     5401 tgtttgctca taatgtgctc ctttactcta tttacttcaa tttactaaga acctgtattt
     5461 acaggttagc actcccatct aaggcatttt taagctactc atcgttcgtt ttttcaaaat
     5521 acagccagca ttccctcaaa aaattaactt gattagcgaa aaactatctc ttacataaaa
     5581 gctctttact tgtaagtaca tgttct
//
LOCUS       DASGCC010000120         5542 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.120, whole genome shotgun sequence.
ACCESSION   DASGCC010000120 DASGCC010000000
VERSION     DASGCC010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5542
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.120"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            23..1426
                     /locus_tag="U1404_001642"
     CDS             23..1426
                     /locus_tag="U1404_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000388528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HEM5348577.1"
                     /translation="MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGH
                     LSWDVDFLLAKILESIRLANTSYKILSIGIDTWGVDFGLIDKEGKLLSQPVHYRDERT
                     KGVLKEISEITELEKLYSETGNQLMEINTLFQLFKVRQEFPNSFYSTNKILLMPDLFN
                     YLLTGKFATEKSIASTTQLFDPRSQKWNQNILKLFELDSSLLPEIVSEGNVLGRIKEE
                     YGLGGIPVVNVCSHDTASAIVSVPKTGDSLFISSGTWSLVGVELSSPILCTESFSYGF
                     TNEVGKDGVITFLKNCTGLWIIEELRRSFERRGKAYSFGDIKTMVEKDKGNLPLIDTE
                     STEFATESDMYKTLTEYLEHRYGTREWTDGQLFKIVYESLAETYKKTIELLEELTHKV
                     YKRIYVIGGGARASYFNQMIADRTGKEVLTGSTEATAVGNIVVQLIAIGQLKGMEEAH
                     HVIEEFLQLESYYSQKN"
     gene            1537..2175
                     /locus_tag="U1404_001643"
     CDS             1537..2175
                     /locus_tag="U1404_001643"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001286141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HEM5348578.1"
                     /translation="MSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSG
                     IDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVL
                     ACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKEMEGRRAVLLANHGILAG
                     AQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMELMAEKFKTYGQRK"
     gene            2187..2627
                     /locus_tag="U1404_001644"
     CDS             2187..2627
                     /locus_tag="U1404_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000912112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RbsD/FucU family protein"
                     /protein_id="HEM5348579.1"
                     /translation="MLKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASCANKLIR
                     CDGVNIPDLLDSILYLMPLDGYVNSSIQFMNVVSGDDIPKIWGTYRQMIEGHGTDLKT
                     ITYLRREDFYERSKKAYAIVATGETSLYANIILKKGVVVERENV"
     gene            2620..3051
                     /locus_tag="U1404_001645"
     CDS             2620..3051
                     /locus_tag="U1404_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5348580.1"
                     /translation="MFNRGILVASHGNFASGSLMTAEMFVGETTNDRVRTLGLMPGEN
                     IVEFEHYFKNQVDELLDSNQEVIVLTDLIGGSPNNVALSQFLNLDSVDIVTGFNIPLL
                     VELISSYDSKINLEEIVHNAQNSLFNVKQQLNVEEEEDLCL"
     gene            3042..3512
                     /locus_tag="U1404_001646"
     CDS             3042..3512
                     /locus_tag="U1404_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000020992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5348581.1"
                     /translation="MSIEFVRIDDRLVHGQVVTTWLKKYDIEQVIIVNDRISEDKTRQ
                     SILKISAPVGLKIVFFSVKRFVEVLNSVPIKKRTMLIYTNPKDVYDSIVGNLKLEYLN
                     VGQMSKTEKNEKVTGGVALGEEDKYYFKKIVDKGTRVEIQMVPNDKVTMLEKFL"
     gene            3535..4308
                     /locus_tag="U1404_001647"
     CDS             3535..4308
                     /locus_tag="U1404_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000899624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5348582.1"
                     /translation="MPFTQALLVTLVGIIATIDYNGPLFMIHRPLVTSAMVGLVLGDF
                     TQGVLIGSALELTWLGVTGIGGYTPPDTISGAIIGTAFGILSGQGETAGIAIAVPIAV
                     ATQQLDVLAKTLDVYFVKKADNDAKNGDYSKIGFYHYSSLVLITLFKIVPIFLAIMLG
                     GEYVADLFAKVPPIVMQGLNSAGALLPSIGFGMLLNMMLKKNMWVFLLIGFICSVYGG
                     MSTIGISLVGIAVAYFYDMIGSKPQETTSNSDVEEDLDL"
     gene            4305..5105
                     /locus_tag="U1404_001648"
     CDS             4305..5105
                     /locus_tag="U1404_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5348583.1"
                     /translation="MMNNKVTKVELKKVFKRSFMYGSSWNYERMQNLGFLYTILPVLK
                     KLYPDKDLASPAMKRHLEFFNTHQTAAPFILGVTSAMEEQEGNEGADSITGIKVGLMG
                     PLAGLGDSLFWLTLVPICFSIGASYSKDGGALGIFIALMLFNVINIPVKYFGLKYGYT
                     KGSSLIQENNTKGTLNRITSMATALGLVLVGGLIPSMVGINFGLEFKQGELVISVQEM
                     ITKLIPGFIPMALTLLMCKLIRKGKNPVVLIFSVMAIGVILVVLGILK"
     gene            5163..>5542
                     /locus_tag="U1404_001649"
     CDS             5163..>5542
                     /locus_tag="U1404_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000780629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase N-terminal domain-containing
                     protein"
                     /protein_id="HEM5348584.1"
                     /translation="MKLWYKKAASNWNEALPIGNGHLGGMIYGSAVKECIQLNDETIW
                     YRGKSDRNNPDSLLHLKKVREYLLDGEIQKAEELIKLTMFATPRDQSHYELLGELYIE
                     HIDIQPSALSLYERELDLDTAISNV"
BASE COUNT         1807 a          728 c         1215 g         1792 t
ORIGIN      
        1 gggtattgga gagggttaat aaatggaagc ggttttagca atagatttag gtgcaacttc
       61 tggaagagca atcgttggtt acctttctga aaataaacta gtaatggaag aaataaatcg
      121 cttttctaat ctacctatta gagtaaaagg gcatttatct tgggatgttg actttctact
      181 agctaaaatt cttgaaagca tccgcttggc taatactagt tacaagattt tatctatcgg
      241 tattgataca tggggtgttg attttggact tattgataag gaaggtaagc tgttatcaca
      301 acctgttcat tatcgtgatg aaagaacaaa gggagtgtta aaggaaatat ctgaaattac
      361 tgaattagaa aaactgtatt cagagacagg aaatcagctt atggagatta acaccttgtt
      421 ccaactcttt aaggtacgac aagaatttcc taattcgttt tatagtacga ataagattct
      481 tttaatgcca gatttgttta attatctgtt gacaggtaag tttgctacag aaaaaagtat
      541 tgcttcaaca actcaactat ttgatcctag gagtcaaaaa tggaatcaga atattttaaa
      601 actatttgaa ttagattcat ctttacttcc tgaaattgtt tcagaaggaa atgtccttgg
      661 taggattaaa gaggaatatg gtttaggcgg tattcctgtt gtgaatgttt gtagtcatga
      721 tacagctagt gcgattgtat cagttcctaa gacgggagat agtttgttta tttcatcagg
      781 aacttggtct ttggttggag tggagctttc ttcacctatt ctttgtaccg aatcgtttag
      841 ttatggattt acaaatgaag tcgggaaaga tggagtgatt acatttctga agaattgtac
      901 agggttgtgg atcatagagg aactaagacg ttcatttgaa cgaagaggga aagcctattc
      961 ttttggtgat ataaaaacaa tggtggagaa agacaaagga aatcttcctc tgattgatac
     1021 tgaatcaact gaatttgcaa cagaatctga catgtacaag actttgacag aatatctaga
     1081 gcatcgttat ggtactagag agtggacaga tggacaacta tttaagatag tttatgaaag
     1141 tctagctgaa acgtataaga aaacgataga gttactagaa gaactaactc ataaggttta
     1201 taagagaata tatgtgattg gaggaggtgc tagagcaagt tactttaatc aaatgattgc
     1261 tgatagaact ggtaaagagg ttcttacagg ttcaactgag gctacagcgg tagggaatat
     1321 tgttgtgcag ctcatagcaa taggacaatt aaaagggatg gaagaagctc accatgttat
     1381 tgaagagttt ctacaattag agagttatta ctcccaaaag aattagaaag attgagagtt
     1441 tgtaaatttg cctccctctt cttagctttt gtgcaagaag aggggataat tggtgaattg
     1501 gaaaaacttt agtgttttga tatgaggagg acaaggatgt cagatgtaaa acaagaatta
     1561 attaaatatg gtaagaagtt agtagaaaca gatttgacga aaggaacagg tggaaatctc
     1621 agcgttttcg atcgtgaaaa acaattgatg gcaattaccc cgtcgggtat tgatttcttt
     1681 gaaatcaaag aatccgatat tgtagtgatg gacattaatg gaaatgttgt agagggagaa
     1741 cgcttaccat ctagcgagtg gtatatgcac ttgattcaat atcaaactcg tgatgatatc
     1801 gatgcaatta tccatgctca tacaacttat gcaacagtat tagcttgtct cagagaacca
     1861 cttccagcga gtcattatat gattgcagtg gcagggaaag atgttcgggt agctgagtat
     1921 gcaacatatg gtacgaaaga attagctgtt aatgcagcta aagaaatgga aggtcgtaga
     1981 gcagttttac tagcgaatca tggaatttta gcaggtgcac aaaatttatt gaatgcattt
     2041 aatattgttg aagaagttga atattgtgca aaaatttatt gtttagctaa gaattttgga
     2101 gagccagtag ttcttcctga tgaggagatg gagttaatgg cagaaaaatt taaaacatac
     2161 ggtcagagaa aatagggagg atattaatgt taaaacatat accgaaaaat atttctccag
     2221 atttattgaa gactttaatg gaaatgggac atggagatga aatagtatta gctgacgcga
     2281 attatccttc tgcctcatgt gcaaataagc taattcgttg tgatggtgta aatattcctg
     2341 atttattaga ttctattctg tatttaatgc cattagatgg ttacgtcaat agttcaattc
     2401 aatttatgaa cgttgtttcg ggggatgata ttcctaagat atggggtacc tatagacaga
     2461 tgattgaagg tcatggtaca gatcttaaaa cgattactta tcttagaaga gaagactttt
     2521 atgagcgtag taagaaagct tatgctattg ttgctacagg agaaacttca ctttatgcta
     2581 atattatcct taagaaagga gtagttgttg aaagagaaaa tgtttaatag aggaatttta
     2641 gttgctagtc atggtaattt tgctagcgga tctctcatga ccgcagaaat gtttgttggt
     2701 gagacaacaa atgatagagt taggacatta ggtttgatgc ctggagagaa tattgtagag
     2761 tttgagcatt attttaaaaa tcaagtggat gaactgttag actcaaatca agaggttatc
     2821 gttttgactg acttgattgg aggaagccct aataatgtgg ctttgtcaca gtttttaaat
     2881 ttggattcag ttgatattgt aacaggtttt aatattcctc tcctagtgga attaatatca
     2941 agttatgatt caaaaatcaa tttagaagaa attgttcaca atgctcaaaa tagtttgttt
     3001 aatgttaaac aacaacttaa cgtagaggag gaagaggatt tatgtctata gagtttgttc
     3061 gtattgatga ccgtctggta catggtcaag ttgtaactac gtggctaaaa aagtatgata
     3121 ttgagcaagt tatcattgtt aatgatcgca tctcagaaga taaaacacga caatctattt
     3181 taaagatttc tgcaccggta ggtttaaaaa ttgttttctt tagtgtaaaa cggtttgtgg
     3241 aagttttaaa ctctgtgcca ataaaaaaga gaacaatgtt gatatatacc aatccaaaag
     3301 atgtgtatga ctctattgtg ggaaatttaa aattggagta cctcaatgta ggacagatga
     3361 gtaaaacgga gaaaaatgaa aaggtaactg gaggtgtagc tctaggtgaa gaagacaaat
     3421 attattttaa gaaaatagtt gataagggaa cgagagttga aattcaaatg gttcccaatg
     3481 ataaagttac aatgttggaa aaatttttat aaataattta aggaggtaca gtatatgcca
     3541 ttcacacaag cattactggt gacattagtt gggattattg ccactattga ctataatgga
     3601 ccgttattta tgattcaccg tccgttagtt acaagtgcaa tggttggctt agtcttagga
     3661 gatttcaccc aaggtgttct tattggttca gctcttgaat taacttggct cggtgtaaca
     3721 ggtattggag gctacactcc accagatact atttcaggtg cgattattgg tactgcattt
     3781 ggtattttat ctggacaagg agaaactgct ggtatcgcta tagcggttcc aattgcagtt
     3841 gctacccaac agttggatgt tcttgcaaaa actttagatg tttattttgt gaaaaaagct
     3901 gataatgatg ctaaaaacgg agattactca aagattggtt tttatcatta ttcaagtttg
     3961 gttttaatca cgttgtttaa aattgtgcca attttcctag ctattatgct tggaggggaa
     4021 tatgtggcag acttgtttgc taaggttcca ccaatcgtta tgcagggact taactctgca
     4081 ggtgctttac taccttcaat tggttttggt atgcttttaa atatgatgct caagaaaaat
     4141 atgtgggtat tcttgttgat tggattcatt tgttctgtgt atggaggaat gtcaaccatt
     4201 gggatctcac tagttggtat tgcggtagca tacttctacg atatgattgg aagtaaacca
     4261 caagaaacaa cttcaaatag tgatgttgag gaggatcttg atctatgatg aataataaag
     4321 taactaaagt tgaacttaaa aaagttttca aacgaagttt tatgtatggt tcttcatgga
     4381 actatgagag aatgcagaac ctaggttttc tatatacaat tcttccagta ttgaaaaaac
     4441 tatatccaga caaagatttg gcttctcctg caatgaaacg tcaccttgag tttttcaata
     4501 ctcatcaaac agcggcacca tttattcttg gagttacttc cgctatggaa gaacaagaag
     4561 gaaatgaagg tgcagattca attactggta ttaaagttgg cttgatgggg ccactagctg
     4621 gcctaggaga tagtttgttc tggttgacac tagttcctat ctgttttagt attggtgcgt
     4681 cttattctaa agacggcggt gctttaggta tctttatcgc cttaatgttg tttaatgtta
     4741 ttaatattcc tgttaaatat ttcggtttga aatatggcta tactaagggt tctagtctta
     4801 tccaagaaaa taatacaaaa gggacattga atcgcattac gagtatggca acagcattag
     4861 gtctagtact agttggtggt ttgattccat caatggttgg tattaatttt ggattagaat
     4921 ttaagcaggg agaacttgtt atttctgttc aagaaatgat tacaaaatta atcccaggat
     4981 ttatccctat ggctttaact ttattaatgt gtaaattaat tagaaaagga aagaatccgg
     5041 ttgtactaat ctttagtgtt atggctattg gagttatcct agttgtttta ggaattttga
     5101 agtagtagaa agtgtggagg tggtatttgg gatatcaccc cattttggaa gagaggtaaa
     5161 gagtgaaatt atggtataag aaagctgcct caaattggaa tgaagccttg ccgattggga
     5221 acggtcattt aggtggtatg atttatggtt cagctgtaaa agaatgtatt caactaaatg
     5281 atgagactat ttggtataga ggaaagtcag atagaaataa tccagactca ctattgcatc
     5341 ttaaaaaagt tcgggaatac cttttagatg gagaaattca gaaagccgaa gaattgataa
     5401 aattaacaat gtttgctact ccaagagatc aaagccacta tgaattactg ggagaacttt
     5461 acattgagca tatagatatt cagccttctg ctctttcatt gtatgaaaga gagctagatt
     5521 tagatacagc tatttcgaat gt
//
LOCUS       DASGCC010000121         5478 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.121, whole genome shotgun sequence.
ACCESSION   DASGCC010000121 DASGCC010000000
VERSION     DASGCC010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5478
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.121"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(243..770)
                     /locus_tag="U1404_001650"
                     /pseudo
     CDS             complement(243..770)
                     /locus_tag="U1404_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636114.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(859..1857)
                     /locus_tag="U1404_001651"
     CDS             complement(859..1857)
                     /locus_tag="U1404_001651"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEM5348585.1"
                     /translation="MQFALMSGLVAFLATVLLIPRFITFYQAKRIEGQQMHEDVKQHQ
                     FKAGTPTMGGTVFLVVAILVSLLFATAFQLLTGGVLAILFILALYGVVGFLDDFLKIF
                     RKINEGLNPKQKLALQILGGIVFYFVHVRGAGGGELNVFGHMVHLGVLYFPFVLFWLV
                     GFSNAVNLTDGIDGLASISVVISLLAYSVIAFNEQKFDILLVCVTMIGGLLGFFVYNR
                     KPAKIFMGDVGSLALGGMLATISIALRQEWTLLLIGLVYVIETSSVMLQVSYFKYTKK
                     RFGEGRRIFRMTPFHHHLELGGLTGKAEKWSEWKVDFFLWSVGLIMSLITLAILYL"
     gene            complement(1859..4108)
                     /locus_tag="U1404_001652"
     CDS             complement(1859..4108)
                     /locus_tag="U1404_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5348586.1"
                     /translation="MPRRNNKLLRYVLKKRYVPSKNRRRVGQSLLLLTVFVFFLFLIN
                     FAYIIGTDSKFGVDLSERADAVHQREVTVQAKRGTIYDRTGIPIAEDSTTYTVYAIID
                     TEYVSELKKVLYVQSSQFSKVAEIFKKHLGMETAYVMEQLNQPELKQVYFGTLGKNIS
                     YSTMSSIQEEMKAAGIEGIAFNASPGRMYPNGNFASIFVGLANPVENKDGSHSLQGVS
                     GLEYYLNDILAGQDGKVIYEKDSQGRVLPGTEKVETETVNGQDVYTTISADLQRSLET
                     NMNTFFDNAKGRYANATLVSAKTGEILATTQRPSYDSDTKEGLGQEGLLERSLLYQEA
                     FEPGSTMKVLTVASAIDNGTFDPNAYYTNNEYVIADAKINDWTLNAGYSAVTLNYAQG
                     FSLSSNVGMTLLQQQMGDEKWLNYLTKFRFGYPTRFGMGDEAPGMVPEDNIVSIAMSS
                     FGQGISANQAQMLRSFTSIANNGIMLEPKFISALYDPNTDTARVSSKEEVGNPVSEQA
                     ADDTLRYMINVGTDPVYGTLYSHDLQGPAIQVDGYDIAVKSGTAEIASEDGQGYIKGA
                     YINSVVAMIPAEDPEFIMYVTIRQPEVLNVLSWRDIVSPTLKEAMLLKDNLNLDSPAP
                     ALARVANETEYQLPDLIGKAPGESAEELRRQLVQPVILGNGAEIKKVSVEKGSKVIAN
                     QQVLLLTNKFEEMPDLYAITKENMDIFAEWTGIEVTYKGTGSKVVDQSVEVGTALNKT
                     KKITITLGD"
     gene            complement(4108..4431)
                     /gene="ftsL"
                     /locus_tag="U1404_001653"
     CDS             complement(4108..4431)
                     /gene="ftsL"
                     /locus_tag="U1404_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEM5348587.1"
                     /translation="MLQEKRREATMRVIGDKIRTFTRVEKAFYSSIVLSGLALAIGII
                     FMQTRLLQLQSGMAKVNQDISQKQIEINDAKQAVNELTRSARLMEIAEKAGLTFNNDN
                     IGVAE"
     gene            complement(4442..5392)
                     /gene="rsmH"
                     /locus_tag="U1404_001654"
     CDS             complement(4442..5392)
                     /gene="rsmH"
                     /locus_tag="U1404_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEM5348588.1"
                     /translation="MTKEFNHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQ
                     LTDGGHLYAFDQDQTAIDHAHIRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGI
                     CYDLGVSSPQLDERERGFSYKQDAPLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYG
                     EDKFSKQIARKIEQARAVKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEV
                     NDELGAADESIQQAIDLLALDGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPD
                     DLKAPLELVNRKPILPSQEELEANNRAHSAKLRVAKKVHK"
BASE COUNT         1571 a         1271 c         1034 g         1602 t
ORIGIN      
        1 gtagaaaaaa gagttcgtca acaagtcttt atttctagtt gttgagctga aacagtctat
       61 ccccagactg tttcactccc acccccgcac agctcaaact gtctgggaga cagtttgagg
      121 ttggagatga agcgaactct gttcacatca gtcatagagg ccagatttgg agtgtaaaac
      181 acgaattgct gagatgttga cacgaaccct gagaagcgag gttggtcttt ttgcccagcc
      241 tacaaagcct gcatagctac ttttttaccg atattagctc cgactgtctt ggatacttta
      301 ttgagaagaa ccgctgaacc acctgctcca aacatgacac caatgtaggc aataatgcgg
      361 atttgaacct cttctgaaat ttccttccct tcaccaacaa ataattcatc ttcaccaaaa
      421 agataagcga tttgttgcga caaattcaag gcaaaaccaa aatactgagc tatatcagca
      481 gtacctgccg ccaccgctgt aaatggattc cccggtaaac cagctgcgaa agaaatcaaa
      541 gatgttttcg tagtcatatc attaatgatt ttttcagctt ccttacgcaa agcttttgta
      601 gtgaagaccg ctgttggtcc atccgcaata attttatcta gatatggact atctttaaaa
      661 cgagtcttca aaaattcttc ccgattgact ttaaccatag gaagttgact agcagctgtc
      721 atggtttgaa taaccactcc atataactgt tcttgattga attgttccat ttttatcctc
      781 caccaattct ctctctattc ccccccccga ccatatttgt caaggtaaaa aaacagcatt
      841 tctgctgttt ctgacatttt atagataaag aatagctagg gtaatcaagc tcatgatgag
      901 accgactgac cagaggaaaa agtcaacttt ccactcgctc catttttcag cttttccggt
      961 caaacctcca agctccaaat ggtgatgaaa aggagtcata cggaagatac gacgaccttc
     1021 tccaaagcgt tttttggtgt atttaaaata tgaaacctgc aacataacag aggacgtttc
     1081 aatgacatag accaggccga taaggaggag agtccattcc tgacggaggg caattgaaat
     1141 agttgccaac ataccgccga gagccaagct tcccacatcc cccatgaaaa tcttcgctgg
     1201 tttacggtta taaacaaaga aaccgagcaa gccaccaatc atggtcacac aaactagaag
     1261 aatatcaaat ttttgctcat tgaaggcgat gacagagtaa gctagaaggc tgataacaac
     1321 tgagatagaa gccaatccat caatgccatc tgtcaaatta actgcatttg aaaaaccgac
     1381 cagccagaac agaacaaatg ggaaatagag aactcccaaa tgtaccatgt gaccaaatac
     1441 attcaattct ccgccacctg ctcctcttac gtggacaaag tagaagacaa tacctcctaa
     1501 aatttgtaga gcaagctttt gtttaggatt aagaccttca tttattttac ggaaaatttt
     1561 taaaaagtca tccaaaaatc ctactacacc ataaagggca aggatgaaga ggatggcaag
     1621 gacaccaccc gtcaacagtt gaaaggccgt tgcaaacaac aagctgacaa gaatcgcaac
     1681 aacgagaaaa actgttcccc ccattgttgg tgtacctgcc ttaaactgat gttgtttcac
     1741 atcttcgtgc atctgttgcc cctcaatgcg tttggcttga taaaatgtaa taaatcgtgg
     1801 gattaagaga acggttgcta gaaaagctac caatcccgac ataagtgcga attgcatgtt
     1861 agtctcctaa ggttattgtt attttcttgg ttttattcaa agcggtaccg acctctacac
     1921 tttggtcgac tacttttgaa cccgttcctt tataggtcac ttcgatacca gtccattcag
     1981 caaatatatc catattctct ttggtgattg cgtacaagtc tggcatttct tcgaatttat
     2041 ttgtcaggag tagaacctgt tggttggcga ttaccttact tcctttttcg actgaaactt
     2101 ttttaatttc agcaccgttt ccaaggataa ctggttgaac taattgacgg cgaagttcct
     2161 cagccgactc gcctggtgcc ttaccaatga ggtctggcaa ttgatactct gtctcattag
     2221 cgacccgtgc caatgctggt gcaggtgaat ccagattcaa attgtctttc aacagcatcg
     2281 cttctttcaa tgtaggactg acaatgtcac gccaagacag gacatttaat acttccggtt
     2341 ggcgaatggt cacatacatg ataaattctg ggtcctcagc agggatcatg gctactacag
     2401 agttgatata ggcgccttta atgtatcctt gaccatcttc gctggcaatt tccgccgtac
     2461 ctgatttgac tgcaatatca tagccatcaa cctgaattgc aggcccctgt aagtcatgtg
     2521 agtagagtgt tccataaaca gggtcagtac cgacattaat catatagcga agtgtatcat
     2581 cggcagcttg ttcagaaact ggatttccca cttcttcttt cgaagaaact ctagctgtat
     2641 ctgtattagg atcataaaga gctgagataa atttaggctc tagcataata ccattgttcg
     2701 caatggatgt aaaactacga agcatctgtg cttggtttgc agaaatcccc tgaccaaacg
     2761 atgacatggc gatagaaaca atgttatcct ctggtaccat tcctggcgcc tcgtccccca
     2821 taccaaaacg cgttgggtag ccaaaacgga acttagtgag gtaatttagc catttttcat
     2881 ctcccatctg ttgctgcaat aaggtcatcc caacgttact ggatagggag aagccttgcg
     2941 cataattgag agtcacagct gaataacctg cattgagggt ccagtcattg attttcgcat
     3001 ctgcaataac gtactcatta ttggtataat atgcatttgg gtcaaaggtt ccgttatcga
     3061 tagctgacgc tactgttagc accttcattg ttgaaccagg ctcaaaggcc tcttgatata
     3121 aaagtgaccg ctctagcagg ccttcttgtc ccagaccttc tttggtatct gaatcatagc
     3181 ttggcctttg ggtcgtcgcc agtatttcac ccgtcttggc tgaaaccaaa gttgcattcg
     3241 catatcgccc tttggcgtta tcaaagaagg tattcatatt ggtttcaaga gaacgttgca
     3301 gatcggctga aattgtcgta tagacatcct gcccgtttac tgtctccgtt tcaacctttt
     3361 ctgtcccagg taggacacgg ccttgactat ctttctcgta gataaccttt ccatcttgac
     3421 cagctagaat atcattcaga taatattcca acccactcac accctgtaaa ctatgactac
     3481 catccttgtt ttcaaccgga ttagctaacc cgacaaaaat tgaagcaaaa tttccattcg
     3541 gatacatccg tcctggacta gcattaaagg caatcccttc aatacctgcc gccttcatct
     3601 cttcttggat tgaggacatc gtgctatagg agatattctt acctaaggtc ccaaagtata
     3661 cctgcttcag ttccggttga ttcagctgct ccataacata agctgtctcc attccgagat
     3721 gctttttaaa gatttctgct actttgctga actgagaaga ctgcacatac aaaacttttt
     3781 tcagttctga cacatattct gtgtcaatga tggcatagac tgtataggtc gttgaatctt
     3841 ctgcaatagg aattcctgta cggtcgtata tcgtcccccg tttagcttga acggtaactt
     3901 cacgctggtg taccgcatca gctctctctg acaagtccac cccaaattta ctatcagtgc
     3961 cgataatata ggcaaagttg attaaaaaga gaaaaaagac gaaaaccgtc aaaagaagta
     4021 ggctctgtcc tactcttcga cgattttttg acggaacata tcgttttttc aagacatacc
     4081 gcaagagttt attatttctt ctgggcatta ttcggctact ccaatattgt cattattaaa
     4141 agttaatcca gctttttcag caatttccat caagcgagct gaacgtgtca attcattgac
     4201 agcttgcttt gcatcgttaa tttcaatctg tttttggcta atatcttgat tgactttggc
     4261 catgccagat tgaagttgca aaagccgcgt ttgcataaag ataattccta tcgcaagggc
     4321 taatccagat aatacgatac ttgaatagaa ggctttttct acacgtgtga aggttctaat
     4381 tttatcaccg ataacccgca tagtggcttc tctacgtttt tcttgcaaca tagactctct
     4441 cctatttatg tactttctta gctacacgca gtttagctga atgcgcgcga ttatttgcct
     4501 ctaattcttc ttgactaggt aagataggct tacgattgac caattcaagt ggcgccttca
     4561 agtcatctgg aataaatggc aaaccttttg gaacatcaat cgtacttgct tctttgaaga
     4621 gttgtttggt caaacgatct tctaaagaat ggaaagtaat cacagaaatc cgtccatcca
     4681 aagccaataa gtcaatggcc tgctggatag attcgtctgc tgcccccaac tcatcgttga
     4741 cttcaatccg aatcgcttgg aaaatctgct tggcaggatg gcccttcttc ttaagttcct
     4801 tggctggctt ggcagatttg atcagctctg ccaactcagt cgttgtttca atcggcttga
     4861 ccgcacgcgc ctgttcaatc ttacgagcaa tctgcttgga aaatttatcc tcaccgtatt
     4921 taaagaaaat ccgtaccaag tcgtgataat catagttatt gaccacatca taagccgtca
     4981 aatgtccctc acgattcatc cgcatatcaa gcggagcatc ttgtttgtaa gaaaagccac
     5041 gctcccgctc atccaactgt ggactagata ctcctaaatc ataacaaatc ccatcaatct
     5101 ctgttacacc tagctccgcc aagcgagtct tgagattacg gaaattatcc ctgataaagg
     5161 tcacttgtcc cttttcaatg taggatgcca agcgaatatg ggcatgatca atagcagtct
     5221 gatcctgatc aaaggcataa agatgcccac catccgtcaa ctgactgagc aggtactcac
     5281 tatgacccgc tccacccagc gttgcatcta cataaattcc attgggtttg atgtctaaca
     5341 tatcgactgt ctcatgcaag agaacagttg tgtgattaaa ttccttggtc atatcttttc
     5401 tattgtacca caaattaaaa taaaaagttg ttgcaaactt tttacaaaaa aactgtcaaa
     5461 tatagttgac aacttata
//
LOCUS       DASGCC010000122         5476 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.122, whole genome shotgun sequence.
ACCESSION   DASGCC010000122 DASGCC010000000
VERSION     DASGCC010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5476
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.122"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..1242)
                     /locus_tag="U1404_001655"
     CDS             complement(<1..1242)
                     /locus_tag="U1404_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5348589.1"
                     /translation="MEQLNLITNFLRIKDKNIVITDEYDMGTHLELHGHLDYTAPKCP
                     SCKGQMTKYDFQKASKIPYLETAGYPLLIRLRKRRFKCKDCGKIAVAETPLVKKNHQI
                     SVAVNQKIAQLLIENQAMTHIAHRLSISTSSVMRKLNEFKFETDWNTLPEVMSWDEYS
                     FKKGKMSFIAQDFNSLNVITILDGRTQATIRNHFLRYPRKVRNQVKVITMDMFSPYYQ
                     LAKQLFPNAKIVLDRFHIVQHLSRAMNRIRIQIMNQFDRTSQEYRALKRYWKLIQQDS
                     RKLSDKRFYRPMFRMHLTNKEILEKLLSFSEELRQHYELYQLLLFHFQEKNSDHFFDI
                     IELEIATVNPIFQTVFKTFLKDKDKVLNALELPYSNAKLEATNNLIKVIKRNAFGFRN
                     FENFKKRILIALNIKKERTKFV"
     gene            complement(1368..2720)
                     /gene="rlmD"
                     /locus_tag="U1404_001656"
     CDS             complement(1368..2720)
                     /gene="rlmD"
                     /locus_tag="U1404_001656"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM5348590.1"
                     /translation="MNLQVNQRIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEEIFC
                     QITSVKRNFVEAKLLKINKESKFRVKPACDIYQACGGCQIMHLRYDKQLDFKQDLLQQ
                     ALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSFKDQVKAGLYAENSHRLIGIT
                     NCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVMVRKARKTGQVQVIFITSC
                     QVNLIKLIDELTSQFPSIITIALNWNRQKTSDIYGEKTEILWGEQAIDEAVLDYEFSL
                     SPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGVGTIGFAFAKKVKSVRGMDI
                     IPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQEGYRADALVVDPPRTGLDEKLL
                     KTILDYKPAKMVYVSCNVSTLARDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK
                     "
     gene            2758..3534
                     /gene="recX"
                     /locus_tag="U1404_001657"
     CDS             2758..3534
                     /gene="recX"
                     /locus_tag="U1404_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEM5348591.1"
                     /translation="MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQ
                     EFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYLKKYEIEENNIVKIVMVLEEEKW
                     LDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
                     LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLSQLELVADEENEDDLIAKELDK
                     QYRKYSRKYEGYELKQRLIQALARKGYDFDRIQAVLRDYL"
     gene            3610..4143
                     /locus_tag="U1404_001658"
     CDS             3610..4143
                     /locus_tag="U1404_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000775318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEM5348592.1"
                     /translation="MKLPKEGDFITIQSYKHDGEIHRTWRDTMVLKTTENAIIGVNNH
                     TLVTENDGRRWVTREPAIVYFHKKYWFNIIAMIRENGVSYYCNLASPYVLDNEALKYI
                     DYDLDVKVFADGEKRLLDVDEYERHRKAMKYSDDIDFILKENVKILVDWINNQRGPFS
                     PAYVNIWYKRYLELRSR"
     gene            4201..4518
                     /locus_tag="U1404_001659"
     CDS             4201..4518
                     /locus_tag="U1404_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF960 domain-containing protein"
                     /protein_id="HEM5348593.1"
                     /translation="MAFEQTNGRYASFGVVTSLPGEVIDSFWYVIDHYLKGVIPLKSV
                     IRFSIKNRRGKITLVFSQEGYKNVLAVDLSSRFDPFYPSTILVMDKQGKETITLPDEV
                     TLL"
     gene            4618..5349
                     /locus_tag="U1404_001660"
     CDS             4618..5349
                     /locus_tag="U1404_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5348594.1"
                     /translation="MVSQTVEKPLYLQLVDELEVAIRERMAPNDKLFSERELTQVYGV
                     SRITVRLALQELEKRGLVYKKHGKGTYVSEISDTAVDLSQAYSFTEQMKKIGKVPRTS
                     ILSFELVKASDYIAQHLQLSQGEEVFEVERLRLADEVPMMLERTYVPASLFPGLAAQR
                     MKSTPLYEIFSEDYHQVIRLAEEEFYASIALDNEAKILGIPSNSPVLHLVRKTYNDKN
                     RIIEFTFSIARADQFRYKITHQRGY"
BASE COUNT         1584 a          888 c         1232 g         1772 t
ORIGIN      
        1 gacgaacttc gttctctctt tctttatgtt caaagcaatc aaaatgcgtt ttttaaagtt
       61 ctcaaagttc ctgaaaccaa aggcatttct cttaatgact ttgatgagat tattagtagc
      121 ttccagtttg gcgttggaat aaggcaattc tagggcattc aaaaccttgt ctttatcctt
      181 tagaaatgtc ttaaataccg tctggaaaat aggattaaca gtggctattt ccagttcgat
      241 gatgtcaaag aaatggtctg agttcttctc ttggaaatgg aataagagca attgatagag
      301 ttcatagtgc tgtcgtagtt cctcggagaa agacaggagt ttttccagta tttccttgtt
      361 agtcaaatgc attcgaaaca tagggcgata aaatcgttta tcgctgagtt tacgactatc
      421 ctgttgaatc aatttccagt agcgtttcaa ggctctgtat tcctgcgatg ttctgtcgaa
      481 ttgattcata atttgaatac gaatacggtt catagcacga ctaaggtgtt gaacaatatg
      541 aaagcggtcg agtacaattt ttgcattcgg aaaaagctgt ttagcaagtt gataataggg
      601 actaaacata tccatggtaa tgactttgac ttgatttcta acctttctag gatagcgtag
      661 aaagtggttt cggatggttg cttgtgttct tccgtccaga atagtaatga catttaggga
      721 gttgaaatct tgagcgataa agctcatttt ccccttcttg aagctatatt catcccagct
      781 catcacctca ggtaaggtat tccaatctgt ttcaaacttg aactcattaa gctttctcat
      841 aactgatgag gttgagatag atagcctgtg tgcaatatgt gtcattgctt gattttcgat
      901 gagtaattgg gcgattttct ggttaaccgc gacagagatt tggtggttct tcttgacaag
      961 aggagtttca gcaaccgcta tttttccgca atctttacac ttgaagcgac gctttctaag
     1021 tcggataagt aagggatagc cagctgtttc taggtaggga attttggagg ctttttggaa
     1081 atcgtatttt gtcatttgtc ccttgcagga agggcattta ggggctgtgt aatccaagtg
     1141 accgtggagt tctaagtgag ttcccatatc atattcatca gtgataacga tatttttatc
     1201 tttaattctg agaaaatttg tgataagatt tagttgttcc atatgagtct ttctaatgag
     1261 ttgtttagtc gcttttcatt ataggtcata tgggactttt tttctatact caaaaaggct
     1321 ccataatctc cacggtggtt ttacccacta cagaaattat agagccttta ttttttgctt
     1381 agtttaacaa ccgcctcggt ccgtgctgtg tgaggaaaca tgtcgacaga ttgaatgtat
     1441 tctaccttgt aggctttgct tagctcaaca aggtcccttg caagagtgga gacgttgcag
     1501 gatacataaa ccattttagc tggtttgtag tccaaaatgg ttttgaggag cttttcatcg
     1561 agtccagttc gtggaggatc gactaccaag gcatcggccc tgtagccttc ttggtaccac
     1621 tttggaatga tttcttctgc tttacctgcc tcatagtggg tattggatag tcccattcgc
     1681 ttagcgtttg ctttagcatc ctcaatggct tctggaataa tgtccatacc tcgaacagat
     1741 ttgacctttt tagcaaaggc gaagccgatt gtgcccacgc cacagtaggc atcaatcaag
     1801 tcttcatctc ctgaaatatc caaagccttg acggcctcgc catagagaat ttctgtttgt
     1861 tggggattta attggtaaaa tgcccgtgga gatagtgaga attcgtaatc taaaacagct
     1921 tcatcgatag cttgttctcc ccataaaatt tctgtttttt caccataaat atcactcgtt
     1981 ttctgtctat tccagtttag agcaatagtg attatacttg gaaattgact ggtgagttca
     2041 tcaattaatt taataagatt aacctgacaa gaggtgataa agatcacttg aacttgacct
     2101 gtttttcgag ccttgcggac cataaccgtg cggattccgt gttgcttgcg ctcattatag
     2161 ataggaatac ggtgcttggt gagtagcttt gcgattccgt tgataatctc ttgtgtttcg
     2221 gcatcttgga cgtaacaatt cgtaattcca atcaagcgat gggaattttc cgcatagaga
     2281 ccggccttga cttgatcttt gaaagatcga gtctggaact gtaatttggc acgatagtgg
     2341 ctaggcttat ccataccgat tgttggataa atagtgtagt tttcgtagcc agctggtttg
     2401 aactttttta gggcctgctg caagagatct tgtttgaagt ctaattgttt atcatagcgg
     2461 aggtgcatga tttgacaacc accacaggct tgatagatgt cacaggccgg cttgacacgg
     2521 aattttgatt ccttgttgat ttttaacaat tttgcttcaa cgaaatttcg tttgactgag
     2581 gtaatttgac aaaaaatttc ttctccctta agggcaccag ggacaaagac tagcgttttt
     2641 tgataaaatc cgatgccttc tccgttgatg cccattcgtt tgatttttaa ggggattcgt
     2701 tggtttactt gtagattcat attattattt taccgaaaaa tcctgtataa tgaaagaatg
     2761 agaattacaa aaattgaaaa aaagaaacgt ctttatttac ttgaagtgga tggtcaggat
     2821 agtttatata ttacggaaga cacaattgtt cgcttcatgc ttagtaaggg aaaggaaatc
     2881 acggagcagg agtttcgtga gcttcgcgat tttgctcagt tttcttatgg gaaaaatcta
     2941 gcactttatt acctttcctt caagcaacgt accaaaaaag aagttagtga ttatctaaaa
     3001 aaatatgaaa ttgaagaaaa caatattgtc aagattgtga tggtattaga agaggaaaaa
     3061 tggctggacg atgggaatta tgttgatagc tatgtccgtc agaatgctct aaatggagat
     3121 aagggaccag ctatgattcg tcagaagttg atgcagaaag gaattcctaa accgctgatt
     3181 gataaaaggc tggcagagga agatttttca gagcttgctg ggaagattgg ggagaaattg
     3241 gtgggtagat accaaagaaa attgcctctt cgagctttgc aagataaagt tgtacaggga
     3301 ttgatgggga agggtttttc ttatgagacg gccaaacaaa gcctgagtca gttggaactt
     3361 gtggctgatg aggaaaatga agatgactta attgccaagg aattggataa gcagtataga
     3421 aaatatagtc gtaaatatga aggctacgaa ttgaagcaaa ggttgataca ggctttagct
     3481 cgaaagggtt atgactttga tcggattcag gctgtccttc gtgattatct gtgaaaaaat
     3541 ttagcctagg ttagaaaaat atgatataat agtcaagata aattgtaatt gtagaaagtt
     3601 ggtaacaaag tgaaattacc aaaggaaggc gactttatta caattcaaag ttataagcat
     3661 gacggtgaaa ttcatcgcac ttggcgtgac accatggtat taaaaacaac ggaaaatgct
     3721 attattggag tcaataatca taccttagtg actgaaaatg atggtaggcg ttgggtaaca
     3781 agagaaccag caatcgttta ttttcataaa aaatactggt tcaatatcat tgcaatgatt
     3841 cgtgaaaacg gagtttccta ttattgtaac cttgctagtc catatgttct cgacaatgag
     3901 gcactcaaat acattgatta tgacctagat gttaaggtct ttgctgatgg tgaaaagaga
     3961 ctgctggatg tggatgaata tgagcgtcat cgtaaggcga tgaagtattc ggatgatatt
     4021 gattttattt tgaaggaaaa tgtcaagata ctggttgatt ggattaataa ccagcgcgga
     4081 ccattctctc ctgcttacgt taatatctgg tacaaacgct atttagaact gagaagtaga
     4141 taaagttaga aaagaaaatc ctgttttaca ggcttttttc ttattgtaaa ggaggggctt
     4201 atggcctttg aacaaacaaa tgggcgctat gcaagttttg gagttgtgac ctcgcttcct
     4261 ggggaagtga ttgatagttt ctggtatgtt attgatcact acttaaaagg ggttattcca
     4321 ttaaaaagtg taatccgttt ttctatcaaa aatcgtcgtg gtaagattac gctggtcttt
     4381 tcgcaggaag gttataaaaa tgtactggct gtagatctaa gtagtcgttt tgatcctttt
     4441 tatccctcaa caatcttggt aatggacaag cagggaaaag agactattac tttgccagat
     4501 gaggtgacct tgctttagct tgaagagctg gtattttatc acctaagata ttgttaatat
     4561 atgaaatttg gtgtaaaata gatttgtaag cttatgtggg ttagaaagga ggagtctatg
     4621 gttagtcaaa ctgttgaaaa acctctctat ttgcagttgg ttgatgaatt ggaagttgca
     4681 attcgtgaga ggatggctcc gaatgacaag ttattttcag agcgtgagtt gacacaggtt
     4741 tatggtgtca gtcgtattac agttcgtttg gctttgcaag aattggaaaa acgtggctta
     4801 gtctataaga agcatggtaa gggaacctat gtatctgaga tttcagatac tgcagttgat
     4861 ttgtctcagg cctatagttt tactgagcaa atgaaaaaaa ttgggaaagt accgaggaca
     4921 tctattttat cctttgaatt ggttaaggcg tcggactata ttgcgcagca tctacaactt
     4981 agtcagggtg aggaagtgtt tgaagttgag cgtttgagac ttgcagatga ggttccgatg
     5041 atgttggaaa ggacatatgt tcctgcctcg ctatttcctg gattagctgc tcagcgaatg
     5101 aagtcaactc ccttgtatga aattttttca gaggattatc atcaggtgat tcgtttggca
     5161 gaagaagagt tctatgcaag tattgctttg gataatgaag ctaagatact cggaattcca
     5221 agcaatagtc cagtgcttca tttggtaaga aaaacgtata atgataagaa tagaattatc
     5281 gagtttacgt ttagtattgc tagagcggac cagtttcgtt acaagattac ccatcaacgg
     5341 ggatattaga atcaatactc ttcgaaaatc aaaactattc gttgtcaaga gccttgatga
     5401 aatccagttc tatcttcgcc ttcgtttcct aggctacttt tgattgttat tgggtatgaa
     5461 aaaaacgcgg acgtta
//
LOCUS       DASGCC010000123         5464 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.123, whole genome shotgun sequence.
ACCESSION   DASGCC010000123 DASGCC010000000
VERSION     DASGCC010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5464
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.123"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            465..725
                     /locus_tag="U1404_001661"
     CDS             465..725
                     /locus_tag="U1404_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HEM5348595.1"
                     /translation="MDVKNLRKLKRIELYEIMLAQSEEIDCLRNQLEKIKTELADRRI
                     MISQSGSIAEASMKLTNIFEEAQKAADLYLYNVKNKIGDVHE"
     gene            718..1308
                     /gene="lepB"
                     /locus_tag="U1404_001662"
     CDS             718..1308
                     /gene="lepB"
                     /locus_tag="U1404_001662"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5348596.1"
                     /translation="MNSSNLKGKELPKTSELKELYQYERYRHTFWRTVKSTVFMLVVV
                     AAFAVLIAVLFLPILRIYGNSMKGTLNSGDIVVSVKSNDFESSDVVAFYYNNNILVKR
                     VIAEAGDWVDMDEEGNVYVNKKKLDEPYLTEKAYGQTDITFPYQVPENRIFVMGDNRQ
                     ESIDSRNNAIGTVADEQIVGKLVFKIWPLPELGWIE"
     gene            1505..5464
                     /locus_tag="U1404_001663"
                     /pseudo
     CDS             1505..5464
                     /locus_tag="U1404_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922029.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
BASE COUNT         1823 a          963 c         1151 g         1527 t
ORIGIN      
        1 ctctgataca tcgccgtttt cggcctgccg tactctacga aagtgacttg tttcgcaagt
       61 cttatttcca acctagaaca gcctttaggc tgttctagct acctgcccct cagttccttg
      121 tctgaaagct aattcattcg atcatacaag gcaatgagct accgccgcca acttttgtca
      181 acatcttagc aattcgtgtt ttacagtctg aagctgatct ctataattga tgggagtggg
      241 aaagacatcc atacattaaa gtaattaaag acaaattaaa taactatatt agtcattcaa
      301 acctaaatga gagggattcg ttttataaaa tattgctaac tttcccttag aaaaactcat
      361 attactagac aataaatgga aactatagta aaataccaag tattgttatt aagttgtgcc
      421 ttaacttaat tttataatat tttagtaaaa gagaggaaac gcagatggat gtaaaaaatc
      481 ttcggaaatt aaagcgaatt gagttatatg agattatgtt ggctcaaagt gaagagattg
      541 attgcttgag aaatcaactt gagaagatta aaacagagtt ggctgataga agaattatga
      601 ttagtcaatc tggctccata gcggaagctt caatgaaact gactaatatt tttgaagaag
      661 cgcaaaaagc tgcggatcta tatctctata atgtgaaaaa caaaattggt gatgttcatg
      721 aatagttcaa atctcaaggg aaaggaactt ccaaaaactt cagaattaaa agagctatat
      781 cagtatgaaa gatatagaca tacattttgg aggacagtga aaagtactgt atttatgctt
      841 gtagttgtag ctgcttttgc tgtgctgatt gctgtccttt ttcttcccat tctaaggatt
      901 tacgggaact caatgaaagg gaccctgaac agtggggaca tcgttgtgtc cgtaaaaagt
      961 aatgattttg aaagcagtga tgtcgtcgcc ttttattaca ataacaatat tctggtcaag
     1021 cgcgtcattg ctgaagctgg ggattgggtg gatatggatg aagaaggcaa tgtatatgtg
     1081 aataagaaaa aactggacga gccttatctt actgaaaaag cttatggtca aacagacatc
     1141 acctttcctt atcaggttcc agaaaatcga atttttgtca tgggagacaa ccgtcaagaa
     1201 tcaattgatt caaggaacaa cgcgattgga acagttgctg atgagcagat tgttggaaag
     1261 ttggtattta agatttggcc actgcctgaa ttgggatgga ttgaataaat gaaagtgaaa
     1321 aaatagaaag gaggatcttg tgagagactg gttaaattta gaaaaaatcc aaggttggcg
     1381 acgaaagtac aagaagctcg tgaatatcat tgctttcctc gtagtatttg caacgaccta
     1441 tgctttgatt ctacccgcta tcacattaga ccaagaaaag gctgaacaaa ctgctgggat
     1501 tgaagtgcaa gaaacaccag taacaacgga aattagtaaa ttaacagaac cgatggtgac
     1561 aactcagcaa actccgatag tgggtagctc tgctgatgaa gttcaatctc ctgcgacaga
     1621 agcggttcct gaccctgctg agcaagtgtc aacagagtct gctagcaaac cccagaccga
     1681 ccaagaacgg attactgagc caactaccat agttcacaaa acgaatgatt atgaggtgac
     1741 tgcaacattt gatgcgagtg ctcaatttcc caaagatgtt gagtttaatg ttagagaact
     1801 agatagccaa tcagaagaat atcggacaca ttatgaaaaa accaaggaga agcttggagt
     1861 aaaaaacttg tatatgcccg attctttgat attcattttt catcacaggg ccaagaggtc
     1921 gagcctgctg cccctataaa gattacgatt agaaacaagg aattagttca acggccagat
     1981 gatagtaaac tgaaaattgt ccactttgaa gagaatagcc aaatagaagt tttagaggcc
     2041 gaaacgaagg aaaatgaaca acaaatctcc gagatcagtt ttgacgctag ccatttttct
     2101 gtttatggag atattttagc aaactattat accgtcaaat ttacctacac tgacacagcg
     2161 ggtcaagaac aagtcattac gagtttgatt gataagactg tggggacttc acttggtagt
     2221 ttgcctgaag ctccttttaa aaacggttat gtattttctc attggattaa taaagatact
     2281 ggtgatcgga ttgatgaaaa tacggtgata actggagacc tgactgctgt agcagtattt
     2341 aataatatca atatctacac cattgatgtc acgtatttct accacaatgt ttctaaaaac
     2401 caagatatta cgattgataa ggaaacggtg caactggaag caagtgatgc tccatatcaa
     2461 ctgacaccac ctgcttctac tgaggtgagc aacaaagagg atacaacttt accagcagat
     2521 gctatttact accctgaaaa accacttctt gagtttacag cagatcaact agagcgactg
     2581 gacgtagcag atggagtgga tgataatcat attagcgaaa gagtacaata tgttccttac
     2641 aatgcagagt atgatgtcat ttataggcta aagaatttga cggggtcagg ttattctgat
     2701 atccagactg ttcatgtccg tggggtactg ggttcaactg ttacaccgca aattctaacc
     2761 tacaactatg ctgactttga acgtgctgat acagcaaaga ttgagaatac tagcggccaa
     2821 aaattgtatg tttattatac acggaaaacc tttactcttt cttataattc caatggcggt
     2881 agtaatattc cccaacaaca gggtctatac gatagccaga ttaagatttc tacaactact
     2941 ccaacaaaag aggggtatac atttgaaggt tggtatgata atcctggact gactggaaac
     3001 aagattacag gctctctcac cttaaagaaa gatacaactt tgtatgcgaa gtggacaccg
     3061 aacagggttc gctacatcat tgggtattac aaggaagtct atgacaacaa cactggaaca
     3121 acctcctatg tatatgatag ttcggcagct ggttggggtc tggttgggac tactgtaaaa
     3181 ggaacagatt caaatattgg acctcctccg ccaacccaaa caaccattgg cagcattggc
     3241 tacgagaagg atgttactaa aagtgctgct tcaagtattg aaattgcagc tgatggaaca
     3301 tctgttttga aagtttacta taaactgaag cgctacactt ttgaattttt cttaaatgat
     3361 aacaatgcca atatcaccat aaatggtaag acctactctg ataggaatag gtacatgata
     3421 cgtgatgttg tgcttggtca agatgtctca aagttatggc cagcttctat aacaaatcct
     3481 aaagaagtat acgatgataa agtctactat gatagctatg gtaggccgat aagatacttt
     3541 tttgactact ggatttttgg gaatctactc ttcaaaacag atcggttcga agttgttgag
     3601 cctatgttgc taacgagtgg aacaaccagt aagttcacag catattggaa tacccaaggt
     3661 acacaggcta acgttgaata ttggttacaa caaccggatg gttcttataa gaagtctgat
     3721 atatatagtc aatctttcct aaagactgca ggactgctac cgaaagaaat ttttggatat
     3781 tcttattata cagatgctag ttttactgaa gcaggcatta ggtattacgg aactcaagga
     3841 aatacatatc gtttctacta taaacgccaa gccttcaaaa ttgactatta ttacaatagt
     3901 actgggttag attcaaagag taacattctc tttgagagtg acatcaatac agcaacttat
     3961 aattaccaac caccacgttc tactggagtt gatgctgatt atacatgggg tggatggtat
     4021 acagattcgt tattgacaga gaagtataac tttaataaga tgcctgccaa taacttggtt
     4081 ctctatgcta agtggattgc tccaaaattt aaggttactt ttgatatcaa cggtggtaat
     4141 ggaactgccc ctgtcgatca aagtgttgaa aaatacaaat acgctaaggc ccctgctgat
     4201 ccaacgaggg aacattacaa tttccttggt tggtctacag aagatgggaa actctatagt
     4261 tggagcgacc aagtaaccaa ggatgtcaaa ttgactgcga agtgggaatt gaaaccatta
     4321 acttatactg ttcgctatct tgaagcaggt acaaatacgc aattggctgc tgataaagtg
     4381 attacgagtc cagcgcttgt attgaatcaa gctatcacag aaaaggcatt gggaattaca
     4441 ggttatcgac cagataagag tagtcaaaca attaacctga attttagagg gaacgaaata
     4501 actttctact atacaccgaa ggtaaaagat gttgtttaca ccatcaagta tgtcttgaag
     4561 gataacccag ctattgaggt agcacctaca gttactcgta aggttgatgg aagtatcatc
     4621 cgtgcgaaag aagctgctgc agatgtgaat aaacagcatt tgcagagtca gtctggtgtt
     4681 actgctgaaa tgctggaaat ggattactat ccaactgtaa atactcaaag tttgattcta
     4741 acttctaatg atgcaaataa tgtgattgtt tttgaatatg tcggattcga tactcaaacc
     4801 tttacggtaa attatttgga tatggatggt aagaaaatcg atggtcaaga accattggta
     4861 gtttaccgaa agaaaccagg tagtttcgtg gtagatcata agactataaa tggttatacc
     4921 tatgatcatt cgttagacag tgagaatgca gctgataaga cagtataccg tgtaagtaag
     4981 ggtggtcaca taaccattga tctctattat aagaaaaacc taacactgac cgcattagat
     5041 aagtccaaag tttatgatgg cactgcccta tcaagttcgg gtctatctga tctaaaccct
     5101 gcttacagtg tagacctgaa agcaggagac aaattagttg ccatcggcta tgatggtagc
     5161 caaaccaatg cgggtagcag cgcaacgaca cctaaacttg ctaacatcag caatgctctt
     5221 ggtgctgacc ggacgaattt ctatcacata acctatcaag cgggtaactt gagagttgac
     5281 caacagccag tcgtggttgt catcaacggt gaaaagaaat cgaaaatcta tgatggtaaa
     5341 gcggaagcgg ttggttataa ggtgatggag ataagagata caagtggtct ctataaagaa
     5401 acagatatcc attttaatgg ttcaagttca gagcagtcgg tcaagaaaaa agatgcagga
     5461 attt
//
LOCUS       DASGCC010000124         5423 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.124, whole genome shotgun sequence.
ACCESSION   DASGCC010000124 DASGCC010000000
VERSION     DASGCC010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5423
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.124"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..1254
                     /locus_tag="U1404_001664"
     CDS             <1..1254
                     /locus_tag="U1404_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HEM5348597.1"
                     /translation="AADLIKGGLKTFVGFIVVGGGANIIVGSLEPFGQMFEQAFNLKG
                     VVPNNEAIVAMALDKYGTATSLIMLLGMVFNIAIARFTRFKYIFLTGHHTLYMACMIA
                     VIMSVAGFTSVGLIVMGGLALGLIMTLSPAFVQKYMIQLTGNDHVALGHFSALGYWLS
                     GVVGGLVGDKSKSTEDINFPKGLAFLRDSTVSIAISMSLIYMIVALFAGGDYIKENLS
                     GGTNSMIYALTLGGTFAAGVFVILSGVRLILAEIVPAFKGISEKLVPNSKPALDCPVV
                     YPYAPNAVLIGFISSFAGGIVSMIILALTGGVVILPGVVPHFFCGATAGVMGNASGGV
                     RGAVCGAFMQGVLISFLPVFLLPVLGDLGFAGSTFSDADFGLSGIFLGVLAKNGGILT
                     VSVGIFAVLALMLGLSLVKKEQKEG"
     gene            1256..2104
                     /locus_tag="U1404_001665"
     CDS             1256..2104
                     /locus_tag="U1404_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM5348598.1"
                     /translation="MTSGTADLKRFAKEIRYHTLATLNQLGFGHYGGSLSIVEVLAAL
                     YGEILDIRVQNFSSKERDHFILSKGHAGPALYSTLYLKGFFDRDFLLSLNQNGTHLPS
                     HPDRNLTPGVDMTTGSLGQGMSVATGVAYGKKIEQSPYYTYTLVGDGELNEGQCWEAA
                     QFAAHHELSKMILFVDDNKKQLDGRTHDICQTFDFVEKFQAFGWESVRVNGADIDAII
                     NAILTMKSSKSPQPKCIVLDTTKGQGVTFLEELESNHHLRLSGQLREDLEQVTLVLAR
                     ELEVTE"
     gene            2101..3027
                     /locus_tag="U1404_001666"
     CDS             2101..3027
                     /locus_tag="U1404_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HEM5348599.1"
                     /translation="MRQTKEMRLVYSDFLAQVGQEDTTIAAIEADLSSSMATNKLSSV
                     LGGRYVNVGIMEQEMVGVAAGLSLLGYKPYIHTFGPFASRRVYDQVFISLAYAQLNAT
                     IVGSDAGVSAEMNGGTHMPFEELGLMRLIPKARVYEVSDDVLFQAVLKETIKVDGLKY
                     IRTIRKAPTPIYQGGEDFSKGYCVLRQGEDMTLLASGIMVEQALKAADQLEAQGVSVQ
                     VIDLFRIKPIHEDIPALLSGRPVLTVENHNRIGGLGSSICELMATDLTTPVHRIGIEE
                     SFGQVGQQAYLMDVYGLTAEYIVKQAQLMLQQ"
     gene            3218..4978
                     /locus_tag="U1404_001667"
     CDS             3218..4978
                     /locus_tag="U1404_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM5348600.1"
                     /translation="MKKIQREFQKIYYNLDKILLLFFTLFTFMEFVWIPLNSWISEGL
                     LAMTGHAYLSPTNLLSVFAENLLVTGLFILLFFVNIAIAYLELALLFTGVWQLLDEKV
                     KHLPDYLRDVRDSMVAIIRHSSLPKVLFLLFYSVILLPFLRRVLNIYYFNKIVVPQFI
                     VDYLSNTVWLGILILIFLLLFFWLAARFMYALPNIYFEHRGVKESIAYSWEKTRGRKQ
                     IGSLFRLIWLITFPVLLFTGVGGLFYLVQLLAEHFVPSASYWLAVVCYALLKLAYYGV
                     VALFMMGFVSLLTGKQLPIYRRKRLRHHLRLAILLVSGLVFGTQGALALYFPFDTLPV
                     TISHRGVDDGNAVQNSIEALEKTSQLKPDYIEMDVQETKDGQFIVMHDTDLLALTGNP
                     GGTHDYTLAELTGMTASENGMVAPVPSFDEYLEKADELGQKLLVEIKVTKADSPKLTQ
                     NFLKKYGQRLIAKGHQMQSLDYRTIIEIKQYSEKLVSFFILPFNSIYPTTVADGYTME
                     YTSLDQNFMTKSWIRGKSVYAWTPNEEESMTKMLLLQVDGIITDNMTDLQSLMEEMKE
                     NRRYPDLFFQQFQSLIYNFE"
     gene            complement(5018..5317)
                     /locus_tag="U1404_001668"
     CDS             complement(5018..5317)
                     /locus_tag="U1404_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEM5348601.1"
                     /translation="MMNMQNMMRQAQKLQKQMEKSQAELAAAQFTGSSVQDLVTATFT
                     GDKKLVSIDFKADVVDADDIETLQEMTVQAVNAALTKVDEATQKKLGAFAGKLPF"
BASE COUNT         1428 a         1033 c         1244 g         1718 t
ORIGIN      
        1 gcagcagatt taattaaggg gggcttgaaa acttttgttg gttttattgt tgttggtggc
       61 ggagcgaata ttattgttgg ctcgcttgag ccatttggtc aaatgtttga acaagctttc
      121 aacttgaaag gggttgttcc aaataatgaa gctattgtag cgatggcttt ggataagtat
      181 ggaactgcta catccttgat tatgttgctt ggaatggtct tcaatattgc tattgctcgc
      241 tttacacgct ttaaatatat tttcttgaca ggacaccaca cactatatat ggcctgtatg
      301 attgcagtta tcatgagtgt tgcaggattc acttctgtcg gcctaattgt gatgggtggg
      361 ttggctttag gtctgattat gacactctcc ccagccttcg ttcaaaaata catgattcaa
      421 ttgacaggaa atgatcatgt cgccctaggt cacttcagtg cacttggtta ctggttgagt
      481 ggtgtagtag gcggtttggt cggtgataag tctaagtcta ctgaggatat taatttccct
      541 aaaggtttgg cattcttgcg tgattcaact gtcagcattg ccatttctat gtccttgatt
      601 tacatgattg tggctttgtt tgcaggcggt gattatatta aggaaaacct tagtggtggt
      661 actaacagca tgatttacgc cttgacccta ggtggaactt ttgcagcagg tgtttttgtt
      721 atcttatctg gtgtacgctt aattttagcg gaaattgttc cagccttcaa aggaatttca
      781 gagaagttgg ttccgaattc caaaccagcc ctagactgtc cagttgttta tccttatgca
      841 ccaaacgccg tgttgattgg ctttatctct agttttgcag gtggtattgt cagcatgatt
      901 attcttgcct tgactggcgg tgtcgttatc cttccaggtg tcgtaccaca cttcttctgt
      961 ggagcaactg caggggtcat gggaaatgcg tcaggtggtg ttcgtggcgc agtttgtggt
     1021 gcttttatgc aaggggttct cattagtttc ttacctgtat tcttacttcc tgttttggga
     1081 gaccttggtt ttgctggttc aactttctca gatgcagact ttggtctttc tggtattttc
     1141 ctgggagtgc tagctaagaa tggcggtatc ctcacagttt cggttggtat ctttgctgtc
     1201 ttggctttga tgcttggatt gtcattggtg aaaaaagaac agaaagaagg ataatatgac
     1261 tagtggtaca gctgatttga aacgatttgc caaagaaatt cgctaccata ccttggcgac
     1321 tttgaatcaa ttaggattcg gtcattatgg tggtagctta tcaatcgtag aagtgttggc
     1381 tgctctatat ggagaaattc tggacattcg tgtccagaat ttctcttcta aggagcggga
     1441 tcactttatt ctgtctaagg gacatgcagg tccagcactt tatagtacgt tgtatttgaa
     1501 aggcttcttt gatagagatt ttctcttgtc gctaaatcaa aatggaacac atttgccttc
     1561 acaccctgac cgaaacttaa cgccaggggt ggatatgaca acgggttcgt tggggcaagg
     1621 gatgagtgtc gcgacaggtg ttgcttatgg taagaagata gaacagtcac cgtactatac
     1681 ctatactctg gtaggggacg gggaattgaa tgaaggtcaa tgctgggaag cagctcagtt
     1741 tgcagcccac cacgaactat cgaaaatgat tctgtttgtg gatgacaata aaaaacaact
     1801 agacggtcgt acccatgata tttgccaaac ctttgatttt gttgaaaaat ttcaggcttt
     1861 tggttgggaa tcagtgcgtg tgaatggtgc cgatatagat gctattataa atgctattct
     1921 aacaatgaag tcaagtaagt ctcctcaacc aaaatgtatc gttcttgata ctactaaggg
     1981 gcagggagtt accttcttag aagaattaga aagcaatcac catttgcgtt tgtcgggtca
     2041 attacgggaa gatttagagc aagtaacact tgttttagcg agagagttgg aggtgacgga
     2101 atgagacaga caaaggagat gcgactggtt tatagtgatt ttctagctca ggtagggcag
     2161 gaagacacaa ccatagcagc tattgaagca gatttatcca gttcaatggc taccaacaaa
     2221 ttgtcctctg ttctgggggg acgctatgtc aatgtaggta tcatggagca ggaaatggta
     2281 ggggtagcag ctggattatc tcttctagga tacaagccat acattcatac cttcggacca
     2341 tttgctagtc gtagagtcta tgatcaggtg tttatctctc tagcttatgc ccagctcaat
     2401 gccacgattg tagggtcgga tgcgggggta tcagcggaga tgaatggtgg gactcacatg
     2461 ccgtttgagg agctgggctt aatgcggctc attccaaaag cgcgtgttta tgaggtcagt
     2521 gacgatgtcc tgtttcaagc tgttcttaaa gaaaccatca aggtagacgg gttgaagtac
     2581 attcgtacca ttcggaaagc gccaacgcct atttatcaag gtggagaaga ttttagcaaa
     2641 ggctactgtg tccttaggca aggggaggat atgaccttgc ttgcgagtgg tattatggta
     2701 gagcaggcat taaaggcggc ggatcagtta gaggctcaag gagtatctgt tcaagtcatt
     2761 gatctttttc gtatcaaacc aattcatgaa gacataccag ctctattatc aggaaggcca
     2821 gtattaactg tagaaaatca taatcgaatt ggtggcctag gtagtagcat ttgtgaatta
     2881 atggctacag atttaacgac cccagtacat cgaattggta ttgaggaatc ttttggtcaa
     2941 gttgggcaac aagcttactt aatggatgta tatggtttga cagcagaata tattgttaaa
     3001 caagcacaat taatgttaca acaatagtga gatagtgatt cgtattttat gtagcctttc
     3061 gatttacttt ggcttggaaa taggaaagca aatcaaatgt aagaaatcaa gctccactta
     3121 ggaacttgat tttttctata cttcattcat tgctttcaca atcttccatc cttgatgaag
     3181 gcttgcaatt cttgcaagaa tatgggacac tagaatcatg aaaaagatac aacgtgaatt
     3241 tcaaaaaata tattacaacc tagacaagat tctcttgctc ttctttaccc tgtttacctt
     3301 tatggaattt gtttggatac cgctcaattc atggatttct gagggactct tagctatgac
     3361 agggcatgcc tacctttcac cgacgaattt gttgtcggtg tttgctgaaa atctactcgt
     3421 gacaggcttg tttattctcc tcttttttgt caacattgca attgcctatc tagaattagc
     3481 tctattgttc acaggggttt ggcaactgtt ggatgaaaaa gtcaagcacc tccccgacta
     3541 tttacgggat gtacgagata gtatggtggc gattatccgt cacagcagcc taccaaaggt
     3601 tctatttctg ctcttttact cagttattct tctcccattt ttacgccgag tattaaatat
     3661 ctattatttt aataaaatcg tagtgcccca atttatcgta gattacctat ccaacacagt
     3721 ctggctagga atattgattt tgattttcct cctcttgttc ttctggcttg cggcacgctt
     3781 catgtacgct ctgccaaaca tttattttga acacaggggt gtgaaggagt ctatcgctta
     3841 ttcttgggag aagaccagag gcagaaagca gatcggttca ttgttccgtc taatttggtt
     3901 gattactttt ccagttctcc tatttacagg agtaggagga ctattctatc ttgtgcaact
     3961 gttagcagag cattttgtac caagtgcttc ttactggctg gcagttgtct gttacgcact
     4021 tctaaaatta gcctactacg gagtagttgc actcttcatg atgggatttg tcagcctcct
     4081 aacaggaaaa caactaccaa tctaccgccg taaacgcctc cgtcatcacc ttcgactagc
     4141 cattttgctc gtatctggtc tggtgttcgg tacccaagga gcgcttgccc tctactttcc
     4201 ctttgacact ctgccggtta ccatttctca ccgaggtgtc gatgacggca atgctgtcca
     4261 gaactctatc gaggccctag agaaaacctc tcagctcaag ccagattata ttgagatgga
     4321 tgttcaggag acgaaggatg gtcagtttat tgtcatgcat gatacggatt tattggcttt
     4381 gacgggcaat cccggaggta cacatgacta tactcttgca gagttgacag ggatgactgc
     4441 atcagaaaac ggcatggtag ctccagttcc ttcttttgat gaatatcttg aaaaagcgga
     4501 tgagctggga cagaaattat tggtagaaat taaagtgacc aaggcagatt cgccaaaact
     4561 cacccagaat ttcttaaaaa aatacggtca acgtttgatt gccaaaggac accagatgca
     4621 atcattagat taccgtacta ttatcgaaat aaagcagtat agcgagaaat tagtatcctt
     4681 ctttattctt ccgttcaatt caatttatcc gacgacggtt gctgatggtt atacaatgga
     4741 atacacttcg ctggatcaaa attttatgac caagtcttgg attcgaggga agtcggttta
     4801 tgcttggaca ccgaatgaag aagagagtat gaccaagatg ttgctgctac aagtggacgg
     4861 tatcatcact gacaacatga ccgacctcca aagtctgatg gaggaaatga aagagaatcg
     4921 acgctatcca gacctctttt tccagcaatt tcagtctttg atttataatt ttgaataaaa
     4981 aaatcgcgag aggagagtat ccaatcgcgt tttcttttta aaaaggcaat ttacctgcaa
     5041 aggcacctag ttttttctga gtcgcctcgt cgacttttgt aagtgcagcg ttgacggctt
     5101 ggacggtcat ttcctgcaga gtttcaatat catccgcatc tacaacgtca gccttgaagt
     5161 caatagaaac caatttcttg tcgccagtaa aagtagcagt aaccaagtcc tgtacagagc
     5221 taccggtaaa ttgagcagca gccaactcag cttggctctt ctccatttgt ttttgaagtt
     5281 tttgagcttg gcgcatcatg ttttgcatat tcatcataag atttttaaga ttcctttcgt
     5341 atcaagggtt tagaccttgt ttgtaatttt tccttgcctt attttgcctt attgttaaaa
     5401 attttcaaag gcagaggtgt agt
//
LOCUS       DASGCC010000125         5273 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.125, whole genome shotgun sequence.
ACCESSION   DASGCC010000125 DASGCC010000000
VERSION     DASGCC010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5273
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.125"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(34..804)
                     /locus_tag="U1404_001669"
     CDS             complement(34..804)
                     /locus_tag="U1404_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5348602.1"
                     /translation="MQNNHTFVICAYGDSKYLEECIHSLKQQTLQSQLILYTSTPSEY
                     IEQICQKNAIVMHTAQGGGIGKDWNLALSFVTTPYATIAHQDDIYLPDYCEKIMSQMT
                     EETLIAYSDYQEVKEGVAIPLTSNLKIKQLMLRTMAMFPKWKFWRNRVLAFGNPISCP
                     AVTYNLKKLNDFKFNEEMKVSLDWFAWYQIAQKNGSFTFVDESLMYHRIHEESETTNS
                     IENNIRTQEDYEMYLLFWPKFIAKFLLSYYVKSQETNN"
     gene            complement(794..1150)
                     /locus_tag="U1404_001670"
     CDS             complement(794..1150)
                     /locus_tag="U1404_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2304 domain-containing protein"
                     /protein_id="HEM5348603.1"
                     /translation="MTIQALAMFLASLGFLYFIFRNINKNKILFEHAFMWIVIGFGLI
                     VFALFDVIPIKLAYLFGFGLTSNFLLSVAIFVLLVIGFLHSMALSQQKQQIKNLIQEV
                     SMAKKRISELEEHHAE"
     gene            complement(1150..1866)
                     /locus_tag="U1404_001671"
     CDS             complement(1150..1866)
                     /locus_tag="U1404_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5348604.1"
                     /translation="MKVLMIIPAYNEEESILQTVQGIIDYRNSVNFQLDYVVINDGST
                     DHTKEILIQNKLNAVHLVQNLGIGGAVQTGYKYALDNDYDVAVQFDGDGQHDIRSLNS
                     LIQPILVGQADMVIGSRFVGDTLSEFQTSFMRRFGIGVISNMIKLTTGNRIWDTTSGY
                     RLGNRKVIVQFAKRYPIKYPEPESTVHLLKQNFQVVEAPANMFERAGGVSSITPLKSI
                     RYMVEVCSSILIASLMKEGE"
     gene            complement(1967..3223)
                     /locus_tag="U1404_001672"
     CDS             complement(1967..3223)
                     /locus_tag="U1404_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5348605.1"
                     /translation="MKRILFISPTTSMDNGAEKSIYYLMKYLIQLGHTVINVTHAIGG
                     EPQDKHEQLYKMIGVKNYYLPTVKWWWPDAPGGEILNREEATSYYRQNVQDIAEIIDQ
                     NEIDLVISNTVNVFQGAIAASCQKVPHFWLIHEFPKNEFAYYADKIDFIEEYSSELFS
                     VTGELNNFLTPLFNKKVHSFISYTEQETKVLKKGNQVRIVSVGRLTEGKNQLELIKAY
                     KTLNRLDIELVFIGGWDSKYKAICDEYIHENKLQKNVKFLGNLDNPWEEVTDRDICVF
                     PSSMETFGLVYVEAILRGLPVILSDNLGHLTAFEIFSAGQIYKLGDIEELVTKLEQVI
                     ESFRNFSDRALFDVERLRTLYTPEVAYKEILNSINHLEYTGHQNTNLSHIKELLTLNM
                     HPKRLERYARLISKIATKIRHKLRLQ"
     gene            complement(3223..5121)
                     /locus_tag="U1404_001673"
     CDS             complement(3223..5121)
                     /locus_tag="U1404_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5348606.1"
                     /translation="MQRDKQRRNNYSDIKNRYLIYTIYEHQSSLQDYKVIFLEALAKI
                     SRDVLIVVNGKLPQADINRLAQFGKVLERDNEGYDVAAFRHGIIHTGKEALQQYNQLI
                     LVNDTNIGPFRDLEEVFSEFNSDQLDFWGISMGEEQLDFTGYNPYGKIPKHLQSYFVV
                     IENSLLRYEGFYDYWEKLSDTDSRNKAIGKHETVFAKYFYDRGFKYDALIKDTKDSAL
                     YIHPFKLLKQGCPLVKYSAFRNYDREQYFWHGLERESEIPDLMEYIAKETDYPIEVVS
                     SILEDFKTRENQSYILIIDGVENIIPQCTRYRVLNKAEQLRELGYTVRVINNSLVQLQ
                     DAQFASHIIIYRAPFNDMLKEICRAAHIKNRPVYFDIDDLVFDTKFTDELEFTQGLSK
                     REKKGYDTSVLAYKKMLSLCDYAITSTSKLKDELEQYKNKVILNRNVMSKELVEHSLQ
                     VKKNSNDNKVKIGYFSGSITHNENFDLISQALLHLLQKYPQVELHIVGYLDIPKPFQK
                     FKKQIVSHEYVDWRKLPILISQVDINLAPLVTTTFNEAKSEIKWIEAAAVKVVTVASN
                     LGAFEEMIQDGVTGVLADDNEWESKLERLILEQDLREQIAENAFEFVMNHCTTANRIN
                     DFLKEELV"
BASE COUNT         1687 a         1029 c          748 g         1809 t
ORIGIN      
        1 gatgggaata caatgattgg taactaaaat attttaatta ttcgtctctt gactcttaac
       61 atagtaactc aggagaaact tggcaataaa ctttggccag aacaacaaat acatttcata
      121 gtcttcttgt gtacgaatat tgttttcaat gctatttgtc gtctcagatt cctcatggat
      181 acgatgatac atcagactct catctacaaa ggtaaagctc ccattttttt gcgcaatctg
      241 ataccaagca aaccaatcaa gagaaacttt catttcttca ttaaacttga aatcattcag
      301 tttcttcaaa ttataggtca cagctggaca agaaattgga ttaccaaagg ctaaaaccct
      361 attccgccaa aacttccatt tgggaaacat ggccattgtc cgtaacatga gttgcttgat
      421 tttcaaattt gaagttaagg gaatagccac accttcctta acttcctggt aatctgaata
      481 agcaatcaat gtttcctctg tcatctgaga cattattttt tcacaatagt ctggtaaata
      541 aatatcatct tgatgggcaa tcgtagcata aggggttgtt acaaaagaga gtgctagatt
      601 ccaatctttt ccaatacctc ctccttgtgc ggtatgcatt acgattgcat tcttttggca
      661 aatttgttct atatattcac tcggagtact agtgtatagg atgagttgtg attgaagtgt
      721 ttgctgcttt aacgaatgga tgcattcttc tagatactta ctgtctccat aagcacagat
      781 aacaaatgta tggttattct gcatgatgct cctccaactc agagattctt tttttagcca
      841 ttgatacttc ttgaattaaa tttttaatct gctgcttttg ttgagataaa gccatactat
      901 gcaaaaatcc aatcaccaag agaacaaaaa ttgccacaga taacaagaaa ttggaagtca
      961 gaccaaaccc gaataagtaa gccaatttaa taggaataac atcaaagagc gcaaaaacaa
     1021 tcagtccgaa gccaataaca atccacataa aggcatgttc gaataagatc ttatttttat
     1081 taatattcct aaaaataaaa tacaaaaaac ctagtgaggc aagaaacata gctaatgctt
     1141 gtatggtcat tattctccct ccttcattaa tgatgcaatc aagattgatg aacaaacctc
     1201 aaccatataa cgaatcgatt ttagaggtgt tatggatgaa acccctcccg ctctttcaaa
     1261 catatttgcc ggtgcttcta ctacttggaa attttgcttt agtaaatgaa cagttgattc
     1321 cggttccgga tatttaattg ggtatcgttt tgcaaattgt acaatcactt ttctatttcc
     1381 caaacgataa cctgatgtag tatcccaaat tcggtttcca gttgttaatt taatcatatt
     1441 tgaaataaca cctattccaa aacgcctcat aaagctagtt tgaaattccg acaaagtatc
     1501 accaacaaag cgtgagccaa tcaccatatc agcctgacca actaagattg gctgaattaa
     1561 gctatttaat gaacgaatgt catgctgacc atcaccatca aattgaactg ctacgtcata
     1621 gtcattgtcc aaggcatatt tatatcccgt ctgaacagct ccaccaatac ctaaattttg
     1681 tactaggtga acagcattta atttattttg aatcaaaatt tctttcgtgt gatctgttga
     1741 accatcattg atgacaacat aatccaattg gaaattcaca ctatttctat aatctataat
     1801 tccctgaaca gtttgaagga tactttcttc ttcattgtag gcagggataa tcattaatac
     1861 tttcattttt tctctctaaa actagaattc tatataactt tttagattct acttactcat
     1921 ttgaagaaac cataatatac atattttagc atagctatcc tattcttcat tgaagtcgaa
     1981 gtttatgtct gatttttgtc gcgatcttgc tgatcaatct tgcataacgc tccaatcttt
     2041 ttggatgcat atttaaagtc agcaactctt ttatgtgact taaatttgta ttttggtgtc
     2101 cagtatactc taagtgattg atgctgttca gtatttcttt ataggcaact tccggtgtat
     2161 atagagtacg taaacgttcc acatcaaaca gtgccctatc tgaaaaattt ctaaaggatt
     2221 caatcacttg ctctaactta gtcaccaact cttctatatc ccccaattta taaatttgac
     2281 ctgctgagaa tatttcaaat gccgtcaaat gtcctaaatt atctgataga attactggaa
     2341 gccctcttaa gattgcttca acatagacta agccaaaagt ttccatagat gaggggaaaa
     2401 cacagatatc tctatcagtc acttcttccc aaggattatc taagttacct aaaaatttaa
     2461 catttttctg taatttattt tcatggatat attcatcaca aatagctttg tatttactat
     2521 cccatcctcc aataaaaacc aattcaatat ctaatctatt tagtgtctta tatgctttta
     2581 taagttctaa ttgatttttt ccttctgtta atcgaccaac agaaacaatt ctaacttgat
     2641 tgcctttttt taaaactttt gtttcttgct cagtataaga aataaacgaa tggactttct
     2701 tattaaatag tggtgttaaa aaattattta actctccagt cacactaaat aattctgaag
     2761 aatactcttc tatgaagtca attttatcag cataataagc aaactcattt ttaggaaatt
     2821 catgaattag ccagaaatgg ggaacctttt gacatgaggc agcaattgct ccttgaaaaa
     2881 cattaacagt atttgaaata actaagtcta tctcattttg atcaataatt tcagctatgt
     2941 cttgaacatt ctggcgatag tagcttgtag cctcttctct attaaggatt tctccacctg
     3001 gtgcatccgg ccaccaccac ttgactgttg gcaaatagta attcttaacc cctatcattt
     3061 tataaagttg ctcatgctta tcttgtggtt cccctcctat tgcatgagta acatttataa
     3121 ctgtgtgtcc cagttgaata aggtacttca ttagataata aatagacttc tccgcaccat
     3181 tatccatact agtcgtagga gaaataaaca aaatacgttt cattagacta actcttcttt
     3241 caaaaaatca ttaattctat ttgctgtagt gcaatgattc attacaaact caaaagcatt
     3301 ttctgctatt tgttctctca agtcttgttc aagaatcaat ctctccaatt tactttccca
     3361 ttcgttatca tctgctagaa ctccagtcac tccatcttga atcatctctt caaatgctcc
     3421 aagattactt gcaactgtca caactttaac tgctgccgct tctatccatt taatttccga
     3481 ctttgcttca ttaaaggttg tggttacaag cggcgccaag ttaatatcaa cttgtgaaat
     3541 taaaattgga agctttctcc aatcaacata ctcatgactc acaatctgtt ttttgaattt
     3601 ttggaatggt ttcggaatgt ctaaatatcc tactatatgt aattccactt gcgggtactt
     3661 ttgaagtaga tgtagcaatg cttgactaat taaatcaaaa ttttcgttgt gtgtaattga
     3721 ccctgagaaa tatcctattt taactttatt gtcgttcgaa tttttcttaa cttgtaaact
     3781 atgctcaact aattctttag acatgacgtt gcgattcaag ataaccttgt ttttatattg
     3841 ttcaagttcg tctttcaatt tcgaagtcga tgtgatagca taatcgcaga gagaaagcat
     3901 ttttttgtaa gctaagacac ttgtatcata gccttttttc tctctcttgc tcaagccttg
     3961 ggtaaattca agttcatctg taaattttgt atcaaaaacc aaatcatcaa tatcaaaata
     4021 aacaggtctg ttctttatgt gtgccgccct acatatttct ttcagcatat cattgaatgg
     4081 agcacgataa ataataatat gactagcaaa ctgtgcatcc tgaagttgta caagagaatt
     4141 atttatcact cgaactgtat aaccaagttc tcgcaattgc tcagccttat ttaacacacg
     4201 ataacgtgta cattgtggaa taatattttc gacaccatca ataatcaaaa tataagattg
     4261 attttctcta gttttaaaat cttctaatat agaagacacc acttcaatcg gatagtctgt
     4321 ttccttagca atatactcca tcaaatccgg aatctcagat tctctttcta aaccatgcca
     4381 aaaatattgt tctctgtcat aatttctaaa ggccgaatac ttaactaatg gacaaccttg
     4441 ctttaataat ttaaacggat gaatatacaa tgcactatct ttcgtgtctt taatcaatgc
     4501 atcatactta aagcctcgat cataaaaata ttttgcaaac acagtttcat gttttccaat
     4561 tgccttatta cgagaatccg tatcagagag cttttcccaa taatcataaa atccttcata
     4621 cctaagcaag ctattttcaa taacaacaaa atatgattgt aagtgcttag gaattttacc
     4681 ataagggtta taaccagtaa agtctagctg ctcctcaccc atggaaattc cccaaaagtc
     4741 tagctgatcg gaattaaact cagagaaaac ctcttccaaa tctctaaaag gaccaatatt
     4801 cgtatcatta accaagatga gctgattata ttgttgtaac gcctcttttc cagtatgtat
     4861 tatcccgtgt cggaaagccg caacgtcata gccctcatta tctctttcca aaaccttacc
     4921 aaattgtgct aaacgattta tatcagcctg tggaagttta ccatttacaa caattaaaac
     4981 atctcgagaa attttagcca atgcctctaa aaaaattact ttatagtcct gtaaagacga
     5041 ttgatgttca taaattgtgt aaatcaagta acgatttttg atatctgaat aattatttct
     5101 acgttgctta tcacgttgca aagctagtag agttcgcttt atatattttg gaattctcca
     5161 gaaaaacttt gcaatatttt tggtaagctc taatatataa aacaatagct tgtatttacc
     5221 tgataagata aataatcgcg ttgtgaaatt tctaatccac cttttcacag tgt
//
LOCUS       DASGCC010000126         5207 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.127, whole genome shotgun sequence.
ACCESSION   DASGCC010000126 DASGCC010000000
VERSION     DASGCC010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5207
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.127"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            33..1226
                     /locus_tag="U1404_001674"
     CDS             33..1226
                     /locus_tag="U1404_001674"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEM5348607.1"
                     /translation="MTKEKLILAYSGGLDTSVAIAWLKKDYDVIAVCMDVGEGKDLDF
                     IHDKALSIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVE
                     MAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWKWAREEEIIFAKEN
                     GVPVPADLDSPYSVDQNLWGRANECGVLENPWNEAPEDAFGITTSPENAPDTPEYVDI
                     EFKAGIPVAVNGEKLSLANLIQRLNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI
                     TLLTAHKEIEDLTLVREVSHFKPIVSNELSNLIYNGLWFNPATDALKAYLAQTQAVVN
                     GTAKVKLYKGSAKVVARKSPNSLYDEDLATYTSADTFDQDAAVGFIKLWGLPTKVNAE
                     IHKKS"
     gene            1240..2634
                     /gene="argH"
                     /locus_tag="U1404_001675"
     CDS             1240..2634
                     /gene="argH"
                     /locus_tag="U1404_001675"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEM5348608.1"
                     /translation="MEAKKLWGGRFEASLEEWVEEFGASIRFDQKLAKYDIQGSLAHV
                     KMLGQTGIVSQAEAQVIQAGLEELLEEYEAGKLVFDIRNEDIHMNIESLLTEKIGSVA
                     GKIHTARSRNDQVATDMHLYLKDTLFQVVDKLTNLRQILVDLAQEHVETIMPGYTHLQ
                     HAQPISFAQHLLAYYNMFSRDSERFAFNMQHTNVSPLGAAALAGTTFPIDRRMTSDLM
                     GFAKPYSNSLDAVSDRDFILEFLSNASILMMHMSRLCEEIINWCSHEYQFVTLSDTFS
                     TGSSIMPQKKNPDMAELIRGKTGRVYGNLVGLLTVMKSLPLTYNKDLQEDKEGMFDTA
                     ETVLISIDILAGMLQSMTVHKERMAQSTEKDFSNATELADYLASKGLPFRQAHEIVGK
                     LVLECSKAGHYLQDVSFETYQAISPLIQADIYDALSSKVAVSRRNSLGGTGFESIADQ
                     LKSAKEEIQNAKSL"
     gene            2705..3064
                     /gene="rnpA"
                     /locus_tag="U1404_001676"
     CDS             2705..3064
                     /gene="rnpA"
                     /locus_tag="U1404_001676"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEM5348609.1"
                     /translation="MKKSYRVKRERDFNDIFTKGNNVANRRFVVYRLPKEQKHFRVGL
                     SVSKKLGNAVMRNKIKRRIRHILIECQHQLVADDFVIIARKGVEELSYQEMKQNLIHV
                     LKLAKLYQEGVVIEKES"
     gene            3048..3860
                     /locus_tag="U1404_001677"
     CDS             3048..3860
                     /locus_tag="U1404_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM5348610.1"
                     /translation="MKKKVKWAGLLVASLIVLTACGTGPVTSQSTDAWDRLIYWFASI
                     IQFLSINGQIGIGIILFTILIRTLLLPLFQIQMNSSRKMQELQPQLKKLQAEYPGTDM
                     ESRQQLYEATQALYKENGVSMRASMIPLFIQMPILLALFQALTRVEALKVGHFLWLNL
                     GEPDPFFILPIMAAVFTFLSSWLTNKSAIEKNMAMTIMTYVMPVMIFFFAVAAASGVA
                     LYWTVSNAYQVAQTLVFNNPFKIIAERQAKIDAEKERQAKIRRAQKKAQKKK"
     gene            3880..4875
                     /locus_tag="U1404_001678"
     CDS             3880..4875
                     /locus_tag="U1404_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HEM5348611.1"
                     /translation="MKFTGASVEEAIQNGLVELNIPRKKAHITVVAREKKGFLGFGKK
                     PAIVDIDVINETTVVKANQKAVRGVPSEINDLNEPVKSVSEATIDLGKVVAAVKEFEK
                     SGQTLDDDIKAQILKNEKEATTILEETGRIEILSEDLLTTTDATTSAKEDVNQEVVSE
                     NQADNFADLDIKIEPQYDIEQVVSEVTAYVQEILDDMDVEARIDTSHNRRTINIQVDT
                     NEPGRVIGYHGKVLKALQLLAQNFLYNRYERNFYITINVNDYVEHRAEVLQGYAQKLA
                     ERVLAEQEAYHTDPMSSSERKIIHRIISKMDGLTSYSEGSEPNRYVVVDIEGNHD"
     gene            5043..5180
                     /gene="rpmH"
                     /locus_tag="U1404_001679"
     CDS             5043..5180
                     /gene="rpmH"
                     /locus_tag="U1404_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEM5348612.1"
                     /translation="MKRTFQPSKIRRARKHGFRSRMATKNGRRVLAARRRKGRKVLTV
                     A"
BASE COUNT         1593 a          989 c         1210 g         1415 t
ORIGIN      
        1 atttgttaat atatatagaa atgagaacac ttatgacaaa agaaaaattg attttagcct
       61 attctggtgg acttgatact tcagttgcga ttgcttggtt gaagaaagac tatgatgtca
      121 ttgcggtttg tatggatgtt ggagagggca aggatctcga cttcatacat gataaggcct
      181 tatcaatcgg tgctattgag tcccatgtat tggatgtaaa agaagaattc gctcaagaat
      241 atgtcctacc agccctacaa gcccatgcct actatgagca aaaatatccg ctggtatcgg
      301 ctctcagccg tcccttgatt tctaaaaagt tggtggaaat ggctcataag acaggagcaa
      361 ccactatcgc ccacggctgt actggtaagg gaaatgacca ggtgcggttt gaggtagcca
      421 ttgcagccct agatccaagc ttgaaagtcg tggctcctgt ccgtgaatgg aagtgggcgc
      481 gtgaagaaga aatcatcttc gccaaggaaa atggtgtacc agtcccagct gacctggaca
      541 gtccttactc agtcgaccaa aacctttggg gacgggccaa tgagtgcgga gttttagaaa
      601 atccatggaa tgaagcgcca gaagatgctt ttggcatcac tacttctcca gaaaatgcac
      661 cagatactcc tgagtatgtc gatattgagt ttaaagccgg tattcctgtt gctgtaaatg
      721 gtgaaaagtt aagtcttgct aatctcattc aaagactcaa tgtcattgct ggtaaacatg
      781 gtgtgggtcg gattgaccat gtggaaaatc gtttagtcgg aatcaagtca cgggaaattt
      841 atgagtgtcc aggtgctatt acccttctga cagcccacaa ggaaatcgaa gatttgaccc
      901 ttgtgcggga agtatcgcat ttcaaaccaa ttgtttcaaa tgaactctct aacttgattt
      961 acaatggcct gtggttcaac cctgcgacag atgccttgaa ggcctatctt gctcagaccc
     1021 aggcagttgt taatggcacc gcaaaagtaa aattgtataa ggggtcagcc aaagtggttg
     1081 ctcggaaatc tccaaattcc ctttatgacg aagatttggc aacctatacc agtgcagata
     1141 cctttgatca agatgcagca gttggtttca tcaagctttg gggattacca accaaggtca
     1201 atgcggaaat tcataaaaag agctagaaag taggagctta tggaagcaaa gaaattatgg
     1261 ggaggtcgct ttgaagccag tcttgaggaa tgggttgaag aattcggagc ctccattcgc
     1321 tttgaccaaa aattggccaa gtatgatatt caaggctcac tggcccatgt caagatgctg
     1381 gggcaaactg ggattgtctc tcaagctgag gctcaggtca ttcaagctgg tctggaagaa
     1441 ttgctagagg agtatgaggc tggcaagctg gtatttgata ttcgaaacga agacattcac
     1501 atgaatattg aaagtctatt gacggagaaa ataggctcag ttgcaggcaa aatccataca
     1561 gctcgttctc gtaacgacca agtggctacg gatatgcacc tctatctgaa ggataccctc
     1621 tttcaagttg tagacaaatt gaccaaccta cgtcagattt tggtagacct tgcacaggag
     1681 catgtggaaa caatcatgcc cggctatacc cacttgcaac atgcccagcc cattagtttt
     1741 gctcagcact tgttagccta ttacaacatg ttcagccgag acagtgagcg ctttgcattc
     1801 aacatgcagc atacaaatgt atccccactt ggtgcggcgg ccttggcagg gacgaccttt
     1861 ccgattgacc gtcggatgac gtctgatttg atgggatttg ccaagcccta tagtaattct
     1921 cttgatgctg tgtctgaccg tgattttatc ttggaatttc tgtcaaatgc cagtatcctc
     1981 atgatgcaca tgtcgcgttt gtgtgaagaa atcattaact ggtgttcaca tgaataccaa
     2041 tttgtcaccc tatccgatac cttttcaaca ggttcttcca tcatgcctca gaagaaaaat
     2101 ccagatatgg ctgagctgat tcgggggaaa acaggtagag tttatgggaa cttagttggc
     2161 ctactgacag tcatgaaatc ccttccttta acctataata aggacttgca ggaagacaag
     2221 gaaggcatgt ttgacacggc agaaacagtt ttgatttcaa ttgatatttt agcagggatg
     2281 ttgcaatcta tgacggtcca taaggaaagg atggctcaat cgacagagaa ggacttttca
     2341 aatgctacag agttggctga ttatttggct agtaaaggtc tgcccttccg ccaagcgcat
     2401 gagattgttg gaaaactggt cttggagtgt agcaaggcag gacactatct ccaggatgta
     2461 tcatttgaga cctatcaggc tatttcgcct cttattcaag cagatattta tgatgccttg
     2521 tcctccaaag ttgctgttag tcgtagaaat tcccttggcg ggacaggttt tgaatcgatt
     2581 gcagaccagt tgaaaagtgc caaagaggaa attcagaacg caaaaagcct ataaacggta
     2641 tgtttattgg cttttttgaa ttttgtggta taatagaagt aattttgaaa gatggagtgg
     2701 cagtttgaaa aaaagctatc gtgtcaagcg tgaacgagat tttaatgaca tttttacaaa
     2761 aggaaacaat gtcgccaatc ggaggtttgt tgtctaccga ttacctaaag agcaaaagca
     2821 tttccgagta ggtttatctg tcagcaaaaa attgggaaac gctgtcatgc gaaataagat
     2881 taagcgcagg attcgtcaca tcttaattga atgccaacat caactggtag cagatgactt
     2941 tgttatcatt gctcgaaaag gtgtggagga attgtcctat caggaaatga agcaaaacct
     3001 catccatgtt ttgaaactag ctaaactata ccaggaaggt gttgtgattg aaaaagaaag
     3061 ttaaatgggc aggtctactg gtagcatctc taattgtttt aacagcctgc ggaacagggc
     3121 cggtgaccag tcaatctaca gatgcgtggg atagattaat ttactggttt gccagcatta
     3181 ttcagttcct atctatcaac ggtcaaattg gaatcggtat tatacttttt accattttaa
     3241 ttcgaaccct tctgttgcct ttgttccaaa tacagatgaa ttcctcacgg aagatgcagg
     3301 agcttcaacc tcagctgaaa aagttgcaag cggagtatcc aggaacggat atggaaagtc
     3361 gccagcagct ttatgaagca acgcaagctc tctacaaaga gaatggcgtc agcatgagag
     3421 cgtccatgat tccgctcttt attcaaatgc caatcctttt ggccctcttt caagctctga
     3481 cacgtgttga agccttgaaa gtaggtcact tcctttggtt aaatcttggg gagccggatc
     3541 cgttctttat tttgccgatt atggctgcag tgtttacatt cctcagctca tggttgacca
     3601 ataaatcagc aattgagaag aatatggcta tgacaattat gacctatgtc atgcccgtga
     3661 tgatcttttt ctttgctgtg gcagctgcta gtggggtggc tttgtattgg acagtgtcaa
     3721 atgcctatca ggttgctcaa accttggtgt tcaataatcc gtttaaaata atagcagagc
     3781 gtcaagcgaa aattgatgcg gaaaaagaac gtcaggcaaa aatccgacgg gcacagaaaa
     3841 aagcacagaa aaagaaatag gaaaactagg agagagaaga tgaaatttac aggagcaagt
     3901 gttgaagagg ccatccagaa tggcttggta gagctaaata ttcctcgaaa aaaagcacat
     3961 attactgtgg ttgcgcgtga gaaaaaaggt ttccttggtt tcggtaaaaa gccagcgatt
     4021 gtggatattg atgtcatcaa tgaaacaacg gttgttaagg ctaatcagaa agcagttcgt
     4081 ggcgttccaa gtgaaattaa tgacctcaat gaaccagtaa aaagcgtttc agaggctacg
     4141 attgacctag gaaaagttgt tgcagcggta aaagaatttg aaaagtctgg tcaaacgctt
     4201 gatgatgata ttaaagcgca gatcttgaaa aatgaaaaag aagcgacaac gattttggaa
     4261 gaaacaggtc ggattgaaat tctttcagaa gatttactaa ctactacaga tgcaacaaca
     4321 tctgctaagg aagacgtaaa tcaagaagtc gtctcagaaa atcaagcaga taattttgct
     4381 gatttagata ttaagattga gccccagtat gatattgaac aagttgtttc agaagtgaca
     4441 gcttatgtac aagaaattct ggatgatatg gatgttgagg cgcgtattga tacaagtcat
     4501 aatcgccgta caatcaatat tcaagtggat accaatgaac caggtcgtgt tatcggttat
     4561 cacggaaaag tcttaaaggc tttgcaactt ttggctcaga acttcttata caaccgttat
     4621 gagcgtaatt tctatattac aatcaatgtg aatgattatg tagaacaccg cgcagaggtt
     4681 cttcaaggct acgcacaaaa attggcagaa cgtgttttgg cagagcagga agcctaccat
     4741 acagatccga tgtcaagtag cgaacgtaaa attatccacc gcattatctc taaaatggat
     4801 ggtttgacga gctattcaga aggtagcgaa ccaaaccgct atgtcgttgt agatattgaa
     4861 ggaaatcatg attaaaaaga ggctagtcct cttttttcaa tgattttctg attctttcct
     4921 aaaagtatgg cagaatagct tgacaaacga acagaattta tataaaatag tttggtatgt
     4981 ttagtaactg atcaaaacta gccggctaaa cgaatacaag aatctaagag gaggtattca
     5041 tcgtgaaacg tacttttcaa ccaagtaaaa tccgtcgcgc gcgtaaacac ggtttccgta
     5101 gccgtatggc aactaaaaac ggccgtcgcg tgttagctgc tcgtcgccgt aagggacgta
     5161 aagttcttac agtagcataa gaagatgaaa agagaagcca gcagaaa
//
LOCUS       DASGCC010000127         5165 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.128, whole genome shotgun sequence.
ACCESSION   DASGCC010000127 DASGCC010000000
VERSION     DASGCC010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5165
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.128"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..1826
                     /locus_tag="U1404_001680"
     CDS             <1..1826
                     /locus_tag="U1404_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase N-terminal domain-containing
                     protein"
                     /protein_id="HEM5348613.1"
                     /translation="SSVQNTLNLNINLGRNKRFNDEVSKLDSSTILMSASAGGRKGVR
                     FKVVCHSKVTDGEVNVLGETIVIRNATEVFLYLKSMTDYWGNLDISSLQGEFSSIDYF
                     TEKDEHVKKYQEQFNRVDFKLDYSKDCLSIPTNLLLEDTKKYSNYLTNLLFHYGRYLL
                     ISSSQPNGLPANLQGIWCDELNPIWGSKYTININTQMNYWMVGPCDLPEVEYPLFDML
                     ERMREPGRLTAKKMYGARGFTAHHNTDGFGDTAPQSHAMGAAIWVLTIPWLCTHIWEH
                     YLYFQDERILREHFEMIKEAFLFFEDYLFEVDGYLMTGPSVSPENKYRLKNGIEGNAC
                     LSSTIDNQILRYFCDSCIGIAKQLVDNSDFISRVKELKKKLPKTKIGSNGQIQEWLED
                     YEEVEPGHRHISPLFGLYPYNEIDIHKTPELAEAAKITINRRLSNANFLSSQDREQAI
                     NNWLVSGLHASTQTGWSAVWLIHFFARLYQGEPAYNQINGLLHNATLGNLFLDHPPFQ
                     IDGNLGLVSGICELLVQSHHNWLSLIPALPSAWSAGEVKGLRVRGGYKVSFAWKNRYI
                     TFLRLEGGDSGKAVKIKIGNKTNERCIETIFNSEQVIELNL"
     gene            1930..2793
                     /locus_tag="U1404_001681"
                     /pseudo
     CDS             1930..2793
                     /locus_tag="U1404_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            2834..4600
                     /locus_tag="U1404_001682"
     CDS             2834..4600
                     /locus_tag="U1404_001682"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HEM5348614.1"
                     /translation="MIQHPRIGIRPTIDGRRQGVRESLEVQTMNMAKSVADLISSTLK
                     YPDGEPVECVISPSTIGRVPEATASHELFKKSNVCATITVTPCWCYGSETMDMSPDIP
                     HAIWGFNGTERPGAVYLAAVLASHAQKGIPAFGIYGRDVQEANDTDIPEDVKEKLLRY
                     ARAALATGLMRDTAYLSMGSVSMGIGGSIVNPDFFQEYLGMRNESVDMTEFTRRIDRG
                     IYDPEEFERAMVWVKEHIKEGVDLNREDLILSKEEKEKQWEFVVKMFMIGRDLMQGNP
                     RLAELGFEEEAVGHHALVAGFQGQRQWTDHFPNGDFMETFLNTQFDWNGIRKPFVFAT
                     ENDSLNGVSMLFNYLLTNTPQIFADVRTYWSPEAVKRVTGHTLEGNAADGFLHLINSG
                     SCTLDGTGQASRDGKPVIKPFWELEESEVQAMLDNTDFPPANREYFRGGGFSTRFLTK
                     GDMPVTMVRLNLLKGVGPVLQIAEGYTLELPEDVHHTLDNRTDPGWPTTWFAPRLTGK
                     GAFKSVYDVMNNWGANHGAITYGHIGADLITLASMLRIPVNMHNVPEEDIFRPKNWSL
                     FGTEDLESADYRACQLLGPLHK"
     gene            4736..>5165
                     /locus_tag="U1404_001683"
     CDS             4736..>5165
                     /locus_tag="U1404_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM5348615.1"
                     /translation="MATFYVPAVNLIGKGVVNEVGPYIKELGYKKALLVTDKFIEGSD
                     ILPKVLKPLDTEGIEYVIFSDVEPNPTCKNVTDGVAALEEHGCDFIISLGGGSPQDAA
                     SCISIIATNGGKPQDYEGLHKSAKKGLPVVAINTTAGTSAE"
BASE COUNT         1645 a          849 c         1108 g         1563 t
ORIGIN      
        1 tgtcatcagt ccaaaacaca ttaaatttaa acattaatct gggtagaaat aaacggttta
       61 atgatgaagt atctaaactg gattcaagta caattttaat gtcggcctct gctggaggta
      121 gaaaaggtgt tcggtttaaa gtagtatgtc attctaaagt tacggatggt gaagtaaatg
      181 tattgggaga gacaatagtt attcggaatg ctacagaggt atttctttac ctcaaatcaa
      241 tgacggatta ttggggaaat ctagatattt cttctcttca gggagaattt agtagtattg
      301 attactttac agaaaaagac gaacatgtaa aaaaatatca ggaacaattt aatagagttg
      361 attttaaact agactatagt aaagattgtc ttagcattcc aacgaatcta cttcttgaag
      421 acactaaaaa gtatagtaac tacttgacta acttgttatt tcattatgga agatatctgt
      481 taatatcgtc tagtcaacca aatggtttac ctgccaatct tcaaggaata tggtgtgatg
      541 aattaaatcc aatttggggt tctaaatata cgattaatat caatactcaa atgaattatt
      601 ggatggtagg tccatgtgat ttaccagaag tagaatatcc attatttgat atgctcgaaa
      661 gaatgagaga accgggaaga ctaaccgcta agaaaatgta tggagctaga ggttttacag
      721 cacatcataa tacggatggt tttggcgata cggctcccca atctcatgcc atgggggctg
      781 caatttgggt attaactatt ccatggttat gtactcatat ttgggaacac tatttatatt
      841 tccaagatga gcgtatcctt agggaacatt ttgaaatgat aaaagaagca tttcttttct
      901 ttgaagatta tttatttgag gtggatggct acttgatgac aggtccaagt gtctcaccgg
      961 aaaataaata tcgcttaaaa aatggtattg aaggaaatgc ttgtctatca tctacaattg
     1021 ataatcaaat tctaagatat ttttgtgatt catgtattgg tattgcaaaa caattagtag
     1081 acaattcgga ttttattagt cgtgtgaagg agttaaaaaa gaaattacct aaaacaaaaa
     1141 taggtagtaa tgggcaaata caagaatggc tagaggatta tgaagaagta gagccaggtc
     1201 acagacacat ttcacctcta tttgggcttt atccttataa tgagattgat attcataaaa
     1261 ctcctgaatt agcagaagca gctaaaatca ctataaatag gagattatca aatgctaact
     1321 ttttatcttc acaggatagg gaacaagcga ttaataattg gttagtaagt ggtttgcatg
     1381 ctagtacaca aacaggttgg agcgctgtat ggttgattca tttttttgcg agactatatc
     1441 aaggtgaacc tgcttataac cagattaatg gtttgttaca taatgcgact cttgggaatt
     1501 tatttcttga ccatccacca tttcaaattg atggtaattt aggtttggtg agcggaattt
     1561 gtgaattatt agtacagagc catcataatt ggttatcact tattccagct ttaccttctg
     1621 catggtcagc aggagaagtg aaagggctca gagtaagagg aggatataag gtatcgtttg
     1681 cttggaaaaa taggtatata acttttctga gattagaggg gggagattca ggtaaagcag
     1741 taaaaataaa aattggtaat aaaacgaatg agcgatgtat tgagacaata tttaattcag
     1801 aacaagttat cgaattaaat ttgtaggtat aagcaaataa tactcgtggt gctagttcat
     1861 ttgaaactac aataaaaagc ccaaatggac tatactgtaa gtgacgaaac atacaggagg
     1921 ttagtccaaa tgagctactt acagtatact gctaaatctc atcatttgca atggagtgta
     1981 cgccaattat ctcaaatttg tcatcacttt taccacaact attgcccgga ttcctttaaa
     2041 catcggcgta atgttggctt agttaaagtt tcagatgaag cgctccttgt cttacttttg
     2101 atacaagcag aactagggat aacatcacaa cgccatttct acaccatctg ccacctcttc
     2161 ccttgcggtc agttactaga aagaagtcgt ttcaatcgtc ggtctaaaca attgatttgg
     2221 ctcgtccaat taatccgaaa agctatgagc gaaatgcttc catctgataa actagccatt
     2281 atagatagtt ttcctttgtc actttgccaa ccggttcgca accacagagc aactattttt
     2341 aatggattcg ccgatattgg ctacaacgcc tctaaacatc tttggttcta cggcttcaaa
     2401 gttcatatgc tggtgacctt atcaggttat attctgaact atgttgtcac gccagcctct
     2461 gtccatgata tcaaggtggt tatgagctat tagagggggt gtaagcaatc ggttatctta
     2521 ggtgatctag gctacctaag cagtgaactc aaaaaggact tagagcaaga aggttaccat
     2581 ctatggacgc cgtttcgtaa aaacatgact gggtccgaag aacataacaa ttggaaagtg
     2641 atggccttga gacgaactat tgaaacacgt ttttctgaac tgtgtcgtct ctttgacatc
     2701 gaacatacat tagctagagg tctagctgga ctacagttac gaatggaaca aattattcta
     2761 gctcataact tacgctattt tgaaatgaac tagcaccacg ggtaaataat atataaaaca
     2821 agaggaaagt attatgatac aacatccacg tattggtatt cgtccgacta ttgatggtcg
     2881 tcgtcaaggt gtacgagaat cacttgaagt acagacaatg aacatggcta aaagtgtggc
     2941 agatcttatt tcaagtacat tgaaatatcc agatggagaa cctgtggaat gcgtgatttc
     3001 tccatctacc attggtcgtg ttccagaggc tacagcttca catgagttgt tcaaaaaatc
     3061 aaatgtttgt gcaacaatta cagtcacacc atgctggtgt tatggtagtg aaactatgga
     3121 tatgtctcca gacattcctc atgctatttg gggatttaat gggacagaac gtccaggagc
     3181 tgtctatctt gcagctgttc tagcttcaca tgctcaaaaa ggtattccag cgtttgggat
     3241 ttatggaaga gatgttcagg aagctaatga tacagatatt ccagaagatg tcaaagaaaa
     3301 acttttacgt tatgcccgtg cagctcttgc aactggtttg atgcgagata ctgcttacct
     3361 atcaatgggt agtgtatcaa tggggattgg tggttctatt gtgaatccag atttcttcca
     3421 agaataccta ggaatgagaa atgagtctgt agatatgacg gaatttacac gtcgtattga
     3481 ccgtggtatt tatgacccag aagagttcga acgtgctatg gtttgggtaa aagaacatat
     3541 taaagaaggt gttgacctaa atcgtgaaga tttgattctc tctaaagaag agaaagaaaa
     3601 acaatgggaa tttgtggtaa aaatgttcat gattggtcga gatcttatgc aggggaatcc
     3661 tcgtttagca gaacttggtt ttgaggaaga agcagttggt caccatgctt tagtagctgg
     3721 ttttcaaggt caacgccagt ggacagacca tttcccaaat ggagatttta tggaaacttt
     3781 cctcaatact cagtttgact ggaatggtat tcgtaaacca tttgtatttg caacagagaa
     3841 tgattcacta aatggtgtgt ctatgctctt taattactta ttgacgaata ccccacaaat
     3901 atttgctgac gtgcgtactt attggagtcc agaggctgtt aaacgtgtaa caggacatac
     3961 tctagaaggt aatgccgcag atggcttctt acatttgatt aactctggct cttgtacatt
     4021 agatggtact gggcaagcta gtcgtgatgg aaaacctgtt attaaaccat tctgggagtt
     4081 ggaagaaagt gaagtgcagg ctatgcttga taacacagac ttcccaccag caaaccgcga
     4141 atacttccgt ggaggaggat tctcaactcg cttcttgacg aagggggata tgccagtaac
     4201 aatggtacgt ctcaatcttt taaaaggagt tggtccagtg ctacaaattg cagaaggtta
     4261 cacacttgaa cttcctgaag atgttcacca tactttagat aatcggacag atccaggatg
     4321 gccaactact tggtttgctc cacgtttgac aggaaaaggt gcttttaagt ctgtatatga
     4381 tgtcatgaat aattggggag ctaatcacgg agcgataaca tatggacaca ttggtgcaga
     4441 cttgattact ttggcttcta tgttgagaat tcctgtcaat atgcataatg tacctgagga
     4501 agatatcttt agacctaaaa attggtcttt atttggaaca gaagatttag aatcagcgga
     4561 ctatcgtgca tgtcagttgt tgggaccact acataagtaa aacttgtttg tataggaggt
     4621 gagcttacgt ccctcctata cttttaaaaa acgcttgtta attatttcac aaatgtatag
     4681 catagatttt aaaaataata atagaaaaag cgcgaaggcg taggaggaaa attatatggc
     4741 tacattttat gttccggcag tcaaccttat tggaaaaggt gttgtaaatg aagtgggtcc
     4801 ttatatcaag gaacttggct ataaaaaggc acttttggtg acagataagt ttatcgaagg
     4861 aagtgacatt ttgcctaagg ttttaaaacc gctagataca gaaggaatcg aatatgtcat
     4921 ctttagcgat gtagagccaa accctacttg taagaatgtc acagatgggg tagctgcttt
     4981 ggaagaacat ggatgtgatt ttatcatcag tcttggtggg ggttctccac aggatgcagc
     5041 tagttgtatt tctatcatag ctacaaatgg tggaaaacca caggattatg aaggacttca
     5101 taagtctgct aaaaaaggct tgccagttgt ggctatcaat acaacggcag gaacttctgc
     5161 agaaa
//
LOCUS       DASGCC010000128         5115 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.129, whole genome shotgun sequence.
ACCESSION   DASGCC010000128 DASGCC010000000
VERSION     DASGCC010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5115
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.129"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..961
                     /locus_tag="U1404_001684"
     CDS             <1..961
                     /locus_tag="U1404_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017647558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEM5348616.1"
                     /translation="DLASKIGSLLSSSLSLDLGEMTETIKQVTYIFPKYAENRLTWED
                     TLKTTNLTISEKVGWQFGSPPHALLAGSTKSGKTVMLENLVAQYLTLGAEIKLLDPKK
                     GELSWLVGKKLEDRLGYKVVYNSPFQIAAGLREAVEEMNIRFQIMADNPDTYISKGKV
                     LSWAEVKGNYPLVIVLDEGIAFKTEAETTKEGKQAYQEAMSNLGSLLVKSRQASIEVI
                     VGLQRASSDFIPTYMRQNFGVALLLGSTTSDLDSCRMMFSSQDVDYKTCGIGTGYIQI
                     DGVIPQPRYVETPFKSDELDFEEYFDKACDCYWSIRNNDGLSD"
     gene            1238..1657
                     /locus_tag="U1404_001685"
     CDS             1238..1657
                     /locus_tag="U1404_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348617.1"
                     /translation="MTYNMTDTTLKIGQLDLDMTQFEVPKKIVILSAKVNNRYNEVNG
                     EKIKTEEVTKITCTALDADKVKVLTEMGISTDDLKAINLEIVGNVDKVATLAQNESLL
                     NVPIELVKPKVRLAWNMARSNWAGVKLVCEDIKILGA"
     gene            1662..2678
                     /locus_tag="U1404_001686"
     CDS             1662..2678
                     /locus_tag="U1404_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEM5348618.1"
                     /translation="MNTVRIDYFAVTVKNISPESVLTDILLIPLEDFTLNNWGINKYQ
                     RHYACSEIKVYFNEDRTSMGVFIELKGQGCRQYEEFLDGNENNWIALIGRLYQYSVNF
                     TRLDIAHDIFDGSLDVQRVYDYCKKGLCILKAKHFEYHEKSVLENGERVGETVAIGSR
                     GNQQWCIYNKRMEQLSKQELVEYPSWIRAELRCWQDKANIIAEQLFLKRPLSSIYFEA
                     INGHYRFVKPNATDTNRWRRKKVKWWLDYLKTENQTVLSVERTKPTLRQSEAWTEKQV
                     AKTLAKVYTAKYQAYDVQKAEDYIQGLLKEGLSRLTDNDEKDIEQYIREQNSSPLWGQ
                     KKTT"
     gene            2739..2945
                     /locus_tag="U1404_001687"
     CDS             2739..2945
                     /locus_tag="U1404_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3173 domain-containing protein"
                     /protein_id="HEM5348619.1"
                     /translation="MIATVNKNDLVALGFSEGTSKRIIRQGKELLIARGFRVYQNKRV
                     GTIPASIATELLGFDVSLGAHHDS"
     gene            2935..4068
                     /locus_tag="U1404_001688"
     CDS             2935..4068
                     /locus_tag="U1404_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000155506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM5348620.1"
                     /translation="MTVKKAKNGTWTVDISDGFHPVTKKRIRIIRKGFKTKKEALELE
                     QYIRVVELKEKRFDFLVTTDMLFDILEEEDRQNNRKISYISTQRNNYERHIKPYFINT
                     NLNKLSYEHIFEFREYLKIKPKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKN
                     PVENIRKLPISKPTINFWNVEEFNEFRKLITSDEISYDLFFTIAFFTGMRLGEIVALT
                     WYDINLITNSIHITKTAYFVNGTNHINSTKTRAGTRRITINHKLARMLADWKEKQKDL
                     LKEFTTDTENLQVIQSTPLPMTKNMIDKKFKQILARNDYLKKIRIHDLRHSHASLLIN
                     QGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANKLDDIF"
     gene            complement(4155..4238)
                     /locus_tag="U1404_001689"
     tRNA            complement(4155..4238)
                     /locus_tag="U1404_001689"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4202..4204),aa:Leu,seq:caa)
     gene            complement(4250..4321)
                     /locus_tag="U1404_001690"
     tRNA            complement(4250..4321)
                     /locus_tag="U1404_001690"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4287..4289),aa:Gln,seq:ttg)
     gene            complement(4333..4405)
                     /locus_tag="U1404_001691"
     tRNA            complement(4333..4405)
                     /locus_tag="U1404_001691"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4370..4372),aa:His,seq:gtg)
     gene            complement(4413..4483)
                     /locus_tag="U1404_001692"
     tRNA            complement(4413..4483)
                     /locus_tag="U1404_001692"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4449..4451),aa:Trp,seq:cca)
     gene            complement(4491..4571)
                     /locus_tag="U1404_001693"
     tRNA            complement(4491..4571)
                     /locus_tag="U1404_001693"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4535..4537),aa:Tyr,seq:gta)
     gene            complement(4592..4664)
                     /locus_tag="U1404_001694"
     tRNA            complement(4592..4664)
                     /locus_tag="U1404_001694"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4629..4631),aa:Phe,seq:gaa)
     gene            complement(4680..4753)
                     /locus_tag="U1404_001695"
     tRNA            complement(4680..4753)
                     /locus_tag="U1404_001695"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4717..4719),aa:Met,seq:cat)
     gene            complement(4763..4852)
                     /locus_tag="U1404_001696"
     tRNA            complement(4763..4852)
                     /locus_tag="U1404_001696"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4814..4816),aa:Ser,seq:tga)
     gene            complement(4861..4932)
                     /locus_tag="U1404_001697"
     tRNA            complement(4861..4932)
                     /locus_tag="U1404_001697"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4897..4899),aa:Glu,seq:ttc)
     gene            complement(4939..5012)
                     /locus_tag="U1404_001698"
     tRNA            complement(4939..5012)
                     /locus_tag="U1404_001698"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4976..4978),aa:Ile,seq:gat)
     gene            complement(5043..5113)
                     /locus_tag="U1404_001699"
     tRNA            complement(5043..5113)
                     /locus_tag="U1404_001699"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5079..5081),aa:Gly,seq:tcc)
BASE COUNT         1709 a          935 c         1099 g         1372 t
ORIGIN      
        1 tgatttagcc tctaaaattg ggtcactctt atctagttcg ctttcgttag atttgggaga
       61 gatgacagag accatcaagc aagtgaccta tatttttcct aaatatgcag aaaatagact
      121 gacttgggaa gacaccctca aaactacaaa tttgacaatc tccgagaaag taggttggca
      181 gtttggctct ccgcctcacg cccttttggc tggttcgacc aagtcgggaa aaacggtgat
      241 gctagagaac cttgtggctc aatacttaac tttaggagct gaaataaaat tgcttgaccc
      301 caaaaaaggg gagttgtctt ggctagttgg taagaaatta gaagatagat taggttataa
      361 ggtagtttat aattctcctt ttcagattgc agcaggttta agagaggcag ttgaagagat
      421 gaacattcgc tttcaaataa tggcagataa tccagacact tatatttcca aagggaaagt
      481 attatcttgg gcagaggtta aagggaatta cccacttgtt attgtgctag atgaaggaat
      541 tgcttttaag acggaagcag agaccaccaa agagggtaag caagcctatc aagaagctat
      601 gtctaatctt gggagcctct tggttaaatc tcgtcaagcc tctatcgaag ttatagtagg
      661 tctgcagaga gcctcaagtg acttcatacc tacatatatg aggcagaatt ttggggttgc
      721 tctgttattg ggttcaacga cctcagactt ggattcttgt cggatgatgt tttcaagtca
      781 agatgttgat tataaaactt gcggtattgg gacaggctac attcaaatag acggagtgat
      841 tccacaacct agatatgttg aaacaccttt taagtctgat gaactagact ttgaggaata
      901 ttttgataag gcttgcgact gctactggag tattagaaat aatgacggtc tttcggacta
      961 gcgaaatagg gacgattgcc cagggggcag aatcgagcgg agcgttcctc ttttcgctag
     1021 gagaaagagc caaccgactg ctttgcagga ggtcagaaaa atacccccag tactaatagg
     1081 gggtgcacac atacatgaaa tgtactctaa acccttgata cgtaaggggt tacggcttgt
     1141 tggttatacc gaagtcattg aaacccttgt gggagaaggg attgagtcgc ttttcgtgta
     1201 ggatacgact ttttgaatag aaaatggagt aattattatg acttacaata tgacagatac
     1261 tacccttaag attgggcaac ttgatttgga tatgacacag tttgaagtgc cgaaaaaaat
     1321 tgttattcta tctgctaaag taaataatag gtataacgag gttaatggcg agaaaatcaa
     1381 aactgaagaa gttacgaaaa tcacttgtac tgcccttgat gccgataaag tgaaagttct
     1441 aactgaaatg ggaatttcta ctgatgactt gaaagctatc aacctagaaa ttgtaggtaa
     1501 tgtagataag gttgctacgc tcgctcaaaa tgaatcactt ttgaatgttc cgattgagtt
     1561 ggttaagccg aaagttcgtt tagcttggaa catggcacga agtaactggg caggtgttaa
     1621 attagtatgt gaggacatta aaattctagg agcataaccc tatgaataca gtcagaattg
     1681 attattttgc agtaaccgtt aaaaatattt ctccagaaag tgttttaact gatattcttt
     1741 taattccttt agaagatttc acattaaata attggggaat aaacaagtac cagcgacatt
     1801 atgcttgttc tgagattaaa gtgtacttta atgaggatag aacttcaatg ggggttttta
     1861 tcgaattaaa agggcaaggt tgtcgccaat atgaagaatt tttggacggt aacgaaaata
     1921 attggatagc tttgataggt cggttgtatc agtattcggt taattttact cgcttagata
     1981 ttgctcacga catatttgac ggtagtttag atgttcagcg agtatatgac tattgcaaga
     2041 aaggtttatg tatcttgaaa gcaaagcatt ttgagtatca tgagaaatct gtcttagaaa
     2101 atggagaacg agttggagag acggttgcta taggttccag aggtaatcaa caatggtgta
     2161 tctacaataa acgtatggaa caacttagca agcaagagct tgtagaatat ccctcatgga
     2221 ttcgtgcgga acttagatgt tggcaggata aggcgaatat tattgcagag caattgtttc
     2281 taaagcgtcc tctgtcatct atctattttg aagctatcaa tggtcactat cgttttgtga
     2341 aaccaaatgc gacagatact aatcgttgga gaagaaaaaa ggtcaagtgg tggctagact
     2401 atctaaagac cgaaaatcag actgttttga gcgttgagag aactaagcct acattacggc
     2461 agtcagaggc ttggacagag aaacaagttg cgaagacatt ggcaaaagtc tatacagcaa
     2521 aatatcaagc ctatgatgtt caaaaggcag aggactacat tcaaggtcta ctaaaagagg
     2581 gcttgtcaag gctaactgat aatgatgaaa aggatataga gcaatatatt cgagagcaga
     2641 atagttctcc cttatgggga caaaaaaaga cgacttgaaa acaagtcgcc tctaaaaatt
     2701 aactaactag attataacaa aagaaaggaa agtgtccaat gatagcaacc gtaaataaga
     2761 atgacctagt tgcccttggt ttctctgaag gaacttctaa acgtatcatc agacagggga
     2821 aagagcttct aatagcaaga ggatttaggg tttatcaaaa taagcgtgtc ggaactatcc
     2881 ctgcttctat cgctactgaa ttacttggtt ttgacgtttc tttaggtgct catcatgaca
     2941 gttaagaaag caaaaaatgg aacttggact gttgatattt ctgacggctt ccacccagtt
     3001 accaaaaagc ggatacgaat cattcgtaaa ggtttcaaga caaagaaaga agctttagag
     3061 ttagaacaat atatccgtgt tgttgagtta aaagaaaaac gttttgattt tttggtaaca
     3121 accgatatgc tcttcgatat acttgaggaa gaagaccgac aaaataacag aaaaatcagt
     3181 tatatcagca cacaaagaaa caactatgag cgacatatca aaccttactt cataaataca
     3241 aacttaaata aattatctta tgagcacatt tttgaatttc gagagtatct caaaataaag
     3301 cccaaaaagc aaaacgatag ctctacgtta agtcataata cagtcaataa aataatgata
     3361 ctcctcaaaa agatttttga tactggtgta agaaagtcat tgatagataa aaatccagtt
     3421 gaaaatataa gaaaattgcc tattagtaag ccaactataa atttttggaa tgtagaagaa
     3481 tttaacgaat ttagaaaact tattacaagt gatgaaataa gttacgacct attctttacg
     3541 attgcctttt ttactggcat gcgattgggc gagatagttg cgttaacttg gtacgatata
     3601 aacttaatca ctaatagcat tcacatcaca aaaacagcat attttgttaa cggtacaaat
     3661 catatcaata gtacaaaaac tagagcaggt accagacgta ttacaatcaa tcataaatta
     3721 gcaagaatgc ttgcagactg gaaagaaaaa caaaaagact tacttaaaga atttacaaca
     3781 gatacagaaa accttcaagt gattcaaagc acaccactac caatgacaaa aaatatgatt
     3841 gataaaaaat ttaagcagat actggctagg aacgactatc taaaaaagat acgaatacac
     3901 gatttaaggc actctcacgc gtctttactt atcaatcaag gggaagatta tctagtcgta
     3961 aaagaacgtc ttggacacgc ctctatcacg actacaatag atacatattc ccacttatac
     4021 cctagtaaac aaaagacatt ggcgaacaaa ttggacgata ttttttagaa aatggaattt
     4081 tttggcaact tgaaaaagag caatagaaaa gataaaacaa aagacaaggc ttagaaacct
     4141 tgtctttata actataccgg cggccggggt cgaaccggca cgtccttgcg gacactggat
     4201 tttgagtcca gcgcgtctgc caattccgcc acgccggcat atagttgaac tggggtagct
     4261 ggattcgaac caacgcatga gggagtcaaa gtcccttgcc ttaccgcttg gcgatacccc
     4321 aatattaaaa taggcgagtg aggggaatcg aacccccgaa tgtcagagcc acaatctgat
     4381 gtgttaacca cttcaccaca cccgccatat aacacgggca gtaggaattg aacccacact
     4441 gaaggttttg gagaccttag ttctaccttt aaactatgcc cgtaaaggta tggagagaga
     4501 gggattcgaa cccccgaacc cgaaggagcg gatttacagt ccgccgcgtt tagcctcttc
     4561 gctatctctc cgaaatataa tattaaatta atggcgcgag acggaatcga accgccgaca
     4621 catggagctt caatccattg ctctaccaac tgagctaccg agccaaattc ttaaagaaat
     4681 tgcgggagca ggatttgaac ctacgacctt cgggttatga gcccgacgag ctacctagct
     4741 gctccatccc gcgataatag taaggaggat gtgggattcg aacccacgca cgcttttaca
     4801 cgcctgacgg ttttcaagac cgttcccttc agccggactt gggtaatcct ccgaataata
     4861 tagtccgtac gggattcgaa cccgtgttac cgccgtgaaa aggcggtgtc ttaacccctt
     4921 gaccaacgga ccatataatg ggcacgagtg gaatcgaacc accgacctca cgcttatcag
     4981 gcgtgcgctc taaccatctg agctacgcgc ccaaaccaag tttgggtatg aactatgttc
     5041 aaagcgggtg acgagaatcg aactcgcgac aacagcttgg aaggctgtag ttttaccact
     5101 aaactacacc cgctt
//
LOCUS       DASGCC010000129         4914 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.130, whole genome shotgun sequence.
ACCESSION   DASGCC010000129 DASGCC010000000
VERSION     DASGCC010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4914
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.130"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            135..716
                     /locus_tag="U1404_001700"
     CDS             135..716
                     /locus_tag="U1404_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HEM5348621.1"
                     /translation="MELNVFAGQEKSELSMIEVARAILEERGRDNEMYFNDLVNEIQN
                     YLEKSNSEIRAALPTFYSDLNVDGSFIPLGENKWGLRSWYAIDEIDEEVITLEEDDED
                     APKRKKKRVNAFMDGDDDAIDYGHDDPEDEDNYPGSVSSEYDDENPDDEKDEVESYDS
                     EINEIIPDDELDEEDVDLGEDDDEYSDEEVVDE"
     gene            909..2513
                     /locus_tag="U1404_001701"
     CDS             909..2513
                     /locus_tag="U1404_001701"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000170456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEM5348622.1"
                     /translation="MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYI
                     NIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKE
                     RKGEYLGATVQVIPHITDALKDKIKRAARTTDADVIITEVGGTVGDIESLPFLEALRQ
                     MKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPAG
                     QGIKNKLAQFCDVAPEAVIESLDVEHLYQIPLNMQAQNMDQIVCDHLKLDVPPADMTE
                     WTAMVNKVLNLQKKVKIALVGKYVELQDAYISVVEALKHSGYANDAAIELDWVNANDL
                     TAENVAERLGQAQGIIVPGGFGQRGTEGKIQAIRYARENDVPMLGVCLGMQLTCVEFA
                     RHVLGLEGANSFELDPETKYPIIDIMRDQIGVEDLGGTLRLGLYPSKLKRGSKAAAAY
                     DNQEVVQRRHRHRYEFNNDFREQFEKAGFVFSGVSPDNRLVEIVEIPENKFFVACQYH
                     PELQSRPNRPEGLYTAFVSAAIENEK"
     gene            2805..2890
                     /locus_tag="U1404_001702"
     tRNA            2805..2890
                     /locus_tag="U1404_001702"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2839..2841,aa:Leu,seq:aag)
     gene            3125..4006
                     /locus_tag="U1404_001703"
     CDS             3125..4006
                     /locus_tag="U1404_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HEM5348623.1"
                     /translation="MPLVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKQAP
                     VLIQTSMGAAKYMGGYKVARNLIANLIESMNITVPVAIHLDHGHYEDALECIEVGYTS
                     IMFDGSHLPVEENLAKAKEVVELAHAKGISVEAEVGTIGGEEDGIVGAGELAPIEDAV
                     AMVATGIDFLAAGIGNIHGPYPANWEGLDLDHLRKLTEAVPGFPIVLHGGSGIPDAQI
                     QEAIKLGVAKVNVNTECQIAFANATRKFAAAYEANEAEYDKKKLFDPRKFLADGVKAI
                     QASVEERIDVFGSANKA"
     gene            4401..4589
                     /locus_tag="U1404_001704"
     CDS             4401..4589
                     /locus_tag="U1404_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008536053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEM5348624.1"
                     /translation="MAKVCYFTGRKTVSGNNRSHAMNQTKRAVKPNLQKVTVLIDGKP
                     KKVWASARALKSGKVERV"
BASE COUNT         1656 a          866 c         1066 g         1326 t
ORIGIN      
        1 cgaatggaac aaattattct agctcataac ttacgctatt ttgaaatgaa ctagcaccac
       61 gggtaaagat tatctttgac tatttgcctt ttttagcgta aaatagaaag gaaagacaaa
      121 aaaggagaac agccttggaa cttaacgtat ttgcaggaca agaaaaaagc gaactttcca
      181 tgattgaagt agcccgtgct attttagaag aacgtggacg tgacaacgaa atgtatttca
      241 acgacttggt caatgaaatt caaaactacc ttgaaaaatc aaacagcgag attcgcgcag
      301 cccttccaac cttctattct gatttgaatg tggatggaag cttcattcca cttggcgaaa
      361 acaaatgggg cttacgttct tggtacgcaa tcgatgagat cgacgaagaa gtgatcactc
      421 ttgaagaaga tgacgaagat gcaccaaaac gcaagaagaa acgtgtcaat gccttcatgg
      481 acggtgatga tgatgcgatt gactatggac atgatgatcc ggaagatgag gataactatc
      541 cgggtagtgt atcatcagaa tacgatgatg aaaatccaga tgacgaaaaa gatgaagttg
      601 agtcctatga ttcagaaatc aacgaaatta tcccagatga cgaattggat gaagaggatg
      661 ttgatttagg tgaagatgac gacgagtatt cagatgaaga ggtcgtcgac gaataagaat
      721 tatatcccca tagattctta aaaataattt gacaagacta ctgaattacg ataggatatt
      781 atcgggcacc tcttttgagg tcggagctcc ctagcgatag ggagctattt ttgttttttc
      841 ttcaagttaa caggaagtat ccccacaaat tgcttcctat tagcctgaat cgtagaaaag
      901 gagtttgcat gacaaagtat atttttgtaa caggtggcgt tgtttcctct atcggcaaag
      961 ggattgtagc agccagcctg ggtcgtttat tgaagaaccg aggtctcaag gtaacaatcc
     1021 aaaaatttga tccatacatc aatattgacc cgggaacaat gagtccgtat caacacggtg
     1081 aagtttttgt gacggacgac ggcgcagaaa ccgacttgga ccttgggcat tatgagcgtt
     1141 tcatcgacat taacctgaac aaatattcaa atgttacaac aggtaaaatt tatagcgaag
     1201 tcctccgtaa agagcgtaaa ggggaatact taggggcaac agttcaagtt attccacaca
     1261 ttacagatgc tttgaaagac aaaatcaagc gtgcagctcg tactacagat gcagatgtca
     1321 tcattacgga agtgggtggt acagtaggtg atattgaaag cttgccattc cttgaagcgc
     1381 ttcgtcagat gaaggcagat gtcggttcag acaatgttat gtatatccat acaacactct
     1441 tgccttatct caaagcagca ggcgaaatga aaactaagcc aacacaacat tctgtaaaag
     1501 agttgcgtgg tctaggtatt cagcccaaca tgttggtaat tcggacagag cagcctgctg
     1561 gacaaggaat taaaaataaa ctggcacaat tctgtgatgt tgcaccagaa gcagttattg
     1621 agtccttgga tgtcgaacat ctttaccaaa tcccattaaa tatgcaagcg cagaacatgg
     1681 atcaaattgt ttgcgatcac ttgaagctcg acgtacctcc agcagatatg acagagtgga
     1741 cagcgatggt aaacaaggtt cttaatctcc agaaaaaagt aaaaatcgct ttagttggta
     1801 agtatgtaga attacaagat gcctatattt ctgtagttga agctctaaaa cactcaggat
     1861 atgcaaatga tgctgctatc gaattggact gggtcaatgc aaatgatttg acagcagaaa
     1921 acgtagctga acgtctagga caagcacaag gaattatcgt tcctggtggc tttggacaac
     1981 gtggtacaga agggaaaata caagccattc gttatgctcg tgagaatgac gtgccaatgc
     2041 taggggtctg cttgggaatg cagctgacct gtgtagaatt tgctcgtcac gttctcggtt
     2101 tagaaggtgc taacagcttt gaattagacc cagaaaccaa atatccaatt attgacatca
     2161 tgcgtgatca aattggagtg gaagatttag gaggaactct ccgtttaggt ctttatccaa
     2221 gcaagctcaa acgtggctcc aaggctgcag ctgcttatga taatcaagaa gttgtacaac
     2281 gtcgccatcg tcatcgttat gagtttaata atgacttccg tgaacaattt gaaaaagcag
     2341 gttttgtttt ctcaggtgtg tcaccagaca accgtttggt agaaattgtt gaaattccag
     2401 aaaataaatt cttcgttgcc tgccaatacc atccagaact acaatctcgt cctaatcgcc
     2461 ctgaaggttt gtatacagcc tttgtttcag cagctataga gaatgaaaaa taagtataac
     2521 aatttataga aggagattgg tattattcaa tcttctttta tattttatat aaagaaacga
     2581 aaaaggtgtc agtattttat agaagaaaat acgaaatacc acccccatat ggcatcattg
     2641 tctagatggt tttaagcatt atattttaag cattatatag tagaatattg caaaagaatc
     2701 agctaaatca atacgttttg gcaaaaaagg taaaaataaa aaataaaatt caaaaaaagt
     2761 gttgacaagg ctagttccta atgatatact agttcttgtg ttaagcgggg atggcggaat
     2821 tggcagacgc gcaggactaa ggatcctgtg accgctttag gtcgtgtggg ttcaagtccc
     2881 actctccgca tagtggacta gctaaggcta gtccttttgc tttgtctaga taagtgcaga
     2941 gcacgatata tgctagttca taaattacaa gaatgatacg aaacaggcat tattatggct
     3001 ttcatgaaaa gatatgtgaa agttttctca aaactagacg gtttcaacta gcattttcaa
     3061 aataaaaatg gtagaataga agagtatgag gtgcaacctc aaaaaatatt aggaggctat
     3121 cgaaatgcca ttagtttcag cagaaaaatt tgtccaagca gcgcgtgaca acggttatgc
     3181 agttggtgga tttaacacaa acaaccttga gtggactcaa gctatcttgc gtgcagcaga
     3241 agcaaaacaa gctccagttc ttatccaaac ttctatgggt gcagctaagt acatgggtgg
     3301 ttacaaagta gctcgtaact tgattgcaaa cttgattgaa tcaatgaaca ttacagttcc
     3361 agttgctatt caccttgacc acggtcacta cgaagatgca cttgagtgta tcgaagttgg
     3421 ttacacttct atcatgtttg acggttcaca ccttccagta gaagaaaacc ttgcaaaagc
     3481 aaaagaagtt gtagaattgg cgcacgctaa aggtatctca gttgaagctg aagttggtac
     3541 tatcggtggt gaagaagatg gtatcgtagg tgctggtgaa ttggctccaa ttgaagacgc
     3601 agtagcaatg gttgcaactg gtattgactt cttggcagca ggtatcggta acatccacgg
     3661 tccataccca gcaaactggg aaggtcttga ccttgaccac ttgcgtaaat tgactgaagc
     3721 tgtaccaggt ttcccaatcg tattgcacgg tggttcaggt attccagatg cacaaatcca
     3781 agaagcaatc aaattgggtg ttgctaaagt taacgtaaac accgagtgcc aaatcgcatt
     3841 tgcaaacgca actcgtaagt ttgcagcagc ttatgaagca aacgaagcag aatacgataa
     3901 gaaaaaactc tttgacccac gtaaattctt ggcagacggc gtgaaagcta tccaagcatc
     3961 tgttgaagag cgtatcgacg tattcggttc agcgaacaaa gcttaatgta actgcgaaga
     4021 aatctcagat ttcaagcaaa caaagcataa gtttcttaga ttaaaccaaa aaggattttc
     4081 tttcgagaat cctttttatt ataaatagtt gattaagttt gatctagttc tttgccatga
     4141 agaaatctac gatagaagtg agcagagaac agttaaaata taaaacgctc caaagttttc
     4201 atgactgtaa taacttagag aacgaagaat tatggatggg gcgcaaactg tagtattaaa
     4261 atatttacct atgaatatag atgctttaaa aaaataaaaa tgaaaataat tcttgccaag
     4321 tccaatcttt tctgttagaa tagtatggta tgtggtgcta gcacatccga tatatttgat
     4381 caaatgagga ggaagataca atggctaaag tatgttattt cactggtcgt aagactgtat
     4441 caggtaacaa ccgttcacac gctatgaacc aaactaaacg cgcagttaaa ccaaaccttc
     4501 aaaaagtaac tgttttgatt gatggtaaac ctaaaaaagt ttgggcttca gcacgtgcac
     4561 taaaatcagg caaagttgaa cgcgtataat aacaaagtcg ttagaaaaat ctagcgactt
     4621 ttgtttttgg aaaaaatagc ctagatataa agtcggtgag gagcaaattc ggccactaca
     4681 taataaacat gaaagaatat cagctatata gctcttcaca ttgctgttga aaagttaaca
     4741 aagaaggatc gttgtcaaaa ataaactgtg tattgatgtg gaagattttt ccaagttcga
     4801 acatttaaac ttggattgac attaggagtt gtacgagaga gcatccgtac gggttctaca
     4861 agaaaggaat cacgaactgg aagaatagag agtgtttaaa aaaatccaaa aaat
//
LOCUS       DASGCC010000130         4892 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.131, whole genome shotgun sequence.
ACCESSION   DASGCC010000130 DASGCC010000000
VERSION     DASGCC010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4892
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.131"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            181..2832
                     /gene="adhE"
                     /locus_tag="U1404_001705"
                     /gene_synonym="adhC"
     CDS             181..2832
                     /gene="adhE"
                     /locus_tag="U1404_001705"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HEM5348625.1"
                     /translation="MADKKVVSPEEKLVEARKHVDELVQKGLVALDEFRKLGQEEVDY
                     IVAKASVAALDKHGELAMHAFEETKRGVFEDKATKNLFACEHVVNNMRHTKTVGVIEE
                     DEVTGLTLIAEPVGVVCGITPTTNPTSTAIFKSLIALKTRNPIVFAFHPSAQESSAHA
                     ARVVYEAAVAAGAPENCIQWITKPSMEATSELMKHDGIATILATGGNAMVRAAYSCGK
                     PALGVGAGNVPAYVEKSANIRQAAHDIVMSKSFDNGMVCASEQAVIIDKEVYDEFVTE
                     FKSYKTYFVNKKEKALLEEYCFGVKANSKNCAEGKLNADIVGRPAAWIAEQAGFSVPE
                     GTNILAAEVAEIGEKEPLTREKLSPVIAVLKVEGRAEGLEAARQMVEFHGLGHSAAIH
                     TEDAELAKEFGTIVRAIRVIWNSPSTFGGIGDVYNAFLPSLTLGCGSYGRNSISDNVS
                     AMNLLNIKKVGRRRNNMQWFKVPSKTYFERDSIQYLQKCRDVERVMIVTDRAMVELGF
                     LDRIIEQLDLRRNKVVYQIFSDVEPDPDITTVYKGTELMRTFKPDTIIALGGGSPMDA
                     AKVMWLFYEQPTVDFHDLVQKFMDIRKRAFKFPELGKKSKFIAIPTTSGTGSEVTPFA
                     VISDKANNRKYPIADYSLTPTVAIVDPALVLTVPAHVTADTGMDVLTHATEAYVSTVA
                     NDFTDGLALQAIKLVFENLESSVKNADFVSREKMHNASTMAGMAFANAFLGISHSMAH
                     KIGGRFHTVHGRTNAILLPYVIRYNGTRPAKTATWPKYNYYKADEKYQDIARLLGLPC
                     STPEEAVAAYAQAVYDLGERIGIQMNLKAQGIDEKELKEHSRELALLAYEDQCTPANP
                     RLAMVDHMQEIIEDAYYGYKERPGRIK"
     gene            3247..4731
                     /locus_tag="U1404_001706"
     CDS             3247..4731
                     /locus_tag="U1404_001706"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006595200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEM5348626.1"
                     /translation="MTLVYQSTRDAKNTVSASQAILQGLATDGGLFTPISIPAVDLDF
                     SVLKDASYQEVAKLILSAFLDDFTADELDYCINNAYDSKFDTPAIAPVVKLKGQYNLE
                     LFRGSTIAFKDMALSILPYLMTTAAKKHGLENEIVILTATSGDTGKAAMAGFADVPGT
                     QIIVFYPRDGVSKVQELQMTTQTGANTHVVAIDGNFDDAQTNVKRMFNDEALRAKLAA
                     KKLQFSSANSMNIGRLVPQIVYYVYAYAQLVKTGEIAAGDKVNFTVPTGNFGNILAAY
                     YAKQIGLPVGKLICASNDNNVLTDFFSTGVYDKNRTFRVTTSPSMDILVSSNLERLIF
                     HLFDNDAAKTAELMEALNTAGQYDIQGADADILSLFAAAFATEEETAAEIKRVYDESD
                     YIEDPHTAVASAVYKQYVEQTGDQTPTVIASTASPYKFPVVAVEAVTGQSGLSDFEAL
                     AKLHEISGVALPPAVDGLETAPVRHNTVVAAADMQAEVERYLGV"
BASE COUNT         1441 a         1037 c         1083 g         1331 t
ORIGIN      
        1 aacaaagcag aaacaaatct gaatgttttc tgaaaatagg aaaaagtaag cgctttctat
       61 aacgaaacag aaaaaatgtg aaaaaattaa caatttccct ttacaaataa aataaaaaat
      121 agtagaataa cattgtgaaa aagttaacaa atagttagcg agtatatttg gaggaacaca
      181 atggctgata aaaaagtagt atcaccagaa gaaaagttgg tagaagcgcg caagcacgtc
      241 gatgagcttg ttcaaaaagg tttggttgct cttgatgagt tccgtaaact tggtcaagaa
      301 gaagtagact atattgtagc gaaagcttcg gttgcagccc ttgataaaca tggcgaattg
      361 gcaatgcacg cctttgaaga aactaagcgt ggtgtattcg aagacaaggc tactaagaac
      421 ttgtttgctt gtgagcacgt tgtcaataac atgcgtcaca cgaaaactgt tggtgttatt
      481 gaagaagatg aagtgacagg tttgactttg attgctgagc cggtcggtgt tgtttgtggt
      541 atcacaccaa caacaaaccc aacttctaca gcaatcttta aatcattgat tgccttgaag
      601 acacgtaatc cgattgtctt tgccttccac ccatctgcac aagaatcttc tgctcatgca
      661 gctcgtgttg tctatgaagc agctgtggca gctggtgctc ctgaaaactg tatccagtgg
      721 attacaaaac catctatgga agcaacatct gagttgatga aacatgatgg tattgcaaca
      781 atccttgcaa ctggtggtaa cgcaatggtg cgcgcagctt actcttgtgg taaacctgcc
      841 cttggtgtag gtgcaggtaa cgttccagcc tatgttgaaa aatcagcaaa tattcgtcag
      901 gcagcacatg acatcgttat gtctaagtca tttgacaacg gtatggtctg tgcgtcagaa
      961 caagcagtta tcattgataa agaagtttac gatgagtttg taacagagtt caaatcttac
     1021 aaaacttact tcgttaataa gaaagaaaaa gctcttcttg aagaatactg cttcggtgtg
     1081 aaagctaaca gcaaaaactg tgctgaaggt aaattgaacg cagacatcgt tggtcgccca
     1141 gctgcatgga tcgctgagca ggccggcttc tcagtaccag aaggtacaaa catcttggca
     1201 gctgaggttg ctgaaatcgg tgaaaaagaa ccattgactc gtgagaaatt gtcacctgtt
     1261 attgccgtct tgaaagttga aggtcgtgca gaaggtcttg aagcagctcg ccaaatggtt
     1321 gaattccacg gtctcggtca ctctgcagct attcatacgg aagacgcaga attggcgaaa
     1381 gagtttggta caatcgtacg tgctatccgt gttatttgga actctccatc tactttcggt
     1441 ggtatcggtg atgtttacaa cgcattcttg ccatcattga cacttggttg tggttcttac
     1501 ggacgcaact caatcagtga taacgtaagt gctatgaact tgctcaacat caagaaagta
     1561 ggaagacgta gaaataatat gcaatggttt aaagttcctt ctaaaacata cttcgaacgt
     1621 gactctatcc aatatctcca aaaatgccgt gacgttgaac gtgtcatgat cgttacagac
     1681 cgtgccatgg tagaacttgg attcctagat cgtatcatcg aacaattgga ccttcgtcgt
     1741 aataaagttg tttatcaaat cttctcagac gttgagccag atccagacat cacaacggtt
     1801 tataaaggta cagaattgat gcgtaccttc aaaccagata caatcatcgc actcggtggt
     1861 ggttcaccaa tggatgctgc caaagttatg tggctcttct acgaacaacc aacagttgat
     1921 ttccatgacc tagttcaaaa attcatggat atccgtaaac gtgccttcaa gttcccagaa
     1981 cttggtaaga aatctaagtt tatcgcgatt ccaactacat caggtacagg ttcagaagta
     2041 acaccgtttg ccgtaatctc tgataaagca aacaaccgta aatacccaat cgctgactac
     2101 tcattgacac caactgtggc aatcgttgac ccagcactcg tattgacagt acctgcacac
     2161 gttacagcgg atactggtat ggacgtattg actcacgcta cagaagcata cgtttcaaca
     2221 gtagccaacg actttacaga tggtttagca cttcaagcta tcaaactagt atttgaaaac
     2281 cttgaaagct cagtgaagaa tgctgacttt gtatcacgtg agaaaatgca caacgcatca
     2341 actatggcag gtatggcctt cgccaacgca ttcctaggta tttctcactc aatggctcat
     2401 aagattggtg gacgtttcca taccgttcac ggtcgtacaa acgctatctt gcttccgtac
     2461 gttatccgct acaacggtac tcgtccagct aagacagcta catggcctaa gtacaactac
     2521 tataaagcag atgaaaaata ccaagacatc gctcgtcttc taggtttgcc atgttcaaca
     2581 ccagaagaag ctgttgcagc atacgcacaa gcagtttatg acctcggtga acgcatcggt
     2641 atccaaatga acttgaaagc acaaggtatc gacgagaaag aactcaaaga acactctcgc
     2701 gaattggctc ttcttgccta cgaagatcaa tgtaccccag ctaacccacg tctagcaatg
     2761 gttgaccaca tgcaagaaat catcgaagat gcctactacg gttacaaaga acgtccaggt
     2821 cgcatcaagt aaggattttc gtcacgatac atcgttaaag ctccttgcct aactttagtt
     2881 atgtctacgt cgctttgcct tgtctcgttt agaaaatcat tccttagtga tttagcttca
     2941 ccttcgtcaa tctgcctaga aagacttagg actagaaaaa agtctaggta ggagtagcaa
     3001 atcgtatcct actcagttga acggagtatg atttataggt aaattgcctc caaatatcgt
     3061 aagacaatcc tctattgaaa aataggggat tgtttgttta gaaataatgg tggagatcct
     3121 gtaaaaagcg aaagtggttg gaaagttagg gtttagccga gaaaaagaga cttttctatc
     3181 tatctttcac aattttctgt caatttgtgg tagaatagaa aaaatagatt ttttatgagg
     3241 gataccatga cattagtata tcaatcaaca cgcgatgcta aaaatactgt atcggctagt
     3301 caggcgatat tgcagggctt ggcgaccgac ggtggtttgt ttacaccgat ttctattcca
     3361 gcagttgact tggacttttc tgttctcaaa gacgcttctt atcaagaagt tgccaagttg
     3421 attttgtcgg ctttcttgga cgattttacg gcagatgagt tggactactg tatcaacaat
     3481 gcctacgata gcaagtttga cacaccagct attgccccag tggttaagct aaaaggtcag
     3541 tacaatttgg aactcttccg aggttcaacc attgccttta aggatatggc tctgtccatc
     3601 ctcccttact tgatgacgac tgcggcgaaa aagcatggtt tggaaaatga gattgtcatt
     3661 ttgaccgcga cttcaggcga tacaggtaag gcagctatgg ctggttttgc agacgttcct
     3721 ggcacgcaaa tcattgtctt ctacccacgt gacggggtat ctaaggtcca agaattgcag
     3781 atgactacgc agacaggggc taatacgcac gtggtggcca ttgacggtaa ctttgacgac
     3841 gcccagacaa atgtcaaacg tatgttcaac gatgaggctc tccgtgccaa gttggcagcg
     3901 aagaaacttc agttttcatc tgccaattct atgaacatcg gccgcttggt gccacagatt
     3961 gtttactatg tctatgccta cgctcagctg gttaagactg gcgagattgc ggcgggcgac
     4021 aaggtcaact tcaccgttcc aacaggaaac tttggaaaca tcttggcggc ttattacgcc
     4081 aaacaaatcg gtctgccagt tggcaagctc atctgtgctt ccaacgacaa caatgtccta
     4141 accgacttct tctcgactgg cgtttacgac aagaaccgta ccttccgcgt gaccaccagt
     4201 ccgtccatgg acatcttggt gtcttctaac ttggagcgct tgattttcca tctctttgac
     4261 aatgacgctg caaaaacagc ggagctgatg gaagccttga acacagctgg tcagtatgat
     4321 attcaagggg ctgacgcgga tatcctctct ctctttgctg ccgcctttgc gacggaagaa
     4381 gaaacggctg cggaaatcaa gcgagtctat gacgagtcag actacattga agacccacat
     4441 acggctgttg cctcagctgt ctataaacag tatgtggagc aaacagggga ccaaactccg
     4501 actgtgattg cttctacagc aagtccttac aagttcccag tagttgcggt tgaggctgtg
     4561 acaggccagt caggtttgtc tgactttgaa gcccttgcaa aattgcatga gatttcaggt
     4621 gtagctttgc caccagctgt ggacggcttg gaaacggcac ctgtccgcca caatactgtt
     4681 gttgcggcag ccgatatgca ggctgaagta gagcgttatt tgggtgttta atttcgattt
     4741 attttatgac aaactgctca ttttgaacag tttgttttct ttttgctgtt taaattaaaa
     4801 tttacagata attcaaagaa tgatatacta tataggaata cttgtagatg aggtggcgta
     4861 tggcacaaga acaggagaaa atctccagag aa
//
LOCUS       DASGCC010000131         4882 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.132, whole genome shotgun sequence.
ACCESSION   DASGCC010000131 DASGCC010000000
VERSION     DASGCC010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4882
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.132"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            30..1358
                     /locus_tag="U1404_001707"
     CDS             30..1358
                     /locus_tag="U1404_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5348627.1"
                     /translation="MNRLMHFLEHKLAPFGTKVGNQRHLKAVRDGFMMAMPLVLVGSF
                     FLLLISWPDQASGGFSVVGFLEQIGLLGILNRLNQSTMAIISLIATFGIAYRLSESYE
                     TDGPSAGVIALSSFILLAPRFSTIVFNESGEQINQVFAGAIPFGSLNASALFVAIAIG
                     LVSAEIYRFFIQRGITIKMPKNVPDVVGKSFAALLPALTTLIFWACVFQGLEAAGVEG
                     GLGAVLGLIVGKPLGLIAGSLGGMVLVVLVNSLFWFTGVNGGQVLNAFVDPVWLQFTE
                     ANQVAAAAGEKLPHIITLPFKDLFVFMGGGGATVGLAICLLVFSKSRTFKSLGRISFI
                     PSLFNINTAILFSFPTVLNPIMMIPFILTPTVNAIITYFAMATGLVPMTTGVVLPWTM
                     PPILGGFLATGGSVQGAILQIILIGVSFIIYYPFFKVADNKNLELEASGE"
     gene            1363..3249
                     /locus_tag="U1404_001708"
     CDS             1363..3249
                     /locus_tag="U1404_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000236922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4838 domain-containing protein"
                     /protein_id="HEM5348628.1"
                     /translation="MKLTIFDKVQNKTSQFAIDELTYYLKAIFDFELGRTTVEEDANI
                     LLSKEYFDNNDTIGIEMKNGNAILSGNSDISILIAVYRLLSEFGAVFTRPGRKHELIP
                     SLSISDWNEKELSIHETASYKHRGVCIEGADSYQNIKEFLDWLPKINMNSFFIQFENP
                     YSFLKRWYEHEFNPYADKEDFNTEIAQQMSDLLDEELSKRGLIHHRVGHGWTGEVLGY
                     SSKYGWESGLILPEEKKPLVAELNGKRELFNTAPILTSLCFSNPDVGERMCELIVNYA
                     KERKDVDYLHVWLSDARNNICECEKCKEEIPSDQYVRILNQLDRKLGEEGLNTKICFL
                     LYHELLFAPKHEVLENPERFTMMFAPITRTFEMSYADVDYENNVPLPNEYTRNNIVLP
                     NSLEENLSYLFSWQKVFNGDSFVYDYPLGRAHYGDLGYMKISKVIFRDVVYLKKLGLN
                     GYISCQELRAGFPHNFPNFVMGQMLWNRNLEYDELKALYFSSLYGSEWKSVVTYLEKL
                     SDYSSCDYFNSIGDRQNAELSMKYNISSKLAFNFINILEENVAKNYGIKRDAWRQLGY
                     HREYVIKLANALYLMASGDYLDGQIQWRDFLDYIRNHESDFQPYLDVYRIIEVAKNYA
                     GFKL"
     gene            3369..>4882
                     /locus_tag="U1404_001709"
     CDS             3369..>4882
                     /locus_tag="U1404_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM5348629.1"
                     /translation="MNKKIFLNSAIILLSVTCFTGSVDALDNSRVIAIPSEIVNSENA
                     YNITLKAKTDGVESDLGGSIVSENGVLSGSNGTKINLKITTNPGYRFVGYQSFLENGN
                     STDGLLPIENDSFEISDKTGNVTVIAIFESVPVDESIYFSDDFSVENINNYVISENLV
                     GKIGISDGKMNLHAPGISSIKPILTKPIEDNATSGYEIGFTLQQIGEVKPWNTFRIVF
                     KEDHDGFIYALEFSGQAAFLKKLSSIDAPLQSGEKYAETSHILGSEEHKVRLVVKGNS
                     VTVSDNGIPLLSYNSPNNWNDAQASIVFSPVSNRSVSLDDIIVRRTQTLRPFRVVSRL
                     DGQEVSGVLPGSIKGTTSQVFVGDSLNLEVIEKSGYQFIGFKDSAGNFLDLTTFVVPN
                     EESELVLYADFESVDVVIREPKTFYIDSLGGNDSNNGETENSAWKSFEQLRKKSFVAG
                     DRILIKRGSRFVGESAFLTFKGSGSQNTPILISSYGEGELPLLEGQGKIENVIK"
BASE COUNT         1567 a          699 c          984 g         1632 t
ORIGIN      
        1 acaaaataaa attaatggag gataagaaaa tgaatagatt aatgcatttt cttgaacata
       61 aacttgctcc ttttggaact aaggtaggaa atcaacgtca tttgaaagca gttcgtgacg
      121 gttttatgat ggctatgcct cttgtattag ttggctcgtt cttcctgttg ctaatcagtt
      181 ggccggatca ggcttctggg ggattttcag tagtaggctt tttagagcaa attggtttgt
      241 tgggaatttt aaatcggtta aatcaatcaa caatggcgat catctctctc atagctacat
      301 tcggtattgc atatcgatta tccgaatcat atgagacaga tggaccttct gcaggtgtta
      361 ttgccttatc ttcttttatt ttacttgcac caagattctc aacaatagtt ttcaacgaat
      421 ctggtgaaca aattaatcaa gtatttgctg gagcaatacc atttggaagt ttgaacgcaa
      481 gtgcattatt tgttgctatt gctattggat tagtttcagc tgaaatttat cgcttcttta
      541 ttcaaagagg tattacaatt aaaatgccaa aaaatgtccc tgacgttgtg ggtaagtcgt
      601 ttgctgcatt gcttccagca ttaacaacat tgattttctg ggcgtgcgtc ttccagggat
      661 tagaagctgc cggtgttgaa ggtggacttg gagcggtttt aggattaatt gtaggtaaac
      721 cactaggact tattgcagga agtctaggtg gaatggtgct tgttgtgctt gtaaattcac
      781 ttttctggtt tactggcgtt aatggtggac aagtgttaaa tgcttttgtt gatccggttt
      841 ggttacagtt cacagaagca aatcaagttg cagcagctgc gggagaaaaa ttaccacata
      901 ttattacttt gccattcaaa gatttgttcg tatttatggg cggtggtggc gctacagtag
      961 gattagcgat ttgcttactt gtctttagta aaagtcgtac atttaagagt ttaggacgaa
     1021 tctcctttat tccttctctc tttaatatta atactgctat tctgttcagt tttccaaccg
     1081 ttttgaatcc tattatgatg attcctttta ttctcacgcc aacagtaaat gcaataatta
     1141 cctatttcgc tatggcaact ggattagttc cgatgacaac aggggttgtt cttccttgga
     1201 caatgcctcc aattcttggt gggttccttg ctactggcgg tagtgttcaa ggagcaattt
     1261 tacaaattat tttaatagga gtctcattca ttatttatta tccatttttc aaagtggccg
     1321 ataataagaa tttagagctt gaagcatcag gagagtgatc atatgaaatt aacgattttt
     1381 gataaagtac agaataaaac ttctcaattt gctatagatg aacttacata ttacttgaaa
     1441 gccatttttg attttgagtt aggaaggaca actgttgagg aagatgcaaa tattctactc
     1501 tcaaaagaat attttgacaa taatgatacg attgggattg agatgaagaa tggaaatgcg
     1561 atattatcag gtaattctga tatctctatt cttattgcgg tatatcgctt acttagtgaa
     1621 tttggagctg tattcactag accaggtaga aaacatgaac taattccctc gttatcgata
     1681 tctgactgga atgagaaaga gctctctatt cacgagactg ccagttataa acatcgagga
     1741 gtatgtatag aaggtgcaga tagttaccag aatataaaag aatttttgga ttggttacca
     1801 aaaattaata tgaatagctt ttttattcag tttgagaatc cgtattcatt tttaaagcgc
     1861 tggtatgaac atgaatttaa tccgtatgcg gataaagaag atttcaatac ggaaattgca
     1921 caacaaatga gcgacctttt agatgaagaa ttatcaaaac gaggtttaat acatcatcgt
     1981 gttggacatg gttggactgg tgaagtactt ggatattcat ctaagtacgg atgggaatct
     2041 gggttaatac tacctgaaga aaagaaaccc ctagtcgctg aattaaatgg aaaacgtgag
     2101 ttatttaata cagcgccaat actaactagt ctatgtttct caaatccaga tgttggtgaa
     2161 agaatgtgtg aactaattgt aaactatgca aaggaaagga aagatgtaga ctacttacat
     2221 gtttggttat ccgatgcacg gaacaatatt tgtgaatgtg aaaaatgtaa agaagaaata
     2281 ccctcagatc agtatgtacg aattttgaat caattagatc ggaaattagg tgaagagggg
     2341 cttaatacaa agatttgttt tttactttat catgaattgc tttttgcacc aaagcatgaa
     2401 gttttagaga atcctgaacg tttcacaatg atgtttgcgc ctattaccag aactttcgaa
     2461 atgagttatg ctgatgtaga ctatgaaaac aatgtcccac ttccaaatga gtatacaaga
     2521 aataatattg ttcttcctaa ctcacttgaa gaaaatctct catatttatt tagttggcaa
     2581 aaagtgttta atggagatag ttttgtctat gattacccac ttggtcgggc acattatggt
     2641 gatttaggat atatgaagat cagtaaagta atctttagag atgtcgtata tcttaaaaaa
     2701 ttgggtttaa atggttatat tagttgccaa gagttacgcg caggtttccc tcataacttc
     2761 cctaactttg tgatgggtca aatgttgtgg aacagaaatt tagagtacga tgaattgaaa
     2821 gcgctctatt tcagttcctt atatggttct gaatggaaaa gtgttgtaac gtacttagaa
     2881 aaattatcag attactcttc atgtgattat tttaattcaa taggtgatcg ccaaaatgct
     2941 gaattatcaa tgaaatacaa tatctcaagt aaattagcat ttaattttat aaatatcttg
     3001 gaagagaatg tggctaaaaa ttacggaatt aaacgtgatg cttggcgaca attaggttat
     3061 caccgagaat atgttatcaa attggccaac gccctttatc taatggcctc tggagactat
     3121 ctcgatggcc aaatccaatg gagagacttt ttagattata ttagaaatca tgaatcagat
     3181 tttcaaccat atcttgatgt ttaccgtatc attgaagttg ctaaaaatta tgctggattc
     3241 aaattgtagt cctatggatt agattagaaa aatagccaat tcactattta tttttaagtg
     3301 aattggcttg atgtctatta ttagaaggat aaataaaaat atttgatgtt attttttgag
     3361 agggttacat gaataaaaaa atttttttaa actcagcgat tatattactc tctgttactt
     3421 gttttactgg ttctgttgat gctttagata atagtagagt gatagcgata ccaagcgaaa
     3481 tcgtaaacag cgaaaacgca tacaacatta ctttaaaagc gaaaactgat ggagttgaaa
     3541 gtgatcttgg aggaagtatt gtttctgaaa atggtgtctt atcaggttct aatggtacta
     3601 aaataaattt gaagataacc acaaatcctg gttatcgatt tgtaggttat caatcatttt
     3661 tagaaaatgg aaatagtacg gatggattgc tacctatcga aaatgatagt tttgaaattt
     3721 cagataaaac aggcaatgtg accgtaatag caatatttga gtcagttcca gttgatgaat
     3781 caatatattt tagtgatgat ttttcagttg aaaatattaa taattatgtg atatctgaaa
     3841 acctggtagg aaaaattgga attagtgatg ggaaaatgaa tcttcacgct ccaggtatct
     3901 cttcgatcaa accaatttta acaaaaccaa tcgaagataa tgcaacttct ggatatgaaa
     3961 ttgggtttac attacaacaa attggtgaag taaagccatg gaatactttt agaatagtat
     4021 ttaaagaaga tcatgatggg ttcatttatg ctttagaatt ttcaggacaa gctgcttttt
     4081 taaaaaaact ttctagtata gatgcaccac ttcaatctgg cgaaaaatat gctgaaacaa
     4141 gtcatatttt aggaagtgaa gagcataaag tacgacttgt agtcaaaggt aattcagtaa
     4201 cagttagtga taatggaata ccattattaa gttacaacag cccaaacaat tggaatgatg
     4261 cccaagcatc tattgttttt tcaccagttt caaatcggag tgtttctcta gatgatatta
     4321 ttgttcgaag aactcaaacc ttaagacctt tccgggtcgt ttctcgatta gatggtcagg
     4381 aggtatctgg agttctgcct ggttcaatta aaggaaccac aagtcaagtt tttgttggag
     4441 attcacttaa tttagaggtc attgaaaaat ctgggtacca atttattggt tttaaagata
     4501 gtgctggtaa ttttcttgat ttaactactt tcgttgttcc aaatgaggag tcagagttag
     4561 tgctgtatgc cgattttgag tcagtggatg tagtgattcg tgaaccaaag actttctaca
     4621 ttgatagtct aggaggaaat gattctaata acggggaaac cgaaaatagt gcatggaaat
     4681 catttgaaca attaaggaaa aagtcgtttg tagctggaga tagaatatta ataaaacgtg
     4741 gaagtcggtt tgttggagaa agtgcttttc ttacatttaa aggttcgggt agtcaaaata
     4801 ctccaattct aatttcatcc tatggtgaag gtgagttacc tttattagaa gggcaaggga
     4861 aaattgaaaa tgtaattaag tt
//
LOCUS       DASGCC010000132         4866 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.133, whole genome shotgun sequence.
ACCESSION   DASGCC010000132 DASGCC010000000
VERSION     DASGCC010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.133"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..841)
                     /locus_tag="U1404_001710"
     CDS             complement(<1..841)
                     /locus_tag="U1404_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007520187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine hydroxymethyltransferase"
                     /protein_id="HEM5348630.1"
                     /translation="MYKINKFEGEIYQKLNKILDSYNQEQNSLINLAACISYPFTEVL
                     KIQSFPLATLPTEGAVEKRFFPHCTSLDNIEVYSEELCLQLFDLNPGDYRVNVQPHSG
                     TQANQIVYNCVLERDDYILSLSPKDGGHISHTYTGKGTVKYYHLDHNLNIDYIELKEL
                     LDKYKPKLIIIGASSYGNEFNYQQIYEIIKEVSPNTLILADICHSVLYIMAKLHKSIF
                     PYVDFATFTMDKCLRGPQGGVLLYRSIFEEKITNSIFPRTQGGPTQTALFAKCICLIK
                     LLSI"
     gene            937..1833
                     /locus_tag="U1404_001711"
     CDS             937..1833
                     /locus_tag="U1404_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM5348631.1"
                     /translation="MNYDTIQRYLDFCAIQRRLSSHTIRAYKSDLHQYYNFGTNDIRS
                     YLTFLNQHIKKTSTLKRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTIS
                     LKDLQKIYCFAHQQIENSKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLE
                     NRTIQILGKGKKERLLYIGNDETLSLLEDYIAHHCSHSSYLFTGVKNDDYLKEQSVRL
                     ILKNISHSLQLKKHITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQ
                     SKQVEILSEHNPLNQITPLLRT"
     gene            complement(1865..2050)
                     /locus_tag="U1404_001712"
     CDS             complement(1865..2050)
                     /locus_tag="U1404_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348632.1"
                     /translation="MSQLVVSLTIPKSHRFEKKSRNDILMKIRIGKSEVTFFQSINPE
                     VMETILDKVLYYDYPTQ"
     gene            2129..2266
                     /locus_tag="U1404_001713"
                     /pseudo
     CDS             2129..2266
                     /locus_tag="U1404_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            2339..2539
                     /locus_tag="U1404_001714"
     CDS             2339..2539
                     /locus_tag="U1404_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348633.1"
                     /translation="MVLAIIKQQTSTIEQLTNELTLLREQVEYLRQKLYGKSSEKVVH
                     QPGQLSLFGEESLPEEDADLPS"
     gene            2493..3845
                     /locus_tag="U1404_001715"
     CDS             2493..3845
                     /locus_tag="U1404_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HEM5348634.1"
                     /translation="MGRKACLKKTLTYPVETETITYKRKKAKGIRQAIFSQFTPEIVH
                     HEVQGEDCTCPDCHGQLKEIGSAVQRQELVFIPAQLKRIDHVQHAYKCQACSQKNLSD
                     KIIKAPVPKAPLAHSLGSASIIAHTIHQKFNLKVPNYRQEEDWHKLGLPISRKEIANW
                     HIKSSQYYFEPIYDLLHEKLLEQPILHADETSYKVLENDSQLTYYWTFLSGKHERKGI
                     TLYHHDKRRSGLVVKEFLGDYSGYVHCDMWSAYRQLDKAQLVGCWAHVRRKFFEATPK
                     KADKTSLGAKGLAYCDRLFVLESDWADLSSEERLHKRQTELAPLMDEFFDWCREQSVL
                     PGSKLGTALEYSLKYETTIQTVLSDGDLVLSNNMAERAMKTLVMGRKNWLFSQSFEGA
                     KSTTIILSLLKTAKRHELDTEKYMTYLLDNLPNEETLAKKVVLEAYLPWAERIQNKCK
                     "
     gene            4092..>4866
                     /locus_tag="U1404_001716"
     CDS             4092..>4866
                     /locus_tag="U1404_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000222578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5348635.1"
                     /translation="MGIKDKNIKILFILKHQTHLEIRAKLDYDSPRCPHCQGKCIKYD
                     FQKSSKIPILDCQGFPTLLLLKKRRFQCKSCQKVTVTETALVKKNCQISQPIWEKVTQ
                     LHTKNMTNIAIARRLHISVSVVQRKLAQFQLEHDFTKLPKVLSWDEFSRNKGKLACIA
                     QNFETRSIVTILDNNRQTTIKNYFYKYPRAVRETVEVVTVDMSGSYIPIIKKLFPRAK
                     IVLDRFHIIQHMSRAMMTTRIDIMKTFDTRSLPYRSMKNH"
BASE COUNT         1582 a          959 c          919 g         1406 t
ORIGIN      
        1 ctattgataa taatttgatt aaacagatac atttcgcaaa taatgcagtt tgtgtaggcc
       61 caccctgtgt tctaggaaaa attgaattag ttattttttc ttcaaatata gaacgataca
      121 gtagtactcc tccttgaggc ccacgtaaac atttatccat tgtaaaagta gcgaaatcca
      181 catatggaaa aatcgactta tgtagctttg ccataatata taaaacactg tggcaaatat
      241 ccgctaagat gagggtattt gggctaacct cttttataat ttcataaatt tgttgataat
      301 taaattcatt tccatacgac gaagcaccaa taataatcaa tttaggttta tatttatcta
      361 ataattcctt taattcgata taatcaatat ttaagttatg gtctaagtga taatatttta
      421 cagtaccttt acctgtataa gtatgcgaaa tatgtcctcc gtcttttgga gataacgata
      481 aaatataatc gtctctttct aaaacacaat tgtagactat ttggttagct tgagttcctg
      541 aatgtggttg cacattaact ctataatcac caggatttaa atcaaaaagt tgaagacaca
      601 attcttctga atatacttca atattatcca atgaagtaca atgaggaaaa aagcgttttt
      661 caacagctcc ctctgttggc agagtagcga gagggaaact ttgaatcttt aatacttcgg
      721 tgaatggata gctaatacat gcagcaaggt ttatcaggct attctgttct tggttatatg
      781 aatcaagaat tttatttaac ttctgataga tttcaccttc aaatttatta attttataca
      841 ctgatttctc ctaccgataa caatttatta tcattagtaa attgataaat tatcgtatat
      901 aatagcttta ttacgatata ttaaggagat tatattatga attacgacac tatccagaga
      961 tatcttgact tttgtgctat tcaaagacga cttagttctc atactatccg agcatacaaa
     1021 tctgatttac atcagtatta taactttggg accaatgata ttaggtccta tcttactttt
     1081 ctcaaccaac atataaaaaa gactagcaca ttaaaacgga agattgctag tcttaaatca
     1141 tactataaat ttctggaaga agaaaaacta atttcaaaaa atcccttcca tcagcttcga
     1201 ctccactaca aggaagagaa aaagcttcct aaaacgattt ccttgaaaga tttacaaaaa
     1261 atatattgtt tcgctcacca acaaatagaa aattctaaaa ataagcattc tatgcggaaa
     1321 gctatgcgaa acctactcct tatctcgcta cttttatcaa ctggtctacg catctctgaa
     1381 ttatgtaatt taaaacttga taatatcaat ttggaaaata gaaccattca aatactcgga
     1441 aaaggaaaga aagagcgact actctatatt ggaaacgatg aaacactttc gttacttgaa
     1501 gactatatag cgcatcattg tagtcattct agttatctat ttaccggtgt gaaaaacgat
     1561 gattatctta aagaacaaag tgtgcgctta attctgaaaa atatttctca ctcgctacaa
     1621 ctgaaaaaac atatcactcc acatatgttt cgacatagtt ttgcaactat gttgcttgat
     1681 aatggcgtcg atattcgaca aatacaacat ttactgggcc acagtaacat caatgtaaca
     1741 caaatctata ctcatgtctc tcaaagcaag caggtagaaa ttctaagtga gcataatcct
     1801 cttaaccaaa tcacaccact acttcgtaca taagtaaccg caaaccaagt agacttgacc
     1861 taaatcactg agtcggatag tcataataca gcaccttatc caagattgtt tccattactt
     1921 cagggttgat agattggaag aatgtgactt ccgattttcc gatacgaatt ttcatcagaa
     1981 tatcgtttct gcttttcttt tcaaagcggt gagatttggg aatagtcaat gagacgacga
     2041 gctgtgacat aaaaaatcct ccagttttgt tttttataac agtatactgg aggagggagt
     2101 gattggatag ataccttgtt attgggcggt tatgattgac ctaagacact atgaatctgg
     2161 taacttcctc gctaaggaac acattgccaa gcgtggcaat ccctatgcta gaaaagtttt
     2221 gttcaagtgc ctttacaata tcgcttcagc tagccacact aatcctttac gattacgatt
     2281 caacccaaag tcagtaaagt tgtttactcc ctataattct aacaccttgt ttcaaaaaat
     2341 ggtattggca attattaaac aacagacctc aacgattgaa caacttacca acgagttgac
     2401 cctccttcgt gaacaggttg agtatctgag acagaaactc tacggaaaat catcagagaa
     2461 ggtagtgcat caacccggtc agctgagctt gtttggggag gaaagcctgc ctgaagaaga
     2521 cgctgactta cccagttgaa acggagacta tcacctataa acgcaagaaa gctaagggaa
     2581 ttcgtcaggc tatttttagt cagttcactc cagagattgt tcatcacgaa gtgcaggggg
     2641 aagactgcac ttgtccagac tgtcatggtc agttgaagga gattggctcg gctgttcaac
     2701 gacaagaatt ggtctttatt cctgcgcaac taaagcggat tgaccatgtc caacatgcct
     2761 acaagtgtca ggcatgtagt cagaagaatc taagcgataa gattatcaag gctcctgttc
     2821 ctaaggctcc tctggcacat agcttgggtt cagcttctat catcgcccac accattcacc
     2881 agaaattcaa tctgaaggta cccaattatc gtcaggaaga ggactggcat aagcttggtt
     2941 tgcccatcag tcggaaggaa atagccaact ggcacatcaa gtctagtcag tattatttcg
     3001 aaccgattta tgacctgttg cacgagaaat tgttagagca gcctattctc catgcggatg
     3061 agacctccta caaggtctta gaaaatgata gccagttgac ctactactgg actttcttgt
     3121 ctgggaagca tgagagaaag ggaatcaccc tctatcatca tgacaaacga cggagtggct
     3181 tggttgtaaa ggaatttctt ggggattact ctggctatgt acattgtgac atgtggagtg
     3241 cttatcggca gttagacaag gctcagctgg ttggctgttg ggctcatgtt agacgaaagt
     3301 tctttgaggc aactcctaag aaggcagaca agacttcttt aggagccaag ggcttagcct
     3361 attgcgaccg cctgtttgtc ttggagagtg actgggctga cttgtctagc gaggagcgac
     3421 tgcataaacg ccagacagag ttggctccct tgatggacga gttctttgac tggtgtcgtg
     3481 agcaatctgt tttgccaggc tccaaattgg gtactgcttt ggagtatagc ctcaaatacg
     3541 aaaccaccat ccaaaccgtt ctctcggatg gtgacttggt cctgtctaac aacatggctg
     3601 aaagggctat gaagaccttg gtgatgggca gaaaaaattg gttgttctcc caaagttttg
     3661 agggagccaa gtcgacaact atcattttga gtcttttgaa aacggccaag aggcacgaac
     3721 ttgatacaga gaaatatatg acctatcttc tagacaatct acctaacgag gaaacactcg
     3781 ctaaaaaggt ggttctagag gcttatttac catgggctga aagaattcag aataagtgca
     3841 aatagaaaaa aagttccgga gtcaagcaga ctgtggaacg tttttcggct ctataatttc
     3901 tgtagtgggt aaatccactg tagagattat ggagcctttt tgaatatata caaaaagtcc
     3961 catataacct ataatgaaaa gcaaccacac tcacattaga aagactcata tggaataaat
     4021 ccagagtcag ggaagtgact ctggattcct gagcctagaa ataaaaaagc gaagatcata
     4081 ccacagaact aattggaatc aaagacaaaa acatcaaaat tctcttcatt ttgaaacatc
     4141 agacccatct agaaatcagg gcaaagctag attacgacag ccctcgttgt cctcattgcc
     4201 aaggaaagtg tatcaagtac gactttcaaa agtcgtcaaa gattccgatt ttggattgcc
     4261 agggctttcc gaccctcctc ttgcttaaaa aacgccggtt tcaatgcaaa tcttgccaaa
     4321 aagtgactgt aactgagaca gctctagtca agaaaaactg tcagatttcc caacctattt
     4381 gggagaaagt gacacaactc catacaaaaa acatgaccaa tatagccatc gctaggagat
     4441 tacatatctc cgtatcggtc gtccagagga aactggctca gtttcaattg gagcatgatt
     4501 ttacgaaatt accaaaagtc ttgagctggg atgaatttag tcggaacaag ggaaaactcg
     4561 cctgtattgc tcagaatttt gagacgagat cgattgtgac cattcttgac aacaaccgcc
     4621 aaaccaccat caagaactat ttctacaagt atcctagggc ggtcagagaa actgtcgagg
     4681 tcgtaacagt ggacatgtcg ggtagctata ttcccatcat caaaaaacta tttccaagag
     4741 ctaaaattgt ccttgataga tttcacatta tccaacacat gagccgtgct atgatgacga
     4801 ctagaattga tattatgaag actttcgata cgcgttccct accttatcga tccatgaaaa
     4861 atcact
//
LOCUS       DASGCC010000133         4700 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.134, whole genome shotgun sequence.
ACCESSION   DASGCC010000133 DASGCC010000000
VERSION     DASGCC010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4700
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.134"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(31..726)
                     /locus_tag="U1404_001717"
     CDS             complement(31..726)
                     /locus_tag="U1404_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM5348636.1"
                     /translation="MISNEQYDYLRAHPTFERLTRDSFDQLAKHIRFRKIPKGQIFFY
                     AEDPRDYLFVLYKGYARIEQYDETDSFTYLDYIRQGGAFPFGDMFQDKPYHYTAIAIT
                     DLEYFIVPMVLFETLSKINPSQMVYICQKLSKVLRFQELRLRNAMRSKASDRVVQALA
                     LLYWDMCQRDQFATLPFEIHIQEISRLAATTRETVSHVLKQLKQDGKIAYSHKQLTYL
                     DIDYFLENLTETH"
     gene            complement(1333..2250)
                     /gene="whiA"
                     /locus_tag="U1404_001718"
     CDS             complement(1333..2250)
                     /gene="whiA"
                     /locus_tag="U1404_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEM5348637.1"
                     /translation="MSFTVQVKEELLLQSSQNKSELSAIIKLSGSLGLASSGLTLSIS
                     TENAKIARHIYELLLHFYQIKAEIRHHQKPNLKKNRVYAVLIEDGVNEILNDLHLADS
                     FFGLETGISPLVLENDSWSQAYLRGAFLAAGSVKDPEKGKYQLEIASVYSDHANDLAN
                     LMQKFLLDAKVIERSKGTITYLQRAEDIMDFLLVIGAEETKTEFENVKLLREARNDLN
                     RATNAEAANIAKTVNASMKTINNIIKIMDTIGLDQLSGDLQEIAQLRIQHPDYSIQQL
                     ADSLTVPITKSGVNHRLRKINKIADELTD"
     gene            complement(2247..3221)
                     /locus_tag="U1404_001719"
     CDS             complement(2247..3221)
                     /locus_tag="U1404_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HEM5348638.1"
                     /translation="MRKPKITVIGGGTGIPVILKSLRDKDVEITAIVTVADDGGSSGE
                     IRQALQVTPPGDLRNVLLAMSDMPKLYEQIFQYRFADSDGPLAGHPLGNLIIAGISEM
                     QGSTYNAMRLLTRFFHTTGRIYPSSEQALTLHAIFTDGTEVAGESKISKHNGMIDHVY
                     VTNSYNDDEPKASRQVVETIMESDMIVLGPGSLFTSILPNLMISDIGKALKETKAEVT
                     YVCNIMTQRGETEFFSDADHVAVLNAHLAEQFIDTVLVNIEPVPQEYMNSNQFDEYLV
                     QVKHDFAGLQKQANRVISSNFLRLENGGAFHDGDLVVEELLKILQVRP"
     gene            complement(3218..4105)
                     /gene="rapZ"
                     /locus_tag="U1404_001720"
     CDS             complement(3218..4105)
                     /gene="rapZ"
                     /locus_tag="U1404_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEM5348639.1"
                     /translation="MSDKLHLVIVTGMSGAGKTVAIQSFEDLGYFTIDNMPPTLLPKF
                     LELIRHSQDNNKIALVVDMRSRSFFSEIREVLDEIEGAEDLDFKVLFLDATDNELVAR
                     YKETRRSHPLAADGRVLDGIQLERELLAPLKNMSQNIIDTTELTPRNLRKAISEQFAS
                     QDNQPSFRIEVMSFGFKYGLPLDADLVFDVRFLPNPYYKLELRNLTGLDAPVFDYVME
                     HQESEEFYSHLLGLIEPILPGYQKEGKSILTIAVGCTGGQHRSVAFAKRLADDLEKNW
                     NVNRSHRDKDRRKETVNRS"
     gene            complement(4127..4504)
                     /locus_tag="U1404_001721"
     CDS             complement(4127..4504)
                     /locus_tag="U1404_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEM5348640.1"
                     /translation="MKTIHTDKAPAAIGPYVQGKVVGNFLFASGQVPLSPETGEVVGE
                     TIQEQTEQVLKNIAAILSEAGTDFDHVVKTTCFLKDMNDFVAFNEVYKTAFSADFPAR
                     SAVEVARLPRDVKVEIEVIAVID"
BASE COUNT         1420 a         1096 c          845 g         1339 t
ORIGIN      
        1 ttttattttt ttataaaaaa aacagaaact tcaatgagtt tctgtcaaat tttctaagaa
       61 ataatcaata tctaaataag ttaactgttt atggctataa gcaattttac catcctgctt
      121 cagttgcttc aaaacatggc taaccgtttc ccgtgtcgta gctgctaaac gcgaaatctc
      181 ttgaatatga atttcaaatg gcaaggtagc aaactgatcg cgctggcaca tatcccaata
      241 aagaagagcc aaggcttgaa cgactcgatc tgatgccttg gaacgcatcg catttcgcaa
      301 gcgcaactct tgaaaacgaa gcactttgga taatttttga cagatataaa ccatttgact
      361 cggatttatc ttcgacaagg tttcaaacaa gaccatcggt acaataaaat actctaggtc
      421 cgttatggca atggcggtat aatgataagg tttgtcctga aacatatctc caaaaggaaa
      481 ggcaccaccc tgccgaatat agtccaaata cgtaaaacta tccgtctcat catattgctc
      541 aatccgagca taacccttat acaatacaaa tagataatct ctaggatcct ctgcgtaaaa
      601 aaagatttgc cccttgggaa tctttcgaaa acgaatatgc ttagctaatt gatcaaagct
      661 atcacgtgtc aaacgttcaa aagttggatg tgcccttaga taatcatatt gttcgttgct
      721 tatcatcaaa actcctttct agctaaagta tccttctatc tattttaaca tatattaacg
      781 ttctatgcta atcattacta aaaaattcat aaaacaggga ggaggctggg caaaaagccc
      841 agcaccgctt ctcaaagtta gtgtcaacat ctcagcgcag tggttgatta ggtttaacag
      901 tccagtggac tgttaaaggt tggagatagg atttgcgaag caaatctcag caattcgtgt
      961 tttacactcc aaatctaacc cttacgactg atgcgaacag agttcgcttc atctccaacc
     1021 tccaacagtc actactctga ctgttggagc tatgcggggg tgggagtgaa acagtctggg
     1081 gatagactgt ttcagctcaa caactggaaa tatgaacttg ttgacgaact cttctatgaa
     1141 tggctgagtt ctttcagact cccatcacaa ctaatacaaa aaactggtcc tctcgaacca
     1201 gtctttgtat cgtcgaatga attaactttc agacaaggaa ctgaggtgca agcaatacta
     1261 gagtacggca agccgagagt aacgatgtat caaagttaat tcaaatgact ataacattct
     1321 atgtatacct atctagtcag tcaattcatc cgcaatctta ttgattttcc gcaaacgatg
     1381 gttgacacca cttttagtga tcggtaccgt tagactatcc gccaattgct gaatggaata
     1441 gtctggatgc tgaattcgca actgggcaat ctcctgcaag tcacctgaca actgatctag
     1501 accgatagta tccataattt tgataatatt attgattgtt ttcatactag cattgaccgt
     1561 ctttgcaata ttagcggctt ccgcatttgt agctcgattt aggtcattgc gagcttcacg
     1621 aagcaattta acattctcaa attctgtctt tgtctcttct gctccaatca ccaaaagaaa
     1681 atccataatg tcctctgcac gttgcagata ggtaatggtt cccttacttc gctcaatgac
     1741 tttggcatct aaaagaaatt tctgcatcag attggccagg tcattggcat ggtcactata
     1801 gacagaagct atttcaagct ggtattttcc cttttcagga tccttaacag agcctgccgc
     1861 taaaaatgct ccacgaagat aggcttgact ccacgaatca ttttccaaaa ccaagggaga
     1921 aatccccgtc tctaatccaa agaagctatc agccaaatgc aaatcgttca atatctcatt
     1981 cacgccgtct tctatcaaaa ctgcatacac acgattcttt ttgagattag gtttttgatg
     2041 atggcgaatc tcagccttaa tctggtagaa atggagtaac agttcataaa tgtgacgggc
     2101 aatctttgca ttttccgtgc tgatagaaag agtcaaacct gatgaagcta agcccaaact
     2161 acctgataat ttgataatgg cagatagctc gctcttattt tggctagact gaagcagcaa
     2221 ttcttccttt acttgtactg taaaactcat ggccgcacct gcaaaatctt gagcaactct
     2281 tctaccacca agtcaccatc atggaaagct ccgccatttt ccaaacgaag aaaattcgaa
     2341 gaaatcacac gattagcttg tttttgcaaa cctgcaaaat cgtgttttac ctgtaccaag
     2401 tattcatcaa actggttgct attcatatac tcttgtggaa ctggctcaat attgaccaaa
     2461 actgtatcaa tgaattgttc agctaggtga gcattgagaa ccgccacgtg gtccgcatct
     2521 gagaaaaact cagtctctcc ccgttgggtc ataatgttgc acacataggt cacttcagcc
     2581 ttggtttctt ttagggcttt gccaatgtca gaaatcatta gattcggcaa gattgaggta
     2641 aaaagagaac ccggtccaag tacaatcatg tcactttcca taatcgtttc aactacctgg
     2701 cgactggctt tcggttcatc atcattataa gaatttgtca catagacatg atcaatcatc
     2761 ccattatgct tggaaatctt gctctcacct gccacctcgg tcccgtctgt aaaaatagca
     2821 tgaagggtca aggcctgttc gctagatgga taaatccgcc ctgtcgtatg gaaaaagcgc
     2881 gtcaacaacc tcatcgcatt gtaggttgaa ccctgcattt ctgaaatacc agcaatgatg
     2941 agattcccta gcggatgacc agccaagggt ccatctgaat ccgcaaaacg atactggaaa
     3001 atttgttcat aaagtttggg catatccgac atagccaata ggacgttacg caaatcacct
     3061 ggaggggtca cctgcaaagc ctgacggatt tcccccgaag atcctccgtc atcagctacc
     3121 gtcacgatag cggtaatctc tacatcctta tcccgcaaac tcttcaaaat gactggaata
     3181 ccagtcccgc ccccgataac tgtaattttt ggttttctca tgagcggttg accgtctcct
     3241 tccgtctgtc cttatcacga tgactacgat tgacattcca atttttctct aaatcgtctg
     3301 ccaaacgttt agcaaaggct acgcttctat gttgaccgcc cgtgcaacca acagcaatcg
     3361 ttagaattga ttttccttcc ttctgataac caggaagaat cggttctatc aagccgagca
     3421 aatgactata aaactcttcc gattcttgat gctccatgac atagtcaaag acaggagcat
     3481 ctagaccggt cagattacgc aactccaact tgtagtaggg atttggtaag aaccgaacgt
     3541 caaaaaccaa gtctgcatcc agaggtagtc catatttgaa accaaaggac atcacttcta
     3601 tgcgaaacga cggctgatta tcttgactag caaactgctc cgagattgcc ttacggagat
     3661 tacgaggagt cagctctgtc gtgtcaataa tattttgact catatttttc aagggagcca
     3721 aaagttcacg ctctagctga atcccgtcca aaacacgacc atcagccgcc aaaggatggg
     3781 aacgacgagt ttctttatag cgagcaacca attcattatc cgtcgcatcc aagaatagga
     3841 ctttaaaatc taaatcctct gccccctcaa tctcatccaa cacctctcga atctccgaga
     3901 agaaggagcg actccgcata tctacaacaa gagcaatctt attgttatcc tggctgtggc
     3961 gaatcaattc taaaaatttt ggcaagagag tcggtggcat attatcaatg gtaaaatagc
     4021 ccaagtcctc aaaagactga atggctaccg tcttaccagc tcccgacatc cctgtcacaa
     4081 ttactaaatg gagtttgtcc gacatgacat tccctccttt tctcttctaa tcaataactg
     4141 caataacttc aatctcaacc ttaacatcac gtggcaaacg agcaacttcc accgctgaac
     4201 gagctggaaa atctgctgag aaagctgttt tataaacttc attaaaagct acaaaatcat
     4261 tcatatcttt taggaaacaa gtcgtcttca ccacatggtc gaagtctgtt cctgcttctg
     4321 ataaaattgc tgcgatattt ttcaagactt gctcagtctg ctcctgaatg gtttcaccaa
     4381 ccacttcacc agtttcaggt gacaaaggaa cttgaccaga ggcaaatagg aaatttccaa
     4441 caaccttccc ttgaacgtat gggccaattg ctgcaggtgc cttatctgtg tgaatggttt
     4501 tcatatctct atctcctttt aattttttat atctattata gcacaagttc tgtataaaac
     4561 agctcaccta ctactatcct acacctattt tcttttataa aaaaggaatt gagatagtat
     4621 caccaacatg aaataaggca atccataatc tacttctaaa actacctgct tataccccca
     4681 aaaaaaaagg cctattcagc
//
LOCUS       DASGCC010000134         4629 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.135, whole genome shotgun sequence.
ACCESSION   DASGCC010000134 DASGCC010000000
VERSION     DASGCC010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4629)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4629)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4629
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.135"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            112..1269
                     /locus_tag="U1404_001722"
     CDS             112..1269
                     /locus_tag="U1404_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEM5348641.1"
                     /translation="MLKTKKAKIALFGGLGVVAVALVGGALIFSNMLTSPSSSEDVAM
                     SMTYTVAKEGSIASSTLLTGTITAADEQYVYYDPSKGDLSEVLVAPGAKVEVGTPLIR
                     YDATELQSALDTAVRGRDKIGRQIADLRTNGQTVQTTGDAETDAAATAAAQRSVDMQL
                     ADLNDSYADAQAAVDKAYTALTEATVTSTVAGTVVEVNKAVSKNSTSSQTVVHIVNQG
                     SLQVTGSLTEYDLANIAVDQEVKLTSKVYPDKTWTGKITYISNYPSSNQAGAATTGTS
                     GSGAKYPFKAALTSELGELKQGFSVNIEVVNTSKNILIPVSAVVPEEDKNYVWTLVDG
                     KAKKVEVTLGNADALNQEVTAGIAAGDKVITIPTPNLEDGKEVEANEEPAY"
     gene            1250..1945
                     /locus_tag="U1404_001723"
     CDS             1250..1945
                     /locus_tag="U1404_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348642.1"
                     /translation="MKNQLIRLTSINKSYKNGDQELRVLKNIDLEVEEGEFLAIMGPS
                     GSGKSTLMNIIGLLDRFSSGNYWLEGEEVSQLSEKKLAQVRNDQIGFVFQQFFLLSKL
                     NALQNVELPLIYAGVPSSKRKELAKQYLEKVELAERMTHLPSELSGGQKQRVAIARAL
                     VNTPAIILADEPTGALDTKTGEQIMQLLTELNNEGKTIIMVTHEPEIAAYAKRKIVLR
                     DGVITEDSRREGV"
     gene            1946..3193
                     /locus_tag="U1404_001724"
     CDS             1946..3193
                     /locus_tag="U1404_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348643.1"
                     /translation="MENWKFALKSIMAHKMRSLLTMLGIIIGVAAVVIIVAMGTGVAK
                     SIEKSLAGDQNNVQVYFTAFSSSGTAFGPFGTASTEEPILEEEPDLTDSTLKGLLEID
                     GVSNYYSSISNIAEVRSGNKKAENVTITGVSQNFFAVKEYEILAGRQFTANDYSRFSR
                     MIMLDTALAEKLFGSIENSLNQTISVNSNAYLVIGVYKDPKAGTAIYGMNSGGNAVMT
                     NTQLAAETGMKENSQIFVHVEDVTRATEVGKAAADYLTKATGLKEARYEIYDMSAMLE
                     EFKSQMSGVTLFIGAVAGISLLVGGIGVMNIMLVSVTERTREIGLRKALGATRGNILI
                     QFLIEAMVLTTLGGAIGLAIAQTIVFLLNVSKALGERIAAEISIPVVLGSLAFSAVVG
                     IVFGVLPANKASKLDPIEALRYE"
     gene            3319..4383
                     /locus_tag="U1404_001725"
     CDS             3319..4383
                     /locus_tag="U1404_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM5348644.1"
                     /translation="MVELGISTFGETTPLEKTGETYSHDERIHQLVKEIELADAVGLD
                     VYGIGEHHREDFAVSAPEIVLAAGAVNTKHIKLTSAVSILSSMDPVRLYQQYTTIDAL
                     SNGRAEIMAGRGSFTESFPLFGYDLHDYEELFDEKLDMLLEIDKETNLKWDGHFTQSV
                     DNKPVYPRPVQEDFPIWVATGGNVESTIKIAKKGLPIVYAVIGAGAHRFKPLVDAYRK
                     VARNSGHDPKKTKVAAHSWGWIADDHDKAVEEYYHPTKVITDNIAKDRPHWSEMTKAQ
                     YLYSLTDEGATIVGDPKRVAEKIIKTIETLDLDRFFLHLPIGSMPHEDVLRAIELYGK
                     EVAPIVRDYFAKKEENQSQD"
BASE COUNT         1394 a          863 c         1080 g         1292 t
ORIGIN      
        1 attgccgaac tttttataaa atagttagga aaaaacttgc atttgttctt gtatttgtgt
       61 attatataga caacacaaat aggtatgttt tgtaaagaaa aggagtttgt tatgttaaag
      121 acgaagaaag caaaaattgc tttgtttggt ggtcttgggg tagtcgcagt tgccttagta
      181 ggtggggctt tgatttttag caatatgcta acatcaccat catcttcaga agatgtagcc
      241 atgagtatga cctatactgt tgctaaagaa ggatcaattg cttcctcaac gctacttaca
      301 ggaacgatta cagcagcaga cgagcagtat gtttactatg atccttctaa gggagatttg
      361 agtgaggttt tggttgctcc aggtgctaag gtcgaagtag gtaccccttt gattcgctat
      421 gatgctacag aattacagtc tgctttggat actgctgttc gtggtcgtga taagattggt
      481 cgccaaattg cagacttaag aaccaacggt cagactgttc aaacaactgg tgatgcagaa
      541 acagatgctg cagcaactgc tgctgcacaa cgttcagtag atatgcagtt ggcagacttg
      601 aatgattcat acgcagatgc tcaagctgcg gttgataaag catatacagc cttaacagaa
      661 gcgacagtaa ctagtaccgt tgctggtaca gttgttgagg tgaataaggc tgtttctaag
      721 aattctacat cgagccaaac agttgtacac attgtaaatc aaggtagttt gcaagtaaca
      781 ggtagtttga cagaatacga tttggctaac attgcagtgg atcaagaggt caagctgact
      841 agcaaggtat atcccgataa gacttggaca gggaaaatta cctatatttc aaactatcca
      901 tctagtaatc aagctggtgc tgctacaaca ggaaccagtg gttcaggtgc caaatatcca
      961 tttaaggcag ctttaactag tgaattaggt gagttgaaac aaggattttc tgtaaatatt
     1021 gaggttgtca atacaagtaa aaacatttta attccggtgt ccgcagttgt gccagaagaa
     1081 gataaaaact atgtgtggac cttggttgat gggaaagcta agaaagtaga agttactctg
     1141 gggaacgcag atgctttgaa ccaggaagtg accgctggta tagcagcagg agataaggtt
     1201 attaccattc caactccgaa tctcgaagat ggcaaagagg ttgaagccaa tgaagaacca
     1261 gcttattaga ctaacaagta tcaataaatc ctacaaaaat ggtgatcaag aactccgagt
     1321 tttaaagaat attgatttag aggtggaaga gggagaattt cttgccatta tggggccctc
     1381 tggttcaggg aaatcaacct tgatgaacat tattgggctt ttggatcgtt tcagttcagg
     1441 aaactattgg ctggaaggtg aagaagtcag tcaactttct gagaaaaaat tagctcaggt
     1501 tcggaatgac caaatcggtt tcgtctttca acaatttttc ctcttatcga aacttaacgc
     1561 ccttcaaaat gtagaattac ccttgattta tgctggagtt ccatcaagca aacgtaagga
     1621 actagcaaaa cagtatcttg aaaaagttga gttggcagag cggatgacgc atttaccatc
     1681 agaattgtct ggtggtcaaa aacaacgggt agctattgct cgtgcactag tcaatacccc
     1741 agctattatt ttagcggatg aacctacagg ggctctagat accaagacag gtgagcagat
     1801 tatgcaactt ctgacggagt tgaataatga aggaaagacc attatcatgg ttacgcatga
     1861 gcctgagatt gctgcctacg caaaacgaaa aatcgttcta cgtgatggag tgatcactga
     1921 agatagtcga agggagggag tttagatgga aaattggaaa ttcgccctca aatctattat
     1981 ggctcataaa atgagatcgc tccttactat gttaggtatc atcattggtg tggctgcagt
     2041 tgtcattatt gtcgccatgg gaacaggggt ggccaaaagc atagaaaagt ctctagctgg
     2101 tgatcaaaat aatgttcagg tttactttac tgctttctcc agttcaggta cagctttcgg
     2161 tccgtttggc acagcgtcga cagaagaacc aattttagag gaagagccgg atttgacgga
     2221 ttctacttta aaaggactgc tagagattga tggcgtatca aactattact ccagcatcag
     2281 caacatagct gaagtcagat cgggcaataa aaaagcagag aatgtcacta ttactggtgt
     2341 tagccagaat ttctttgctg tgaaagagta tgagatttta gctggtcgtc agtttacagc
     2401 taacgactat agtcgttttt cacgtatgat tatgttagat acggcattag cagagaagtt
     2461 atttggttct atagagaact ctctcaatca gacgattagt gttaatagca atgcctatct
     2521 agtaataggg gtctacaaag atccgaaagc aggcacagct atttatggaa tgaattcagg
     2581 tggaaatgcc gtcatgacta atacgcagct agctgctgaa acaggcatga aagaaaattc
     2641 tcaaatcttt gtccatgttg aagatgttac tcgggcaaca gaagttggga aggctgctgc
     2701 agattacctg actaaagcga ctggattgaa agaagcgaga tacgagattt atgatatgtc
     2761 agctatgttg gaggagttta aatctcaaat gtctggcgtt acattgttta tcggtgctgt
     2821 tgcaggtatc tccttgctag ttggtggtat cggtgtcatg aatatcatgc tggtatcagt
     2881 aactgagcgg actcgtgaaa tcggtcttcg aaaagcgctt ggagcaacta gaggaaatat
     2941 cttgattcaa ttcttgatag aagccatggt cttgaccact cttggtggag caattggtct
     3001 cgcaatcgct cagacaatag ttttcttgct caatgtgagc aaggcgttgg gcgaaagaat
     3061 agctgctgaa atttcaattc ctgttgtgtt aggtagtctg gctttctcag cagtagttgg
     3121 tattgtattt ggcgtactac ctgccaacaa agcatctaag cttgatccaa ttgaagcttt
     3181 gcgctatgaa taatctgttg aaacgattag gttttcctag tcgttttatt ttttgagcaa
     3241 atcaattgat tttatcgcta attagagata aaataaacgc atcaattaag aaatagtgat
     3301 ttcaaaggag aacacatcat ggtagaatta ggtatttcaa catttggcga aacaactcca
     3361 ctagaaaaaa caggggaaac ttacagccac gacgagcgga ttcaccagct agtcaaagaa
     3421 atcgaactag ctgatgcggt ggggcttgat gtttatggga ttggggagca tcaccgcgaa
     3481 gattttgcgg tttctgcacc tgagattgtg ctggcagctg gtgccgtcaa taccaagcat
     3541 atcaaactaa catcagcagt ttcaatcctt tcctccatgg accctgtaag gctctatcag
     3601 cagtacacca ccattgatgc tttgtcaaat ggcagagcgg aaatcatggc gggtcgtggt
     3661 tcctttacgg agtcattccc cttgtttggc tatgatctcc acgactatga agaactcttc
     3721 gatgaaaagc tagatatgct tctggaaatc gacaaggaaa ccaatctcaa gtgggatggg
     3781 cattttaccc agtcagtcga taataagcca gtctatccac gtcctgttca ggaagatttt
     3841 ccgatctggg ttgcaactgg gggcaatgta gagtccacca tcaagattgc taagaaaggc
     3901 ctgccaatcg tgtatgcagt cattggtgca ggtgcccatc gctttaaacc tttagtcgat
     3961 gcttatcgca aggttgctcg caactcaggt catgatccaa agaaaacgaa agttgcagcc
     4021 cattcttggg gttggattgc agacgaccat gacaaggctg tggaagaata ctatcatcca
     4081 actaaagtaa ttacggacaa tattgccaaa gaccgcccac attggagcga gatgaccaag
     4141 gcgcaatatc tctactctct gacagacgaa ggagcaacca tcgtcggaga tccaaaacga
     4201 gtcgctgaaa aaattatcaa gactattgaa acacttgact tggaccgttt cttcctccat
     4261 ctcccaatcg gctcaatgcc acatgaagat gtcctccgtg ctatcgaact ctacggaaaa
     4321 gaagttgcgc caattgtccg agattatttt gcaaaaaaag aagagaatca gtcccaagac
     4381 tgatgagata aaaaggaggg gacgttataa tagcctcact tctctaaagt ggagtcaaca
     4441 tctcagcgca gtggttgatt ggaagatttg ttcgtgtttt acactccaca tcttcctaat
     4501 caactgtgcg ggggtgggaa gacgaactct ctatgattat ttgagttctg tcccactccc
     4561 aatcctaaat atttttcata atctcctgaa aatcctgacc atatggttgg gattttttga
     4621 atgattaga
//
LOCUS       DASGCC010000135         4316 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.136, whole genome shotgun sequence.
ACCESSION   DASGCC010000135 DASGCC010000000
VERSION     DASGCC010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.136"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            446..1276
                     /locus_tag="U1404_001726"
     CDS             446..1276
                     /locus_tag="U1404_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HEM5348645.1"
                     /translation="MVKINANGKEITLLSTNTDYVSLTDIAKYRNPDAPADIIKNWMR
                     SRNTIEFLGAWEKINNENFKLVEFDQFRSEAGLNGFVLSPQKWIKETNAIGITSQSGR
                     YGGTFAHSDIAFEFASWLSPEFKLYIIQDYQRLKQEEAYKNQLDWQVNRYISKLNYTI
                     QTDAIKENIVPTLQPYQISFAYSSEADLINVALFGMTAKEFKNAYPDREGNQRDNATI
                     EQLLVLNNLQSLNAEMIKQGLSQSNRLTELNRIAKEQLDVLYKNNQKALDSLKRLSDK
                     "
     gene            1441..2613
                     /locus_tag="U1404_001727"
     CDS             1441..2613
                     /locus_tag="U1404_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000605383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5348646.1"
                     /translation="MIMKITEVKKKNGATVYRASVYLGIDAITGKKVKTNVTGRTKKE
                     VKNKTQQAIATFKTDGATRYQNATITSYKELAELWWNSYKHTVKPNTRGNIRGLLKNH
                     VIPLFGAYKLDKLTTPLLQSIVIKLADKANTGEAGAYLHYDKIHALNKRILQYGVVMQ
                     VLPYNPAREVILPRNAKKATRKKVKHFNDEQLKQFLGYLDGLDLTNYRNLYEATLYKF
                     LLATGCRINEVLALHWSDIDLNNATVSITKTLNRYGSINSPKSNASIRDINIDSQTVA
                     MMKEYRRRQIQEAWTLGRSETVVFSDFIHDYPEDKTLGNRLTTRLRNIGLPNIGFHGF
                     RHTHASLLLNSGIPYKELQHRLGHSRISITMDIYSHLSKENAKNAVAFYEKALGNL"
     gene            2751..3134
                     /gene="yaaA"
                     /locus_tag="U1404_001728"
     CDS             2751..3134
                     /gene="yaaA"
                     /locus_tag="U1404_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HEM5348647.1"
                     /translation="MEFKLFDDYITLQALLKTTGILHSGGAIKGFLEENTILFNGEDE
                     KRRGKKIRVGDVITLPDHNTSITIVAPSAEEIKQHQEDQAEKERVAAIVKKLNQENKK
                     NKKQVKTPKKATKNTERKPVRFPGM"
     gene            3137..4231
                     /gene="recF"
                     /locus_tag="U1404_001729"
     CDS             3137..4231
                     /gene="recF"
                     /locus_tag="U1404_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEM5348648.1"
                     /translation="MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIY
                     VLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQA
                     KLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
                     NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREEL
                     TIEYQTSIKLTDDVNLIDKFLTELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYG
                     SQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDTIQTF
                     ITTTSLDHLHKLPDSLKIFHIESGKVTESE"
BASE COUNT         1514 a          896 c          809 g         1097 t
ORIGIN      
        1 gataaaggct gctgctttag aagaagctag aaaagataaa aatgattttg aagattataa
       61 gttaacgtgg ggattagact aaccgcccac gctccctaca cgccccctca ccacgttcaa
      121 acacttctcg ggtatattta ccctgccaag ctattccacg cgcccagggg ctttctagtg
      181 gactgtgtgg agtgaaaaaa agtccgcatt aaaaaaagtc agtttttatc agtagatgaa
      241 aaagtaaggt tttgtaaggt tgtatatttt agcaacctca ataaacctca acttctatat
      301 tagttgtata ttagcatttg ttagcaatct gcgcgtgctt tcctcgtgct tcagcaagtc
      361 cgctgactta gtaaaggtta tacctatcaa ttttgttgac gccaacaaaa ctgtaaatcc
      421 tataacaatt ttagaaaggc tcataatggt taaaattaac gcaaatggta aagaaataac
      481 tttactttcc acaaatactg attatgtcag tctgacagat atcgctaaat atcgaaatcc
      541 agacgctcca gccgatatta ttaaaaactg gatgaggagt agaaatacta ttgaattcct
      601 aggagcttgg gaaaaaataa ataatgaaaa ttttaaactg gtcgaattcg accagtttag
      661 aagcgaggct ggattaaatg gcttcgtact atctccgcaa aaatggataa aagagacaaa
      721 tgccattggt ataacttccc aatctggccg atacggcggt acattcgccc actctgatat
      781 agcttttgaa tttgcttcct ggctttcacc agagtttaag ctttatatca ttcaagatta
      841 tcagcgccta aaacaagaag aagcctacaa aaaccagtta gattggcagg taaaccgcta
      901 tatttcaaaa cttaattaca ccatacaaac ggacgctatc aaagaaaaca ttgtgccaac
      961 tctccagccc tatcaaattt ctttcgccta ttcctctgaa gctgatttaa taaacgtcgc
     1021 tttatttggt atgactgcaa aggaattcaa gaacgcctat cctgatagag aaggtaatca
     1081 gcgagataat gccactattg aacagctatt agttctaaat aacttacaaa gtcttaacgc
     1141 tgaaatgatt aaacaaggac tatcacaaag caaccgacta actgaactaa acagaattgc
     1201 taaagaacag ctagacgtgc tatataaaaa caatcagaag gcccttgata gcctcaaaag
     1261 attgagcgat aaataagccc atataagagt catagcacca ctttaaaacg taaccatata
     1321 aattatcatc ttacccgaaa caaacgaaaa tagggctatt ctcgtaagcc tacgcatgat
     1381 ataaacctaa aacattctaa aatcttttta ataacagctt gcctgctgat ggaaaggttt
     1441 atgatcatga aaataactga agtaaaaaag aaaaacggtg ctactgtgta ccgtgccagt
     1501 gtttatctag gaatagatgc catcactggt aagaaagtca agactaatgt cacgggtagg
     1561 accaagaagg aggttaaaaa caaaactcag caagctattg caacttttaa aacagacggg
     1621 gcaacacgct accaaaatgc caccataacc agttacaaag agttggcaga attgtggtgg
     1681 aatagctata agcacacagt aaaaccaaat acccgtggaa acatcagggg cttactgaaa
     1741 aatcatgtta taccactttt tggagcctat aagctcgata aactgacgac cccactcctc
     1801 caaagcatcg tcatcaaatt agcagacaaa gcaaatacag gggaagctgg tgcctatctg
     1861 cactatgaca aaatccacgc gctgaacaaa cgtatattgc aatacggtgt tgttatgcaa
     1921 gttctgccat acaatccagc tcgggaagtc atattgccca ggaacgcaaa aaaagccact
     1981 cggaagaagg taaagcattt caacgacgag cagcttaaac agtttcttgg ctacttggac
     2041 ggcttagact taaccaatta cagaaatctg tatgaagcca ccctatacaa gttcttgctg
     2101 gccactgggt gccgtatcaa tgaggtgctg gcactgcact ggtcagatat tgacttgaac
     2161 aacgccacgg tcagcatcac gaagacacta aaccgctatg ggtcaatcaa ttcccccaag
     2221 tcaaatgcca gcatacgcga tataaacatc gatagccaga cagtagccat gatgaaagaa
     2281 tacagacggc gacagataca agaggcttgg accctcggac gctctgaaac ggttgtattt
     2341 tccgacttta tccatgacta tcctgaggat aagaccctgg ggaacaggtt gaccacacgc
     2401 ctgaggaata tcggactgcc taacatcggc tttcacggtt tccgccacac ccacgctagt
     2461 ctactgctta actctggaat accctacaag gaactccagc accgccttgg tcattctaga
     2521 atatcaataa ccatggacat ctatagccac ctctcaaaag agaatgcaaa aaacgctgtt
     2581 gcattttacg aaaaagctct cgggaatctt tgagggtgaa caaaaaggtg aacaaattca
     2641 gtttacagta ctttacaaga ctgtaaaacc ccttgataca actggggttt cagcccctaa
     2701 aatcaaaatt ataccatttt gtgatataat attctgtaac gaggtgactt atggaattta
     2761 aattatttga tgactacatc acattacaag cattgttaaa aacgactggt attctccatt
     2821 caggaggtgc cattaaaggt ttcttagaag aaaataccat tcttttcaat ggagaggatg
     2881 aaaaaagacg cggtaaaaaa atccgtgtcg gagatgttat cacactccca gaccacaaca
     2941 ccagcatcac aatcgtcgct cctagtgcag aggaaatcaa acagcaccaa gaggatcaag
     3001 ctgaaaaaga acgtgtggct gcaatcgtta aaaagttaaa tcaagaaaat aaaaagaata
     3061 agaaacaggt aaaaacgcct aaaaaagcaa ctaaaaatac tgaaagaaaa cctgttcgtt
     3121 tccctggtat gtagacatgt ggctagaacg attagagtta caacattttc gcaattacaa
     3181 ccaattagat attgagttcc acaaagggct caatgtcttt ttaggcgaaa acgcccaagg
     3241 aaaaaccaat attctagaat ctatctatgt tttagcctta acacgaagtc atcgaacacg
     3301 gacagataag gacctactac agtttcaaga aaaggaatta tctatttctg gtttactcca
     3361 tcgcacaagc ggtaaagttc cccttgacat tcacttgaca gacaaggggc gagtgaccaa
     3421 ggtcaaccat ctcaaacaag ccaagctttc caactatatc ggccacatga atgttgttct
     3481 cttcgcccct gaagatttac agctgataaa aggtgcgcct gctttgagaa gaaagttcat
     3541 cgatgtcgag ctcgggcaaa tcaagccact ctatctctct gacctatcga attataacca
     3601 cgttttaaaa caaagaaata cttacctcaa atctacagat aagattgatg agaacttcct
     3661 atccgtgtta gatcagcaac ttgctgaata tggtagtcgt gttatccaac atcgtattga
     3721 ctttctaaag aaattagagg aattcggaaa tagaaaagtt caagaaatat ctggcaatcg
     3781 ggaagaattg acaatcgaat accaaacctc aatcaaattg acagatgatg tcaatttaat
     3841 tgacaaattc ttgacggaat tggaaaggtg tcgcaaacgt gatttattta agaaaaatac
     3901 aggagttgga ccacatcgag atgatgtagc tttctttata aatggaatga atgcccatta
     3961 tggtagccaa ggtcagcacc gcagtctcgt tctgtcactc aaactggctg aaattgagct
     4021 gatgaaggag gtcacacgag aatacccaat tctactctta gatgatgtta tgagtgagct
     4081 agataataat cgtcaaatca aactactaga aactattaca gatacgattc aaacatttat
     4141 tacaacgaca tctttagacc atttacataa gctacctgat agtttaaaaa tcttccatat
     4201 tgagtctggt aaggttactg agtcagaata agattgttta cactgttgtc aataaagttt
     4261 acaaaaaagt aaaaccctgc caagagggtc ttgcagcacg tagacaaact cctaaa
//
LOCUS       DASGCC010000136         4256 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.137, whole genome shotgun sequence.
ACCESSION   DASGCC010000136 DASGCC010000000
VERSION     DASGCC010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4256
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.137"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            76..1113
                     /locus_tag="U1404_001730"
     CDS             76..1113
                     /locus_tag="U1404_001730"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM5348649.1"
                     /translation="MKEGDLLFTPISEKIDINQVREHSKLSPETLAKKQARDRELEAI
                     LKGEDNRLLLVIGPCSSDNEEAVLDYAHRLAKLQEEVKDKIFMVMRVYTAKPRTNGDG
                     YKGLMHQPDTDAAPSLINGIKAVRNLHYRVITETGLTTADEMLYPENLPLVDDLVSYI
                     AIGARSVENQQHRFVASGIDVPTGLKNPTSGNLKVMFNGLFAAQKKQSFLFNNTEVET
                     SGNPLTHVILRGAVNENGKYLPNYYYDNLLETIDLYDQFGLKNPFIIIDTNHDNSGKN
                     YLEQIRIVRQTLINRDWNESIRNYVRGFMIESYIEDGRQDNPDVYGKSITDPCLGWEK
                     TQELIREIYNR"
     gene            1123..2148
                     /locus_tag="U1404_001731"
     CDS             1123..2148
                     /locus_tag="U1404_001731"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM5348650.1"
                     /translation="MGIHKRSTSLDIDKVKELSKLEGEFLAAKNRRDEELKRIIRGED
                     DRLLLVIGPCSSDNEEAVLEYARRLSKLQEEVKDKIFMVMRVYTAKPRTNGEGYKGLV
                     HQPDTSKLPDLINGIAAVRNLHYRVITETGLTTADEMLYSANYPLVEDLVSYHAIGAR
                     SVEDQEHRFVASGVDMPTGMKNPTSGNLTVMFNGIYAAQNKQNFIYRDAEVDTDGNPL
                     AHAILRGANTEKGGYEPNYYYDILLKTIKQYEQFGLKNPFIVIDTNHDNSGKTYLEQI
                     RIVRQTLINRAWNESIRKYVRGFMIESYLEDGRQDSPEVFGKSITDPCLGWKKTEALI
                     REIHQTV"
     gene            2194..3063
                     /locus_tag="U1404_001732"
     CDS             2194..3063
                     /locus_tag="U1404_001732"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM5348651.1"
                     /translation="MNIDGYTRLAAVVAKPIKHSISPFIHNLAFKETGVNGVYVAWEI
                     PEEDLAVTLENIKRYDMFGINLSMPYKQAVIPYLDDLTASARLIGAVNTVIHKDGKLI
                     GHNTDGIGFFKSLERLKGFQVKNKRLTILGGGGASTAIIAQATLDGAKEITIFCRQQS
                     LERTQASLTPIAQATGVPMQVLALDDSQLLQEHITNSDLLVNGTSVGMDGYSQPVPST
                     IRFPENLLVADVIYQPFETPLLKLAQSQGNPTINGLGMLLFQAAEAFQAWTGKEMPTD
                     LIWDQLVQKYDIK"
     gene            3076..4143
                     /locus_tag="U1404_001733"
     CDS             3076..4143
                     /locus_tag="U1404_001733"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEM5348652.1"
                     /translation="MKLTVNLPNTPYDILIQRGSLAQTGTWIKELWKPQKIAIITDDH
                     VGSLYRETVQSSLEQAGFETIVFEFPEGEASKNLDTVNQAYEFLVKNGMTRSDGIIAL
                     GGGVVGDLAGFVASTYMRGIHFLQIPTSLTAQVDSSIGGKTGVNTPFAKNMVGTFCQP
                     DGVLIDPDTLKTLGKRELIEGMGEVVKYGLIDDVELWETLDQLDGSVESILEHADYII
                     YHSCEVKRKVVVEDELDNGVRLYLNFGHTIGHAIEVTAGYGQVMHGEAVAIGMVQISR
                     AAEKKGLMPAGMTEKIIAMCEKFGLPTTHQPWNVDELYATLTHDKKARGKTIKLVIVP
                     QLGQAAIHQIPMEEMLEFLQV"
BASE COUNT         1332 a          945 c          856 g         1123 t
ORIGIN      
        1 ctgtaaattc tacataaaat catggatatt gattttaaat tcttaaaaat aatggtataa
       61 ttgaggaacc tataaatgaa agagggagat ctattgttta caccaatcag cgaaaaaatt
      121 gacatcaatc aagtacgaga acattcaaaa ctttctccag aaacacttgc taaaaaacaa
      181 gctcgtgacc gtgaacttga agccatctta aaaggtgaag ataatcgtct tctcctagta
      241 attggaccat gttcttctga caatgaagag gctgtcttag attatgctca ccgcttggcc
      301 aagctccaag aagaggtcaa agataaaatt tttatggtca tgcgcgtcta tactgccaag
      361 ccacgtacca atggtgatgg ttataaagga ctcatgcacc aaccagatac agatgctgca
      421 ccaagcctca tcaacggaat caaagcagtt cgtaacctcc actatcgtgt cattacggaa
      481 acaggtttaa ctactgctga cgagatgctc taccctgaaa acctgccttt ggttgatgac
      541 ttggtttcct acatcgctat cggagctcgt tcggttgaaa atcagcagca ccgttttgta
      601 gcgtcaggca tcgatgttcc aacaggcttg aaaaatccaa catctggtaa cctcaaagtc
      661 atgttcaacg gtctttttgc tgctcagaag aagcaatcct tcctcttcaa caatactgaa
      721 gttgaaacat ctggcaaccc acttactcac gttattcttc gtggcgcagt caatgaaaat
      781 ggtaaatacc taccaaacta ttactatgac aatcttctag aaaccattga cctctatgat
      841 caatttggtt tgaaaaatcc atttattatt atcgatacca accatgacaa ttctgggaaa
      901 aattatttgg aacaaatccg tatcgtccgt caaaccttaa tcaaccgtga ctggaacgaa
      961 tccattcgta actacgttcg cggattcatg attgaatcct acattgaaga cggtcgccaa
     1021 gacaatccag atgtctatgg aaaatccatc acagaccctt gcttaggctg ggaaaaaaca
     1081 caagaactca tccgagaaat ttacaacaga taggaagata ttatgggaat tcacaaacgt
     1141 agcaccagtt tagacatcga taaagtaaag gaactttcca agttagaagg agaatttcta
     1201 gctgcaaaaa atcggcgcga tgaagaactg aaaagaatta tccgaggcga agatgatcgt
     1261 ctgctcttgg ttatcggtcc ttgctcatca gataatgaag aggctgttct agaatatgca
     1321 cgtcgtctct ctaagcttca agaggaagtc aaagataaaa tcttcatggt catgcgggtt
     1381 tacacagcta agccacgtac caatggggaa ggctataaag gactggttca tcagccagat
     1441 acttctaaat taccagacct cattaacgga attgcagccg ttcgtaattt gcattaccgt
     1501 gtcattactg agaccggact cacaactgct gatgaaatgc tctactctgc caactatcca
     1561 ctggtggaag acttggtgtc ctaccatgct atcggagcac gttcggttga agaccaagaa
     1621 catagatttg ttgcatcagg tgtcgatatg ccaactggta tgaaaaaccc aacttctggt
     1681 aatttgaccg ttatgttcaa tggtatctac gccgcacaaa acaaacagaa ctttatttac
     1741 cgtgatgcag aagttgatac agatggcaac cctctagctc atgctatcct tcgtggtgcc
     1801 aatactgaaa agggcggtta tgagccaaac tactactatg atattctctt gaaaaccatc
     1861 aaacagtatg aacaatttgg tcttaaaaat ccatttatcg taattgatac caaccacgac
     1921 aattctggta aaacttacct ggaacaaatc cgtatcgtcc gtcaaaccct catcaaccga
     1981 gcttggaacg aatctattcg caaatatgtc cgtggtttca tgattgaatc ctacttagaa
     2041 gacggccgtc aagatagccc tgaggtattc ggcaaatcca ttaccgaccc ttgcttaggt
     2101 tggaaaaaaa cggaagctct gattcgtgaa attcatcaaa ccgtctaatt ctttccttaa
     2161 ttttttatac gataaataat ttggaggtaa gctatgaaca ttgatggtta cactcgtctt
     2221 gctgccgttg ttgcaaagcc aatcaaacac tccatctccc ccttcattca taatctggct
     2281 tttaaggaaa caggtgtaaa tggtgtctat gtcgcttggg aaattcccga ggaagatttg
     2341 gctgtaacgc ttgaaaatat caaacgatat gatatgtttg gtatcaacct ttccatgccc
     2401 tataaacaag ctgtcattcc ttatctagat gatttaacag cctctgcacg cctgattggc
     2461 gcagtcaata ccgtgattca taaagatgga aaactaatcg gtcacaacac cgatggaatt
     2521 ggatttttca agagtttgga aagactaaaa ggctttcaag ttaagaacaa gcgactaacc
     2581 atcctaggtg gtggtggtgc ttctactgct atcatagctc aggctacatt ggatggtgca
     2641 aaggaaatta ccattttctg ccgtcaacaa agcttggaaa gaacacaggc gagtcttaca
     2701 cctattgctc aagcaactgg agttcccatg caggtcctag cgcttgatga tagccaatta
     2761 ctacaggaac atatcaccaa ctccgactta ctagtcaacg gaaccagtgt aggcatggat
     2821 gggtattctc aacctgttcc ttctaccatt cgctttcccg aaaatctttt ggttgcggat
     2881 gtgatttatc aaccattcga aacaccttta ttaaaactag cccaatcaca aggcaaccct
     2941 actattaacg gtttgggcat gctccttttc caagcggctg aagcattcca agcctggact
     3001 ggtaaggaaa tgccgactga cttgatttgg gaccaattag tccagaaata cgacatcaaa
     3061 tagagaggaa atctgatgaa actgaccgtc aatcttccca acactcccta cgacatcctt
     3121 atccaaagag gaagtttagc acagacaggt acatggatca aagaactttg gaaacctcag
     3181 aaaatcgcca ttattacaga tgaccacgtt ggctcactct atcgcgaaac agttcagtca
     3241 agcttagaac aagctggttt tgaaaccatt gtttttgaat ttccagaagg tgaagcctca
     3301 aaaaatcttg ataccgtcaa ccaggcctac gaatttctcg taaaaaatgg tatgacacga
     3361 agtgatggaa tcattgctct cggcggggga gtcgttggcg atttggcagg ttttgtcgct
     3421 tctacctata tgcgaggtat ccatttccta caaatcccaa ccagcctaac tgcccaagtc
     3481 gattcttcta tcgggggaaa aactggcgtg aacaccccat ttgccaaaaa tatggtgggg
     3541 accttctgcc agccagacgg cgttctcatt gaccctgata ccctaaaaac actcggcaaa
     3601 cgagaattga ttgaaggaat gggcgaggtt gtcaaatatg gcttaataga tgatgtggag
     3661 ctctgggaaa ccctagacca attagacggc tctgtcgaga gcattctgga gcatgctgac
     3721 tatatcatct accactcctg tgaagtcaaa cgcaaggttg ttgtcgaaga tgaattagac
     3781 aacggtgtca gactctacct caacttcggt cacacgattg gacatgctat tgaagtgacc
     3841 gctggctacg gccaggtcat gcacggtgaa gctgttgcca ttggtatggt acaaatctca
     3901 cgcgcagctg agaaaaaagg actgatgcca gctggtatga cagaaaagat tatcgccatg
     3961 tgtgaaaaat tcggcttgcc gactacacac cagccttgga atgtagatga attatatgcc
     4021 accctaactc acgataaaaa agcacgtggc aagaccatca aacttgtcat cgttcctcaa
     4081 ttgggacagg ctgccatcca tcaaattcca atggaagaaa tgctagaatt tctacaagta
     4141 tagtcattta gttgactttt acgtcgaagt aataaaagtc aactaatact caatgaaaat
     4201 caaaaacaga ctaggcgacg cagatgcaga tagaactgaa gttcatcaaa tcaagt
//
LOCUS       DASGCC010000137         4247 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.138, whole genome shotgun sequence.
ACCESSION   DASGCC010000137 DASGCC010000000
VERSION     DASGCC010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4247
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.138"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            105..1253
                     /locus_tag="U1404_001734"
     CDS             105..1253
                     /locus_tag="U1404_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HEM5348653.1"
                     /translation="MKHVFIIGSRGLPAKYGGFETFVQQLVSHQQSEKICYHVACLSD
                     TSHHQHSTYLGADCFTINPPKLGPARVIAYDMMAITYALKIIKEQQMERPIFYILGNT
                     IGGFIVPFAKQIHSVGGTLFVNPDGLEWKRAKWAKPVQRYLKFSEKMMVKYADLIIAD
                     NEGIEDYIQSEYSATNTRFIAYGTDLSPTKLTKESEQVRQYFTNWNIKEKEFYLIIGR
                     FVPENNYVTAIKEFMASNTRRDLVIVANHEGSAYFQKLKDETGFISDKRIKFVGTVYD
                     QELLKYLRQECRAYIHGHEVGGTNPSLLEALAQTNENLVLGVDFNRKVALEGARYWSK
                     ESGSLSQLINQIDENAEAVELGEIAKKHMKDEYTWEKIVQEYEELFLQ"
     gene            1250..2179
                     /locus_tag="U1404_001735"
     CDS             1250..2179
                     /locus_tag="U1404_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5348654.1"
                     /translation="MKVNILMSTYNGQQFLAEQIRSIQEQTYTDWTLFIRDDGSSDRT
                     REIIKDFVEQDQRIHFIDVETDENLGVIKSFHRLIHYDTADFYFFSDQDDVWLPNKLE
                     VSLKKAQAYPTNLPLMVYMDLKVVNQNLEVMAESMVKSQSHHANTELVQELTENTVTG
                     GVAMINHHLAEMWQVTEDILMHDWYLALLASALGKLVFIDKPGELYRQHADNVLGART
                     LSKRFKKWIRPHILFAVYWDLIKNSQKQARHLLQMPLSQSNRELIEAFVTIMDKPMLE
                     RFRILRKYGLRKNKTFHTLVFTTLIVTKFAYKE"
     gene            2182..2988
                     /locus_tag="U1404_001736"
     CDS             2182..2988
                     /locus_tag="U1404_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348655.1"
                     /translation="MNLLNKENQILLREMIKTDFKLRYQGSLIGHLWSILKPMLLFTI
                     MYLVFVRFLRFDDGTPHYAVGLLLGMVTWNFFTEATNMGMMSIVSRGDLLRKLNFSKE
                     IIVFSSVAGAAINYAINLMVVFVFAAINGVPFTWSILIIIPLFFELALLATGIAFILS
                     SLFVRFRDIGPIWEVFLQAGLYATPIIYSLTFILQRGQVTFAKLMMLNPVAQIIQDLR
                     HFIVYSGNTTVSELIENPVIVAIPYILPVVVYLLGITVFRKNAKKFAEIL"
     gene            2988..4202
                     /locus_tag="U1404_001737"
     CDS             2988..4202
                     /locus_tag="U1404_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348656.1"
                     /translation="MVKNNNIAVKVEHVSKSFKLPTESSQSLRTTLVNLFKGIKGYVE
                     YNVLQDISFEVEKGDFFGIVGRNGSGKSTLLKILSQIYVPERGTVAVDGKLVSFIELG
                     VGFNPELTGKENVYLNGAMLGFTAEEIDAMYDDIVEFAELSEFMNQKLKNYSSGMQVR
                     LAFSVAIKAQGDILILDEVLAVGDEAFQRKCNDYFLERKKSGKTTILVTHDMGAVKKY
                     CNKALLIEKGYVKALGEPDDVANQYSFDNVLASISEVTENEEPLHQSDIVKDLQINLV
                     SKNQIEPDESIEIEFRYTVLEDIETHVAFTFLDLERHFDVYNDNSMDLKTFGKGEKFF
                     RVKCKLPSINQAKLKMAVSVRNSNKQPLLFAKTSDTPAIFISRKFSTDNIAEEDAATG
                     FIQRNSQWELLD"
BASE COUNT         1386 a          646 c          881 g         1334 t
ORIGIN      
        1 ggcgtagaaa aagaaaagcc tttataacca aactaggata gaattaggaa aaaaaactaa
       61 aaaatggtat aatgaaaaga actgcaattt gatggagagg attcatgaaa cacgttttta
      121 ttatcggtag tcgtggactg cctgcaaaat atggtggctt tgagaccttt gtccaacaat
      181 tggtcagtca ccagcaatct gagaagattt gttatcatgt ggcttgttta tcggatacaa
      241 gtcatcacca acattcgacc tacctaggtg cagattgctt caccattaat ccaccaaaac
      301 ttggaccggc tcgtgtgatt gcttatgata tgatggcgat cacttatgca cttaaaatca
      361 ttaaggaaca gcagatggag cgaccaattt tctatatctt gggaaatacc ataggtggct
      421 tcatagtacc ttttgcgaaa cagattcact ctgttggagg taccttgttt gtcaatccag
      481 atggtttgga atggaaacgt gccaagtggg ctaagccagt ccaaaggtat ctaaaatttt
      541 ctgaaaaaat gatggtcaaa tatgctgatt tgattattgc tgataatgag ggaattgagg
      601 attatattca atctgaatac tcggctacca atacacgctt tattgcctat ggtacagatt
      661 taagtccgac taagttaaca aaagaatctg aacaagttcg ccaatatttt acaaattgga
      721 acattaaaga gaaagaattt tatctgatta tcggtcgttt tgtacccgag aataactatg
      781 tgacagcaat taaggagttt atggcaagca acacgagacg tgatttagtc atcgttgcaa
      841 accatgaagg ctctgcctat tttcaaaaat tgaaagatga gacaggcttt atatccgata
      901 agcggattaa gttcgtagga acagtatatg accaagaact acttaagtat ctgcgccaag
      961 aatgtcgagc ttatattcat ggacatgaag ttggaggaac caatcctagt ctcctagaag
     1021 cgctggcgca aaccaatgaa aatttggttt taggtgttga ttttaaccgc aaagttgccc
     1081 tagaaggtgc tcggtattgg agtaaggagt caggtagcct gagtcaatta attaaccaaa
     1141 ttgatgagaa tgctgaagcg gtggaattag gagaaattgc gaaaaaacac atgaaggatg
     1201 aatacacctg ggaaaaaatc gtccaagagt acgaggaatt atttttacaa tgaaagtaaa
     1261 catactcatg tcgacctaca atggtcaaca gttcttagct gagcaaattc gctctattca
     1321 agaacagact tacacagact ggacactgtt cattcgtgat gatggttcca gtgatcgaac
     1381 tagagagatt attaaagatt ttgttgaaca agatcagcga attcacttca tagatgttga
     1441 gacagacgaa aatctcggtg tcatcaaaag ttttcatagg ctaattcatt atgatactgc
     1501 tgatttctat tttttcagtg accaagatga tgtttggcta ccaaataaac tggaagttag
     1561 cctgaaaaaa gcacaagcct atccaacaaa tttgccattg atggtttata tggacctcaa
     1621 agttgtcaat caaaatctag aagttatggc agaaagcatg gtaaaatctc aatctcatca
     1681 tgccaatacg gaattggtgc aagagttgac tgagaatact gtaactggcg gtgtcgccat
     1741 gattaatcat catcttgctg aaatgtggca agtaactgag gatattttga tgcatgactg
     1801 gtatttagct ttgttggcct cggctttggg taaactggtt tttattgaca agcctggcga
     1861 actctatcgc cagcatgcgg ataatgtttt gggagctaga accctttcta aacgatttaa
     1921 aaaatggatt cgtcctcaca ttttatttgc agtttattgg gacttgatta aaaatagtca
     1981 aaaacaagcc cggcatttat tacaaatgcc cctttctcaa tcaaatagag aattaataga
     2041 agcctttgta accattatgg ataaaccaat gcttgaacga ttcaggattt tgagaaaata
     2101 tggtttaaga aaaaacaaaa cctttcatac attagtattc acaacactga ttgtgacaaa
     2161 atttgcatat aaggaataac aatgaattta ttaaataaag aaaatcaaat actcttaaga
     2221 gagatgatta aaacagattt taaattacgt taccaaggtt ctctcattgg gcatctttgg
     2281 tcgattttga aaccgatgtt actttttaca attatgtatt tagtatttgt tcgttttttg
     2341 cgctttgatg atggaactcc tcattatgca gtagggttat tattaggtat ggtaacctgg
     2401 aactttttta cagaagcaac taatatgggg atgatgtcta ttgtttcacg cggagattta
     2461 ttgcggaagt tgaatttttc taaagaaatt attgtatttt cttcagttgc aggagctgca
     2521 attaattacg ccattaactt aatggttgtg tttgtatttg ctgctattaa cggggttccc
     2581 tttacttggt ccattctaat tataatccca ttgttttttg aattggcatt actagcaaca
     2641 ggtatagctt tcattttatc ctctttattt gtaagattta gagatattgg tccaatttgg
     2701 gaagtgttct tacaggctgg attgtatgca acaccaatta tttattcact aacattcatt
     2761 ttacagcgtg ggcaagtaac atttgctaaa ttgatgatgt tgaaccctgt tgcacaaatt
     2821 attcaagact tgagacattt tattgtttat tctgggaata ctacagttag tgaattgatt
     2881 gaaaatcctg ttattgtggc aattccgtat attcttccag tcgttgttta cctattgggt
     2941 ataactgtgt ttagaaaaaa tgccaaaaag tttgcggaga ttttgtaatg gtaaaaaata
     3001 ataatattgc tgtgaaagta gaacatgtta gcaagagttt taagcttcca acggagagta
     3061 gtcagagtct aagaactact ttagtcaatt tatttaaagg gattaaaggc tacgtagagt
     3121 ataatgtttt gcaggatatc agtttcgaag ttgaaaaagg agattttttt ggaattgttg
     3181 ggcgcaatgg ttctggtaag tctacactgt taaaaatttt atctcaaata tatgttcctg
     3241 aaagagggac tgtagctgtg gatggtaaat tagtttcttt tattgaactt ggtgttgggt
     3301 ttaatccgga actaactggt aaggaaaatg tatacctaaa cggtgcgatg ttaggattta
     3361 ctgcagaaga aattgatgca atgtatgatg atattgttga atttgcggaa ttgagtgaat
     3421 tcatgaatca aaagttgaaa aactattcta gtggtatgca ggtacgttta gccttttcag
     3481 ttgccattaa agctcaagga gatattctga tacttgatga ggttctagca gtcggtgatg
     3541 aggcctttca gcgtaaatgt aatgattact tcctagagcg taaaaaaagt ggaaaaacaa
     3601 ccattcttgt cacccatgat atgggagctg tgaaaaagta ttgtaataaa gctcttctta
     3661 tagagaaagg atacgtcaag gcattaggag aacctgatga tgtagctaat caatacagtt
     3721 ttgataatgt gcttgcctca ataagtgaag ttacagaaaa cgaagaacct ctgcatcaga
     3781 gtgatattgt aaaagatttg cagattaacc tggtctcaaa aaatcaaatt gaaccagatg
     3841 aatcaattga aatcgagttt agatatacgg ttttagaaga tattgaaaca catgttgcat
     3901 ttacattttt agatttagaa cgtcattttg atgtatataa cgacaattct atggatttaa
     3961 aaacgtttgg caaaggcgag aagtttttcc gagtgaaatg taagctaccc tcaattaatc
     4021 aagcaaaatt aaaaatggcg gtgtcagtac gaaatagtaa taagcagccg ttattatttg
     4081 ccaagacttc tgacacacca gctattttta ttagtaggaa gtttagtact gataatattg
     4141 cagaggaaga cgcagcaacc gggtttattc agagaaatag ccaatgggag ctgctagatt
     4201 aataaaatat aacggaggca gaatgtcgcg tttgttggta tatgttc
//
LOCUS       DASGCC010000138         4185 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.139, whole genome shotgun sequence.
ACCESSION   DASGCC010000138 DASGCC010000000
VERSION     DASGCC010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4185
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.139"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(172..449)
                     /locus_tag="U1404_001738"
                     /pseudo
     CDS             complement(172..449)
                     /locus_tag="U1404_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000018958.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            620..1969
                     /locus_tag="U1404_001739"
     CDS             620..1969
                     /locus_tag="U1404_001739"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000862950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEM5348657.1"
                     /translation="MKMIDIVKNKKVLVLGLAKSGESAARLLDKLSAIVTVNDGKPFE
                     ENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTE
                     VELAYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGYPASSVAQTATA
                     EDTLVMELSSFQLMGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAED
                     FVVLNFNQKEAKELAEQTKATVVPLSTLEVVDGAYLADGKLYFKGEYIMDADQIGVPG
                     SHNVENALATIVVAKLLGVDRQAIQESLSAFGGVKHRLQFVGEINGVSFYNDSKSTNI
                     LATQKALSGFDNSKVILIAGGLDRGNEFDELVPDLVGLKKMVILGQSAPRVQRAADKA
                     EVETIEALDIADATRKAFAIAEKGDIVLLSPANASWDMYANFEVRGDVFLQTFEELK"
     gene            1972..3036
                     /locus_tag="U1404_001740"
     CDS             1972..3036
                     /locus_tag="U1404_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HEM5348658.1"
                     /translation="MKKIVFTGGGTVGHVTLNLLLIPRFLEEGWEVHYIGDGNGIEHE
                     QVVKSGLDVHFHSISTGKLRRYFSFQNMLDVFKVGFGVLQSVAIIAKIRPQALFSKGG
                     FVSVPPVIAANLLRVPVFIHESDLTMGLANKIAYKFATTMYSTFEQPASLTKVKHVGA
                     VTKVGKTNDKVTPIQLPEILSHFDKSLPTLLFVGGSGGAKVFNDLISQNSAALTERFN
                     IINLTGDSSLNQLDKNLYRVDYVTELYQPLMDLADVVITRGGSNTLFELIAMQQLHLI
                     VPLGRQASRGDQIENALYAEKKGYSKQIDESQLTFASLLVEVDELLKNKEFYIQNMTN
                     SNEIQSVDSFYNLLREDMGR"
     gene            3042..4136
                     /locus_tag="U1404_001741"
     CDS             3042..4136
                     /locus_tag="U1404_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEM5348659.1"
                     /translation="MTEKDSNVEESVLEVEQASQVELDSEQISPAEKESVLAEEKGLS
                     TDVSTDVDIPEMTAPDDEKSAFFEQWKARHQAYLAHKDAAEIQAVDEGQTEQENPEAK
                     KSKRVLFQGIERKTESLKSKKETGEKVQTLKVDIPSKVVWKAIPVLVTSLLLAALALY
                     FISPTSKKKQIEVVGNERLTAEQVENYSLISPDDYNVTVALHADAYAKNIKKNSSSVE
                     TATIKFQFPATFTIHIKEYAIIGYIQQQSQWYPVLSSGEIGGEPISQDSMPEGYTTIN
                     LSDKELIKELAIELGKIDAGIRSAIQTINLTPSKVTVDLLTFNMRDGNTVLVPLSEIS
                     QKVSYYTKIAAEVTVPTTIDMEVGIYRYAS"
BASE COUNT         1309 a          717 c          969 g         1190 t
ORIGIN      
        1 tcgttcttgg aataggaatc aagtgttgga tgatttttta gttcccaaga aattttgaac
       61 tattgaaaat gtttcaaagt cgatttgact ctggaacatt tttctattat agacattaga
      121 caatatggct gaatgaggta attgttcaac ttctaacctc ctgtcaactc aaatcaattg
      181 cctagaccga cgattgaaac gacttctttc tagtaacgga ccacgaggaa agaggtggca
      241 gatattgtag aaatgtcgtt gagatgtcat acctagttca gcttgtaaca aaagcaagac
      301 aaggagtaat ctatctgaaa gcctacatta cgccgaagtt aaaaggaatc tgggcaatag
      361 ttttggtaga aatgatgaga aatttgtgat aattggcgta cattccattg caaatgatga
      421 gatttagcag tatactgtaa gtggctcatt tggactaccc ctctgtatgt ttcgtcgctt
      481 acagtatagt ccatttgggc tttttattgt attttgaaat gaactagcgc tacgggtaga
      541 gtttactttt ctgtcctctg gcttgaaaaa ggtcttcgta aagggtaaaa taaggtgtta
      601 gaaagtaaag gtaattgaga tgaagatgat tgatattgta aaaaataaga aagtgctagt
      661 gctaggttta gctaaatcag gggaatctgc agcccgtctc ctagataaat tgagtgctat
      721 cgtcactgtt aacgatggaa agccttttga agaaaatccg actgctcaat ctttgttgga
      781 agatggtatc cgtgttattt gcgggagcca tcccttggaa ttattggatg aagatttcgc
      841 tttgatggta aaaaatccag gaattcgcta tgataatcct atggttgaaa aagcaattgg
      901 caaaggaatt ccagtatgga cagaggttga attggcctac ttggtatcag atgctccaat
      961 cgtggggata acaggttcga acggcaagac aacgacaacg accatgattg cagaagtctt
     1021 gaatgcagga aataaacctg caaaattatg tggaaatatt ggctatccag catcttcggt
     1081 cgctcaaact gcgactgcag aggatacctt ggtgatggaa ttatcatctt tccagttaat
     1141 ggggacagaa tctttccgcc cgcatatcgc cgttgtgacc aacctcattg ccagtcatat
     1201 tgattatcat gggacttttg aagactatgt agcagctaaa tggatgattc agggtcagat
     1261 ggcggctgag gattttgtgg tgctcaactt caaccagaaa gaagctaagg aattggctga
     1321 acagaccaaa gcaactgtag ttcctctttc tacgctggaa gtagttgatg gagcttactt
     1381 ggcagatgga aaactctatt tcaagggtga atacatcatg gatgctgacc aaattggtgt
     1441 tccaggttca cacaatgttg aaaatgcctt ggcaacaatt gtggttgcaa aattgttggg
     1501 agtagatcgc caagcgattc aggaaagttt gtctgccttt ggaggtgtca aacaccgctt
     1561 gcaatttgta ggtgaaatca acggggtttc cttctacaat gatagtaagt ctaccaatat
     1621 cttggcgact caaaaagctc tttcagggtt tgacaatagc aaggtcattt tgattgcagg
     1681 tggcttggac cgtgggaatg aatttgatga attagtccct gatttggtcg gactaaagaa
     1741 aatggtgatc cttggtcaat cagctccccg tgttcaacgt gctgcagata aggcagaagt
     1801 ggaaacgata gaagctctcg atattgcgga tgcgactaga aaagcctttg ccattgcaga
     1861 aaaaggagat attgtccttt taagtccagc caatgcaagc tgggatatgt atgccaattt
     1921 tgaagtgcgt ggcgacgtct tcttacagac ctttgaggag ttgaaataat catgaaaaaa
     1981 attgttttta caggcggagg gactgttggg cacgtgacgc tcaatctcct tttgattccg
     2041 cgatttttgg aagaaggctg ggaagtccac tatattggtg atgggaacgg tattgagcat
     2101 gagcaggttg tgaaatcagg tttagatgtc cattttcatt ctatttcgac tggaaaattg
     2161 cgccgttatt tctctttcca aaatatgttg gacgtgttta aagttggttt tggtgttctt
     2221 caatccgtgg ccattattgc taaaattcgt ccgcaagctc ttttttcaaa aggtgggttt
     2281 gtatcggttc cgccagttat tgctgctaat ttgctgcggg ttccggtctt tatccatgaa
     2341 tcagacttaa caatgggact ggccaataaa atagcctata aatttgcgac aaccatgtat
     2401 agtacttttg agcaacctgc tagcttgact aaagtaaaac atgttggtgc ggttacaaaa
     2461 gtggggaaaa cgaatgacaa agttacacca atccagttgc cagaaattct cagtcacttc
     2521 gataaaagtc tgccgaccct actgtttgta ggtggttcgg gcggtgctaa ggtctttaat
     2581 gatttaatca gtcagaatag tgctgctctg accgaacgat tcaatattat caatttgaca
     2641 ggggatagta gtctcaacca attagataaa aacctatata gagttgacta tgtgacagaa
     2701 ctttatcaac cgttgatgga tttagcggat gtcgttatta ctcgtggtgg ttccaatact
     2761 ctgtttgagt tgattgccat gcaacaactc catttgattg tgcccctagg acgacaggcc
     2821 agtcgagggg atcagattga aaatgctctc tatgcagaga aaaagggata ttctaagcag
     2881 attgatgaaa gtcaattgac atttgccagc ctgttagtag aagtagatga gctattgaaa
     2941 aataaggaat tttatatcca aaacatgaca aattctaatg aaattcagtc agtagatagt
     3001 ttttacaatt tgcttagaga agatatggga aggtaggtcc tatgacggaa aaagattcaa
     3061 atgtagaaga atcagtgcta gaagtggaac aggcatctca agtagaattg gattcagaac
     3121 aaatctcacc agccgagaaa gaatctgtat tagccgaaga aaaaggactt tctacggatg
     3181 tttctacgga tgtagacata cctgagatga ctgctccgga tgatgaaaaa agtgcctttt
     3241 tcgaacaatg gaaagcacgc catcaagcct accttgctca taaagatgct gcggaaattc
     3301 aggcagttga cgagggacag acagaacagg agaacccaga agctaaaaag agtaaaaggg
     3361 tcctttttca gggaatagaa agaaaaacag agagtctgaa atctaaaaag gaaacagggg
     3421 aaaaggttca aactttaaaa gttgatattc cttccaaagt agtctggaaa gctattccgg
     3481 ttcttgtgac gagtttgtta ctggcagctc tagccttgta ttttatttct ccaaccagca
     3541 agaaaaaaca aatagaggtt gtcggaaatg agcgactaac tgctgagcaa gtagaaaatt
     3601 atagccttat ctctccggat gattacaatg tgactgtagc tttgcatgca gatgcttacg
     3661 caaagaatat taagaagaat agttcgtccg ttgagacagc gacaatcaag ttccagtttc
     3721 cagctacctt taccattcac atcaaagaat acgcaataat aggctacatt cagcaacaaa
     3781 gtcagtggta tccagtattg tctagtggag agattggcgg tgaaccgatt tcacaggatt
     3841 ccatgccaga aggctacaca acgataaatt tatccgacaa ggaattaatc aaggaactgg
     3901 ccattgaatt gggtaaaata gatgcaggaa ttcgttctgc tattcagaca ataaatttaa
     3961 cgccaagtaa agtgaccgtg gatttgctga cattcaatat gagagatgga aatactgtat
     4021 tagtcccgtt gagtgagatt agccagaagg tgtcctacta tacaaaaata gcagcagaag
     4081 tgactgttcc aacaacaatt gatatggaag ttggtattta tagatatgcg agctgaaata
     4141 gataattttg taaagaaaaa gtaataaaaa aatcctttaa aaaca
//
LOCUS       DASGCC010000139         4134 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.140, whole genome shotgun sequence.
ACCESSION   DASGCC010000139 DASGCC010000000
VERSION     DASGCC010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4134
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.140"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            79..738
                     /locus_tag="U1404_001742"
     CDS             79..738
                     /locus_tag="U1404_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEM5348660.1"
                     /translation="MTPNKEDYLKCIYELGQLDQKITNKLIAEKMAFSAPAVSEMLKK
                     MVAEELISKDAKAGYLLSQTALEMVASLYRKHRLIEVFLVEQLGYSPEEVHEEAEILE
                     HTVSDHFINRLDLLLEQPQTCPHGGSIPQAGQPLIERYQTRLSQLTETGNYQLVRIHD
                     FYQLLQYLEQHELAVGDLLTVTAFDQFAQTITIQYKDKELAVPTAIAQQLFIEKSNRP
                     A"
     gene            complement(1154..1339)
                     /locus_tag="U1404_001743"
     CDS             complement(1154..1339)
                     /locus_tag="U1404_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348661.1"
                     /translation="MKKLLTNHFFYLTIAFLLILVIYFSGIDKRWIILASFLYFIPSQ
                     ILYRRRLRERLQEDQPE"
     gene            complement(1415..1858)
                     /locus_tag="U1404_001744"
     CDS             complement(1415..1858)
                     /locus_tag="U1404_001744"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEM5348662.1"
                     /translation="MKIVLQRVSQASVTIEGSIHGQIEQGLLLLVGVGPDDTQEDLDY
                     AVRKIVNMRIFSDEAGKMNKSVQDVAGKILSISQFTLFSDTQKGNRPAFTGAAAPALA
                     SQLYDAFNQALSAFVPVEVGVFGADMAVSLVNDGPVTIVLDTKNK"
     gene            complement(1860..4061)
                     /locus_tag="U1404_001745"
     CDS             complement(1860..4061)
                     /locus_tag="U1404_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM5348663.1"
                     /translation="MKEINFTGEEVVGLTATYLPAEDVAFVQKALDFATEAHKLQFRK
                     SGEPYIVHPIQVAGILAGLKLDAVTVACGFLHDVVEDTDVTLDDMEAEFGPEVRHIVG
                     GVTKLGKVEYKSHEEQLAENHRNMLIAMSQDMRVILVKLADRLHNMRTLKHLRKDKQE
                     RISRETMEIYAPLAHRLGISSIKWELEDMSFRYLNEVEFYKITRMMNEKRREREELVN
                     EVVDKLRDYTEERHLHGQIYGRPKHIYSIYRKMHDKKKRFDQLYDLIAIRCIMDTPSD
                     VYAMLGYIHELWKPMPGRFKDYIANQKANGYQSIHTTVYGPRGPIEFQIRTMEMHQVA
                     EYGVAAHWAYKRGGKATASEKELRWINNLIELQEGAGDAQTFVNSVKDDIFTERIYVF
                     TPDGAVRELPKDSVPIDFAYEIHTKVGERATGAKVNGRMVPLTTKLKTGDQVEIITSA
                     NSFGPSRDWVNLVKTHKARNKIKQFFKNQDKELSVSKGREMLQNLLQENGYVPNQYLD
                     RRHMDEVLQKTSYKTDESLFAAVGFGEVSAISIFNRLTEKERREAERAKAKAVADELV
                     NGGEVKHDNKDSLKIRHEGGVVIEGASGLLIRIAKCCNPVPGDEIVGYITKGRGVAVH
                     RVDCMNLKSQENYDVRLIDVDWEDENSTKEYMANIDIYGLNRSGLLNDVLKVLTNASK
                     NISSVNAQPTKDMKFATIHVSFGISNLATLTSLVDKIKSVPEVYSVKRTNG"
BASE COUNT         1171 a         1033 c          800 g         1130 t
ORIGIN      
        1 gattaatcta aaaaaatcat tttgtcaact gatttttaaa ttttttgata taatagtttc
       61 agaagaaagc gagttctcat gacaccaaac aaagaagatt acctaaaatg tatttatgaa
      121 ctaggtcaat tagaccaaaa aattaccaat aaactcatcg cagagaagat ggccttctcc
      181 gcaccagccg tttccgaaat gcttaaaaaa atggtagccg aagagctcat ttctaaggat
      241 gccaaggcag gttatctcct cagccaaact gcccttgaaa tggtagccag cctctatcgc
      301 aaacaccgct tgattgaggt attcttagtt gagcaactcg gctactctcc agaagaagta
      361 catgaagaag ctgagatttt agaacacacc gtttcagatc actttatcaa tcgcctagac
      421 ctgctactgg aacagcctca aacttgtcct cacgggggaa gcattcctca agcaggacaa
      481 ccgctcatcg aacgctacca gacacggctg tcacagctaa ctgagacagg gaactaccag
      541 cttgtccgta tccatgactt ctatcaactc cttcagtact tggaacaaca tgaattagct
      601 gtcggtgatt tactaaccgt cacagccttc gaccagtttg cccagaccat caccatccag
      661 tacaaggaca aagagctcgc cgtcccaaca gccatcgctc aacaattatt catcgaaaaa
      721 agcaatcgcc cagcctaaac aagctgagcg attttttctt ctaaaataaa tagttacctc
      781 tttttcaaat tacggaaaat agatctggct gcaaaaatag ttgcccacat acatacacca
      841 accaaagtag gaaacctata taaaaacagc ccaatagaaa atgagggtta taggttaaag
      901 gctgcaagac aaacatgaga atccctacca acccccaccg cataccccag gtcatctttc
      961 tctggataat ccactccagc caatcttctc caactgaact tctggtttcc agatactctt
     1021 gattaaggtc ttgaaaaaat tttctcatat ttctgcccac ctcatcctaa cttcaaagca
     1081 taaactacca ctttatgaca atattatcat agcacattgt tttcaaataa ccaatactgt
     1141 cgaaaaaacc agcctactcg ggctggtctt cttggagtcg ctctcttagg cgacgacggt
     1201 ataaaatctg cgatggaatg aagtaaagaa aacttgccaa aataatccag cgtttgtcaa
     1261 ttccactaaa gtaaatcact aaaatcaaaa gaaaggcaat cgtcaaataa aagaaatgat
     1321 ttgtgagcaa ttttttcata gtagcctcca tacctatttt tcaatattag tatatcaaaa
     1381 tacacaaata gagtacatac cgttgccaaa agttttactt atttttcgta tccaaaacaa
     1441 tagtcaccgg cccatcattg accaggctaa ccgccatatc cgccccaaaa acgcccactt
     1501 caacaggcac aaaggccgac aaggcctggt taaaagcatc atagagttgg ctggctaggg
     1561 caggagctgc agctcctgta aaggcagggc gattaccttt ttgggtgtcc gaaaagaggg
     1621 taaattggga aatggataaa atcttgcccg ccacatcttg aacggacttg ttcatcttgc
     1681 ctgcctcatc tgaaaaaatc cgcatattga caattttccg aacagcatag tccaggtctt
     1741 cctgtgtgtc atctggcccc acaccgacta ggagcaaaag cccttgttca atttgcccat
     1801 ggatacttcc ttcgatggtc acactggcct gtgatacacg ttgtagtaca attttcatct
     1861 tatccgttgg tccttttcac tgagtaaact tctggcaccg acttaatctt gtccaccaga
     1921 ctggtcaagg ttgccaggtt ggaaatacca aaggaaacgt ggatagtcgc aaacttcata
     1981 tccttggttg gctgggcatt gaccgaagaa atgttcttgc tggcattggt caaaaccttg
     2041 agaacatcat tgagcagtcc tgagcggttg agaccgtaaa tgtcaatgtt tgccatgtat
     2101 tccttggtcg aattctcatc ctcccagtcc acatcaatca agcgaacatc gtagttttct
     2161 tgactcttta ggttcataca gtctacacgg tgaacagcta ccccacgccc cttggtgatg
     2221 tagccgacaa tttcatcgcc aggtactgga ttacaacatt tggcaatccg tatcagcaag
     2281 cctgacgctc cttcaatgac cacgccacct tcgtgacgga ttttcagact atctttgttg
     2341 tcgtgtttga cttcgccacc attgaccaat tcatccgcga cagctttggc cttagcccgc
     2401 tcagcttctc gacgttcttt ctctgtcaga cggttaaaga ttgatatggc agaaacttct
     2461 ccaaaaccaa ctgccgcaaa aagggattcg tcggtcttat agctggtctt ttgcaggacc
     2521 tcatccatgt ggcgacggtc caggtattgg ttgggaacgt agccattttc ttggagtaag
     2581 ttctgaagca tctcacgccc ttttgaaaca gacaattcct tgtcctgatt cttgaagaac
     2641 tgcttgattt tattgcgagc cttgtgagtt ttaaccaagt tgacccagtc acgacttgga
     2701 ccgaaagagt tggcagaggt gatgatttcc acctgatcgc ctgtcttaag cttggtcgtc
     2761 aaaggcacca tacggccgtt gaccttggca cctgttgctc gctcgccgac cttggtatga
     2821 atttcatagg cgaaatcaat cggtacagaa tcctttggca actcacgcac agcaccatct
     2881 ggcgtgaaaa cgtaaatacg ttctgtaaaa atatcgtcct tgacagaatt tacaaaggtt
     2941 tgcgcatccc cagccccttc ttggagttca atcaggttgt taatccagcg caactctttt
     3001 tcgctggcag ttgccttgcc accacgcttg taagcccagt gagctgccac cccgtattcc
     3061 gccacctgat gcatttccat ggtccgaatt tggaactcga ttggacctct cggtccgtaa
     3121 accgtggtat gaatagactg gtagccgtta gctttttggt tggcaatgta gtccttgaag
     3181 cgacctggca taggtttcca caattcatga atatacccta acatagcata gacatcgctt
     3241 ggagtatcca tgatacaacg aatggcaatc aagtcataga gttgatcaaa ccgctttttc
     3301 ttatcgtgca ttttgcgata gatagagtaa atatgcttgg gtctaccgta aatctgacca
     3361 tgtagatggc gctcttctgt ataatctctt agcttatcaa caacttcatt gaccaactct
     3421 tcccgttcac ggcgcttctc attcatcatg cgcgtaatct tgtagaactc aacttcattg
     3481 agatagcgga aagacatgtc ttccaattcc cacttgatag aagaaatacc tagacggtgg
     3541 gcaagcggtg catagatttc cattgtttca cgtgaaatac gttcctgctt gtccttgcgc
     3601 aagtgcttaa gagtccgcat gttgtgaagg cggtctgcca gtttaaccag aatgacccgc
     3661 atgtcttggg acatggctat cagcatgttg cggtggtttt cagccaactg ctcctcatga
     3721 gacttatact caaccttacc cagtttggtc acaccgccga caatatggcg aacctctgga
     3781 ccaaattcag cctccatatc atccaaagtt acatccgtat cttcaaccac atcatgtaag
     3841 aaaccacagg caaccgtcac agcatccagc ttgagtcctg ctaaaatacc tgctacctgg
     3901 atcgggtgta caatataggg ttcgcccgat ttacgaaatt gtagcttatg agcttccgtc
     3961 gcaaaatcca aggccttctg aacaaaagca acatcttcgg ctggaaggta ggtggcagtc
     4021 agcccaacaa cctcttctcc tgtaaaattg atttccttca tttgtttctc tccctaacta
     4081 tttcctatta ttttaccatt ttcactggaa aagaaaaagg aaagcggtaa ttca
//
LOCUS       DASGCC010000140         4059 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.141, whole genome shotgun sequence.
ACCESSION   DASGCC010000140 DASGCC010000000
VERSION     DASGCC010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4059
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.141"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            378..887
                     /locus_tag="U1404_001746"
     CDS             378..887
                     /locus_tag="U1404_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348664.1"
                     /translation="MLKYIRALPLVIVAGAVVYFTIFICIDNGDWTYVVTRALGLKEE
                     HANNVSLIVIGTQSLFLTSDWFYKRIRAFLNRRLEKAKGLNRQIYLGYKAGIEFLMAL
                     PKRTILFTFYLLLVVAESVGLIEKAKDYAAVIIFIIAVDRVTKIWPEEKRRMIEFSQK
                     IKKRIKSVG"
     gene            1310..2587
                     /locus_tag="U1404_001747"
     CDS             1310..2587
                     /locus_tag="U1404_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEM5348665.1"
                     /translation="MSTKANLLFDVHEKPAPLQGILLSFQHVFAMFGATILVPLILGM
                     PVSVALFASGVGTLIYQVATQFKVPVYLGSSFAYISAMALAIKEMGGDVSAAQTGILF
                     VGLIYVLIAALVKVIGTKWIDSLLPPIVIGPMIIVIGLGLANSAVTSAGFVADGDWKN
                     VVVAIATFLIAAFVNTKGKGFAKIVPFLIAIIGGYVIAIFLGLVNFTPVLEAAWFELP
                     GFYLPFETGAFKSYNFYFGPEMIAILPIAVVTVAEHIGDHTVLSQICGRQFLKDPGLS
                     RTLIGDGVATAVSAFIGGPANTTYGENTGVIGMTRIASVSVIRNAALIAIAFSFLGKF
                     TALISTIPSAVLGGMSILLYGVIASNGLKVLIESRVDFGQVRNLIIASSMLVLGLGGA
                     VLNIGAITLSGTALSAIVGIILNLILPKAEKAE"
     gene            2802..3230
                     /locus_tag="U1404_001748"
     CDS             2802..3230
                     /locus_tag="U1404_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348666.1"
                     /translation="MKGEDSHENEIIYKKPIIVAIALLGLVSPTVFSRGVLDYSMVLP
                     RIGSTTTGSIVKVTHSRGVNRNDSTGGGKTLNTSIRNYHSGSDITPTYSLPSGARVLM
                     SYHGSGSHYVNETTTLGLATQFGNTVRVQATGSWSPDEEQ"
     gene            3315..>4059
                     /locus_tag="U1404_001749"
     CDS             3315..>4059
                     /locus_tag="U1404_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000394067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348667.1"
                     /translation="MKFLLMNVRRTVFSKKMLLSFLLAFSCILIGNMVAFNGIYKLEG
                     LSLFFAGSTIRGFSPISLVAAVISAIPIADRVIEDSKNHFLRLQLQRTSRIKYIWTLL
                     VTAGISGFLSLFLPYFLLLVANLCLTPYKEIYIGDYQGVFKSIFDSNQLVYSILITIW
                     YGIFGSVFAVFGLASSLAFRQKIVGVFFPCLYMILGGLFFALLDLSFLEPVGIISWGY
                     QFQLNFLLVFLHLLCIFTICLGMILYHFQF"
BASE COUNT         1085 a          728 c          887 g         1359 t
ORIGIN      
        1 attggaagtc ttcttctttt tggggtaagt aaaaaatgct aagggtgtac agttgtcgta
       61 cctgaaattc tagcccctgc ttgaccgtac ttggtataac atattacaat atatacaaga
      121 acctgtgttc acagttcatc gctttcattg gagtgtttga aggtggagat aaggaaagga
      181 gattcctgac aaattaggtg gtaggcgaaa actgccacag gagcttttta ctcgtcgaag
      241 caataaagtg aaactaaatg gtgatagagt caagtattcc ttcaaaaaat tgccttgatg
      301 agcaaaaacg atttcttgca taagaacact ttgtttatga atataggttc taagatttga
      361 ccaagagagg ttattatatg ttgaaatata tccgtgccct tccccttgtt atagtagcgg
      421 gagcggttgt ttactttact atttttatct gtattgataa tggtgattgg acctatgttg
      481 tgactagagc gctagggctt aaggaagaac atgccaataa tgtttctctg attgtaattg
      541 gtacccaatc actttttcta acttcggatt ggttttacaa gcggattcgt gcctttctca
      601 atcgtcgttt ggaaaaggcc aaagggctta atcggcagat ttatctgggc tataaggcag
      661 ggattgagtt tttgatggcg ttacccaaac gaactatttt attcacattc tatctacttt
      721 tagtagttgc tgaaagtgtt ggtctgattg aaaaagccaa ggactatgct gcggtaatca
      781 tcttcataat tgctgttgac cgcgtgacca aaatctggcc ggaggaaaag cggagaatga
      841 ttgagtttag ccagaagatt aagaaacgga ttaagagtgt gggataagtc aagattaaat
      901 attttaagaa gacagctatg tcttcttttt ttgttaaaaa aaccaaacaa aatgcaatat
      961 atatattaca aaatagaaaa tatagtgtgt aataaaatta taaaaatgca caggaagatg
     1021 gctatggcat gaaaaatctt cgtttaaagt tagcgcgtgt ggaaaaagag ttggaagaag
     1081 aaatggagta ataataagca gttcagcttc ctgctctgcc attttcctaa aaaataaaat
     1141 tttacaaaat tccttgccaa aagtaagggc ttatgttaca ataccaaaag cgtaggtttt
     1201 taaactcatc ccgtgaggtg agaaagacaa caggataatt cattaagggc ctatgactat
     1261 gtatatttag aaagtctggg tctttttgtg tacccagaat gggagattta tgagtacaaa
     1321 agccaatctt ttgtttgatg tccatgagaa accagcaccg cttcaaggga ttttgttgag
     1381 tttccagcac gtgttcgcta tgtttggtgc gacgattttg gtgccactga ttctcggtat
     1441 gcctgtatcg gttgccctct tcgcatcagg tgttgggacc ttgatttatc aagtggcaac
     1501 ccagtttaaa gttccagttt acctgggttc atcctttgcc tacatttctg ctatggcgct
     1561 tgctatcaag gaaatgggtg gtgatgtgtc ggcagctcag actggtattc tcttcgtcgg
     1621 cttgatttac gtgttgatcg ctgcacttgt caaagttatc ggtactaagt ggattgacag
     1681 cctcttgcca ccgattgtca tcggtccaat gattatcgtc atcggtctgg gtcttgccaa
     1741 ctctgccgtg acttcagcag gcttcgtcgc agacggcgac tggaaaaacg tcgtcgtggc
     1801 gattgcgacc ttcttgattg cggcttttgt caataccaaa gggaaaggct tcgccaagat
     1861 tgttcctttc ttgattgcca ttatcggtgg ttatgtgatt gccatcttcc ttggcctggt
     1921 taactttaca cccgttctgg aagcggcttg gtttgaatta ccaggtttct acctaccatt
     1981 tgaaacaggt gccttcaagt cgtacaattt ctacttcggt ccagaaatga ttgctatctt
     2041 accaattgct gttgtaacag tagctgagca tatcggtgac cacaccgttc tcagccaaat
     2101 ctgcggccgc cagttcttga aagatccagg cctcagccgt accttgattg gagatggtgt
     2161 agcgactgct gtatctgcct ttatcggtgg accagccaat acgacctacg gtgaaaatac
     2221 aggggttatc ggtatgactc gcatcgcatc agtatccgtt atccgcaatg cagccttgat
     2281 tgccattgcc ttctcattct tgggtaaatt tacagccctt atctcaacta ttccaagtgc
     2341 cgttcttggt ggtatgtcta tcttacttta cggtgttatc gcctcaaacg gtttgaaagt
     2401 tttgattgaa agccgtgttg actttggtca agttcgcaac ctgattattg caagctcaat
     2461 gctggtattg ggccttggtg gagcagttct caacatcggt gccatcaccc tttcaggtac
     2521 agccctctca gccattgtag gtattatcct caatcttatc ttgccaaaag cggaaaaggc
     2581 tgagtaaaat tgaaaataac agcaagtcag ccccggctgg ctttttttga tggtgtagag
     2641 gagattgggg tgaaataatt agttttcgag gagtgtgaaa ggtttagttg tttaattctc
     2701 ctgtcatatt tcctaagttt atttaattat aaccttgata ttttttacca tacttgatat
     2761 aatttacata tcaatataaa caacttcctt ataaggtttt catgaaagga gaagattcac
     2821 atgaaaacga gattatctat aaaaagccaa ttatcgtagc aatagcatta ttgggattag
     2881 tttctccgac ggttttttca agaggagtac tagattattc catggtctta ccacgtatag
     2941 gatctacaac aaccggtagc atagtcaagg tgactcattc gcgaggagtg aatcgcaatg
     3001 attctacagg tggtggaaag actttaaata cctcaatacg aaattaccac agcggtagtg
     3061 atataactcc gacctattct cttccatctg gtgctagggt tctcatgtct tatcatggaa
     3121 gtggtagtca ttatgtcaat gaaacgacta ctttgggatt agctactcaa ttcggaaata
     3181 cagttagagt acaagcgact ggcagttgga gtccagatga agaacagtga ttagtaatga
     3241 gctaggaagt tgtttattga gactattgag ctagtggaat ttattcacct agctcttttt
     3301 actaggaggt aaaaatgaaa tttttactaa tgaatgttag aagaactgtt ttctctaaaa
     3361 agatgctttt gtcttttctc ttggcatttt cctgcatttt gatagggaat atggttgctt
     3421 ttaatggcat atacaaactt gaaggattgt ccctgttttt tgcaggatcg actatcaggg
     3481 gtttttcgcc gataagcctt gtggcagcag ttatcagtgc gattccgata gctgatcggg
     3541 ttattgagga tagtaagaat cactttctgc gcctgcaatt acaaagaaca tcccgtataa
     3601 aatatatttg gactcttctt gtgacggcag gaatttcagg atttttgtcc ctttttttac
     3661 cctatttcct gcttttggtt gcaaatctat gtctgacgcc atataaggaa atatatattg
     3721 gtgactatca aggtgttttt aagtctattt ttgatagtaa tcagttagtt tattctatct
     3781 taataacgat atggtatggg atttttggta gcgtttttgc agtatttggc ctagctagtt
     3841 ctcttgcttt tcgtcaaaaa attgttgggg tatttttccc ttgcctctat atgattttgg
     3901 gcgggttgtt ttttgccttg ctagatttgt cttttttaga gcctgttggg attatttctt
     3961 ggggttacca gtttcaatta aattttctac ttgtattttt gcatctactg tgtattttta
     4021 ccatctgtct tggaatgatt ttatatcatt ttcagttcc
//
LOCUS       DASGCC010000141         4046 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.142, whole genome shotgun sequence.
ACCESSION   DASGCC010000141 DASGCC010000000
VERSION     DASGCC010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4046
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.142"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..846)
                     /locus_tag="U1404_001750"
     CDS             complement(<1..846)
                     /locus_tag="U1404_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HEM5348668.1"
                     /translation="MEKQTFITLEDIDTSIAAENFNRLLDENKTYFLNGSWGSGKTTF
                     LESTESQSKKKFVTIDLWRNTDKRSLVEVAYASLHPVLYWGALLFSFLFVIISILMTN
                     TVNLGLSKFLHPIWMLPVGFISLVVAAVQLVAIKTEIVYSWLLANLCLKNKVLVIDDF
                     DRLTLSQQEEAYRLFSLLRGRLPIVFVGDIENIYSVKDNFLSKIIDRRVELPFVLQSE
                     QIWDDYFIKLEQRFATEISDSFKKRVKVEKRSLRDREHFNDYVNQEFFSRGKLGHVQV
                     EEQLLV"
     gene            complement(989..1726)
                     /locus_tag="U1404_001751"
     CDS             complement(989..1726)
                     /locus_tag="U1404_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348669.1"
                     /translation="MNETRFLELFNDLDKVLRKVCGVADGEYADVGSMLTKAKELTRH
                     NPVEANWDKLYVARQLRNLMVHEKRTGLKEVAQPSQELITVLEKVIAQYQEPITIADY
                     LQKTQKIKPVIFEGKDKLIKALEIVEQEHFSKFPIFSDKVYQGLVSDKGLTNWLAKAS
                     KETGSIREKLVEASLEDVLACEEDSIQVIVLPITAHLYQVINHFEGRKRTTILVSRQA
                     SGKLHSPEDLVGIVTAQDLAEIYGMVD"
     gene            complement(1728..2762)
                     /locus_tag="U1404_001752"
     CDS             complement(1728..2762)
                     /locus_tag="U1404_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM5348670.1"
                     /translation="MKTLDYIVTLTNTPSPTGFTTDIMNYIKAEVESFGYAASKTAKG
                     GVLVTVPGENDQEHRMVTAHLDTLGAMVRAVKPDGRLKMDLVGGFGYPSIEGENCLIH
                     CAKNGKTFTGTILMHQTSVHVYRDASTAERNQTNMEIRLDEKVTNADETRTLGIEVGD
                     FISFDPRTVVTETGFIKSRHLDDKVSAAILLHLLKVYKEEGVTLPYTTHFYFSNNEEI
                     GYGANSSIPAQVVEYLAVDMGAMGDDQQTDEYTVSICVKDGSGPYHYELRQHLVALAE
                     RDGIPYKLDIYPYYGSDASAAMRAGADVKHALLGAGIESSHSYERTHLDSVVATERMV
                     DAYLKSAMVD"
     gene            2827..3783
                     /locus_tag="U1404_001753"
     CDS             2827..3783
                     /locus_tag="U1404_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     synthetase/biotin operon repressor"
                     /protein_id="HEM5348671.1"
                     /translation="MKTYQKIYLLLKEREDYVSGEDLAQELGISRTSIWKAIRQLETH
                     GLTIEAARNRGYRLAEGDLLLPELISQELQLPVHLNMDSDSTQLDAKQGIESGHTSPA
                     LYLAPYQNKAKGRFGRPFYASKSGGIYMSLRLSPNVPFLEFKPYTILAAAAVVKAIQS
                     LCDLDVQIKWVNDIYLGHKKVAGILTEAISSMENQRVTDVIIGVGINVRIDDFPKELQ
                     QSAGNLFEEQPPFTRNQLITAIWKAFLETDEKELIALYKEKSLVVGQQVSFVENQVEF
                     KGTAIAVTDTGNLVIQLDNGKAKIISSGEISLTSWSASPPNE"
     gene            complement(3749..3937)
                     /locus_tag="U1404_001754"
     CDS             complement(3749..3937)
                     /locus_tag="U1404_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3272 domain-containing protein"
                     /protein_id="HEM5348672.1"
                     /translation="MKLPQFLFLAITTILAVYFMNASILTGDFLIAGIYAFIAYRNLH
                     FAYKVTKFIRLVEKQTKK"
BASE COUNT         1222 a          924 c          714 g         1186 t
ORIGIN      
        1 gactaataat tgttcctcta cctgaacatg cccaagtttt cctctggaaa aaaattcttg
       61 gttaacatag tcattgaaat gctctctatc ccttagactt ctcttttcta cctttactct
      121 ttttttgaaa ctatcagaaa tttcagtggc aaatctttgt tctaacttta taaaataatc
      181 atcccaaatc tgttcagatt gaaggacaaa cggcaactct accctcctat caataatttt
      241 tgatagaaaa ttatctttta cactataaat attctcgata tcaccaacaa agactatagg
      301 caacctccct cttaacaagg aaaataatct atatgcttcc tcctgttgtg agagcgttaa
      361 acggtcaaag tcgtcaatca ctagaacttt attttttaag cacaaattag ccaataacca
      421 agaataaact atttctgtct ttatcgctac taattgcacc gccgcaacta ctagggaaat
      481 aaacccaaca gggagcatcc atatggggtg taaaaattta cttaatccta gatttactgt
      541 attggtcatt aaaatagaga tgattacaaa aagaaaactg aatagtaatg ctccccagta
      601 taaaacagga tgtaaactgg cataagcaac ttcaacaaga cttcttttgt cagtatttct
      661 ccataaatca atagtaacga acttcttttt tgattgcgac tctgttgatt ctaaaaacgt
      721 tgtttttcct gatccccacg aaccattcaa aaagtatgtt ttattttcat ccaaaagtct
      781 attaaaattt tctgctgcaa tagaggtatc aatatcttct aaagtgataa aagtttgttt
      841 ttccatattt tttcctaaaa aatatttata ttgtgacaat gtagaattgg gactcctaaa
      901 tatcttttat ttacgagttt cacaacatat tcaagtcttt ttcaacacag taatacacct
      961 tgataatgga ttaacaagaa ctattgcttc aatccaccat cccataaatc tctgccaagt
     1021 cctgggctgt gacaatacca acaagatcct ctggcgaatg aagcttccca ctcgcctgac
     1081 gactgactag gatagttgtg cgcttacgcc cctcaaaatg attaattacc tgataaagat
     1141 gggctgttat tggtagaaca attacctgaa tactatcttc ctcacaagct agtacgtctt
     1201 caagactagc ctccaccaat ttttcacgta tagagcccgt ttccttgctt gccttggcca
     1261 accaatttgt caatcccttg tcagaaacca ggccttgata aaccttgtca gaaaaaatag
     1321 gaaatttaga aaaatgctct tgctccacaa tttctaaagc ctttatcaat ttgtccttgc
     1381 cctcaaaaat aaccggctta attttctggg tcttttgcaa atagtcggca atagtaatcg
     1441 gttcttggta ctgggctatc actttttcca aaacagtgat caattcctgc gaaggttggg
     1501 ctacttcctt caaacctgtt cgtttctcat gaaccatgag attacgcaac tgacgagcca
     1561 catagagttt atcccagttc gcctcaacgg gattatgtcg cgtcaattcc tttgccttgg
     1621 tcaacatgga accaacgtcc gcatattccc catccgcaac accgcacacc ttacgcaaga
     1681 ccttatccaa gtcattgaat aactctaaaa aacgggtttc attcatctta atctaccatt
     1741 gctgatttca aataggcatc taccatccgc tcagtcgcaa ctacagaatc caaatgggtc
     1801 cgctcgtagg aatggctaga ctcaatgcca gcaccaagca gtgcatgctt gacatctgca
     1861 cctgctcgca tagctgccga agcatcggaa ccatagtaag gataaatatc cagcttataa
     1921 ggaattccat ctctttcagc caaggctacc aagtgctgac gaagttcata atggtaggga
     1981 cctgagccgt ccttgacaca gatagaaact gtatattcgt cagtttgctg gtcatctccc
     2041 attgccccca tatcgactgc caaatattca accacctgag caggaatgct ggagttggca
     2101 ccgtagccaa tctcttcgtt gtttgaaaaa tagaaatgtg tcgtataagg cagggtcact
     2161 ccttcttcct tatagacctt caaaagatga agcaagatag ctgcggatac cttatcatcc
     2221 aagtgacgac tcttgataaa gccagtttct gtcacgacgg tacgaggatc aaaggagata
     2281 aaatctccga cttcaatacc caaggtccgc gtctcgtccg cattggtcac tttttcgtcc
     2341 aaacgaattt ccatgttggt ctgattgcgc tcagcggtac tggcatcccg atagacatgg
     2401 acagaggtct ggtgcatgag aatagtacct gtgaaagtct tgccattttt agcgcaatga
     2461 attaagcagt tttctccctc aatagaaggg tatccaaatc ctcccaccaa atccatttta
     2521 agtcggccat ctggtttcac tgcacgaacc atggccccca gtgtgtctag gtgagcagtc
     2581 accatgcggt gttcctggtc attttccccc ggaactgtca ccaaaacacc acctttagcg
     2641 gtcttactag cagcatagcc gaaactttca acctctgcct tgatgtaatt cataatatcc
     2701 gtcgtaaaac cagttggcga cggagtgttg gtcaatgtaa caatgtaatc aagtgtcttc
     2761 atgaaaacct ccttatttga aactattata tcacgtttta ggtgaatttt ttgctataat
     2821 gaaggtatga aaacctatca gaaaatatat ctccttttaa aagagagaga ggattatgtc
     2881 agcggagaag atttggcaca ggaattgggc atttcacgga catccatttg gaaggccatt
     2941 cgccagttag aaacgcatgg tttaactatt gaggctgccc gtaatcgtgg ctacagatta
     3001 gccgaaggcg atttactcct acccgaatta atctctcagg agcttcaact acctgtccat
     3061 ctgaatatgg atagcgattc cacccaacta gatgccaaac aaggtattga atcaggtcat
     3121 actagtcctg ccctatattt agctccctat cagaataaag ccaaggggcg atttgggaga
     3181 cctttttatg catccaagtc aggtggcatt tatatgtcgc ttcgtctctc tcccaatgtt
     3241 ccctttctag aatttaagcc ctacaccatt ttagctgcag ctgctgttgt gaaggccatt
     3301 caatctcttt gcgacttgga cgtccaaatc aagtgggtca atgacatcta tctcggacac
     3361 aaaaaggtcg ctggcatcct cactgaggct atttcttcta tggaaaacca acgggtaacc
     3421 gatgtcatta tcggtgtcgg catcaatgtc cgcatagacg atttccctaa ggaattacaa
     3481 caatctgctg gaaacctttt cgaggaacaa ccaccattta cccgcaatca actcattact
     3541 gccatctgga aagccttctt agaaaccgat gagaaggaac taattgccct ttacaaagaa
     3601 aaatcacttg tcgttggcca acaagtgagc tttgtagaaa atcaagttga atttaagggg
     3661 actgccatcg ctgttactga tacaggaaac ctggttatcc agttagataa cggcaaagca
     3721 aaaattatct ccagcggaga aatcagcctt acttcttggt ctgcttctcc accaaacgaa
     3781 taaatttagt caccttgtaa gcaaaatgaa gattccgata ggcgataaag gcgtagatac
     3841 ctgcaatcaa gaaatctcct gtcaaaatcg atgcattcat aaaataaaca gctaaaatag
     3901 ttgtaatggc taaaaaaaga aattgtggaa gtttcataaa atagattata ccaaaaattc
     3961 agtcaactgg ctgaattttt atatgctttc ttgataggtt tcgattcttt tctaaacaag
     4021 aaaacaccaa tctaattggg tgcttt
//
LOCUS       DASGCC010000142         3735 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.143, whole genome shotgun sequence.
ACCESSION   DASGCC010000142 DASGCC010000000
VERSION     DASGCC010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.143"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(22..252)
                     /locus_tag="U1404_001755"
     CDS             complement(22..252)
                     /locus_tag="U1404_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005592360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1797 family protein"
                     /protein_id="HEM5348673.1"
                     /translation="MESHLVRIINRLEAMANDGGTLKRNFERDGIVVAEVAYSYDEEN
                     GSVFTLRDVAARETYAFDSIDLIAMEIYELLY"
     gene            476..2704
                     /locus_tag="U1404_001756"
     CDS             476..2704
                     /locus_tag="U1404_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5348674.1"
                     /translation="MLCKNCNINDATIHLYTNLNGKQQQVDLCHNCYQIMKTDPNNAI
                     LRGLGDLTNPNNMDPFSEFFNHLGGYPGNTPAGKNREQTPPTQAGEHNGRGGQTPPPQ
                     QPQQPNGLLEEFGINVTEIARRGDIDPVIGRDQEITRVIEILNRRTKNNPVLIGEPGV
                     GKTAVVEGLAQKIVAGDVPQKLRDKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRN
                     RREIILFIDEIHEIVGAGSAGDGNMDAGNILKPALARGEMQLVGATTLNEYRIIEKDA
                     ALERRMQPVKVEEPSVEETITILKGIQNKYQDYHHVKYSDAAIEAAAVLSNRYIQDRF
                     LPDKAIDLLDEAGSKMNLTLNFIDPKEIDQRLIDAENRKAQATRDEDYEKAAYFRDQI
                     AKYKEMQKATISEEDIPLITEKEIEAIVEQKTNIPVGDLKEKEQSQLVNLASDLKAHV
                     IGQDEAVDKIAKAIRRNRVGLGAPNRPIGSFLFVGPTGVGKTELSKQLAIKLFGSADS
                     MIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPDV
                     MHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAMEGRTQSVLG
                     QLSNFFTPEFMNRFDGIIEFQPLSKENLLEIVSLMLDDVNKRLSHNGISLHVTDKVKE
                     KLVDLGYDPKMGARPLRRTIQDQIEDAITDFYLEHPAEKDLRAVMSSKGTIQIKAQTK
                     TK"
     gene            2890..3351
                     /locus_tag="U1404_001757"
     CDS             2890..3351
                     /locus_tag="U1404_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5348675.1"
                     /translation="MEKIAVFGEKKAGVSYQSRFGVYAVIPDEKKEQIILVQAPNGAW
                     FLPGGEIEKGENHLIALERELMEELGFTAEIGKYFGQADEYFYSSHRDTHFYNPAYIY
                     EVTSYHQIGQPLEDFNHIAWFPVNEAIDKLKRGSHKWGIEQWKLQENSFNN"
     gene            3406..3714
                     /locus_tag="U1404_001758"
     CDS             3406..3714
                     /locus_tag="U1404_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1827 family protein"
                     /protein_id="HEM5348676.1"
                     /translation="MKIINTTNSHPNLVQSQLANTDAFLVETYSAGNTDVIFTQAPRH
                     YELLISNKYRAVQQNEIEQIRDFFLHRKIDERTINKAAIQTIHTDRLIEMSILIIAEV
                     "
BASE COUNT         1200 a          845 c          725 g          965 t
ORIGIN      
        1 ttaggtgcct ctcacttctt cttagtacaa tagctcatag atttccattg caatcaagtc
       61 gatgctgtca aacgcgtacg tttcacgagc agcaacatca cgcaaggtaa atactgaacc
      121 gttttcctcg tcatagctat aagccacttc tgcaacaaca ataccatcac gttcgaaatt
      181 acgtttcaac gtaccgccgt cattagccat agcttccaga cgattgataa ttctcaccaa
      241 atgtgattcc atattcgttc tcctaatcct ttttatagga atattttacc acatattgcc
      301 aaaaaagtct tattttttcc ctattttctt cctatcgccc tatttttcat agaaagtttt
      361 tccaagcgta gcagtttctt gatttttcta tgaatcttgt tataataaag ctagaactga
      421 ccttttttga ctatttaaca ataggtcaca ttttttcaca gaaagaggta gaattatgct
      481 ctgcaaaaat tgtaatatca acgacgcaac gatccatctc tacaccaact taaacggtaa
      541 acagcagcag gtagacctct gtcacaactg ctaccaaatc atgaaaacag accctaataa
      601 tgccatccta cgtgggttgg gagatttaac aaatcctaac aacatggatc cctttagtga
      661 atttttcaat cacctaggtg gctatcctgg caatacccct gctggaaaaa atcgcgaaca
      721 gactcctcct actcaagccg gtgagcataa tggacgtggt ggacagaccc ctcctccgca
      781 acaaccccaa caaccaaatg ggctccttga agaatttggt atcaacgtta ccgaaattgc
      841 ccgtcgtggg gatattgatc cagtaatcgg tcgcgatcaa gaaattaccc gtgtcatcga
      901 aattctcaac cgtcgtacaa aaaacaaccc tgttcttatc ggtgagcctg gtgtaggtaa
      961 aacagcggtt gttgaaggct tggctcaaaa aattgtcgct ggcgatgtcc cacagaaatt
     1021 acgagacaag gaagtcattc gtctggatgt tgtcagcctc gtacaaggaa caggtatccg
     1081 tggacaattt gaagaacgca tgcaaaaact catggaagaa atccgtaatc gtcgcgaaat
     1141 cattcttttt attgacgaga ttcacgaaat tgtcggtgct ggctctgcag gcgatggtaa
     1201 catggatgca ggcaatatcc tcaaaccagc cctcgcacgt ggtgaaatgc aactagtcgg
     1261 tgcaacaacg ctcaacgagt accgtattat cgaaaaagat gccgccctag aacgccgtat
     1321 gcaacctgta aaagttgaag aaccaagtgt cgaagaaacc attaccattc tcaaaggtat
     1381 ccaaaataaa taccaggatt accatcatgt taaatactcc gatgctgcta tcgaagctgc
     1441 cgcagtactg tccaaccgct acattcaaga ccgtttccta ccagacaaag ctattgacct
     1501 tctggatgaa gctggttcaa aaatgaattt aaccctcaac tttattgatc caaaggaaat
     1561 tgaccaacgc ctgattgatg ccgaaaatcg gaaagcacaa gctacacggg atgaggacta
     1621 tgaaaaagcg gcctatttcc gtgaccaaat tgctaagtac aaggagatgc aaaaggcaac
     1681 tatcagcgag gaagatattc cactcattac tgaaaaagaa attgaggcca tcgttgagca
     1741 aaaaacaaat atcccagttg gtgatttaaa agaaaaggaa cagtcccagc ttgtgaacct
     1801 cgctagtgac ttaaaagccc atgttatcgg acaagatgaa gcagttgaca agatagctaa
     1861 agccatccgc cgtaatcgtg tcggtctcgg tgctccaaat cgtcccattg gatccttcct
     1921 ctttgtcgga ccaacaggtg tcggtaaaac cgaattgtct aaacaattag ctatcaaact
     1981 cttcggttcg gcagacagca tgatccgctt cgacatgtcc gaatacatgg aaaaacacgc
     2041 tgtcgctaaa ctcgtcggag ctcctccagg ctatgtaggc tatgaggagg ctggacaatt
     2101 gacagaaaaa gtccgtcgta atccttactc actcatcctc cttgacgaag ttgaaaaagc
     2161 ccacccagat gtcatgcaca tgttccttca ggtcttagac gatggtcgtc tgacagatgg
     2221 acaaggtcgg acagtcagct tcaaagatac tattatcatc atgacatcaa atgctggtac
     2281 tggaaaagtt gaagcaagtg tcggttttgg tgcggctatg gaagggcgga ctcaatcagt
     2341 ccttggccaa cttagcaatt tcttcacacc tgaatttatg aaccgatttg acggtattat
     2401 tgagttccaa ccactgagca aggaaaacct acttgaaatc gtcagcctca tgctagacga
     2461 tgtaaacaaa cgcctttctc acaatggcat cagcctccat gtaacagata aagttaagga
     2521 gaaattagtg gaccttggct acgatccaaa gatgggagct cgtccactgc gcagaaccat
     2581 ccaagatcag attgaagatg ctatcaccga cttctactta gaacatccag cagaaaaaga
     2641 cctacgtgct gtcatgtcaa gtaaaggtac aattcaaatc aaggcacaaa caaagacaaa
     2701 ataagaaaat agagctgctc cctacgagta gcctatttta ctgttttgct actctatttt
     2761 tctaaattct tccccatctc catcctataa aaaaacttta ctttgtaaag cctatcacaa
     2821 ggaaaaataa taaaaaagtg gtataatgta tacaactcat tccaataatg aaagaggata
     2881 gaattgccta tggagaaaat tgctgtattt ggagaaaaga aggctggcgt cagctaccag
     2941 agtcgctttg gtgtttacgc agttatccca gatgaaaaaa aagaacagat tatactcgtt
     3001 caagcaccaa acggagcttg gtttcttcct ggtggagaaa ttgaaaaggg agaaaatcac
     3061 cttattgctt tggagcgcga attgatggaa gagcttggat tcaccgctga aatcggaaaa
     3121 tactttggtc aggctgacga atacttctac tctagccacc gcgataccca tttctataat
     3181 ccagcctaca tctatgaagt gactagctac catcaaatag gacaaccact agaagatttc
     3241 aaccatattg cttggttccc agtcaatgaa gccatcgata aactcaaacg tggtagtcac
     3301 aaatggggca ttgaacaatg gaaattgcaa gaaaattcat tcaataacta gtaaaaacac
     3361 tctaatcgtg ctataatgta gccaaagaga tagaggaggt tccacatgaa aatcattaac
     3421 acgacaaata gtcatcccaa tcttgtccaa agccagttgg ctaatactga tgctttccta
     3481 gtagagactt attctgcagg taatacagac gttattttca cacaggcacc ccgtcattat
     3541 gaactcttga ttagtaataa ataccgtgca gtacaacaaa atgaaatcga gcaaattcgt
     3601 gatttcttcc ttcatcggaa aattgatgaa cgaactatta acaaggctgc cattcaaacg
     3661 attcacacag accgtttgat tgaaatgtct attctcatta tcgcagaagt gtaagaagcc
     3721 agatggcttc tttca
//
LOCUS       DASGCC010000143         3638 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.144, whole genome shotgun sequence.
ACCESSION   DASGCC010000143 DASGCC010000000
VERSION     DASGCC010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.144"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            531..716
                     /locus_tag="U1404_001759"
     CDS             531..716
                     /locus_tag="U1404_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348677.1"
                     /translation="MSQPIVPLTIPQSHRFEKKSRNDILMKIRLGKTEVTFFQSINPE
                     VMETILDKVLYYDHPTQ"
     gene            697..1047
                     /gene="tnpB"
                     /locus_tag="U1404_001760"
     CDS             697..1047
                     /gene="tnpB"
                     /locus_tag="U1404_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HEM5348678.1"
                     /translation="MTIRLSDLGQVFLVCGKTDMRQGIDSLAYLVQSQFNLDPFSGQV
                     YLFCGGRKDRFKALYWDGQGFWLLYKRFENGKLTWPNNEEEVKALTSEQVDWLMKGFS
                     IIPKINVSKSRDFY"
     gene            1099..1283
                     /locus_tag="U1404_001761"
                     /pseudo
     CDS             1099..1283
                     /locus_tag="U1404_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941576.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1258..2010
                     /locus_tag="U1404_001762"
     CDS             1258..2010
                     /locus_tag="U1404_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000431172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5348679.1"
                     /translation="MGRKTSLNKKLTYPVETETITYKRKKTKGVRQAIFSQFTPEIIH
                     HELQGEDCTCPDCHGQLKEIGSTVQRQELVFIPAQLKRIDHVQHAYKCQACSQKNLSD
                     KIIKASVPKAPLAHSLGSASIIAHTIHQKFNLKVPNYRQEEDWNKLGLPISRKEIANW
                     HIKSSQYYFEPIYDLLHEKLLEQPILHADETSYKVLENDSRLTYYWTFLSGKHEKKGI
                     TLYHHDKRRSGLVVEEVLGDYAGYVHCDMLRQ"
     gene            2086..2709
                     /locus_tag="U1404_001763"
                     /pseudo
     CDS             2086..2709
                     /locus_tag="U1404_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941577.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(2921..>3638)
                     /locus_tag="U1404_001764"
     CDS             complement(2921..>3638)
                     /locus_tag="U1404_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM5348680.1"
                     /translation="INYVITDEERKVKMVMVDKNSLALISVNDPELMISKPQALTAAT
                     GMDALTHAVEALVTPGAYDVTKKLSIGAIELIKEYLPRAVANGHDIEAREGMVNAIFL
                     GGMSFNNAGLGYVHSMAHQLGAVYNLPHGVCCAMLLPVIERENTKCVPEAFRNVAKAL
                     GLHVEGKSDEECADYAIAEIEKLSETVGIPKKLTELGIEEKDFDFEYLSKNALIDACA
                     PGNPFMPTLEETIEFYKELF"
BASE COUNT         1126 a          751 c          720 g         1041 t
ORIGIN      
        1 tcaaaatgat aggtcaagta gcctttttgt aaaccacttt agtcgcattt ttccaaagat
       61 acctctaaaa taatttccaa gcttctctat caataaattt tcaattaatg aaataatcag
      121 catatgtaat gtcctctctc actaagtata tcataccccc ataggaatac atctactacg
      181 atttttgtat cgctttatca tctcgtaatt aattcattga taaagttttc tcaaaataca
      241 gctgaacccc cttcaacact taatgtaacc gccccataac aaggtatcta tccaatcacc
      301 ccttcctcca gtatactgtt ataaaaaaca aactggagga tttacactca ataaaaatca
      361 aaaatagcat attgaggtca atttctatgt gtaaaatttc aatatctaag ttcagattgg
      421 aaatcataga ttttgattag ccattctctt ttcgaaagct ttaaaattga aattctctat
      481 atacaatttg attagtagat agctaatttt gattttaaat gagcattatt atgtcacagc
      541 ccatcgtccc attgactatt ccccaatctc accgctttga aaagaaaagc agaaacgata
      601 ttctgatgaa aattcgtctc ggaaaaacgg aagtcacatt cttccaatca atcaatcctg
      661 aagtaatgga aacaatcttg gataaggtac tgtattatga ccatccgact cagtgattta
      721 ggtcaagtct tcttggtctg tggaaaaaca gacatgcgtc aggggattga ctctctcgcc
      781 tatcttgtcc aaagccaatt taatctggat cccttttcag gtcaggtcta tctcttctgc
      841 ggcggtcgaa aagaccgatt caaagctctt tactgggacg gacaaggatt ttggttattg
      901 tataaacgtt ttgaaaatgg gaaattgacc tggccaaaca atgaagaaga ggtcaaggct
      961 ctaacttccg aacaagtaga ctggctcatg aaaggatttt ctatcattcc aaaaataaat
     1021 gtttcaaaaa gtcgtgattt ctattgaaac catggctttt ctttgtgtat aatgagataa
     1081 aaagaaggag gtaagtccat ggtggcacaa gataaagtga ttgaaagtct aacaaaaact
     1141 attgaaatcc tgaccaacga gctaaccctc cttcgcgaac aggttaacta tctgagacag
     1201 aaactctacg gaaaatcatc agataaagtt gtatatcaac ccggtggcta agcttgtttg
     1261 gggaggaaaa cctccctgaa taagaagctg acttacccag ttgaaacaga aacgattacc
     1321 tataaacgca agaaaactaa aggagttcgt caggctattt ttagtcaatt cactccagag
     1381 attattcatc acgaattgca gggtgaagac tgcacttgtc cagactgtca tggacagttg
     1441 aaagagattg gttctactgt tcaacgacaa gagttggtct tcattcccgc acaattaaag
     1501 cggattgacc atgttcaaca cgcatacaag tgtcaggcat gtagtcagaa gaatctgagc
     1561 gataagatta tcaaggcttc cgttcctaag gcacctttgg cacacagctt gggttcagcc
     1621 tcaatcatcg cccacaccat tcatcagaaa ttcaatctga aggtacccaa ttatcgtcag
     1681 gaagaggatt ggaacaagct tggcttgcca atcagtcgga aggaaatagc caactggcac
     1741 atcaagtcta gtcagtatta tttcgagccg atttatgacc tgttgcacga gaaattgttg
     1801 gagcagccta ttctccatgc ggatgagacc tcctacaagg tcttagaaaa tgatagccgg
     1861 ttgacctact actggacttt cttgtctggg aagcatgaga aaaagggaat tacgctctat
     1921 catcatgaca aacgacggag tggcttggtt gtggaggagg ttcttgggga ctatgcgggc
     1981 tacgtacatt gtgacatgtt acggcagtaa cttaggactt tagtccttta gttctgccta
     2041 tgcgatagca gtccaaggtt taggagcgaa gcgacactaa gcttggtgaa ctgcgaaccg
     2101 ctgtcagctt atcgtcaatt agataaggct aaactggttg gctgttgggc tcacgtcaaa
     2161 cgaaagttct ttgaggcgac tcctaagaag acagacaaga cttctttagg agctaagggt
     2221 ttagcttatt gcgaccgcct gtttgccttg gagaatgact gggcagactt gtctactgag
     2281 gaacgattac ataaacgcca gacagagttg gcacccttga tggacgagtt ctttgactgg
     2341 tgtcgtgagc aatctgtttt gccaggctcc aaattgggta ctgctttgga gtatagcctc
     2401 aaatacgaaa ccaccttccg aaccgttcta tcggacggtg acttagtctt gtccaataat
     2461 atggctgaga gggcaatgaa gaccttggtg atgggccgta aaaattggct gttttctcag
     2521 agttttgagg gagccaagtc gacagctatc attctgagtc ttttggaaac ggccaagaga
     2581 cacggacttg atgcagagaa atatatgacc tatcttctag aacacttacc taacgaggag
     2641 acgctcgcaa aaaaagaggt gctagaagcc tatttgccat gggataaaaa tattaagaga
     2701 gcatgtaaat tgaaaaaggt tccagagtcg acaggacttt ggaacctttt tcaatatacc
     2761 ttgttattgg gcgcttacca tctgcgtcgc ctagtctgat tttgattttc attgagtatt
     2821 aatttataaa aagattgagc attgtacaat acaaaactca atccattaaa caacttattt
     2881 ccatcttttt aagttagcac acaattaaac tcattatttc ttaaaacaac tctttataaa
     2941 actcaatcgt ttcttctaag gttggcatga atggatttcc tggtgcgcag gcatcaatca
     3001 aggcattctt agaaaggtat tcaaagtcaa aatctttttc ttcaatacca agctcagtca
     3061 atttcttagg aatgcctact gtctcagaaa gcttctcaat ctcagcaatt gcataatcgg
     3121 cacactcttc atctgattta ccttctacat gaagtcccaa ggccttggca acattacgga
     3181 aagcttctgg tacacattta gtattttcac gttctataac tggtaacaac atggcacagc
     3241 aaacaccgtg tggcaaatta tatactgcac cgagttggtg agccattgag tgaacatagc
     3301 ccagacctgc attgttaaag ctcataccac caaggaagat ggcattgacc ataccttcac
     3361 gcgcttcaat atcgtgtcca tttgctacag cacgaggaag gtattccttg ataagctcaa
     3421 ttgctccgat agataatttc ttggtcacat cataagcacc aggtgttacc aaagcttcaa
     3481 cagcgtgagt cagagcatcc ataccagtag cagcagtcaa agcttgaggt tttgaaatca
     3541 tcaattcagg gtcattaaca gagataagag caaggctatt cttgtcaacc attaccatct
     3601 taaccttgcg ttcttcatcg gtaatcacat agttaata
//
LOCUS       DASGCC010000144         3578 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.145, whole genome shotgun sequence.
ACCESSION   DASGCC010000144 DASGCC010000000
VERSION     DASGCC010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.145"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(26..1459)
                     /locus_tag="U1404_001765"
     CDS             complement(26..1459)
                     /locus_tag="U1404_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001082309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HEM5348681.1"
                     /translation="MNQNLSHYQFSPESQYLDRKSARKKPSELLKHLIAFANADGGQL
                     VIGIEDEKQENIITGFKDGRAYPIDDFKKIDREMRETPLDLSFEEIPVINHKGEEDFI
                     LVISVELSSNRVIAAPNDEVYLRQGDETVKLSYEQRTQLSYDKGQRFFEDEVVPDASL
                     EDIDDSLVQDFKNRFDISERSVEEILKARRFLINGKLTKAAILLFGKYPSAFFPQARV
                     RFQRFDGTDMGTGSSFNVIKEVTFDDALPILIIKVRDFIRTQLREFQYLDDSGQFKIL
                     PEYPEFAWFEGVVNAVTHRDYSVYGDHIRVLMFDDRLEIHSPGKLPNIVTVDNIKHER
                     FSRNPRIARTLTEFGWVREMNEGVKRIYSEMESAFLHEPKFSEPGNKVVLTLENNIVS
                     RHLRTRDSLEKQFTDFGDLNADEQLLVHYMYNSGEKMTTAKAIELTGRSRSFVVKMLH
                     HLRDLEIITWFGSSKNDRNQYYLLIDK"
     gene            complement(1504..2661)
                     /locus_tag="U1404_001766"
     CDS             complement(1504..2661)
                     /locus_tag="U1404_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM5348682.1"
                     /translation="MAQEFNGDRLRESRYFRHYSISQLAENVGVSKQMISKYEKNLSK
                     PSSEVLQKIIFELKFPLSFYQTKDKFITTDLGTFYRSKLTSSQTEKKSSEMLKKALAL
                     LANFFEDYVDFPKLAEFESHENASPEEVANQIRKNWGLGDSPISSVLRLLETNGFHIA
                     IINSKSEKVDAFGSFVELKMETDSERYYCILIDQDNNNFFRQQFSLAHELGHWALHAR
                     TVYPQELSNIEYRQMEQEANRFASSFLLPASAFSEDLKGHEEDLAYYLKLKSKWNVSI
                     ASMIYRAKDLGLLNSEQYTRLQKRMSARGWRREEPEDASIPVSRPILAKQAYKLLTDA
                     GLFEKQSIVQQFNLKYGYPLPIEIFSELMDIPKETLLQERNNIVHLKSRTL"
     gene            complement(2661..3371)
                     /locus_tag="U1404_001767"
     CDS             complement(2661..3371)
                     /locus_tag="U1404_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348683.1"
                     /translation="MKYSYDIEREVIIKCLEAMSFTTRHLEQDYKVAISETSQNGIYQ
                     ATWARRSNMLKDLFDNSVVWKVLHIKRGIWQFDPILNIETGELIAFFSKNNFRTIRNR
                     YFKKGTSTHYSLSLLLKNERLYPEQEVEQLSLFDADSSEVKRREADLVRMLGEYCEHV
                     TKIRFLIVDYVGQEAVSASLEDYTPQFLSVSSVDISHLLPSSAGIIRTEAIRDEQVND
                     LVDEPQLVTLKPIVEGIL"
BASE COUNT         1121 a          753 c          553 g         1151 t
ORIGIN      
        1 attactaata gtaccctgac tgtaatcatt tatcaattaa aagataatat tgattgcggt
       61 catttttact tgatccaaac caagtgatga tttctaaatc acgaagatga tgcaacattt
      121 taacaacaaa cgagcgactt cttcccgtca gctcaatggc ttttgcggtg gtcatcttct
      181 caccagaatt gtacatatag tgaaccagca attgttcatc agcattgagg tctccaaaat
      241 cagtaaactg tttctccaaa ctatctcgag tccgtaggtg tcggctgaca atattatttt
      301 caagcgtcag gacaacctta ttcccaggtt ctgagaattt aggttcatgg agaaaagcag
      361 attccatctc agaatagata cgctttactc cttcattcat ctcacgtacc caaccgaact
      421 ctgtcaaggt tctggcaatg cgagggtttc gtgaaaaacg ttcatgcttg atattgtcaa
      481 cggtgacgat attgggtaat ttccctgggc tatgaatctc tagtcgatca tcaaacataa
      541 gcacacgaat gtgatcgcca tagacggaat aatcacggtg cgttacagca ttgacaacac
      601 cttcaaacca agcaaattca ggatactcag gtaaaatttt gaattgccca ctgtcatcca
      661 aatactgaaa ttcccgaagc tgggtgcgaa taaaatctct aaccttgata attaagatcg
      721 gtagcgcatc atcaaaggtc acttccttga taacattaaa actacttcca gttcccatat
      781 ctgtaccatc aaatcgctgg aatcggacac gcgcttgagg gaagaatgct gacggatatt
      841 tgccaaagag taaaattgct gccttggtta atttcccatt gattagaaat cgacgtgctt
      901 taaggatttc ttccacagaa cgctctgata tatcaaaacg atttttaaaa tcctgaacca
      961 agctatcatc aatatcttcc agactggcgt ctggcaccac ttcatcttca aagaaacgtt
     1021 gtcccttgtc atagctgagc tgagtgcgtt gctcgtagct caacttgact gtttcatcac
     1081 cctgacgaag ataaacctca tcatttggcg cggcaatcac tcggtttgac gacaattcaa
     1141 ctgagataac taaaatgaaa tcttcttcac ccttatgatt gattacaggg atttcctcaa
     1201 aagataaatc caaaggagtc tcacgcatct cacgatcaat ctttttgaaa tcgtctatgg
     1261 gataagccct gccgtccttg aaaccagtga taatattttc ctgtttctcg tcctcaatac
     1321 caataactag ttgaccgcca tctgcattgg caaaagcaat caagtgtttg agaagttcag
     1381 acggtttctt tctggctgat tttcgatcta ggtattggct ttctggagaa aattgatagt
     1441 gagataagtt ttgattcata tagttctcct taaatatata aaaaatactt aacaattcat
     1501 gatttacaaa gtcctagatt ttaaatgtac aatattattt ctctcttgta acaacgtctc
     1561 ctttggaatg tccataagct ctgaaaatat ctctattgga agaggatagc cgtacttgag
     1621 attaaattgc tggactatgg attgtttttc aaataagccc gcatccgtca gtaatttata
     1681 tgcctgttta gcaaggatcg gtcgtgatac tggaatactt gcatcctctg gctcttctct
     1741 tcgccatcct ctggcactca ttcttttttg tagacgagta tattgttccg agtttaacaa
     1801 acccaaatcc tttgcacgat aaatcatact ggctatagat acattccact tagacttcaa
     1861 tttcaaataa tatgctaaat cttcttcatg tccttttaaa tcttcagaaa aagcagaggc
     1921 tggtaataaa aaactcgaag caaatctatt agcttcttgc tccatttgtc tatattcaat
     1981 atttgaaagc tcctgtggat atactgttct tgcatgcaaa gcccaatgcc ctaactcatg
     2041 agccaagcta aattgttgcc tgaaaaaatt attattatct tggtcaatta aaatacaata
     2101 atatctctca gaatctgttt ccattttcaa ttcaacaaaa cttccaaaag catccacttt
     2161 ctcagacttt gaattaatta tagcaatatg gaatccattc gtttctagta acctaagaac
     2221 actggaaatt gggctatcac ctaatcccca attctttctt atctgatttg caacttcctc
     2281 tggtgaagca ttttcatgac tttcaaattc tgctaatttc gggaaatcaa cataatcttc
     2341 aaaaaaattc gccaagagag ccagtgcttt ttttagcatc tcactagact tcttctcagt
     2401 ttgtgaggat gttaacttac ttctataaaa agtacctaaa tcagtagtta taaatttatc
     2461 ttttgtttga tagaaggaca gcggaaattt cagttcaaaa attatttttt gcaatacctc
     2521 agaactcggc tttgataaat tcttttcgta tttagaaatc atctgtttag aaactccaac
     2581 gttttccgcc aattggctaa tggaataatg tctaaaatat ctcgattctc gaagtctatc
     2641 tccattaaat tcttgagcca ttataatatt ccttctacta ttggttttaa tgtaacgagt
     2701 tgaggctcat ctactaaatc attcacctgt tcatcacgta tggcctcagt tctaattata
     2761 ccagctgaac ttggaagtaa gtgcgaaata tccactgaac taactgataa aaattgtgga
     2821 gtgtagtctt ctaacgaagc actcacagct tcttgaccta cataatcaac aatcaaaaat
     2881 ctaatcttag tcacatgttc acaatactca ccaagcatcc taaccaaatc agcttctctt
     2941 cttttcactt cagagctatc cgcatcaaaa agagaaagct gttctacttc ttgttcaggg
     3001 taaagtctct catttttcaa gagtaaactt aaggaataat gagtagaggt tcctttttta
     3061 aaatatcgat tacgaattgt cctaaaatta tttttggaga agaaggctat tagttcacct
     3121 gtctcaatat tcagtatagg gtcaaattgc caaatccccc tcttaatatg caaaactttc
     3181 caaacaacac tattatcaaa taagtcttta agcatattcg atcttcgtgc ccaagtagcc
     3241 tgataaattc cattttgact agtctctgag atagcaactt tataatcctg ctccagatgc
     3301 ctagttgtaa aactcatcgc ttccaaacac ttgatgatta cttctctttc aatatcataa
     3361 ctatatttca tttattcacc tcaattcgtt tgttatttaa cttcattata acagaccaag
     3421 gagacaaaaa caagaaaaac taccaaaaaa gtcaaccaaa gtgtgtagaa ttaaataatc
     3481 ccatctcctc agcgatgcta atatctttct ccttacacat actcacatct aagtagatta
     3541 aatagctagt tactaaatgc tataataaaa aaattagg
//
LOCUS       DASGCC010000145         3506 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.146, whole genome shotgun sequence.
ACCESSION   DASGCC010000145 DASGCC010000000
VERSION     DASGCC010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3506
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.146"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(32..439)
                     /locus_tag="U1404_001768"
     CDS             complement(32..439)
                     /locus_tag="U1404_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5348684.1"
                     /translation="MITYKQNPQLDFQAVLEIYDSVGWTNYTDRPTMLQKALEHSLLV
                     LAAFDGDRLVGLLRAVGDGHSIVFIQDILVLPTYQRQGIARQLLEQAIAYFPGIYQLH
                     LLTDNTEKTRSFYEAIGFTAVDSLDSVAYTYLK"
     gene            complement(551..1153)
                     /locus_tag="U1404_001769"
     CDS             complement(551..1153)
                     /locus_tag="U1404_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEM5348685.1"
                     /translation="MKKIDIKTLFATSSIFLLIALLTIYYYGALPDTMVTHFGVNGEP
                     NGSMPKYMVTILTPLLFFCVHLFICILYDVKGIGKTPVIRVFKWLFPLLALIIQVSLL
                     WYNLGGELDYRRLVIGLLAVYYMVIGNYLPKEELDSKTNEIERKGRKQSGYLLMIGGL
                     LQLVSLLGSPTLSILVMILVGISVVSLSIYYAYLHFKTAS"
     gene            complement(1140..1418)
                     /locus_tag="U1404_001770"
     CDS             complement(1140..1418)
                     /locus_tag="U1404_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5348686.1"
                     /translation="MGLSETLKAISAPIRRQILDSLKSGPKSAGEIVEQFQLTGATVS
                     HHLSTLKKAGLILEEKQKNFIYYRLNYTVFEEVLVWIASFGGQQDEEN"
     gene            complement(1563..3143)
                     /locus_tag="U1404_001771"
     CDS             complement(1563..3143)
                     /locus_tag="U1404_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000673092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5348687.1"
                     /translation="MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQ
                     AQTGTGKTAAFGLPTLNKIDTNNQAIQALIIAPTRELAVQSQEELFKFGREKGVKVRS
                     VYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGF
                     LDDIEAIIERVPESRQTLLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYY
                     LRVKEHEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQN
                     KRLRVIRDFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG
                     QSGQSITFVSPNEMGYLAIIEDLTKKRMKGLKPATAQEAFEAKKKVALKKIEREMADE
                     TIRSNFDKFKKDAIQLAAEFTPEELALYVLTLTVQDPESLPEVEIAREKPLPFKFAPG
                     QAKGKGGRGGRDRDRGGRRDGDRNRDRGGRRGDRNDRNRRDDKFKRDNRRQDNKKPHQ
                     RTSSEKKTGFVIRNKGER"
BASE COUNT          990 a          793 c          665 g         1058 t
ORIGIN      
        1 ctcccagcct ctgctttttt agattgtttt attattttaa ataggtgtaa gcgacactgt
       61 ccaggctatc aacggctgta aagccaattg cctcatagaa agaccgtgtt ttctcagtat
      121 tgtccgtcaa gagatggagt tgataaatac ctggaaagta ggcaatggcc tgctccaaaa
      181 gctgacgcgc aattccttgt cgctgatagg ttggtaggac caagatgtcc tgaataaaaa
      241 cgattgaatg cccgtcgcca actgctcgca agagacccac tagacggtca ccgtcaaagg
      301 cagcaagaac gagcagacta tgttccaagg ccttctgtaa catggtaggc cggtcagtat
      361 aatttgtcca accaactgaa tcatagattt caaggactgc ttgaaagtcg agttgaggat
      421 tttgtttgta agtaatcatg tctttctcct ttgtattgtt ttttagaata caaaggcttt
      481 gtccattgtt aaaacgccca tggtcttacc tcctgtttta ctacatttag tataacaaaa
      541 actgctccaa ttatgaagcg gttttaaaat gcagataagc ataatagata ctaagactta
      601 caacagaaat accaaccaat atcattacaa ggatagatag ggttggtgaa cccaacaaac
      661 ttactaactg caacaaccca ccaatcatca agagatagcc tgactgcttt cttccctttc
      721 gttctatttc attggtcttg ctatccaatt cctccttggg taaataattt cctatcacca
      781 tataatagac agccagcagt ccaatgacaa gcctacggta atccaattct cctcctaaat
      841 tataccagag taaagaaact tgaatgatga gagccagtag cggaaaaagc catttgaaca
      901 ctcgaatgac cggtgttttc cctatccctt tcacatcata aagtatacaa atgaataggt
      961 gaacacaaaa gaatagtagc ggtgtcaaaa ttgtcaccat atacttgggc atagagccat
     1021 ttggctcacc atttacgcca aaatgcgtta ccatggtatc tggcaatgct ccatagtaat
     1081 aaatcgtcaa taaagcaatc agtaggaata tactagaagt tgcaaataag gtttttatgt
     1141 caattttctt catcttgttg ccctccaaaa cttgcaatcc aaaccaagac ttcttcaaag
     1201 accgtatagt ttagacgata ataaataaaa tttttctgct tttcctccaa aattaatcca
     1261 gcttttttca aagtggataa atgatgagaa actgttgctc ctgttaattg aaattgttct
     1321 acaatttccc cagcagactt cggccccgac ttaagactat ctagaatttg cctacgaata
     1381 ggagcagaaa ttgccttcaa ggtttcagac aatcccataa taagcctcct tgtccatcta
     1441 tttagaaata tttctaaata gaattatact ctgtttttat tgtttgtcaa gaactatttc
     1501 gattattttc taaatagatt tcaaaaaaaa cagaccactc tttatggtct gtcaaatccg
     1561 gcttatctct cccctttatt gcggataaca aagcctgttt tcttttcact tgatgtgcgt
     1621 tggtgtggtt ttttgttgtc ctgacggcgg ttgtcgcgtt taaacttgtc atcgcgacgg
     1681 ttgcggtcat tacgatcacc acggcgtcct ccgcggtctc ggttgcggtc tccatcacga
     1741 cgaccaccgc gatcacggtc gcgaccacca cgtccaccct tgcccttggc ttgaccaggt
     1801 gcaaacttga atggcagtgg tttttctcgc gcaatttcta cctctggcag actttctgga
     1861 tcctgaacag tcaaggtcaa tacataaagc gctaactctt caggggtaaa ttcagccgct
     1921 aactgaatag catctttctt gaacttatca aaattgctac ggatggtttc atccgccatt
     1981 tcacgctcaa tcttcttcaa agcaactttc ttcttggctt caaatgcttc ctgagcagtt
     2041 gctggcttga gacctttcat gcgtttcttg gtcaaatctt cgatgatggc caagtagccc
     2101 atctcgtttg gcgaaacaaa ggtaatagac tgacctgatt gacccgcacg acctgtacga
     2161 ccgatacggt gcacatagct ttcagggtcc tgtggaatat cgtagttata gacatgcgtt
     2221 acacctgaga tgtccaaacc acgggccgca acgtctgtcg caactaagac atcaatttga
     2281 tcatttttaa aatcacgaat gacacgaaga cgcttgttct ggtccaaatc tccgtgaata
     2341 ccttctgcac ggaaaccacg caatttcaaa ccacgagtca attcatcgac acggcgtttg
     2401 gtacgaccaa agacaataga caattctggc tggtcaacat ccataagacg agtcatggtg
     2461 tcgaattttt catgttcttt gacacgaaga taatattggt caacattgac attagtcaat
     2521 tcctttgctg caatcttaac gtgctcaggt tctttcatga acttgacacc aatacgcttg
     2581 attggctctg gcatggttgc agaaaacaga agggtttgac ggctctctgg tacacgttcg
     2641 atgatcgctt caatatcatc caagaagccc atgttgagca tttcatctgc ctcgtcaaga
     2701 atgagagttt caacaccgtc aagtttgagg gccttgcgtt tgatcaagtc caagaggcga
     2761 cctggtgtac caacaacgat gtgagcacct gaacgaaggg ccttgatttg cttttcaatg
     2821 cttgagccac cgtaaacaga gcggactttc acaccctttt cacgaccaaa tttgaaaagt
     2881 tcttcttgac tctgcaccgc caactcacgt gttggggcga taatcaaggc ctgaattgct
     2941 tgattgtttg tgtcaatttt gttgagggtt ggcaaaccaa aggctgcagt tttccctgtc
     3001 cccgtctggg cttgaccaat cacatcttta ccttcaagag caagcggaat ggtctgctcc
     3061 tggattggtg acggcgtttc aaaaccagcc ttctcaacgg caagcaaaat atcttctgat
     3121 aattgtaaat ctgtaaattt caatgtattc tcttttctaa aaggcagtgc gaagctacct
     3181 tatctaactt ttttgtaaca agatatcagg gtcgaaccac tgatattgga tttgcaactt
     3241 accaagtata acacaatcta acaataatag ttaatattta cctttaaaaa gtcaataata
     3301 cgttttcatg aggagtccat catttttata gacatttgaa ttaactttga tacatcgata
     3361 ctttcggttt gccctactct agtaccagct ccttgtctga aagttatact cttcgaaaat
     3421 caaaatcaga cgttgttgac ttgatctgat gaacttcagt tctatctgca tctgcgtcgc
     3481 ttagtctgtt tttgattttc attgag
//
LOCUS       DASGCC010000146         3504 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.147, whole genome shotgun sequence.
ACCESSION   DASGCC010000146 DASGCC010000000
VERSION     DASGCC010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.147"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(41..1045)
                     /locus_tag="U1404_001772"
     CDS             complement(41..1045)
                     /locus_tag="U1404_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEM5348688.1"
                     /translation="MHHNTWKGIILQKQGLLKPQSVQQICQNLNGLQAQFQPYVHIGF
                     RNRMTNEAFQNQDWQASLTRQWSLRRTVHAYLKSEIPLYIHEGRMASVDYLETVSWDG
                     ALPQVKKKFYQVILEALETGPMTREELKILCRAENIGVEEEKQVFNAWGGLLRYMVER
                     GEIYQEYGVKRFHRLRDFQPLPKKEAELEIARRYFTGFGPVSLADARYYFKENKSTVL
                     KWMEQLDLKTVEVAGEERFYLGELEEAELPDCLFVAGFDQLLLGYEKKANPFFNPKYI
                     RNIYTLTGIVKPVVFYKGRFVATWKRDKGTILLDIFEDITQQEEKELEHYRQMFEKIL
                     "
     gene            complement(1110..1946)
                     /locus_tag="U1404_001773"
     CDS             complement(1110..1946)
                     /locus_tag="U1404_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5348689.1"
                     /translation="MIKEFNATVRYLESVLESEIDEREFLRISGYSVPMFSRLFSILT
                     DMSLSEYVRLRKLTRAAMDIREGQAKIIDIAFKYGYESSDSFAFAFKQFHQISPSQVR
                     KGLPFKVLLPLQLSLTIQGGKEMDVRIEKKAGFTVAGLLRTAISNEVCPQVWEDLFKN
                     HTYEELAALGSGQSFGVCTLAQADETINYMAAYDVTDSEKATKLGLELLDVHEADYAI
                     FTLIGPVPQSIHAGWRYALETFFPEHGYRHSGAPDFEYYFEGDMSSPDYQMELWIPIV
                     KA"
     gene            complement(2023..3357)
                     /gene="trmFO"
                     /locus_tag="U1404_001774"
     CDS             complement(2023..3357)
                     /gene="trmFO"
                     /locus_tag="U1404_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEM5348690.1"
                     /translation="MSQTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHK
                     TDKFAELVCSNSFRGDSLTNAVGLLKEEMRRLDSIIMRAGEAHRVPAGGAMAMDRENF
                     SQAVTDEIHNHPLIEVIRGEITDIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFY
                     DAAAPIVDSSTINMDLVYLKSRYDKGEAAYLNAPMNKEQFTAFYEALISAEEAPLNSF
                     EKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEYKTPYAVVQLRQ
                     DNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQT
                     FATKKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFRGEEPVIFPQTTAIGALPF
                     YITHTESKHFQPMNVNFGIIKELDGPRIRDKKERYEAIAERSLKDLEEFLTV"
BASE COUNT          979 a          822 c          706 g          997 t
ORIGIN      
        1 atttgcaatt ttcggatttt ccgaaaatag ttagttaatg tcacagaatt ttctcaaaca
       61 tttggcggta atgctccaat tctttttctt cttgttgtgt gatatcttca aaaatatcta
      121 gcaaaatagt acctttatct cgtttccagg ttgccacaaa tcgcccttta taaaatacaa
      181 caggtttgac aatacccgtc aaagtataga tattacggat gtatttagga ttaaaaaagg
      241 gattagcttt cttttcatag cctagcaaaa gttggtcaaa tcctgcaacg aagaggcagt
      301 cagggagttc tgcttcttct aattctccca gataaaagcg ttcttctcct gctacctcaa
      361 cggtttttaa atctaattgc tccatccatt ttaggaccgt agatttattt tccttgaaat
      421 aataacgagc atccgctaaa ctgactggcc caaaacctgt aaaataccgt cgagcgattt
      481 ccagctctgc ttctttcttt ggtagtggtt gaaagtcacg taaccgatga aaccttttta
      541 ccccatactc ttggtaaatt tctcctcgtt caaccatata acgaaggaga ccaccccatg
      601 cattgaaaac ttgtttctct tcttctactc caatgttctc agctcggcaa agaattttca
      661 actcttcacg agtcataggg ccagtttcta aggcttccaa aataacttga taaaattttt
      721 tcttaacctg tggtagagca ccatcccaac ttactgtttc aagataatca acgcttgcca
      781 ttctcccttc atgaatatag agaggaattt ccgatttgag gtaggcatga actgtccgtc
      841 gaagtgacca ttggcgtgtc agtgaggctt gccagtcctg attttgaaat gcttcattgg
      901 tcattcgatt acgaaaaccg atatgtacat agggctgaaa ttgtgcctgc aaaccattga
      961 gattttggca gatttgctga acagactgag gtttcaacag accttgtttc tgcagaataa
     1021 ttcccttcca agtattgtgg tgcatcgtat ttctcctccg ctttctaatc ccagtataac
     1081 acaaaagaca cccgaaggtg tcctgtacat tatgctttca caatgggaat ccagagttcc
     1141 atttggtagt ctggggaact catgtctcct tcaaaatagt actcaaaatc tggtgcacct
     1201 gaatggcgat agccgtgttc aggaaaaaaa gtttctagcg cataacgcca tcctgcatga
     1261 atagattgag gaacagggcc tattagggta aaaatagcat agtcagcttc gtgaacatca
     1321 agaagttcta agcctaactt agtcgctttt tcactatctg tgacatcata agcagccata
     1381 taattaatcg tctcgtccgc ttgagctaat gtacaaactc caaaggactg cccacttcct
     1441 agagcagcta actcttcata agtatggttc ttgaacaagt cttcccatac ctgcggacac
     1501 acttcgttac tgattgctgt gcgaagaagt ccagcaactg taaaaccagc cttcttttca
     1561 atacgaacat ccatttcttt acctccttgg atggttaatg atagttgcaa gggtaagagg
     1621 accttaaaag gcaacccctt acgcacttga ctaggagaaa tctgatgaaa ttgtttgaag
     1681 gcaaaggcaa aagaatccga agattcatac ccatatttaa aggctatatc tataatcttt
     1741 gcctgtcctt cacgaatgtc catagcagct cgcgtcaact ttcgtaaccg aacgtattct
     1801 gacaaggaca tatctgtcag aatcgaaaag agacgactaa acatgggaac ggaatatcct
     1861 gatatgcgca aaaattcccg ttcatcgatt tcgctttcta aaacggactc taggtaacgt
     1921 acggttgcat tgaactcttt tatcatcaac ttcccctttc cctatcagtt taccgtctac
     1981 catccaagtt ttcccgatac ttttcgtcgg aaaactatcg gcttaaaccg tcaaaaactc
     2041 ttccaagtcc ttgagggaac gctctgctat tgcttcataa cgctccttct tatcgcggat
     2101 acgtggtcca tccagctcct tgatgatgcc aaagttgaca ttcataggct ggaagtgctt
     2161 gctttctgtg tgggtgatgt agaatggcag agcaccgatg gctgtggtct gtgggaagat
     2221 gaccggctct tcgcctcgga agcgacgaac agcattgata ccggccacta agccagaagc
     2281 ggcagactca acatagcctt ctactcctgt catttgacct gcaaagaaaa gatttggatt
     2341 tttcttggtc gcaaaggtct gttccaatag gtttggcgaa tccatgtagg aattgcggtg
     2401 catgacacca taacggacaa attcagcatt ttcaaggcct ggaatcatct ggaagacccg
     2461 cttctgctcg ccccacttaa ggtgagtctg gaagccaaca atattgtaaa ggctacctgc
     2521 tgcgttgtcc tgacggagtt ggacaacagc atagggtgtc ttgtattcac cgtcacgagg
     2581 tcccttgtag tcttctgggt attccagacc gactggcttc atcggaccat acaacatggt
     2641 tttgatccca cgtttggcca tgacttcaat gggcatacag ccttcaaaat atttttcttt
     2701 ttcaaaggaa ttgagcggtg cttcctcggc tgaaatcaag gcctcataga aagcggtaaa
     2761 ctgctccttg ttcatcggag cattgagata ggcagcctct cccttatcat aacgggactt
     2821 gagataaacc aagtccatgt taatggtcga actatcgaca atcggtgctg ccgcatcgta
     2881 gaagtaaaaa ccgtcgccac cattgagtgc gtgaatcttc tccgccaagg cgtcagatgt
     2941 caaaggcccc gtcgcgataa ctgtaatagc atcgtcagga atgtccgtaa tctcaccgcg
     3001 aatgacctca atcagtgggt gattgtgaat ctcatctgtg accgcttggg agaaattctc
     3061 acggtccatg gccatagcac cgccagcagg cacacggtga gcctcaccag ctcgcatgat
     3121 aatggaatcc aagcgacgca tttcttcctt gagaagaccg acagcgttgg tcaaactatc
     3181 accacggaat gaattggaac aaaccaattc cgcaaacttg tccgttttgt gctgaggagt
     3241 cggcttgaca ccacgcatct cgtaaagttt gacaggaatg ccacgtttgg caatctgata
     3301 agcagcttct gagccagcca agccagctcc gataacgtta atgtgggttt gagacatgaa
     3361 actaatacct ctagtcagaa tatctgacta ctgtttggga ataccccaaa acagaacctt
     3421 tctaaatttt atacctatct agtataccag aaaatggcta gaaaagacaa aactaccttc
     3481 attgaaataa aagtagtttc acct
//
LOCUS       DASGCC010000147         3474 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.148, whole genome shotgun sequence.
ACCESSION   DASGCC010000147 DASGCC010000000
VERSION     DASGCC010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3474
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.148"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(14..1003)
                     /locus_tag="U1404_001775"
     CDS             complement(14..1003)
                     /locus_tag="U1404_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5348691.1"
                     /translation="MEEQKSITMKDVARVAGVSVGTVSRVINNEPGIKESTLEKVNTA
                     IRELNYIPDVYARGMKKNKTETIALIIPTVWHPFFGEFAYHVEVELSKKNYKLLLCNI
                     SGPKRELDYLTMLQQNKVDGIIAITYSPIEDYLSSNIPFVSIDRVYENKDIACVSSDN
                     RAGAELAANTLIAKGGRHFAFIGGHNKTINETKKRRLYFEKRILEAGFPCHVLDLEEP
                     YDDFVGQVEEFLINNPQVDAIFTINDFTALDTLAVLEKLGRRVPEDVQVIGYDGIQLA
                     SEKSLALSTIRQPLESMAQEAVACLIDIIEKRERPLQVTLPISYLEGKTTKKF"
     gene            complement(1160..1705)
                     /locus_tag="U1404_001776"
     CDS             complement(1160..1705)
                     /locus_tag="U1404_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348692.1"
                     /translation="MSLQNRVEEMYKDHEVKPYISPERDLAAWLLEAKPVPKRNMVRL
                     EEGILPGDIILLWRISLGSFETTTPYSKYFEYMYGINGPAHMEQLIADGYAYVESAFD
                     SLDHITSTAKKNILKAEGVTGLSKMKAADLDTALKDNLTEEKLAPYFTVRGYALTEKG
                     RAALENHPEVLAKHPMKKMYK"
     gene            complement(1706..2083)
                     /locus_tag="U1404_001777"
     CDS             complement(1706..2083)
                     /locus_tag="U1404_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM5348693.1"
                     /translation="MIQSIGQVMLYVNDIEASAQFWKEKMGFERVEKQVQGPQTSYII
                     APKSDSEVQFVLHDKAEVAEMEPELNLGTPSILMTSVDVAKTYEELVERGVTTNPVMD
                     LGFMKVISFADNDGNYYAIREVK"
     gene            complement(2168..2521)
                     /locus_tag="U1404_001778"
     CDS             complement(2168..2521)
                     /locus_tag="U1404_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HEM5348694.1"
                     /translation="MFENLFAPDGSLVWHTALFYSFSAIILATVCFHIIKNFMEWHHN
                     NRAPKESCKAKLVSKRTHVFGNEVARTNYYVTFEWEGKRQEFRLRSDEYALLAEGDVG
                     TLHFQGTRFLGFERL"
     gene            2664..3467
                     /locus_tag="U1404_001779"
     CDS             2664..3467
                     /locus_tag="U1404_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM5348695.1"
                     /translation="MKKILVLALASSILLTACTNNSTANSSSSTASSSSPSSTTTADT
                     TASSQYAKDLAYAINNPKATFPQLSNEIGENEAAVKIKTTEGDITIKLFPEQAPLTVE
                     NFLTHAKEGYYNGTIFHRVIKDFMIQGGDPLGNGTGGESIWSGKDTTIDAGNGFKDEI
                     SAFLYNIRSSLSMANAGAGTNGSQFFINQNTTDMSSQLSSSSYPGKIIDAYKNGGNPN
                     LDGKHTVFGQVIEGMDIVDKIASVETDNSDKPKTDVKIESIEILKDYTF"
BASE COUNT         1026 a          757 c          649 g         1042 t
ORIGIN      
        1 gtcaactact tttttaaaat ttttttgtag tttttccttc aagataggaa atcggtagag
       61 tgacttgtag ggggcgctct cttttctcaa taatatcaat tagacaggca acggcttcct
      121 gggccataga ctccaaaggt tgacgaatgg tcgaaagggc taaagatttt tcacttgcca
      181 actgaatacc atcatagcca atcacctgca catcttctgg aacccgtcgt cccagttttt
      241 ccaaaacagc aagtgtgtct agggccgtaa aatcattgat ggtgaaaatg gcgtcaacct
      301 gtggattgtt aatcagaaac tcttcgactt gaccaacaaa gtcatcatat ggctcttcca
      361 agtccaaaac atgacaagga aaacctgcct ctaaaatccg cttttcaaaa tacaatctac
      421 gcttcttggt ttcgttgatg gttttattgt gcccaccgat aaaggcaaaa tgacgaccac
      481 cttttgcaat caaggtattc gctgccagtt ccgcaccagc tcggttatcc gaactgacac
      541 aggctatgtc cttgttttca taaacacgat cgatactgac aaatggaatg ttggaggaca
      601 ggtaatcttc aatcgggcta taagtgatag caataatgcc gtccacctta ttttgttgca
      661 gcatagtcag ataatccagt tccctttttg gaccagaaat attgcaaagg agcaacttgt
      721 aatttttctt actcagttcc acttcaacat gataggcaaa ttctccaaaa aaaggatgcc
      781 aaactgtcgg aataatcaag gcgatggttt cggttttgtt cttcttcatc ccacgagcat
      841 aaacatctgg aatgtaattt aattcccgaa tggctgtatt gactttttca agcgtacttt
      901 ccttaatacc tggttcattg ttgataactc ttgatactgt cccaacactg acccctgcaa
      961 ctcgagctac atctttcata gtaattgatt tttgttcttc catggtttac ccctttcttt
     1021 tgaaacgttt caataattta tactagaata tcattgatag cgttttctgt caagggaaat
     1081 agacttatta gcaaataaaa acacccaaaa agctagaatg attccaactt ttgggtgccg
     1141 ttcaaaaatc ttttctattt tatttgtaca tcttcttcat tgggtgtttt gcaagtactt
     1201 cagggtgatt ctcgagagca gctctgcctt tttccgtcaa ggcataacct cggacggtaa
     1261 agtatggagc cagtttttct tctgtcaagt tgtccttgag ggcagtgtcc aggtctgccg
     1321 ccttcatctt ggacaggcct gtcacaccct ctgctttgag gatatttttc ttggcagtcg
     1381 aagtgatgtg gtccagcgaa tcaaaggccg attccacata ggcataaccg tctgcgatca
     1441 actgctccat gtgagcagga ccattgatac catacatata ctcaaagtac ttggagtagg
     1501 gcgtcgtcgt ttcaaaagaa cccaggctaa tccgccataa taaaataata tcacctggca
     1561 aaattccttc ttctagccga accatattgc gtttgggaac gggcttggcc tccaaaagcc
     1621 aggctgccaa gtcacgttcg ggggaaatat agggtttgac ctcatggtct ttatacattt
     1681 cttcaacacg attctggagt gacatttact ttacctcacg aattgcgtaa taatttccat
     1741 cattgtctgc aaagcttatt accttcatga aaccaaggtc catgactgga ttcgttgtga
     1801 caccacgttc aacaagttct tcgtaagttt tggctacatc tactgatgtc attaagattg
     1861 atggtgtacc taagtttaat tctggctcca tctcagcaac ctccgcctta tcatgaagta
     1921 caaattgtac ctcactatct gatttaggtg caataatgta agaagtttgg gggccttgca
     1981 cttgtttttc tacacgttca aatcccattt tctctttcca aaattgagct gaagcctcaa
     2041 tatcattcac atataacata acttgtccga ttgattgaat catcttaaat acctcttttg
     2101 cgttgtacga acatgtgttc aaaccattat acactagata gggatattct ccaaagaaaa
     2161 acgactctta gagccgttca aaacctagga aacgagtccc ctgaaaatgc agggtgccta
     2221 catctccctc tgctaaaagg gcatattcat ctgaacgaag gcgaaattcc tgccgttttc
     2281 cctcccattc aaacgttaca taataattgg ttcgtgctac ttcgttacca aaaacatggg
     2341 ttcgtttaga gacaagctta gccttgcaag attctttggg cgcccgattg ttgtggtgcc
     2401 attccataaa atttttaatg atatggaaac aaaccgtcgc taatatgatt gcggaaaaac
     2461 tgtagaaaag ggccgtatgc catactaggc ttccatctgg ggcaaacaag ttctcaaaca
     2521 tcattattct ccttttgcat ctgtaaatat agtatatcat attgttgttt tagatacgct
     2581 ttttatacta gataaaaatt gaaaaaatcc atatttcatg gtagaatgag cataattttg
     2641 aacaagacaa gaaaggattt tcaatgaaaa aaatactagt tcttgctcta gcttcgagca
     2701 tcttgctaac tgcctgcaca aacaactcga cagctaatag ctcatcttct acagcatcta
     2761 gctctagtcc aagctcgact acgacagctg atacaactgc ttctagccaa tatgccaaag
     2821 atttggcata cgccattaac aatcccaaag ctacattccc ccaactttcc aatgaaattg
     2881 gtgaaaatga ggctgctgtt aaaataaaaa caaccgaagg cgacatcact ataaaactct
     2941 tccccgagca agctccacta actgtggaaa actttctgac tcatgcgaag gaaggatact
     3001 ataatggaac aatcttccat cgtgtcatta aggatttcat gattcaaggt ggcgatcctc
     3061 ttggaaatgg tactggtgga gagtctatct ggtccggaaa agatactact atcgatgctg
     3121 ggaatggttt taaagacgag atttcagctt tcctttataa cattcgtagc tcactttcta
     3181 tggcaaacgc tggcgcggga acaaatggaa gtcagttttt catcaatcaa aatacaacag
     3241 acatgtctag ccaactctct agttctagct atcctggtaa aatcattgac gcttataaaa
     3301 acggaggcaa tccaaactta gatggcaagc ataccgtatt tggtcaagtc attgaaggga
     3361 tggacatcgt ggataaaatc gcttcagtcg aaacagacaa tagcgataaa cctaaaacag
     3421 atgtaaaaat tgagtctatt gaaattctga aagattacac cttttaaaaa tggg
//
LOCUS       DASGCC010000148         3457 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.149, whole genome shotgun sequence.
ACCESSION   DASGCC010000148 DASGCC010000000
VERSION     DASGCC010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3457
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.149"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            80..568
                     /locus_tag="U1404_001780"
     CDS             80..568
                     /locus_tag="U1404_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EbsA family protein"
                     /protein_id="HEM5348696.1"
                     /translation="MIKIFGKIRYHWQPDLSWAIIYWSLTFTPIFIGMALLLEKLQVS
                     RLFILLVSLFAVLVVLGLHRYFEIKDEHLRIASANPFAVQKIEIATIEKIEVSYLAIR
                     IFAKEFPNGRMYYMRKWTKKYFINHLAIHSCFKGKIELIDHLIKQDYFEEYYTKKAKS
                     IR"
     gene            complement(557..751)
                     /locus_tag="U1404_001781"
     CDS             complement(557..751)
                     /locus_tag="U1404_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEM5348697.1"
                     /translation="MKVKLIPERCIACGLCQTYSSLFDYDDDGIVVFSDDSQFEKTIE
                     PNPDILKAIKSCPTKAISAD"
     gene            802..1278
                     /locus_tag="U1404_001782"
     CDS             802..1278
                     /locus_tag="U1404_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5348698.1"
                     /translation="MSQEPWNEEVYHTETTSRKERLSKGVANTTVFTVLAIIFFVIVL
                     IIGIMAVYLSIGGGSKTDSTKEFYTPSTTTVVAESSSSAAETQESTSTDTTETETSSS
                     PAEATDGSTLTVQAGEGVGQLAARGGISIAELERLNPEKMTTGSWIAHPGDVVRIR"
     gene            1288..1965
                     /locus_tag="U1404_001783"
     CDS             1288..1965
                     /locus_tag="U1404_001783"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEM5348699.1"
                     /translation="MKSIQIAIDGPASSGKSTVAKIIAKNLGYTYLDTGAMYRSATYL
                     ALTNGIEVTDQNRIVDLLAQYPIRFGRDENGQQLVFVGDEDVTLPIRDNQVTNNVSAV
                     AALPLVREELVRLQQDIAQAGGIVMDGRDIGTVVLPQAELKIFLVASVEERALRRFKE
                     NTERGIETDLESLKEEIAARDYKDSNREVSPLKAADDAITFDTTGVSIEGVVKFISEK
                     AKEILDR"
     misc_feature    1992..2120
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            2146..2667
                     /gene="infC"
                     /locus_tag="U1404_001784"
     CDS             2146..2667
                     /gene="infC"
                     /locus_tag="U1404_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000848185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEM5348700.1"
                     /translation="MAKQDLFINDEIRVREVRLIGLEGEQLGIKPLNEAQAIADSANV
                     DLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSVVTVKEVRLSPVIDKGDFET
                     KLRHARKFLEKGNKVKVSIRFKGRMITHKEVGAKVLAEFAEATQDIAIIEQRAKMDGR
                     QMFMQLAPASDKK"
     gene            2694..2894
                     /gene="rpmI"
                     /locus_tag="U1404_001785"
     CDS             2694..2894
                     /gene="rpmI"
                     /locus_tag="U1404_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEM5348701.1"
                     /translation="MPKQKTHRASAKRFKRTGSGGLKRFRAYTSHRFHGKTKKQRRHL
                     RKAGMVHAGDFKRIKSMLTGLK"
     gene            2938..3297
                     /gene="rplT"
                     /locus_tag="U1404_001786"
     CDS             2938..3297
                     /gene="rplT"
                     /locus_tag="U1404_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019786714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEM5348702.1"
                     /translation="MARVKGGVVSRKRRKRILKLAKGYYGAKHLLFRTAKEQVMNSYY
                     YAYRDRRQKKRDFRKLWITRINAAARMNGLSYSQLMHGLKLAEIEVNRKMLADLAVND
                     AAAFTALADAAKAKLAK"
BASE COUNT         1106 a          608 c          742 g         1001 t
ORIGIN      
        1 taataaaaaa tttcaaaaga tagaggtttt cataggaaaa tctctttttt tgtgctagaa
       61 taatagatgg aggtccgata tgatcaaaat ttttggtaaa attcgttacc attggcaacc
      121 ggatttatca tgggccatca tatactggtc acttaccttc acacctattt ttattggtat
      181 ggcactttta ttggagaagt tgcaagtttc aagattattt attctacttg tctcactctt
      241 tgctgtatta gtagtgctcg gcttacatcg ctatttcgag ataaaagatg agcatttacg
      301 gattgcttcg gctaatcctt ttgcagtgca gaaaattgaa attgctacca tagaaaaaat
      361 tgaagtttct tatttagcca ttcgtatatt tgcaaaagag tttcccaacg gacgaatgta
      421 ttatatgcgt aaatggacaa aaaaatactt tattaaccat ttagctattc atagttgctt
      481 caagggtaaa attgaattaa tagaccattt aataaaacag gattattttg aagagtatta
      541 tacaaaaaaa gccaaatcaa tccgctgaaa tggcttttgt aggacatgat ttgatggctt
      601 tgagaatatc tggattgggt tcaatcgttt tctcaaattg tgagtcgtct gaaaaaacaa
      661 cgataccgtc gtcatcataa tcgaatagag atgagtaggt ttggcagagc ccgcaagcaa
      721 tgcaccgttc aggaataagt tttactttca tattagtatt gtaatcatat tttaataaaa
      781 atacaaggag ttttctcaat aatgtcacaa gagccatgga atgaagaagt ttaccacaca
      841 gaaacaacta gtcgtaaaga acgtttgagt aagggggtag cgaatacaac agtatttaca
      901 gttttggcaa ttattttctt tgttatcgta ctgattattg gaattatggc tgtctatctc
      961 tcaatcggtg gcggtagtaa aacagattca acaaaagaat tttatacccc aagcactaca
     1021 acagtcgtag cagagagctc ttcatcggct gctgagacac aagaatctac ttcgactgac
     1081 acgacagaaa cagaaacaag ttctagccca gcggaagcaa cggatggctc tacccttact
     1141 gttcaagcag gtgaaggtgt aggacaactg gctgctcgtg gtgggatttc aattgcagag
     1201 ctagagcgtt tgaatccaga gaaaatgact acagggtctt ggattgctca tcctggggat
     1261 gtagttcgta ttagataaag aggagttatg aaatcaattc aaattgcaat tgacggtcca
     1321 gcttcaagtg gaaagtcaac ggtcgctaaa attattgcta aaaatttggg atatacttac
     1381 ttagatacag gagctatgta tcgctcggct acctatctag ccttgacaaa cggcatagag
     1441 gtcacagatc aaaatagaat cgtggacttg cttgcccagt atcccattcg atttgggcgg
     1501 gatgaaaacg gtcagcaact tgtttttgtc ggtgatgagg atgttacttt gcctattcga
     1561 gataatcaag taacaaataa tgtatcagcg gtagcagcgc ttcctctagt acgggaagaa
     1621 ttggtccgcc tgcaacagga cattgcgcaa gctggtggga ttgttatgga tggtcgtgat
     1681 attggtacgg ttgtattgcc gcaagcagaa ctcaaaatat tccttgttgc ctctgttgaa
     1741 gagcgtgccc ttcgtcgatt taaggaaaat acggaacgtg gcattgagac agacttggaa
     1801 tccttgaaag aggagattgc ggctcgtgac tataaagatt ccaatcgaga agtttctcct
     1861 ttaaaggcag cagatgatgc tattactttt gatacaacag gagtatctat cgaaggtgta
     1921 gtgaaattta tttccgaaaa agcgaaagaa attcttgaca ggtagcttta gacatgttag
     1981 aatagtcgta ttgagaaaag cagaagtgag aacttctcgc cttgcgacta acgttgtctg
     2041 gctctacgga ttaagatttc ttcggaaaga ataatggtgt agtgcggact tgtttagcaa
     2101 gtccgtttcg tttttctcga aaaatataaa atgaggtgaa aagccatagc aaagcaagat
     2161 ttgttcatca atgatgaaat ccgagtgcgt gaagttcgtc ttatcggtct tgagggtgaa
     2221 cagttgggaa tcaaaccact caatgaggct caggccattg ctgatagcgc caacgtggat
     2281 ttagtattga ttcaacccca agctaaacca ccagtagcga aaattatgga ctacggtaag
     2341 ttcaaatttg aatatcagaa gaaacagaaa gaacaacgca aaaaacaaag tgttgtcact
     2401 gtaaaagaag tgcgtctaag tccagttatt gataaagggg atttcgagac aaaacttcgt
     2461 catgcccgta aatttcttga aaaaggaaat aaagttaagg tttcgatccg tttcaagggt
     2521 cgtatgatta cccacaaaga agttggagcg aaagtattag ctgagttcgc tgaagcaacc
     2581 caagatattg ccattatcga acaacgcgct aagatggacg gacgtcaaat gtttatgcaa
     2641 ttggccccag cttcagataa aaaataagct ttttaagcaa aaggagaatt aacatgccaa
     2701 aacaaaaaac tcaccgcgca tcagctaaac gtttcaaacg tacaggttct ggtggattga
     2761 aacgcttccg ggcttatact tcacaccgtt tccacggtaa aactaaaaaa caacgtcgtc
     2821 accttcgtaa agcaggtatg gtacatgctg gtgacttcaa gcgtatcaaa tcaatgctta
     2881 caggtttgaa ataagccgac ttactagaat ttagattatc atttggagga aaattaaatg
     2941 gcacgtgtta aaggtggcgt tgtttctcgt aaacgccgta aacgtatttt aaaattagct
     3001 aaaggttact acggagctaa acatctcttg ttccgcactg cgaaagaaca agtcatgaac
     3061 tcttactact atgcataccg tgaccgccgt cagaaaaaac gtgatttccg taaattgtgg
     3121 atcactcgta tcaatgcggc tgctcgtatg aacggtttgt catactcaca attgatgcac
     3181 ggtttgaaat tggccgaaat cgaagtaaac cgcaaaatgc ttgctgactt ggcagtgaac
     3241 gatgcagcag ctttcacagc tcttgcagat gctgctaaag caaaacttgc taaataagta
     3301 taaaaatgta aagaacttgg tagtgatgaa ccaggttctt tatttttgga aagtagctca
     3361 ctacttgcta aatttcgata tgagtgatat acttaactag taaataaatc gacggtttta
     3421 actttatcgt catttagttt ttcttttgtt acttcat
//
LOCUS       DASGCC010000149         3407 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.150, whole genome shotgun sequence.
ACCESSION   DASGCC010000149 DASGCC010000000
VERSION     DASGCC010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3407
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.150"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..511
                     /locus_tag="U1404_001787"
     CDS             <1..511
                     /locus_tag="U1404_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HEM5348703.1"
                     /translation="LNGPFGIGKTTLANILHKRIENSYLYDPELLGDFLQHQLPKTVC
                     PEDFQDYSVWRRSTYKIVFDLATKTDKIIIIPMTIYKKEYYQEITQQLIQDKIPLEHY
                     ILLADKTTILERLDNRVNEDNIWAKRHLDVCLKAFESHIPGQRLNTDSLKPEEVAEEI
                     LMLSEFTKK"
     gene            678..1748
                     /gene="xerS"
                     /locus_tag="U1404_001788"
     CDS             678..1748
                     /gene="xerS"
                     /locus_tag="U1404_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012658412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerS"
                     /protein_id="HEM5348704.1"
                     /translation="MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKE
                     YRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDMEAFILYLRERPLLNANTTQNGVS
                     QTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
                     LFLGDETMEFLDYVDKEYQVNLSNRALSSFQKNKERDLAILALLLASGVRLSEAVNLD
                     LRDVNLNMMIIEVTRKGGKRDSVNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEY
                     RGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHAN
                     TQVTDLYTHIVNDEQKNALDQL"
     gene            complement(1818..3328)
                     /locus_tag="U1404_001789"
                     /pseudo
     CDS             complement(1818..3328)
                     /locus_tag="U1404_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646836.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
BASE COUNT          976 a          720 c          750 g          961 t
ORIGIN      
        1 gttaaatggc ccattcggta tcggaaagac tactttagca aatatattac acaaacgaat
       61 agaaaactca tatctctatg atcccgagtt actaggtgat ttcttacaac atcaattacc
      121 taagactgta tgtcctgaag attttcaaga ttattccgtt tggcgacgga gtacttataa
      181 aatagtattt gatttagcga ctaaaactga taagattatt attattccca tgacaatcta
      241 taagaaagaa tattatcagg agattactca gcaattgata caggataaga ttcctttgga
      301 acattatatt ttgttagctg acaaaacaac cattttggaa cgtttagata atcgagtcaa
      361 tgaagacaac atctgggcca agagacatct tgatgtttgt ttaaaagctt ttgaaagtca
      421 tattccgggg caaaggttaa acacagacag tttgaagcca gaagaggttg cggaggaaat
      481 tctaatgcta agtgagttta ccaagaaata atgtagactt ttgggatttt gggtgtgaaa
      541 aaaaatttcc agttatttat gttttttggt tatccctctg atatccccac aaacatcttt
      601 ccgaaaaact ataattttct tgaaacttat gtaagattat gctatactac tcatatagct
      661 aaaatcagga gaaaatgatg agacgcgagt tattactaga aaaaattgat caactaaaag
      721 aaattatgcc ttggtttgtt ctggaatatt atcagtcaaa attggctgtg ccttacagtt
      781 ttactacctt atatgaatac ttgaaagaat accgtcgatt ctttgagtgg ttacaggatt
      841 cggatttggt atctgtggaa cggattgctg acattccttt ggatattctg gaacatttga
      901 caaaaaaaga tatggaagcc tttattcttt atctgcggga gcgtcccttg ctgaacgcca
      961 ataccacgca gaatggtgtg tcgcagacca ccattaaccg taccctgtcg gctctttcta
     1021 gtctcttcaa gtatttaacc gaagaagtgg aaaatgagca gggcgagccc tacttctacc
     1081 gcaatgtcat gaaaaaggta tctaccaaga agaagaagga aaccttggca gcgcgggctg
     1141 agaacatcaa gcaaaagctc tttttgggcg atgaaaccat ggagttcttg gactatgtgg
     1201 acaaggaata ccaagtcaat ctctctaacc gtgccctctc ctctttccag aaaaataagg
     1261 agcgagattt ggcgattctg gcacttctct tggcttctgg cgtccgtctg tcagaagcgg
     1321 tgaatttgga tcttcgagat gtaaatctca atatgatgat tatcgaagta acccgtaagg
     1381 gtggtaagcg ggactcggtc aatgtggctg ggtttgctaa gccctatctg gaagcctata
     1441 tgagcatccg tcagcaacgc tacaaggctg aaaaaacgga tacggccttc ttcctgtccg
     1501 aataccgtgg tctacccaat cgtatcgatg cttcttctat tgaaaaaatg gttgccaagt
     1561 actctgcgga cttcaagata cgcgtaaccc cccacaaact ccgtcatacc ttggcaactc
     1621 gcctatacga cgccacaaag tcgcaagttc tggtcagtca tcagctgggc cacgccaata
     1681 ctcaggtcac tgacctctac acccatatag tcaatgatga gcaaaaaaat gcactggatc
     1741 aattatagtg ttacgtaata ttaattatgt aaataaatta aggagtaagc gaaaacttac
     1801 ccctttttct cttaaatcta aatcaatgct ttcaattttt cctgattgac agctgggtac
     1861 tggtccaaaa aggctgagag agttcgtaaa acggcaggta tgtgtccagt ctggtcattc
     1921 tccacctgca agaccaagag agtggctcgt ggagactcat acggagcaag agccagccgt
     1981 caccataaag ctcagtcagg tcaaaccgca ctccttcttc gttttctggg ttaaaagcaa
     2041 agccttcgag gctggtgttt ctgaaatcag caataacctg ttcaccaagt gctcgatagc
     2101 ctgccgcttc tagtttgaac cgtacttctt gggtttcaag tggttgcttg agctgggcaa
     2161 tcaagtcgtc caaggacttg ccttccgctt gcagttttgg taagagcata aggatcttag
     2221 ccgctacata ggtcccgtca tcgaggaagt aattttcctt aaaggcagca tgtccagatg
     2281 tttcgatagc caactggcaa tcaactccct cttgattggc taaaatagca cggttgatga
     2341 cattacggta gcctgaaata tagcgaattt gtttgcctcc caggctttct ataaagacct
     2401 taaggtgttc agtcgttggg gaattggtca caatgctggt tcctggatgt tcagctagga
     2461 caatctggct gagaacggca atcaggttgt tacgattgag aatttctcct gacttggtaa
     2521 ccagggcggc acggtcaacg tcggtatcaa agataatgcc taggtctgca ccttgcttca
     2581 agacagcctg acgaatgctt tccatagctt ccttgttatc tgggtttgga acatggtttg
     2641 ggaaggtgcc gtctgggtct aggaattgtg aaccagtggt atctgctccc aattctgcca
     2701 aaactttctc agcaaaaaat ccgcctgcac cgtttccagc atcgacgatg atattaagac
     2761 ctgtcagtgg tttttcttgt tcaccacagg cggtacgaat tttgccaact aagtcttggg
     2821 cataaggcgt aatcaaatct gctttggtca cacttccaag gtcagaagcc ggcaagtctt
     2881 cactactgga gaggatgaag tcaatatctt catgttctgc tccaccattt tccgaaaaaa
     2941 tcttaatgcc gttgaagtaa tgcggcagat ggctggcagt gatcatgaca ccagcatggc
     3001 acttgaactg aggatactgg gtgctcatga agagagctgg cgtggtagcc ataccaaagt
     3061 caatcagctg aacgcccaga cgaacggctt cttctgtaaa ggctgcgacc aaatctggac
     3121 cgctgaggcg gctgtctcga ccgataccga tggtcaattg gcctttttga taggtctgcg
     3181 ccagttccgg cttctgagtt agccaatgaa taagtccgcg aactacttcc tgggtggctt
     3241 gcggagtgag attgacagca tattcgtctg tagcgatagc aattccacga atatctgatc
     3301 cattttgcaa gacgtgatga tgggacatag taacctccta attcaaacta aatttagtat
     3361 atcatatttt caaagcggtt tcaaaatgaa aaaagcacag cttctac
//
LOCUS       DASGCC010000150         3321 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.151, whole genome shotgun sequence.
ACCESSION   DASGCC010000150 DASGCC010000000
VERSION     DASGCC010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.151"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(819..1667)
                     /locus_tag="U1404_001790"
     CDS             complement(819..1667)
                     /locus_tag="U1404_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="HEM5348705.1"
                     /translation="MTVIDGKALGVKLQAALAEKTARLKEEKGVVPGLVVILVGENPA
                     SQVYVRNKERSALAAGFKSEVVRVPDTISESDLLDLIERYNQDDEWHGILVQLPLPAH
                     ISEEKVLLAIDPDKDVDGFHPTNMGKFWSGHPVMIPSTPAGIMEMFKEYQIELEGKSA
                     LVIGRSNIVGKPMAQLLLDANATVTIAHSRTKNLPELARQADILVVAIGRGHFVTKEF
                     VKPGAVVIDVGMNRDENGKLIGDVKYDEVSEVASYITPVPGGVGPMTITMLMEQTYEA
                     CVRSAK"
     gene            complement(1797..2531)
                     /locus_tag="U1404_001791"
     CDS             complement(1797..2531)
                     /locus_tag="U1404_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019805208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5348706.1"
                     /translation="MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGK
                     STFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMREKMGMVFQQFNLFPNMTVLDNI
                     TLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
                     VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGII
                     VEDGTPEEVFEHTKEERTKDFLSKVL"
     gene            complement(2524..3213)
                     /locus_tag="U1404_001792"
     CDS             complement(2524..3213)
                     /locus_tag="U1404_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5348707.1"
                     /translation="MNFSFLPEYWAYFNYGAIVTLIIAFFSVFFGSILGVLLAFAQRS
                     KYKVLAWTANIYVWIFRGTPMIVQIMIAFAMTHFVAPTFQLGILTVDLTRLIPGIIVI
                     SMNSGAYVSETVRAGINAVPKGQLEAAYSLGIRPKQAMRYVIMPQAIKNILPALGNEF
                     VTIVKDSSLLSTIGVMELWNGAQTVQSTSYIPLTPLVFAASYYLIMTTVLTVIIQSFE
                     KKLNKGGQFHV"
BASE COUNT         1062 a          756 c          540 g          963 t
ORIGIN      
        1 ctctatcact cttatgtggg tatatgagtt ttatcctatt attactcaga taaggctagg
       61 agtaaaaccg ttccattagc agtttcactg aaaacgtccc acaatcacct aaaacattat
      121 aaacacaaaa tgaaagagag aaagaactaa acagataata ctcaatgaaa atcagactag
      181 gcgacgcaga tgcagataga actgaagttc atcaaatcaa gtcaacaacg tctgattttg
      241 attttcgaag agtataggca ataagtcttc attcgcagtt gttgagctga aataatctgt
      301 ctccaaacgt ttttactaca ctgggatgtt gttcaaactt tgagaaatag tactgttttt
      361 tatacagatt catttttgca tacaaaaaaa cctgatcaca cgatcaggct tttcaggaga
      421 ttatgaaaaa tatttaggat tgggtatagt ataaccaata ttactaaaag tcacatccgt
      481 cttaagactg atttattgaa tatgaccaat aaaataagta gtgtcgttta aaaatagact
      541 gattcatacg gggactgcac tcattactgt tagctaccaa aactacaagc ataatttaag
      601 aacctgtatt cacagttcaa cgcttctatt ctaaggctag tttttaagct actcatcatt
      661 agtttttttc aaaatacaat caatatcccg caaaaaaatt accttgatta gctaaatctg
      721 tctcttaata tgagtacttc gcttgtaaat acaggttcta agaacagggc tttaccaaag
      781 caggcatgga tatatttatt tttattaaac tctctatctt attttgcgct tctgacacaa
      841 gcttcatagg tctgttccat caacatggta atagtcatcg gaccaacacc acctggaact
      901 ggggtaatat aacttgccac ttctgatacc tcatcgtatt tgacatcacc gattagcttg
      961 ccattttcat cacgattcat accaacatca atcaccacgg cacctggttt aacaaattcc
     1021 ttggtcacaa aatgaccacg accaatggca acaacaagaa tatcggcctg acgagcaagc
     1081 tctggcaagt ttttggtgcg agaatgcgca atcgttacag tagcattggc atccaatagc
     1141 agctgtgcca ttggtttacc aacaatatta gaacgaccaa taactaaagc tgacttccct
     1201 tccagctcaa tctgatattc cttgaacatt tccataattc ctgctggggt agatggaatc
     1261 ataacaggat gacctgacca gaatttcccc atattagtcg gatgaaaacc atccacatcc
     1321 ttatctgggt caatggccaa caagaccttc tcctcgctga tgtgggctgg taagggcaat
     1381 tgcaccaaaa taccatgcca ttcatcatcc tgattatagc gctcaatcaa atccaacaag
     1441 tctgactcag aaatcgtatc tggaacgcga acaacctcac tcttgaatcc agcagctaga
     1501 gctgaccgct ccttattccg tacatagacc tgactagcag gattttcgcc aactaaaata
     1561 actacaagac ctggtaccac ccccttttct tcttttaatc gagcagtttt ctccgccaaa
     1621 gcagcctgca attttacacc tagtgctttc ccatcaatga ctgtcatacc tacactcctt
     1681 ttgttttttc tattataccc taaaattctc cgactgacta tacttgtaca aagtagacta
     1741 tagcatatag caaaaaactc cgaacaatgt cggagtcgta cttatttgtt catttattac
     1801 aagaccttag acaagaaatc cttggtccgt tcttccttgg tatgttcaaa gacttcttca
     1861 ggcgttccat cctccacgat gataccgcca tccataaaga taaccctgtc agctacctca
     1921 cgcgcaaatc ccatctcatg agtcacgata accatggtca tccccgactt ggccaaatcc
     1981 tgcattacag caagaacttc accaaccatt tcagggtcta gtgcagaggt cggttcatca
     2041 aaaagcagga catctgggtc catggccaga ccacgtgcaa tagcgatccg ttgttgctga
     2101 ccacctgaaa ggctttgtgg ataggcattt gccttatctg gcaatcctac cttttcaagt
     2161 aattccttag ccttcttctc agcctcatcc tttgcaattc cctttgtctt aataggtgat
     2221 aaagtaatgt tatctaatac cgtcatattt ggaaaaaggt tgaactgttg aaaaaccatt
     2281 cccatctttt cacgcatctt gaaaatatca tttgacttgt cagtaatatc aacaccttca
     2341 aatgtaacag ttcccttggt tggcacttct aagaggttca ttgtacgtaa gaaagtcgat
     2401 ttccctgacc ctgatggacc gataataacg acaacctgac cttgttgaat atctaaatca
     2461 attcctttta gaacctcatt ctttccgaag tacttatgta aatccttgat agaaataatc
     2521 gcattagaca tggaactgcc ctcccttgtt caactttttc tcaaacgact gaataatcac
     2581 tgttagcacc gttgtcataa ttagataata gctcgctgca aatacaagtg gtgttaaagg
     2641 aatataagaa gtggattgaa ctgtctgagc accgttccat aattccatca caccgatggt
     2701 tgacaaaagt gaactatcct taacaatagt cacgaattca tttcccaagg ctggaagaat
     2761 attcttgata gcctgcggca tgataacgta acgcatcgcc tgctttggtc taataccaag
     2821 cgaataagct gcttccagct gtccttttgg tacagcatta atacctgcac gaacagtttc
     2881 agatacatag gcacccgagt tcatcgaaat aacaatgata cctggaatca agcgcgtcaa
     2941 atcaaccgtc aaaattccta gctgaaaagt tggtgctaca aaatgtgtca tcgcaaaagc
     3001 aatcataatc tggacaatca tcggtgtccc acggaaaatc cagacataga tattggcagt
     3061 ccaagctaaa actttatact tactacgctg agcaaaggca agtaacacac ctaaaatact
     3121 accaaaaaat actgagaaaa atgcaataat gagggtaaca attgccccat aattaaaata
     3181 agcccaatac tcaggcaaaa aagaaaaatt cattcatctt actccaattc tgtcatttag
     3241 agtctattat accatttttg aatatttatg caatactttt gtttataata ttcaatttac
     3301 acaagaaaaa agcaccctta g
//
LOCUS       DASGCC010000151         3256 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.152, whole genome shotgun sequence.
ACCESSION   DASGCC010000151 DASGCC010000000
VERSION     DASGCC010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.152"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            39..743
                     /locus_tag="U1404_001793"
     CDS             39..743
                     /locus_tag="U1404_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM5348708.1"
                     /translation="MKIHVVNNQVEGATVALDILREKLNGDAKVLGLATGSSPLEFYR
                     LIRESDLDFSNVTSVNLDEYVGLGEESDQSYIHFMKENLFNDKPFKKSYLPNGLATDV
                     VAETERYNKILAEHPVDFQILGIGRNGHIGFNEPGAPFDGQTHLVELAPSTIEANARF
                     FDNPEDVPKQAISMGIANIMAAKTIVLMAYGQEKADAIKATVEGAVTEDVPASVLQNH
                     DNVILILDQAAASKLV"
     gene            1080..>3256
                     /locus_tag="U1404_001794"
     CDS             1080..>3256
                     /locus_tag="U1404_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEM5348709.1"
                     /translation="MKLKKLWVYLLTPLLVLFGSGVFANSVKAKELNNVITDVKFWAV
                     AANIEKKPESNDVYDFYVGNDYRFVVDFDLSAYDSKLSNGDTFSFTIPAPFPVTATTF
                     NLIDDSTKIAIGDANVVSNSTGGGGKATITIKNLDEYLKKKNADVVKGVKGTFYINFK
                     FTEAMEQQIISFSSTETKGELSKKIRILKGEKVDFSKEFGKTNYTKIGGTLIQSAWSS
                     QALGKKGDWLHDWAVRLNQKQAAYDTLVVHDTVNMVDYSPMQFIPEKFKVIAGWYDSE
                     YRLLDQAELTKDQYTLTFNESYTDFVLTIPNAKSIQKNGKPAAFRIEYKTTAPADGTM
                     VANKVEVSGNGTLLTIDDDRTDISQEIVANSRITSGGTIQLTTGYRITLYKVDSKTQN
                     RLSGAKFKITPPVGATTAKEEVVTTNADGVAQSPIYTEADVKLGEFTITEVEAPEGYE
                     LDPTPIKVTVGKAGVIKTIKNKRYTTTAQITARKRLLGRELNAGEFEFVLTDQQGREI
                     ETVKNDLYGDIKFKELTFDKEGNYNFTIKEKNANTSDENGITYDEQPVEVAVVVSKDS
                     TGKLTSTVSYANDDNEFNNFYTPSPVDVELEVTKKLTGRKLIEGEFEFVLTENRFPDP
                     TPSRMPARNTVIPTENIVRQKVTNTADGKVKFAPITYDHRGAYQYTIEETNAGKTIDG
                     VTYDSLKVEVTVVVTDDGKGRLVAEVFYSKNTEFNNIYKTSKA"
BASE COUNT         1123 a          513 c          689 g          931 t
ORIGIN      
        1 agaaaaacaa taaatggtat agaccaaaga ggggtgttat gaaaattcat gtagtaaaca
       61 atcaagttga aggagcaact gtagcattag acattttgag agaaaaattg aacggagatg
      121 ccaaggtatt aggtttggca acaggctcca gtccgttaga attttacaga ttgattcgtg
      181 agtcagattt agacttttcg aatgtgacat ctgtaaactt ggatgagtat gttggtctag
      241 gtgaggagag cgaccaatcc tatattcatt ttatgaagga aaatcttttc aatgacaaac
      301 cgtttaagaa atcttattta ccgaatggtt tggcgacaga tgtagttgct gaaacagaac
      361 gttacaataa aattttggct gaacatccgg ttgatttcca aattttgggt atcggtcgca
      421 acggccatat cggtttcaac gaaccaggtg ctccatttga tggtcagact catctggttg
      481 aattggcgcc atcaaccatt gaagccaacg cccgcttctt tgacaatcca gaagatgtac
      541 caaaacaagc tatctccatg ggcatcgcca acattatggc agccaagacc attgttctca
      601 tggcctatgg tcaggaaaaa gctgacgcca ttaaggcgac tgtggaaggg gcagtgacag
      661 aagatgtccc agcaagcgtc ctccaaaacc atgacaatgt catcctcatc ctcgaccaag
      721 cagcagcgag taaattagtg tagtatgttg taaacgatta ttcttagaca taaagttggt
      781 tgtaacagta caataagtat aatttctgaa tgaatctagg ttctttttcc attatgaatt
      841 tgacaaaaat tgtgaaaaaa gatacaataa aacttgagga atgactcgaa tgaaaataag
      901 aatatctgaa tggattgttt gttgtttgaa tagtaatgag tccctattat aaaaaattaa
      961 gttttttcat tgttatgata gaaaaactta aaaatagttg caaaaggatg tgatttttat
     1021 agtgtgagtt tgtatatttt gtgtaagaga aaacgtttta gaaaggaaga tagagaatta
     1081 tgaaattgaa gaaattgtgg gtctatctat tgacaccact cttggtatta tttggttcgg
     1141 gtgtatttgc taatagtgtg aaagccaaag aattgaataa tgttattacg gacgttaagt
     1201 tttgggccgt agctgcaaac attgaaaaga aaccggaatc taatgatgtt tatgactttt
     1261 atgttggtaa tgattatcgg tttgtagtcg actttgattt aagtgcttat gatagtaaac
     1321 tttcaaatgg cgatacattt tcgtttacaa ttccagctcc atttcctgtt actgctacaa
     1381 catttaattt aattgatgat agtacaaaga ttgctatagg tgatgcgaat gttgtttcga
     1441 atagtacagg tggcggagga aaagctacaa tcactataaa aaatcttgat gagtatttaa
     1501 aaaagaaaaa tgctgatgta gtaaaaggag ttaaaggtac attctatatt aacttcaagt
     1561 ttacggaagc aatggaacag caaatcatta gcttttcctc tacagagact aaaggagaat
     1621 tatcaaagaa aattcgaatt ttgaagggtg aaaaagttga tttttcgaaa gaatttggaa
     1681 aaactaatta tactaaaata ggtggaacat taatccaaag tgcttggtca tcacaagcgt
     1741 taggtaagaa aggtgactgg ctccatgatt gggcagttcg gttaaatcaa aaacaagccg
     1801 cttatgatac acttgtggtg catgatactg tcaatatggt tgactactct ccaatgcagt
     1861 ttattcccga aaaatttaaa gtcatagctg gttggtatga tagtgaatat agactgttag
     1921 atcaagcaga gttgacaaaa gatcagtaca cccttacgtt taatgaatct tataccgatt
     1981 ttgttctcac tattccaaat gctaagagta ttcaaaaaaa tggcaaacca gctgcgtttc
     2041 gaattgaata caaaacaaca gctccagcag atgggacaat ggttgctaac aaggttgaag
     2101 tgagtggcaa tggtaccttg ttgacaattg atgatgatag aacagatata tcacaagaga
     2161 tagttgctaa ctcacgcata acctcgggag gaacaatcca acttactaca ggataccgta
     2221 tcacactcta caaagtggat agtaagacac aaaaccgcct ttctggggcg aaattcaaaa
     2281 ttacccctcc tgtaggtgcg actactgcaa aagaagaagt tgtgacaaca aatgcagacg
     2341 gcgtggcgca atctcctatt tacactgaag cagatgtgaa attaggtgag tttactatta
     2401 ctgaagtgga ggctcctgag ggttatgaac tagatccaac tccaattaaa gtaactgttg
     2461 gtaaagctgg cgtcatcaag actattaaaa ataaacgcta tacaaccaca gcacaaatta
     2521 ctgcaagaaa aagattatta ggtcgtgaat tgaacgcggg agaatttgaa tttgtcttga
     2581 ctgaccaaca gggtagggaa attgagactg ttaagaacga tttatacggt gacatcaagt
     2641 tcaaggaatt gacatttgat aaagaaggaa attataattt tactatcaag gagaagaacg
     2701 ctaatacatc agatgaaaac gggattactt acgatgaaca gcctgttgaa gtggctgtcg
     2761 tagtatcaaa ggattcaact ggaaaattga cttcaactgt ttcttatgcg aatgatgata
     2821 acgaatttaa taacttttat accccatctc cagtagatgt agagcttgaa gtgactaaga
     2881 agttgacagg tcgtaagctc attgaaggtg agtttgaatt tgttttgaca gaaaatcgtt
     2941 tcccagatcc tactccttcg agaatgcctg caagaaatac tgttattcct acagaaaata
     3001 ttgtacgtca aaaagtgact aatactgcag atgggaaagt gaaatttgcc cccatcacct
     3061 atgatcatcg aggagcttat caatacacaa ttgaagaaac caatgcaggt aaaacaattg
     3121 atggtgtgac atatgatagc cttaaagttg aagtgacagt ggttgtaacc gatgatggta
     3181 aagggagact cgttgctgag gttttctatt cgaaaaatac tgagttcaat aacatctaca
     3241 aaacaagcaa agccaa
//
LOCUS       DASGCC010000152         3254 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.153, whole genome shotgun sequence.
ACCESSION   DASGCC010000152 DASGCC010000000
VERSION     DASGCC010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3254
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.153"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(191..1276)
                     /locus_tag="U1404_001795"
     CDS             complement(191..1276)
                     /locus_tag="U1404_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000040814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM5348710.1"
                     /translation="MSKLHHVKSYLEANKMDLAIFSDPVSIYYLTGYHSDPHERHMML
                     FVMPDHDSLLFLPALDVERAVATVDFPVAGYMDSENPWQIIKSKLPQKSFSVICAEFD
                     NLNLTRYHGLQSIFSQPFSDITPLINTMKLIKSRDEIEKMLVAGEFADKAMQVGFNNI
                     SLNVTETDIIAQIEFEMKKQGISKMSFDTMVLTGDNAANPHGIPSTNKIENNALLLFD
                     LGVEALGYTSDMTRTVAVGKPDQFKKDIYNLTLEAHMAAVNMIKPGVTAGEIDYAARS
                     VIEKAGYGEYFNHRLGHGLGMSVHEFPSIMEGNDLVIEEGMCFSVEPGIYIPGKVGVR
                     IEDCGYVTKNGFEVFTKTPKELLYFEG"
     gene            1487..2491
                     /gene="ccpA"
                     /locus_tag="U1404_001796"
     CDS             1487..2491
                     /gene="ccpA"
                     /locus_tag="U1404_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HEM5348711.1"
                     /translation="MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLE
                     VIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLAN
                     SDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
                     SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEG
                     LVFESKYKYEEGYALAERILNAGATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITS
                     DDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK
                     "
     gene            complement(2923..>3254)
                     /locus_tag="U1404_001797"
     CDS             complement(2923..>3254)
                     /locus_tag="U1404_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5348712.1"
                     /translation="VETSEKQMPVNEKDNAVTPERQIANKEKENIETSKKQIPVNGNN
                     QNGTVGENSNTKPTTEKTDKQETSTFKTETAKQILPVTGEKGSLWLLTSGIIGLAIAL
                     FTRKRKL"
BASE COUNT          987 a          616 c          669 g          982 t
ORIGIN      
        1 agttacacct tctcaagatt tggttagata caaataaata aagcatacga ttatgaaacc
       61 cctcggtaac ataatcgtat gcttttattt taatacttgg cttcacagca cttctatttt
      121 aatgttcttt gaagattaaa atgaacagtt gtcaacgagc tttgatgagt gaaaaaacga
      181 ttggtcccca ttacccttca aaatacagta attctttcgg agtctttgtg aatacttcaa
      241 agccattttt ggtaacgtaa ccacaatcct cgatacgaac accaactttt ccagggatgt
      301 aaatacctgg ttcgacagag aaacacatac cttcttcgat gactaaatca ttgccttcca
      361 taattgatgg gaattcatgg acactcattc ccaaaccatg accgagtcgg tggttgaagt
      421 actcgccata acctgctttt tcaatcacag agcgagcggc atagtcaatc tcaccagcag
      481 tcacaccagg cttaatcata ttgaccgcgg ccatgtgagc ctccagagtc aagttgtaaa
      541 tatctttttt aaactgatca ggtttaccga cagcgacagt ccgtgtcata tcagacgtat
      601 agcccaaagc ttccacgcct aggtcgaaca atagcagagc gttattctcg attttatttg
      661 ttgagggaat accgtgtgga tttgcggcat tgtcgcctgt taagaccatg gtgtcaaagc
      721 tcatttttga gatgccttgt ttcttcattt caaattcaat ctgagcaata atatcagttt
      781 cagttacgtt gagggagata ttgttaaaac caacctgcat agccttatcc gcaaactctc
      841 cagcaaccag cattttttca atttcatcac gcgacttgat caatttcata gtattaatca
      901 gaggtgtaat gtctgaaaat ggttggctaa agatagactg aagaccatgg tagcgggtta
      961 aattcaaatt atcaaattct gcacagatta ctgagaaaga tttctgtggc aatttgctct
     1021 tgataatctg ccatggattt tctgagtcca tatagccggc tacaggaaag tcaacagttg
     1081 caactgcacg ttctacatcc aaggcaggga gaaagagtag tgagtcgtgg tcaggcataa
     1141 caaagagcat catgtggcgc tcatgaggat cgctatgata gccagtcaga taatagatgc
     1201 taactggatc agagaagatg gccaagtcca ttttgttggc ttctaagtag gatttaacat
     1261 gatgtaattt tgacatagtg gagacctttc tagcatgtag tggtaaaaaa aagtgaaatt
     1321 ttcgtttatt atatagacta ttgtttcaaa aaatgaaaaa aattgcaagt attatcaaaa
     1381 aaatagagtt tatctcttga aagtggtttc aaaaagtgat acactatact tgagtgaaag
     1441 cgtaattttc atagaactag aactattgaa agggagtaca taacgtatgt taaacactga
     1501 cgatacggta acgatttatg acgttgcccg cgaagcaggt gtatccatgg cgacagtatc
     1561 gcgcgtggta aatgggaata aaaacgtaaa ggaaaatact cgtaaaaaag tattagaagt
     1621 catcgaccgt ttggattatc gtccgaatgc tgttgcacgt ggcttggcca gcaagaagac
     1681 taccactgtg ggggttgtga ttccaaatat tgctaatgct tattttgcaa ccttggccaa
     1741 aggtatcgat gatattgccg atatgtacaa atacaatatc gtcttagcaa acagtgatga
     1801 aaatgatgag aaagaaatca atgtggtgaa taccctattc tcaaaacagg tggacggaat
     1861 cattttcatg ggctatcatt tgacagacaa gattcgtgcg gagttttcac gctcacgtac
     1921 accgattgtt ttagctggta ccgtggactt ggagcaccaa ttacctagcg tcaatattga
     1981 ctacgctgcc gctagtgttg atgcagtcaa tctattagct aagaacaaca agaaaattgc
     2041 ctttgtatca gggccgcttg tagatgacat caacggtaaa gttcgttttg caggctacaa
     2101 acaaggcttg aaggacaacg gaatcgagtt taacgaagga ttggtttttg aatccaagta
     2161 taaatacgag gaaggctacg ctctagcaga acgtattttg aatgccggag caactgcagc
     2221 ttatgttgca gaagatgaga ttgctgctgg tttattgaat ggtgtcagtg atatgggcgt
     2281 caaggttcca gaagactttg aaatcattac aagtgatgat tccctagtga ctaagtttac
     2341 ccgtccaaac ctgacctcta tcaatcagcc actatatgat attggtgcaa ttgctatgcg
     2401 catgctcacc aaaatcatgc ataaggaaga gttggaaaac cgtgaggtag ttcttaacca
     2461 cggaatcaaa gtacggaaat caactaagtg ataaatatgg gagtagccgg ataagatatc
     2521 ttattactcc gcaccctcac tctatcaaac attataatca tttggtttat cttttattac
     2581 ttcgacgagc gaggaaatat ttccaaccta gaacagcctt taggctgttc tagcaacttg
     2641 tagctattga ggcaaacttg cttcgactta tctccagcct tcaaaggttc ggagaacctt
     2701 tgaagcgagt actaaaagca aacaaaatgg ctatactaac cgaaaactaa aagattataa
     2761 aaaataaata taaagccctc gctagatgta taagcttagc gagggctttg tggttgattt
     2821 taagtctgtc acactctgta agttgtgcga gatgttgatg cgaatctaga gaagcagtac
     2881 tgggcttgtt ctcatccttt agaactgtat cagttaggtg aattataatt tacgtttacg
     2941 tgtaaacaac gcaattgcaa gcccgataat accacttgtc aataaccata aacttccttt
     3001 ctcaccagtt actggtaaga tttgcttagc agtttcggtt ttaaatgttg aagtctcctg
     3061 cttgtctgtt ttttcagttg ttggtttagt gtttgaattt tctccgactg taccattttg
     3121 gttgttccca ttaacaggta tctgtttttt agaggtttcg atattttcct tctctttatt
     3181 agctatttgc ctttcaggtg ttacggcatt gtccttctca ttaacaggca tctgtttttc
     3241 agaggtttca acat
//
LOCUS       DASGCC010000153         3240 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.154, whole genome shotgun sequence.
ACCESSION   DASGCC010000153 DASGCC010000000
VERSION     DASGCC010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.154"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..893
                     /locus_tag="U1404_001798"
     CDS             <1..893
                     /locus_tag="U1404_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5348713.1"
                     /translation="SKQLDSMLGKELTDYELLYIDDGSNDMTLELIETIAAQNTKVRY
                     ISLSRNFGREGGILAGFKYATGDAVMVMDGDLQHPPYLIPQFVEAYNDGYDIVSGQRD
                     RVGESKFVSFFAKMFYEISKHSMEVELTDGKSELRLLSKRAVETFVALPEYNRFNKGL
                     YEWIGFKEKVITYSNQVRVAGISKFGFKKSFNYAVQGMISFNDKPLRICIQLGLLSLG
                     LALLYLIMEFIRYFTHPEHIVSGYFTTIAAIILFGGVQLVSIGILGEYIGKIYYEVKK
                     RPHFIVEKTNIEQAEKDRVG"
     gene            908..>3240
                     /locus_tag="U1404_001799"
     CDS             908..>3240
                     /locus_tag="U1404_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM5348714.1"
                     /translation="MKLYQRLLNYIEANRKMSIYIVSSTLPMLIMLVVWLCIGIYPFG
                     SKSLMAVDFGQQYISFYGFLKSTILSGDWSGFLYSFTKSLGGDMLGVLAYYLLSPFNL
                     IYVITPLSHFSLAVFLTIWLRYGAIGMSFAYLLIKRYRGLDATAWLVPLMSTAYALSG
                     MLVSYQMNPIFYDAMIMLPLVIVALEELLDGGKPFRYIWTLALTIFTQFYMGYMISLF
                     VAMYACFYVSPRLSIVGDWRQKLRNFFSPLLKAFIYSVIGVGLVAVLLYPVVLNLMQS
                     KGQVGSGMEFSFALQINPFDILSKLTIGGFDTSSGWSAGPNLPNIYIGALALFGFILY
                     FRFAETHRNQKIGACIILVIFFVSFINEFVSKIWHMGQNPAGFFFRFSWILSFYMILL
                     AFQTFKSKPKISYRSFIIGLSILIAAAVYVLSQSYSYISKVQPMIVTSFVRQYLLLIL
                     CFVVLLIAGILFFCWKKWQWSQKKVIGFTAILTIVGMTSIILLQQGYFLTQVVLTVIV
                     WIVILLSFVLQQNRLTWTTLIIVTIFELGYNAYLSQSTFFYADAYKFRDATISVKRVT
                     DSIRDNTETKFYRIGSSFSYSKTAPTLLSYPGLSSFSSSLERSTMDLFSYLGDVGVNA
                     ATQYANGTALTDALYGVRYYMDIKEYTQEEVENNPQKMYFTRHSKRFDLAEYYTNAVY
                     EDGRYIVYENPNVFSIAFGTNTLVQNIKFGFNNPVANQNIILNSMAGDTKDQVGYFQT
                     FGFSGFETQNMEETTNDKGEIIYNRIDKNQPGIIRYK"
BASE COUNT          941 a          462 c          662 g         1175 t
ORIGIN      
        1 tgtctaagca gctggatagt atgttaggaa aagagttgac agattatgag ttgctttata
       61 ttgatgatgg ctctaatgat atgacacttg agttgattga aacaattgct gcccaaaaca
      121 ctaaggttcg ttatattagt ttaagtagaa attttggccg tgagggaggt attttagcgg
      181 gttttaaata tgcaacagga gatgcagtta tggtaatgga tggagatctc caacatcctc
      241 cttatcttat tcctcagttt gttgaggcat ataatgatgg atatgatatt gtgagtggcc
      301 agcgagatcg agttggtgaa tcaaaatttg taagtttttt tgcaaaaatg ttttacgaaa
      361 tatcaaaaca ttccatggaa gtagaattga cggatggaaa atcagaatta cgtttgttaa
      421 gtaagcgtgc tgttgaaact tttgtagcat tgcctgagta taaccgattt aataaaggac
      481 tatacgaatg gataggtttt aaagaaaaag taattacata tagtaaccaa gttagggtgg
      541 ccggaatcag taagtttggc tttaaaaaat cctttaatta tgcagttcaa ggcatgattt
      601 cgtttaatga taagccactg aggatttgca tacagttagg tttactcagt ttaggacttg
      661 ctttacttta tcttataatg gaatttattc ggtattttac acatccggaa catatagtta
      721 gtgggtattt tacaaccatt gcagctatta ttctttttgg aggtgttcag ctagtttcta
      781 ttggtatttt gggagaatac attggtaaaa tatattacga agtcaaaaag cgtccacact
      841 ttatagttga gaaaacaaat attgaacagg cagagaaaga tagggtagga taaaaatgag
      901 gatatttatg aaattatatc aaaggttgct caattatatt gaagcgaatc gaaagatgag
      961 tatctatatt gtcagtagta cactgcctat gcttattatg ctggttgtgt ggctatgcat
     1021 aggtatatat ccttttggaa gcaaaagtct tatggcggtt gattttgggc aacagtatat
     1081 tagtttttat ggttttttga aatcaacgat tctttcgggg gattggtctg gattcttgta
     1141 ttcctttact aaatcgctag gaggggatat gctcggagta ttagcctatt atttgctaag
     1201 tcctttcaat cttatttatg tcattactcc attaagtcat tttagtttag cagtattttt
     1261 aaccatttgg ctccgttacg gagcgattgg gatgagtttt gcatatcttc ttattaagcg
     1321 ttatagaggt cttgatgcta ctgcatggct ggtgccactt atgtcaacag cctatgcatt
     1381 atctggtatg ttagtttctt atcagatgaa cccaatcttt tatgatgcaa tgattatgtt
     1441 gccactagtg atcgttgcgc tagaggagtt attggatggt ggtaagccat ttcgttatat
     1501 atggactttg gcactgacca tctttactca attttacatg ggttacatga ttagtctctt
     1561 tgttgccatg tatgcctgct tttatgtatc ccctcgctta tcaattgttg gggattggag
     1621 acagaaatta cgtaatttct tttcccctct tttgaaggct tttatttatt ctgtcatagg
     1681 agtagggtta gtagctgtat tgctctatcc ggtggtatta aaccttatgc aaagtaaggg
     1741 gcaagtaggc tcgggtatgg agtttagctt tgctttacaa attaatcctt tcgatatttt
     1801 atcaaaattg accattggtg gttttgatac gagttctggt tggtcagccg gacctaattt
     1861 gccaaatatt tatattgggg cgctggcttt atttggtttt attctttatt ttagatttgc
     1921 tgagacgcat cgtaatcaaa aaatcggagc ctgtattata ttagtaatct ttttcgtttc
     1981 ctttattaat gagtttgtta gtaagatttg gcatatgggg cagaatcctg caggtttctt
     2041 tttccgattt tcttggattt tatcctttta tatgattttg ctggcgtttc aaacctttaa
     2101 atcaaagcca aagatttcat acagaagttt tatcattgga cttagtatac ttatcgctgc
     2161 agcagtttat gttctgagtc aaagctatag ctatatttct aaagtgcaac ctatgattgt
     2221 aacaagtttt gttcgacaat atttgttatt gattctgtgt tttgtggttt tattaatagc
     2281 ggggatactt ttcttctgtt ggaaaaaatg gcagtggtct caaaaaaaag taattggttt
     2341 tacggctatt ttgacaattg tagggatgac gagtatcatc ctattacaac aagggtattt
     2401 tctgactcag gtagtattga cagttattgt ctggatagta atcttattat cttttgtttt
     2461 acagcaaaat cgtttgacgt ggacaacatt gattatagtt actatttttg aacttgggta
     2521 taatgcgtat ttatctcagt caactttttt ctacgcagat gcttataaat ttagagatgc
     2581 aacaatatct gttaagcgtg tgaccgacag tatccgggac aatactgaaa ctaagtttta
     2641 tcgtataggc tcaagttttt cttattcaaa aacggcacca acattattat cttatccagg
     2701 attaagtagt tttagttcta gtttggagcg ttcaacaatg gatttgtttt cttatttagg
     2761 tgatgtgggt gtaaatgctg ctactcagta tgctaacgga acagcactga cagatgcact
     2821 ttatggcgta cgttattata tggatattaa agagtataca caagaagaag ttgaaaataa
     2881 tccacaaaaa atgtacttta cacgccattc aaaacgtttt gatctcgcag aatattatac
     2941 aaatgcagtc tatgaagatg gtcgttacat cgtttatgaa aatccgaacg ttttctcaat
     3001 tgctttcgga actaacacac ttgttcaaaa cattaagttt ggtttcaata atcctgtagc
     3061 aaaccaaaat attattctta attctatggc gggagataca aaagaccaag ttggctattt
     3121 tcaaactttt ggtttttcgg gatttgaaac acaaaatatg gaagagacaa caaatgataa
     3181 aggggaaatt atttataatc gaattgataa aaatcaacct ggaattattc gttataaaat
//
LOCUS       DASGCC010000154         3163 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.155, whole genome shotgun sequence.
ACCESSION   DASGCC010000154 DASGCC010000000
VERSION     DASGCC010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.155"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            236..1784
                     /locus_tag="U1404_001800"
     rRNA            236..1784
                     /locus_tag="U1404_001800"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            1838..1910
                     /locus_tag="U1404_001801"
     tRNA            1838..1910
                     /locus_tag="U1404_001801"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1871..1873,aa:Ala,seq:tgc)
     gene            2213..>3163
                     /locus_tag="U1404_001802"
     rRNA            2213..>3163
                     /locus_tag="U1404_001802"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          918 a          640 c          892 g          713 t
ORIGIN      
        1 tcttgaggga ctggttaaca gaggaacgaa aaaaagtttc aaaaaagtgt tgacaaagtt
       61 cacaagaaat gataaactaa gatagttgtc gcgagaacgt gataacgaca agacctttga
      121 aaattaaaga agacgaacca aacgtgcagg gtgatttatc taaggataaa tcgtcaatga
      181 caaaacaaaa caataaaacg gaaagctagc aatagcttga gtttgaatca aaacttttta
      241 tgagagtttg atcctggctc aggacgaacg ctggcggcgt gcctaataca tgcaagtaga
      301 acgctgaagt ctggtgcttg cactagacgg atgagttgcg aacgggtgag taacgcgtag
      361 gtaacctgcc tcatagcggg ggataactat tggaaacgat agctaatacc gcataacagt
      421 atttaccgca tggtagatgc ttgaaaggag caactgcttc actatgagat ggacctgcgt
      481 tgtattagct agttggtgag gtaacggctc accaaggctt cgatacatag ccgacctgag
      541 agggtgatcg gccacactgg gactgagaca cggcccagac tcctacggga ggcagcagta
      601 gggaatcttc ggcaatgggg gcaaccctga ccgagcaacg ccgcgtgagt gaagaaggtt
      661 ttcggatcgt aaagctctgt tgtaagagaa gaactgtgag aagagtggaa agtttctcac
      721 ttgacggtat cttaccagaa agggacggct aactacgtgc cagcagccgc ggtaatacgt
      781 aggtcccgag cgttgtccgg atttattggg cgtaaagcga gcgcaggcgg tttgataagt
      841 ctgaagtaaa aggctgtggc ttaaccatag tacgctttgg aaactgtcaa acttgagtgc
      901 agaaggggag agtggaattc catgtgtagc ggtgaaatgc gtagatatat ggaggaacac
      961 cggtggcgaa agcggctctc tggtctgtaa ctgacgctga ggctcgaaag cgtggggagc
     1021 gaacaggatt agataccctg gtagtccacg ccgtaaacga tgagtgctag gtgttgggtc
     1081 ctttccggga ctcagtgccg cagctaacgc attaagcact ccgcctgggg agtacgaccg
     1141 caaggttgaa actcaaagga attgacgggg gcccgcacaa gcggtggagc atgtggttta
     1201 attcgaagca acgcgaagaa ccttaccagg tcttgacatc ccgatgaccg ccctagagat
     1261 ggggtttctc ttcggagcat cggtgacagg tggtgcatgg ttgtcgtcag ctcgtgtcgt
     1321 gagatgttgg gttaagtccc gcaacgagcg caacccctat tgttagttgc catcattcag
     1381 ttgggcactc tagcgagact gccggtaata aaccggagga aggtggggat gacgtcaaat
     1441 catcatgccc cttatgacct gggctacaca cgtgctacaa tggctggtac aacgagtcgc
     1501 aagtcggtga cggcaagcta atctcttaaa gccagtctca gttcggattg taggctgcaa
     1561 ctcgcctaca tgaagtcgga atcgctagta atcgcggatc agcacgccgc ggtgaatacg
     1621 ttcccgggcc ttgtacacac cgcccgtcac accacgagag tttgtaacac ccgaagtcgg
     1681 tgaggtaacc ttttaggagc cagccgccta aggtgggata gatgattggg gtgaagtcgt
     1741 aacaaggtag ccgtatcgga aggtgcggct ggatcacctc ctttctaagg aaatggaaac
     1801 ctgtacgtca gtcttcttta attttgagag gtcttgtggg gccttagctc agctgggaga
     1861 gcgcctgctt tgcacgcagg aggtcagcgg ttcgatcccg ctaggctcca ttaggataga
     1921 aatcctacta aactgaataa cagtgaagtt gaattcacga ctaacttctt aggaaaatag
     1981 ataatcttcc ttgtgtgcaa gacacacaat gtcagattcc taattttcta cagaagtttc
     2041 gcagaagcga ccgtcgttca tatcctaaac ttgtccattg aaaattgaat atctatcaaa
     2101 cattcctaaa cgtatgtaaa aatacgtata gaaatagtaa caagaaaata aaccgaaaac
     2161 gctgtgaata tttaatgagt tttctaattt ttgaaaaaaa ttaggttaat aaggttaagt
     2221 taataagggc gcacggtgga tgccttggca ctagaagccg atgaaggacg tgactaacga
     2281 cgaaatgcct tggggagctg taagtaagca atgatccagg gatgtccgaa tgggggaacc
     2341 cggcaggtaa tgcctgtcac tcactactgt taaggtagtg aagaggaaga cgcagtgaac
     2401 tgaaacatct aagtagctgc aggaagagaa agcaaaagcg attgccttag tagcggcgag
     2461 cgaaacggca ggagggcaaa ccgaggagtt tactcctcgg ggttgtagga ctgcaatgtg
     2521 gacttaaaga gtatagaaga actacctggg aaggtaggcc aaagagagta atagcctcgt
     2581 atttgaaata ttctttatac ctagcagtat cctgagtacg gcgagacacg cgaaatctcg
     2641 tcggaatccg ggaggaccat ctcccaaccc taaatactct ctagtgaccg atagtgaacc
     2701 agtaccgtga gggaaaggtg aaaagtaccc cggaagggga gtgaaataga acctgaaacc
     2761 gtgtgcctac aacaagttcg agcccgttaa tgggtgagag cgtgcctttt gtagaatgaa
     2821 ccggcgagtt acgatatgat gcgaggttaa gttgaagaga cggagccgta gggaaaccga
     2881 gtcttaatag ggcggattag tattatgtcg tagacccgaa accatgtgac ctacccatga
     2941 gcaggttgaa ggtgcggtaa gacgcactgg aggaccgaac cagggcacgt tgaaaagtgc
     3001 ttggatgact tgtgggtagc ggagaaattc caaacgaact tggagatagc tggttctctc
     3061 cgaaatagct ttagggctag cgtcgacatt tgagaatctt ggaggtagag cactgtttgg
     3121 atgagggggc catctcggtt tactgatttc agataaactc cga
//
LOCUS       DASGCC010000155         3163 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.156, whole genome shotgun sequence.
ACCESSION   DASGCC010000155 DASGCC010000000
VERSION     DASGCC010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.156"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            35..3118
                     /locus_tag="U1404_001803"
     CDS             35..3118
                     /locus_tag="U1404_001803"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922092.1"
                     /note="This family includes IgM or IgG-cleaving cysteine
                     proteases; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IdeS/Mac family cysteine endopeptidase"
                     /protein_id="HEM5348715.1"
                     /translation="MNIQERFSLRKSAVGLVSVSLLCAIYTSTVAADTVVTGVNEIIE
                     ESQVKDEVSIESEKNESLDGSNIEIVEEIADNIPSPVIAEGEVAVEMKVDRGTENVVS
                     RNDTEVTTSEQNQIEVTETKEILNQTSYQTESGEQRQIIWAHGITPPAMEQSGGFVKE
                     KYGDYLNYTAPFKAGKGYYDTNKSLNASFIDLNLCFAAVSSNMVHWWLEQNSSYVERY
                     LKEKKGTVNVGENYAITDLRRYIDSFQDQQNSRVFDMFKTYYGYRTNGFVSDALVDLF
                     INGYKPKVQGGVNLEDSQLVPDSRGGFFYDVFKEKKLTNRIFSGSYERFGEDVRTVLE
                     SKGLLGLTYRTLGYATHIVTVWGAEYDNQGKIRAVYITDSDDQQEQIGLKRMGITRDA
                     SGNPRLNNHVKNNSAGALLDYVHTIRLGQDLWEEYFNPFAKAKEIASQILADRKKALV
                     LSIQGQSELPESMRLIYLEKLNNLYNQGILSIQKTESSEMLSGALENGLNSLKSLDFP
                     ISEVGNALAPDLSVGDRSTVSDVDSLSSQETSSTNLEADTENAGIIADGTNQLHFPVE
                     AQTTSSVEAEGDNVFEQEADTLPIIIENKDEFGSELSGNMQTSETDSLVVAVEEDVKN
                     DEVDQVEKLLESEKVENQSSELLSDTLIVEGANDKEEDRVEAVVSEQPDSIPHQNVEI
                     SPVEPMNVETESVVTPINDAATPHGFPMYIDNSVTESVATPLEKDSIQAGETEIAEPT
                     SSESTSVEAELVDNSEIHSATSSVTPRGSSAYADSSTTESVATLLEKDSIQAGETEIA
                     EPTSSKSTNVEAASVDNSEIHADTSLTAVSSVNLDNPVIEPVAIPLIGSKRDTNAEVE
                     VSSLSKREVRKPNTEGLISVQSKVIKKELLESSLVEAGSPLLEATIAQSSNSNSTEIG
                     MSYQNTVLLESNNTERQVSKAEIVIEHKETELVETVSSASEPVVLVENISQTSNNTIE
                     SGKNMGVQSQAGAKQILGIEQSSKVSTPTSRQIMGVGLLTLVLGSALGLLKKRRK"
BASE COUNT         1053 a          540 c          691 g          879 t
ORIGIN      
        1 ttgttcaaag aatataaata taaacggagg aaagatgaac attcaagaac gattttcttt
       61 gagaaaatcc gcggttggct tggtctcagt ctctttgcta tgtgctattt atacatccac
      121 tgttgctgcc gatacagttg ttacaggagt gaatgaaata attgaagaat cacaagtcaa
      181 ggatgaggta tctattgaat cagaaaaaaa tgaatcccta gatggttcta atattgaaat
      241 tgtagaggaa atagcagaca acatcccatc acctgttatc gctgaagggg aagtagcggt
      301 agagatgaaa gttgacagag ggaccgagaa tgtagtttct agaaatgata cagaagttac
      361 gacgagcgag caaaatcaga tagaggttac tgagacaaaa gaaattttga atcagaccag
      421 ttatcaaacg gagagtggcg agcaacgaca aattatatgg gcccatggaa ttactcctcc
      481 tgcaatggaa caaagcggtg gttttgtaaa ggaaaagtat ggagactatt taaactatac
      541 agcgccattt aaggcaggaa aaggctatta tgataccaat aaaagtctca atgcttcatt
      601 tattgacctt aacctatgtt ttgcagccgt gtcttccaac atggtacatt ggtggttgga
      661 acagaatagt tcctatgttg agcgatatct caaagaaaaa aagggtacag taaatgttgg
      721 ggaaaactat gcaataacgg acctacgtcg ctatattgat tcgttccagg atcagcaaaa
      781 tagtcgagtc tttgatatgt tcaaaactta ctacggttat cgtacaaatg gttttgtgtc
      841 agatgcccta gttgacttgt ttattaatgg atataaacct aaggtacagg gtggtgtcaa
      901 tctggaagat agccagttag taccagatag taggggtggc tttttctacg acgttttcaa
      961 agagaaaaaa ctgacaaatc gtatttttag tggtagctat gagcgttttg gtgaggatgt
     1021 tcgaactgtt ttggagagca aaggattact cggtctaact tatagaacat taggctatgc
     1081 aacgcatatt gtgacggtat ggggtgctga gtacgataat caaggtaaga ttagggctgt
     1141 ctatatcact gattccgatg atcaacaaga acaaattggt ttgaagcgta tgggaatcac
     1201 tcgtgatgct tctggaaatc cgcgtttgaa taatcatgtg aaaaataatt cagctggggc
     1261 gcttttggat tatgtccata caatccgtct tggtcaagac ttatgggaag aatatttcaa
     1321 tccgttcgca aaagccaaag aaatagctag tcagatacta gctgatagaa agaaggcgtt
     1381 ggttctgtct attcaaggac aatctgaatt gccagaatca atgcggctga tttatcttga
     1441 aaaactaaat aatctctata atcaagggat tctatctatt caaaagacag aaagttctga
     1501 gatgctaagt ggtgcattgg aaaatggttt aaatagttta aagagtttag attttcctat
     1561 ttcagaagtt ggaaatgctt tggcaccaga tttatcagta ggtgatcgct caacggtttc
     1621 agatgttgat tctctatcat ctcaagaaac aagttccaca aatttggaag cagacacaga
     1681 gaatgcaggt attattgcag atggtaccaa tcaattgcat tttccagtgg aggcccaaac
     1741 gacatcttca gtagaggctg agggagataa tgtttttgaa caagaggcag atacattacc
     1801 aataattatt gaaaacaagg atgaatttgg ttcagaacta tcaggaaaca tgcaaacgtc
     1861 agaaacggat tcgctagtag tagctgttga agaagatgtg aaaaatgatg aggtagacca
     1921 agttgaaaag cttcttgaat cagaaaaagt tgaaaatcag agttcggaac ttctgtcaga
     1981 caccctaatc gtagagggtg caaatgacaa agaagaagat agagtggagg cggttgtttc
     2041 tgaacaacca gactcaatac cacatcaaaa tgtagaaatc tctcctgtag aaccaatgaa
     2101 tgtcgaaact gaatctgtgg tcactcctat taatgatgca gctactcctc atggtttccc
     2161 gatgtatata gataattccg taactgaatc tgtagctact ccacttgaaa aagactccat
     2221 tcaagccgga gagacagaaa ttgcagaacc aacctcgagc gaatcaacta gtgttgaagc
     2281 tgaacttgtc gacaattctg aaatccattc agctacctct tcagttactc cccgtggttc
     2341 ctcggcatat gcagatagtt ccacaactga atctgtagct actctgcttg aaaaagactc
     2401 cattcaggct ggagagacag aaattgcaga accaacctcg agcaaatcaa ctaatgtcga
     2461 agctgcatct gtcgacaatt ctgaaattca tgcagatacc tctctaactg ctgtttcatc
     2521 agtcaatctg gataatccag tgattgaacc agtagctatc ccccttatcg gttctaagag
     2581 ggacacgaat gcagaagtgg aagtttcttc attatcgaaa agagaggtta gaaaaccaaa
     2641 tactgaaggg ctaatctctg ttcaatcaaa agttattaag aaagaattgc tagaatcaag
     2701 cttagtagaa gcagggtctc cattgctaga agccaccatt gctcagtctt caaactcaaa
     2761 tagtactgag ataggtatga gctatcagaa tactgtgtta ttagagtcta ataatacaga
     2821 gcgtcaggtg tctaaagcag aaattgttat agaacacaag gagacagagt tagttgaaac
     2881 ggtttcatct gcttctgagc ctgtagtgct cgtagaaaat atctcacaaa cctcaaataa
     2941 tactattgaa tctggtaaga atatgggagt tcaatctcaa gcaggtgcaa aacaaatttt
     3001 aggcatagaa caatcttcga aagtaagtac acctacttca agacagatta tgggagtcgg
     3061 tctattgact cttgttcttg gtagtgcttt aggtttgtta aagaaaagac gtaagtaaaa
     3121 gaagtatcgt catttagttt ttcttttatt acttcgttaa ctc
//
LOCUS       DASGCC010000156         3107 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.157, whole genome shotgun sequence.
ACCESSION   DASGCC010000156 DASGCC010000000
VERSION     DASGCC010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.157"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            30..1376
                     /gene="gdhA"
                     /locus_tag="U1404_001804"
     CDS             30..1376
                     /gene="gdhA"
                     /locus_tag="U1404_001804"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEM5348716.1"
                     /translation="MSNAKAYIQASFEAVKARNPHETEFLQAVEELFSTLEPVFEAHP
                     EYIEENILARIVEPERIISFRVPWTDKDGNVQVNRGYRVQFNSAVGPYKGGLRFHPTV
                     NQSILKFLGFEQIFKNVLTGLPIGGGKGGSDFDPKGKTDAEIMRFCQSFMTELQKHIG
                     PSLDVPAGDIGVGGREIGYMYGQYKRLRQFDAGVLTGKPLGFGGSLIRPEATGYGLVY
                     FTDNMLAANGKSFKDQTVLISGSGNVAQYAVQKATELGAKVISVSDSNGYIIDETGID
                     FDLLVDIKEKRRARLTEYAAEKATAKYFEGSVWNYDGKADIALPCATQNEINGEQAAA
                     LVKNGVYCVAEGANMPSDLDAIKVYKENGVLYGLAKAANAGGVAVSALEMSQNSLRLS
                     WTREEVDGRLKDIMANIFNTAKETAEKYDLGTDYLAGANIAAFEQIADSMIAQGLV"
     gene            complement(1611..2198)
                     /locus_tag="U1404_001805"
     CDS             complement(1611..2198)
                     /locus_tag="U1404_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HEM5348717.1"
                     /translation="MQTKDFVVENGQMYYKKKPLHKQPLFWTTIAGAILSFILGVTCF
                     IFMVGLSAANFDNWDTGSDGYIDETVEYTEYQVGDSVDFSDGLHVTVTSMGKDDSIEL
                     VDSYYSTAYVVEMEVENSTAKELYFDEYYFSLMDPVSQIPFTLDLRTYDVNLVEKLKP
                     GEKVQVKLIYGIDNETNFGFTYEDAMWTELVAEGI"
     gene            complement(2209..3057)
                     /locus_tag="U1404_001806"
     CDS             complement(2209..3057)
                     /locus_tag="U1404_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEM5348718.1"
                     /translation="MNDFITKYLSQFNIEAIVTAGLNKVLSLVLLFVAFYIIKKIAKA
                     SVKKVLVPSLKVSTQDIGRQKTISRLVESILNYLLYFILIYCILSILGLPVSSLLAGA
                     GIAGVAVGLGAQGFLSDLVNGFFILIERQFDVGDVVKLTNGPITISGTIVSMGIRTTQ
                     VRDADGTLHFIPNRNILVVSNQSRGDMRAQIDIPLKFNTDLEQVYRVIEEVNLREISN
                     FDQITGVTVLGPQNAISGQFVFRVNLFVANGQQNKIYHQFFGFYQDALRQAGIDLPSS
                     GPTVLK"
BASE COUNT          960 a          684 c          615 g          848 t
ORIGIN      
        1 aataaataaa aaagaaatca ggtgatccca tgtcaaatgc caaagcttac atccaagctt
       61 cttttgaagc agtcaaagcc cgcaacccac atgaaacaga attcctccaa gctgtagaag
      121 agctcttctc tacacttgag cctgtttttg aagcacaccc agaatacatc gaagaaaaca
      181 tcttggcccg tattgttgag cctgagcgta tcatcagctt ccgtgttcca tggacagata
      241 aagatggaaa tgtccaagtc aaccgtggct accgtgttca gttcaactca gctgtaggtc
      301 cttacaaagg cggtcttcgc ttccacccaa ctgtaaacca atccatcttg aagttcctcg
      361 gttttgagca aatcttcaaa aacgtcttga ctggtcttcc aatcggcggt ggtaaaggtg
      421 gttcagactt tgatccaaaa ggaaaaactg atgctgaaat catgcgcttc tgccaaagct
      481 tcatgactga attgcaaaaa cacatcggac cttcacttga cgtccctgct ggtgacatcg
      541 gtgtcggtgg tcgtgagatt ggttacatgt acggtcaata caaacgcctc cgccagtttg
      601 atgcaggtgt cttgactggt aaacctcttg gctttggtgg ttcattgatc cgcccagaag
      661 caactggtta cggtttggtt tacttcactg ataacatgtt ggcagcaaac ggtaaatcct
      721 tcaaagacca aactgtcctt atctctggtt ctggtaacgt tgcccaatat gctgttcaaa
      781 aagcgactga acttggtgca aaagtcatct ctgtttcaga ctcaaatggt tacatcattg
      841 acgaaactgg tatcgacttc gacctcttgg tggacatcaa agaaaaacgc cgcgctcgtt
      901 tgacagaata cgctgcagaa aaagcaactg ctaagtactt cgaaggttct gtatggaact
      961 acgacggcaa ggctgatatt gcccttccat gtgcgactca aaacgaaatc aacggtgagc
     1021 aagctgctgc ccttgtgaaa aatggcgttt actgtgtggc tgaaggtgcc aacatgccat
     1081 ctgacctgga tgctatcaaa gtttacaaag aaaatggcgt tctttacggt cttgcaaaag
     1141 ctgccaacgc tggtggtgta gccgtatctg cccttgaaat gagccaaaac agccttcgct
     1201 tgtcatggac tcgtgaagaa gtagacggcc gtcttaaaga catcatggca aatatcttca
     1261 acacagccaa agaaactgct gaaaaatacg accttggtac agactacctt gccggtgcta
     1321 acatcgcagc ctttgaacaa attgcggata gcatgattgc ccaaggtttg gtataagctt
     1381 acttttagtt tactaaacta taataaaaac gcccccaaaa ttgacgtgct aattttgggg
     1441 gtatttttca ttaaaagaag aggagaacag tggataaaca tgttctcctt tttaaaatgt
     1501 aaaaataaca gataagtcgg atatagtaca attaccaagc cgaacaatct gaaccaaggg
     1561 gcgtataaac ccgcaaaatt gtgcaatatt taaaactttt tctacagcaa ttagatacct
     1621 tctgcgacta attccgtcca catggcatct tcgtaggtaa aaccaaagtt tgtttcatta
     1681 tctataccgt agataagttt tacttgtact ttctctcctg gcttcagctt ttcaactaga
     1741 ttcacatcat aggtccgcaa atccagggta aagggaatct gactaacggg atccatgaga
     1801 ctgaaatagt attcatcaaa atagagctct tttgcggtcg aattttcaac ttccatttca
     1861 acaacataag ctgtgctgta gtagctatcc actagttcta tgctatcgtc tttgcccata
     1921 gatgttactg ttacatgaag accatcagaa aaatcaactg agtcaccaac ttgatactcc
     1981 gtgtattcca cagtctcatc aatgtatccg tcactacctg tatcccaatt atcaaaattt
     2041 gctgcactta gaccgaccat aaaaataaaa caggttactc ctaggatgaa ggagagaatg
     2101 gcaccagcaa tggttgtcca aaagagaggc tgtttgtgca agggtttctt cttataatac
     2161 atctgcccat tttcaacgac aaaatctttt gtttgcataa taaactcctt attttaaaac
     2221 agttggccca cttgaaggta aatctattcc tgcttgacgc agagcatctt gataaaaacc
     2281 aaagaattga tgatagatct tgttctgttg accgttggct acgaaaagat taacacgaaa
     2341 tacaaactgt cccgaaatag cgttttgggg acctaataca gtcacacctg taatctggtc
     2401 aaaattgctg atttctctca aattgacctc ttctattacg cgatagactt gctccaaatc
     2461 ggtattaaat ttgagcggaa tatcgatttg agcacgcatg tcccctcttg actggttgga
     2521 taccactaga atgttgcgat tgggaataaa atgcaatgtg ccatctgcat cacgtacttg
     2581 tgttgttcgg attcccatgc taacgatggt tcctgaaatg gtaatgggcc cgttggttaa
     2641 cttaaccaca tctccgacgt caaactgtcg ttcaattaag ataaagaatc cattgaccaa
     2701 gtctgagaga aaaccttgtg cgcccagccc aacagctacc ccagcaatcc cggctcctgc
     2761 aagaagactg gataccggta aaccgaggat actcaaaata cagtagataa ggataaagta
     2821 gagtaggtaa tttaagatgc tttccaccag acgactgatg gtcttctgac gaccaatgtc
     2881 ttgtgtagat acctttagag agggaaccaa aacctttttc acagaagctt tggctatctt
     2941 cttgataatg taaaatgcaa caaagagtaa aacaagcgat aaaaccttat ttagacccgc
     3001 tgtcacaatg gcctcaatat taaattgaga caaatacttg gtaataaaat cattcatgag
     3061 ataattatag cagaaaacat cctaaaaaaa caaaaagaca gccaagt
//
LOCUS       DASGCC010000157         2982 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.158, whole genome shotgun sequence.
ACCESSION   DASGCC010000157 DASGCC010000000
VERSION     DASGCC010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.158"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..430
                     /locus_tag="U1404_001807"
     CDS             <1..430
                     /locus_tag="U1404_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5348719.1"
                     /translation="RKLSLNRFFSRTFGQTVTPREVVQKTLNFSEELKFYYELYQILL
                     FHFQEMNSKYFFELLEDNLDLVNPAFKTVFKTFLKYKTYITNAMELPYSNAKLEATNK
                     LIKDIKRQAFGFRNFTNFKTKIYIALNIKNERTNFVLSRC"
     gene            complement(480..1022)
                     /gene="lepB"
                     /locus_tag="U1404_001808"
     CDS             complement(480..1022)
                     /gene="lepB"
                     /locus_tag="U1404_001808"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5348720.1"
                     /translation="MVKRDLIKQISLLVLLILGIIGLRFWLLEPVTITPEMANSYLKE
                     NDFIMTVRNVRPIHGDFILYNHEGKEYVSRVIALENETVTYMDDVLYRNDIIITENYL
                     KTPHSQESYTDDFTLETLTNGKYNVIPEGHYLVLNDVRTNQQDSRSFGLISSEAIVGR
                     LTFRISPLSEFGFIKTGLVQ"
     gene            complement(1065..1682)
                     /locus_tag="U1404_001809"
     CDS             complement(1065..1682)
                     /locus_tag="U1404_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HEM5348721.1"
                     /translation="MSDIMYPEVLTVGSGAVKVATVGDSLTYGYGLENREKDAYPCIL
                     AEKLGHHYQVSNYGLSGRSLQSTADFPYFKEKNAQLSLESEADIVIIMIGSNDSRGPY
                     WNRERFIREYREMAEQYMDLPSQPDVYLVIPPYVPTSRFGLNNQIIEDELQKIIPAIG
                     NELGLPVINLYTVTEGHLEYYSDGLHLTPLGNQVIAEEIYQHLRH"
     gene            1767..2876
                     /locus_tag="U1404_001810"
     CDS             1767..2876
                     /locus_tag="U1404_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEM5348722.1"
                     /translation="MKKQVIIIGGGIVGSTVAFYLSQEEQVNLTLIDSGIGTATRAAA
                     GIICPWMAQKKNKDWYKLTSDGAVFYRQLVADLEKSGATEIPFKQTGTIGLKSKPELL
                     DKIQKIAEERRVDTPTIGEITPLIGSEINQYLPLLKPDYFGIHLEGGGRIDGGRLIDI
                     LQEQFLKNGGTRIYGQAKLLDNHTVEVDNQVLTADHIILATGAWLPHILEPLGYQVDV
                     RPQKGQLFELDTEFDTDNWPVCMPYGEIDILPFENGKIIIGATHEDDMGYDLELDPEK
                     IQAMHDKIAEFMPDLANYPVARTRIGTRAYTSTYSPFYGNIEDMPNVWVASGLGSTGL
                     TNGPIIGWQIAKEILNQETNFDRTPYSPNRYILKK"
BASE COUNT          946 a          641 c          517 g          878 t
ORIGIN      
        1 tcgaaaactg tctctgaatc gcttcttttc tcgcactttt gggcaaacag taacaccgag
       61 agaggttgtc cagaagacat tgaatttctc tgaggaactg aaattctatt acgaactcta
      121 tcagatcctt ctcttccatt tccaagagat gaactcgaaa tatttcttcg agcttctaga
      181 agacaatctg gatcttgtca atcctgcctt taaaactgtt tttaaaactt ttctaaagta
      241 taaaacgtac atcacgaacg ccatggagct tccatattcc aacgctaagc tggaagcgac
      301 caataaactc atcaaagaca tcaagaggca agcgttcggc tttaggaact ttacgaactt
      361 taaaacaaag atatatattg ctttaaacat caaaaatgag agaacgaatt tcgtcctctc
      421 taggtgttag cttttcgtct acccactaca gttgacaaag agcctaaaaa aagctgattc
      481 tactgaacca gccctgtctt aataaaacca aattctgaaa gtggactaat ccgaaaagtc
      541 agtctaccaa caatagcctc actagaaatc aaaccaaaac tacgactatc ctgttgattc
      601 gttcgtacat cattcaacac caaatagtgc ccctctggaa tgacgttgta ctttccattt
      661 gtcaaggttt ccaatgtaaa gtcatctgta taactttctt gtgaatgagg cgtttttaaa
      721 tagttctctg taataataat atcattacga tagagaacat cgtccatata ggtaaccgtc
      781 tcgttttcca atgcaatcac acgactcaca tactcttttc cctcatggtt atacaaaata
      841 aaatctccat gaatcgggcg gacatttcgc actgtcatga taaagtcatt ttccttcaaa
      901 taactatttg ccatctcagg ggtaatcgtg actggctcaa gtaaccaaaa tcgtaggcca
      961 atgattccca aaatcaataa gaccaataaa ctgatttgtt ttattaaatc tctttttacc
     1021 ataatctctc catttcacta gtattatacc acaatttaga gccattagtg tctgagatgc
     1081 tggtaaatct cttcagcaat aacttgattt cctaacggtg tcaaatgaag accatcgcta
     1141 tagtattcaa gatgtccctc cgtcacagtg taaaggttaa taactggtaa accaagttcg
     1201 tttccgatag ctgggataat tttttgtaat tcatcttcaa taatttgatt attcaatcca
     1261 aaacgactgg ttggtacgta aggcgggatg actaaataaa catccggctg gcttggtaaa
     1321 tccatatact gctctgccat ttccctatac tctcgaataa acctctccct attccaatat
     1381 ggtcctcggc tatcgttact accaatcatg atgatgacaa tatctgcttc actctcaagt
     1441 gaaagttggg cattcttctc tttaaagtaa ggaaaatctg cagttgactg aagtgaacgc
     1501 ccactcaatc cataatttga aacttgatag tgatgcccaa gtttctcagc tagaatacaa
     1561 ggataggcat ctttttcccg attctccaag ccatatccat aagtcaaact atctccgact
     1621 gttgcaactt ttacggcccc acttccaaca gttaggacct caggatacat tatatctgac
     1681 acacgaactc ctcaattttt cttattttct attgtatcat gttgaaaaaa ataaataaac
     1741 ttccgaattt gtgatataat taacttatga aaaaacaagt tattattata ggcggaggaa
     1801 ttgttggctc tactgtagcc ttttatctct cccaagaaga acaagtcaat cttactctca
     1861 ttgattcagg tattggaaca gccacacgag ctgccgcagg tatcatctgc ccatggatgg
     1921 ctcagaaaaa aaataaagac tggtataagc tgacttccga tggtgctgtt ttctaccgtc
     1981 aattggtagc cgatttggaa aaatcgggtg ctactgaaat tccattcaaa cagactggaa
     2041 ccatcggcct aaaaagtaag cctgaactac ttgataaaat acaaaaaatt gccgaggaac
     2101 gtcgcgtaga tactccgact attggcgaaa ttactccgct tataggctcg gaaattaacc
     2161 agtacctgcc actacttaag ccagactatt ttggtatcca tttagaaggt ggcggtcgta
     2221 ttgatggtgg gcgtttgatt gatattcttc aggaacaatt tttgaaaaat ggtggtacac
     2281 gtatctacgg acaagcaaaa ctgctcgaca accatactgt cgaagtagat aatcaagtgc
     2341 ttactgctga ccatattatc ttagccacag gggcctggtt gccacatatt cttgaacctc
     2401 ttggttatca agtggatgtt cgaccacaaa aaggacaatt gttcgaatta gatacagaat
     2461 tcgataccga caattggcca gtttgtatgc cttacggaga gattgacatc ctaccatttg
     2521 aaaatgggaa aatcattatt ggtgcaactc atgaagatga catgggctac gatttagaac
     2581 tagaccctga aaaaatccaa gccatgcatg ataaaatagc tgaattcatg cctgatttgg
     2641 caaactatcc tgtagccaga actcgcattg gaacgcgcgc ctatacttca acttattcac
     2701 cattctacgg aaatattgag gatatgccta atgtctgggt agctagtggt ctgggctcca
     2761 ccggtctgac aaacggtcca attatcggtt ggcaaattgc taaagaaatt ctcaatcaag
     2821 aaacaaactt tgaccgtaca ccatattctc caaatagata tattctcaaa aaataagata
     2881 cgatacgttt agattctact aactctttaa atgtagatac taagactagt tgttatctaa
     2941 gcaataaatc atgaccaccc gtcaaacggg tggtttgaac aa
//
LOCUS       DASGCC010000158         2942 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.159, whole genome shotgun sequence.
ACCESSION   DASGCC010000158 DASGCC010000000
VERSION     DASGCC010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.159"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(20..1831)
                     /gene="glmS"
                     /locus_tag="U1404_001811"
     CDS             complement(20..1831)
                     /gene="glmS"
                     /locus_tag="U1404_001811"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEM5348723.1"
                     /translation="MCGIVGVVGNTNATDILIQGLEKLEYRGYDSAGIFVTGGEQAHL
                     VKAVGRIAELSAKVGDKTEGTTGIGHTRWATHGKPTENNAHPHTSQTAGHILVHNGVI
                     ENYAEIKEEYLAGHDLKGQTDTEIAVHLIGQFAEEGLSTLEAFKKALKIIQGSYAFAL
                     IDATDADTIYVAKNKSPLLIGLGDGYNMVCSDAMAMIRETSEYMEIHDKELVIVKKDS
                     VEVMDYDGNEIERGSYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLISAYTNEAGQ
                     VTVDADIIKAVQEADRIYILAAGTSYHAGFASKDFLEKLTDTPVELGISSEWGYNMPL
                     LSKKPLFVMISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREATYTMLLHAGP
                     EIAVASTKAYTAQIATLAILAKAVGDANGNAYAKEFDLVHELSIVAQSIEASLSEKDV
                     IAEKVEKLLSTTRNAFYIGRGSDYYVSMEASLKLKEISYIQCEGFAAGELKHGTISLI
                     EDGVPVLALISNHPHLASHTRGNIQEVVARGANVLTIVDEAVAKEEDDITVTTVHPFL
                     SAIAMVVPTQLIAYYATLQRGLDVDKPRNLAKSVTVE"
     gene            2138..>2942
                     /locus_tag="U1404_001812"
     CDS             2138..>2942
                     /locus_tag="U1404_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5348724.1"
                     /translation="MEQLYHTTELIGIKDKNIKILFILKHQTHLEIRAKLDYDSPGCP
                     HCQGKCIKYDFQKSSKIPILDCQGFPTLLLLKKRRFQCKSCQKVTVAETALVKKNCQI
                     SLPIWEKVTQLHTENMTNIAIARRLHISVSVVQRKLAQFQFEHDFTKLPKVLSWDEFS
                     RNKGKLAFIAQNFETRSIVTILDNNRQTTIKNYFYKYPRAVRETVEVVTVDMSGSYIP
                     ITKKLFPRAKIVLDRFHIIQHLSRAMMTTRIDIMKTFDTRSLPYRSMKNH"
BASE COUNT          885 a          672 c          533 g          852 t
ORIGIN      
        1 atccacgcct tccttcttct tattcaacag taacagactt agccaagtta cgtggtttat
       61 caacatccaa accgcgttgc aatgtcgcat agtaagcgat caactgtgtc ggaaccacca
      121 tagcaatcgc tgacaagaac ggatgaacag ttgtaacagt gatgtcatcc tcttccttag
      181 ctactgcttc atctacaatt gtcaagacat tggcaccacg cgccactact tcctgaatat
      241 tgcctcgagt atggcttgca aggtgcggat gatttgaaat caaggccaag acaggaacac
      301 cgtcttcaat caatgaaatg gtaccgtgtt tcaattcacc tgccgcaaag ccttcacatt
      361 ggatgtatga aatttctttc aatttcaagc tggcttccat agaaacgtag tagtcactac
      421 cacgaccgat atagaatgcg ttgcgagtgg ttgataagag tttttcaact ttttcagcaa
      481 tcacatcttt ttctgacaag ctggcctcga tagattgagc tacgatggac aattcatgca
      541 ccaagtcaaa ttctttcgcg taggcattgc cattggcatc accgacagcc ttagccaaga
      601 ttgccaaagt cgcaatctgt gcagtgtagg cttttgtaga agctaccgca atttctggtc
      661 ctgcatggag caacatggtg taagttgcct cacgagatag ggtagaacca ggaacgttgg
      721 ttacagtcaa acttggaatg cccatttcat tagctttaac caatacctga cggctatcag
      781 cagtttcacc tgactggcta atcatgacaa agagtggctt tttgctcaaa agcggcatat
      841 tgtagcccca ctcagatgaa attcccaact ctactggtgt atctgtcaat ttttccaaga
      901 agtcttttga ggcaaatcct gcgtgatagg aagttccagc agccaagata tagatgcggt
      961 cagcttcttg tactgcctta ataatatccg cgtcaactgt tacctgacca gcttcatttg
     1021 tataggcgct aatcaattta cgcataacag ttggttgctc atcaatttcc ttgagcatgt
     1081 agtatggata agttccctta ccaatatctg acagatcaag ctcagctgta tagctaccac
     1141 gttcaatctc atttccatca tagtccatga cttcaacact atcttttttc acgataacca
     1201 attccttatc gtgaatttcc atgtattcac ttgtctcacg aatcatagcc atagcatctg
     1261 agcagaccat gttatagcca tcaccaagac caatcaaaag tggagattta tttttggcaa
     1321 cgtagattgt atctgcatcc gtagcatcaa tcaaagcaaa ggcatatgaa ccttgaataa
     1381 tcttcaatgc ttttttaaag gcttctagag ttgacaaacc ttcttctgca aattgaccaa
     1441 tcaagtgtac agcaatttct gtatctgtct gccctttcaa gtcatgacct gcaagatact
     1501 cttccttgat ttctgcgtag ttttcaatca caccgttgtg aacaaggata tgtccagcag
     1561 tttgagaagt gtgagggtga gcattgttct cagttggctt accatgagtc gcccaacgag
     1621 tatgaccgat ccctgttgtc ccttcagtct tatcgccaac ttttgcagac aattctgcaa
     1681 tgcgaccaac agctttcaca agatgagctt gctcaccacc cgtcacaaaa atacctgctg
     1741 aatcataacc acggtattct aatttttcaa gtccttgaat caaaatatca gttgcgtttg
     1801 tatttcctac aacaccaacg attccacaca tacatatcac ctacgatgtt tgtcaacatc
     1861 ggctttcatt tctttaaaaa ttggtctagt ctaatttgta tctaaaaaga ccagtgaaat
     1921 cagtatataa caagttttta tccttgtcaa cattttaatt ggtctagtct aatttcaaaa
     1981 tacagttcca gtcatctcaa cacaattaaa aaaaggctct ataatttctg tagtgggtaa
     2041 atccactgta gagattatgg aggctttttg agtatataca aaaagtccca tatgacctat
     2101 aatgaaaagc aaccacactc acattagaaa gactcatatg gaacaacttt atcataccac
     2161 agaactaatt ggaatcaaag acaaaaacat caaaattctc ttcattttga aacatcagac
     2221 ccatctagaa atcagggcaa agctagatta cgacagccct ggttgtcctc attgccaagg
     2281 aaagtgtatc aagtacgact ttcaaaagtc gtcaaagatt ccgattttgg attgccaggg
     2341 ctttccaacc ctccttttgc ttaagaaacg gcggtttcaa tgcaaatctt gccaaaaagt
     2401 gactgtagct gagacagctc tagtcaagaa aaactgtcag atttccctac ctatttggga
     2461 gaaagtgaca caactccata cagaaaacat gactaatata gccatcgcta ggagattaca
     2521 tatctccgta tcggtcgtcc agaggaaact ggctcagttt caatttgagc atgattttac
     2581 gaaattacca aaagtcttga gttgggatga atttagtcgg aacaagggaa aactcgcctt
     2641 tattgctcag aattttgaga cgagatcgat tgtgaccatt cttgacaaca accgccaaac
     2701 caccatcaag aactatttct acaagtatcc tagggcggtc agagaaactg tcgaggtcgt
     2761 aacagtggac atgtcgggta gctatattcc catcaccaaa aaactatttc caagagctaa
     2821 aattgtcctt gatagatttc acattatcca acacctgagc cgtgctatga tgacgactag
     2881 aattgatatt atgaagactt tcgatacgcg ttccctacct tatcgatcca tgaaaaatca
     2941 ct
//
LOCUS       DASGCC010000159         2725 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.160, whole genome shotgun sequence.
ACCESSION   DASGCC010000159 DASGCC010000000
VERSION     DASGCC010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.160"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            38..589
                     /locus_tag="U1404_001813"
     CDS             38..589
                     /locus_tag="U1404_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5348725.1"
                     /translation="MTAILQEEIATSNIFIDKASGKDFDRRNYKRLLRKLRTGDELDI
                     KSIDRLGRNYDEIIEQWRLWVKKKQVDISVLDFPLLNTRNGIENVTGKLISDLVLQIL
                     SYVSQIEREQIQQRQKEGIAEAMKKGVRFGRPKLEKPFLFDDIAQAYQNGEISVQEGA
                     KVLNVPKSTFHNWLKDENYCPKE"
     gene            774..1502
                     /locus_tag="U1404_001814"
     CDS             774..1502
                     /locus_tag="U1404_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5348726.1"
                     /translation="MTKNFTTKAAKVLTIATLSAGTLIGAVALDTTTVSASSVSQISG
                     DELKGKIQAVTNSFPTFESAQAFVTGQMSQMLFGESYRAVVIPENSLYIVEVTIDYDA
                     LTSKDQAIALANQVVAAADSAIGGAAPATPAEPETPVTSEEPTTPVEPETPVTPVEPT
                     TPTEPETPVTSVEPTTPIEVSKNQKSSTTKEEIKKVIPDNSTEAIKKDVKTLPNTGDA
                     GSVLSIIGSGLLSLGGYVALKRKN"
     gene            1750..2478
                     /locus_tag="U1404_001815"
                     /pseudo
     CDS             1750..2478
                     /locus_tag="U1404_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002406008.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
BASE COUNT          966 a          517 c          490 g          752 t
ORIGIN      
        1 cagagtctcc acaaaggagc aacacattga cagacaaatg acagcaattt tgcaagaaga
       61 gattgccaca agcaatattt ttattgataa agcttctggc aaagatttcg atagaaggaa
      121 ttataaacga ttgttaagaa aacttcgaac tggtgatgaa cttgacataa aatccattga
      181 cagactagga agaaattacg atgaaatcat agaacaatgg agattatggg tcaaaaagaa
      241 acaagtcgat atctctgtgc tagattttcc actcctaaat actcgaaacg gaatagaaaa
      301 cgtcacagga aaactaatct cagaccttgt tctccaaatt ctttcctatg tgtcacagat
      361 tgaacgggag caaattcaac aaagacaaaa agaaggaatc gcggaggcta tgaaaaaagg
      421 ggtgaggttt ggaagaccga aattagagaa accttttctg tttgacgaca tcgctcaagc
      481 ctatcaaaat ggagaaataa gtgttcaaga gggagcaaaa gtattaaatg ttccgaagag
      541 cacctttcat aattggctaa aagatgaaaa ttattgtcca aaagagtagg agtttttaga
      601 catcagctgt atctgttatt tctaactcag atgacttcaa gaaaaatcta aaaaacatta
      661 taagagtaag cttttctgtc aacaagtata ttttaacaaa accgtcccaa atagtctgct
      721 ttttgggaca agttaagtct atttctgttt aaattatcta ggagggtcat gatatgacta
      781 agaatttcac aaccaaggcc gcaaaggtct taacaattgc cactctttct gcgggaacac
      841 tcattggagc agtcgcatta gatactacta ccgtttcagc ttcatctgtc tcacaaatct
      901 ctggagatga attgaaaggt aaaattcaag ctgtcactaa ctcatttccg acattcgagt
      961 ctgctcaagc attcgtaacc ggtcaaatgt ctcagatgtt atttggggag tcatatcgtg
     1021 cagtcgtgat tccagaaaat tctctctata tcgtagaagt aacgattgat tacgatgctt
     1081 tgacttctaa agaccaagca atcgcattgg ctaatcaagt tgttgcagct gcagattctg
     1141 caatcggcgg agctgcacct gcgactcctg ctgagccgga aacacctgtg acttcagaag
     1201 agccgactac tccagttgag ccagaaacac ctgtaactcc ggttgaacct actaccccta
     1261 ctgagccaga aacacctgta acttcggttg aacctactac ccctattgaa gtttcgaaaa
     1321 accaaaaatc ttctacaaca aaagaagaaa tcaaaaaagt tatccctgat aattcaacag
     1381 aagcaatcaa gaaagatgtt aaaacattgc caaatacagg cgatgcaggt agcgtactga
     1441 gtattattgg tagcggtttg ctttcactgg gtggatatgt agccctaaaa cgaaaaaatt
     1501 aacgactttg ccttctctgc cttagataga gagggctttt actaaattag aaggaaaata
     1561 aatgagcata cgacgctttt tatacgaaaa cattagcaga cggctaaagc atcaaatcaa
     1621 tagtaagcat aatgggaaga acaaggaact aattgcctat ttagaaaaat gctacctcgt
     1681 ctagatgaag aagatgataa ggtatggacc gaatgtactc tatctaaaat attaaacgga
     1741 aaatcttcgc ttagtcttac tgatttagat atattagcat cgacaagtat gcagaaatcc
     1801 attcaaagaa aacaactcat gaaataaaaa cttcattacg tgatgcttat gctcgtggct
     1861 atatctcaac agattttctt tacttagtta aggcaagggg catattccca taaaacgaaa
     1921 taagtcttta tctgtcacca attttcaaaa actacgtact tatcttttta acaatccaaa
     1981 agatgagttc catattctcg tacttttagc acttgaaata ggtatgcgtt gaggagaatt
     2041 attggcattc gacctgaata tctgtttgat tacggaatca aagtcagaga atctattagt
     2101 ccaacctcta gtgatacttc gctaaaaact gaaaattcaa gacgagaggt cacaatcaat
     2161 aaagaagtct atgacttact cctatcagtt tcagtaaaag aaaatggata tttcttcgat
     2221 cctgatggat ttcatcaatc tcgaaagtta gctaagttac tggaagaact aggaatctca
     2281 aaaatcacat ttcacggtct tcgagatact catgcttcat ctttattctc aaaggatgtt
     2341 gacatcatct atgtttcaaa aagacttggt catgtcaatg ttcaaactac acagaactat
     2401 tatctggagt taatgcctga aaaaagacac cagcaagatg ccgatgcctt aaatttattg
     2461 aattcattaa gcgagtaaac atttgaacca atttgaacca aaaagtcggc acaaatgttg
     2521 tccccataac gtttggatta acgtttagag aatttcgcta ttgaaaacga agacttctca
     2581 ccccttacaa atcccgttct atcaacattt acgaaaatga aacttccatg aaaatggact
     2641 aaaatcctct gatttggata aaattgacac caattaacac cataaaatag actagtcatc
     2701 agtaggtcaa actaatttga cctac
//
LOCUS       DASGCC010000160         2656 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.161, whole genome shotgun sequence.
ACCESSION   DASGCC010000160 DASGCC010000000
VERSION     DASGCC010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.161"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..1123
                     /locus_tag="U1404_001816"
     CDS             <1..1123
                     /locus_tag="U1404_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348727.1"
                     /translation="NGAKIGSIIGLNMMLGFHLKDIQFNAIAKAPQGHGHAAEYANNV
                     IDKIKYPFQKVEQVGRDNVKNGADRIVGNQKIQTKYYAKASGTINAAFDKANGGEYRY
                     KGMQLEVPKDQYNESIQLMKKKIKAGKVPGHSEPDDAYLIIRKGNVTYNEAKLVAKGG
                     NIVSFSQQIGKILTKKIADQTVKNVAANTVARQAAGVISFGITVGPDVFDLLQGRISS
                     QQLLKNSLVAGTGLLGGVAGGAVAGAFLGPVGSFVGAVAGGTLAAVGSKVVLDNYIED
                     DRIEMFAILKEEFIDIVMAMALSEEEFKEIQNNIFDKKLGERLKDMFQKKQSVKNRMF
                     TRESIIEREVERVISKRTVLAEEDILEAVQIAEKEFAVI"
     gene            1167..2255
                     /locus_tag="U1404_001817"
     CDS             1167..2255
                     /locus_tag="U1404_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEM5348728.1"
                     /translation="MISGIIAEYNPFHTGHKYLLEQAEGLKIVVMSGNFMQRGEPAIV
                     DKWTRAQMALEHGADLVVEMPFLVSVQSADHFAKGAISILHKLGVEKLVFGTEEMLDY
                     QKIADIYVDKSEEMENFVKNLPDNFSYPQKTQAMWQEFAGLTFTGDTPNHILALAYAK
                     AVAGTGIQLSPVQRQGAGFHSEEVETSYASATAIRKGADQLDLVRGFLPSVSLFEEAT
                     KVSWRNYFPLLRYQIATHPDLSQVFQVNEELASRIRSAIGSVATVEELVDAVATKRYT
                     KARVRRVLTYILINAVETPLPEAVHVLGFSTRGQAYLKQVKERVDLVTRIGKEPWDSL
                     TQQADAVYQLGADAMAEQTYGRVPVRVE"
     gene            2257..2637
                     /locus_tag="U1404_001818"
     CDS             2257..2637
                     /locus_tag="U1404_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TipAS antibiotic-recognition domain-containing
                     protein"
                     /protein_id="HEM5348729.1"
                     /translation="MKKEMSQLEAYKAEAKERWGQTATYAEFEVRYDASKDHLFAQEM
                     QAIFEAFGKMQSLGAVHPDVQAQVANLQAYITENFYTCTKEILQNIGLMYVEDERFSA
                     NIDRAGGLGTAAFVSQAIAIYCQE"
BASE COUNT          812 a          481 c          704 g          659 t
ORIGIN      
        1 aaatggagct aaaataggat caattatagg tttaaatatg atgctaggtt ttcatttgaa
       61 agatattcaa tttaatgcta ttgcaaaagc tcctcaagga catgggcatg cagctgaata
      121 tgctaataat gtaatagaca agataaagta tcctttccaa aaagtagagc aagtagggag
      181 agataatgtt aaaaatgggg cagatagaat tgttggaaat caaaaaattc aaacaaaata
      241 ctatgcaaaa gctagtggaa cgataaatgc agcatttgat aaggctaatg gaggagaata
      301 ccgttataag gggatgcagt tagaagttcc taaagaccag tataatgaat caattcaact
      361 catgaagaaa aaaataaaag ctggaaaagt tccgggtcat agtgagcctg atgatgccta
      421 tctgattatt agaaaaggga atgttactta taatgaggca aaactggttg ccaagggcgg
      481 aaatattgtt tcattttctc aacaaattgg aaaaattctt actaaaaaaa tcgctgatca
      541 aacagttaag aatgtcgcag ccaatactgt tgctagacaa gcagcaggag ttatttcatt
      601 cggaattact gtaggtccgg acgtatttga tctactgcaa ggtagaatat ctagccaaca
      661 attattaaaa aatagcctag tagcaggaac aggcttacta ggtggagttg caggtggtgc
      721 ggttgctgga gcatttttag gtccagttgg atcatttgta ggtgcagtag ctggtggaac
      781 attggctgct gttggttcta aggttgtttt agacaactat atagaagatg acagaattga
      841 gatgtttgca attctaaaag aagaatttat tgatattgtt atggctatgg cgctttcaga
      901 agaagagttt aaagaaattc aaaataatat cttcgataag aaattaggag aacgacttaa
      961 agacatgttc cagaaaaagc aatctgttaa aaataggatg tttactagag agtcaataat
     1021 tgaacgagag gttgaaagag ttatctcaaa acgcacggtt ttagcagaag aggatatact
     1081 tgaagcagta cagattgcag aaaaagagtt tgctgtaatt taggtattag gttgtagatg
     1141 gttgaataaa atctaggagg tagggcatga tttcagggat aatagcagaa tacaatccct
     1201 ttcacacggg gcataaatac ctgctggaac aggccgaggg gttgaaaatt gtggttatgt
     1261 caggcaactt catgcaacgg ggtgagccag ccattgtgga taagtggaca cgggctcaga
     1321 tggctttgga acacggggca gatcttgttg tcgagatgcc ctttttggtg tcggtccagt
     1381 cggctgacca ttttgccaaa ggagcaatca gcattttaca caagctaggt gtggaaaaac
     1441 tggttttcgg tacggaagaa atgctggatt accagaaaat tgcggatatc tatgtggata
     1501 agtcggaaga gatggaaaat tttgtgaaaa acttgccaga taatttctct tatccacaga
     1561 agacccaggc tatgtggcag gagtttgctg ggctgacttt cacaggtgac acgcccaacc
     1621 atattctggc tctagcttac gctaaggcag tggctggaac aggcattcag ctcagccctg
     1681 ttcaacggca gggagctggt tttcattcgg aagaggtgga aacgtcctac gcctcggcga
     1741 cagctatccg caagggtgct gaccagctgg acttggttcg cggcttttta ccgtctgtca
     1801 gtcttttcga agaggcgacc aaggtaagct ggagaaacta ttttccgctg ctccgctacc
     1861 agattgcgac ccacccagat ctcagtcagg tctttcaggt caacgaagaa ctagccagtc
     1921 gtatccgctc tgccattggg agcgtagcga ccgtggagga gttagtggat gccgttgcga
     1981 ccaagcgcta caccaaggcg cgggtgcggc gggtgctgac ctacatcctg atcaatgcgg
     2041 tggaaactcc cttgccagaa gcggtccatg tcctaggctt ttcaactcga ggccaggcct
     2101 atctcaagca ggtcaaggag cgggtggacc tggtgacgcg gatcggcaaa gagccctggg
     2161 acagcctgac ccagcaggcg gatgcggtct atcaactggg cgctgacgca atggcagagc
     2221 agacctatgg gcgcgtgccg gtgagggtgg agtgagatga agaaagagat gagtcaacta
     2281 gaagcctaca aggcggaagc aaaggaacgc tggggacaga ccgcgaccta tgccgagttt
     2341 gaagtacgct atgatgctag caaggaccac ttgtttgccc aagagatgca ggctattttt
     2401 gaagcttttg gaaaaatgca gagcttggga gccgttcatc cagatgtgca ggctcaggta
     2461 gcgaacttgc aggcctatat cacggaaaat ttctacacct gcacaaagga aatcttgcaa
     2521 aatataggtc ttatgtatgt tgaggacgag cgattttcag ccaacattga ccgagcaggt
     2581 ggactaggaa cagcagcctt tgtcagtcaa gctattgcga tttattgcca agaataaacg
     2641 aaagaagtct ggtgag
//
LOCUS       DASGCC010000161         2636 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.162, whole genome shotgun sequence.
ACCESSION   DASGCC010000161 DASGCC010000000
VERSION     DASGCC010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.162"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            89..676
                     /locus_tag="U1404_001819"
     CDS             89..676
                     /locus_tag="U1404_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003107040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEM5348730.1"
                     /translation="MDKLLALILLLLLSPVIIILAIWIKLDSKGPIFYRQERVTRYGR
                     IFRIFKFRTMISDADKVGSLVTVGQDNRITKVGHIIRKYRLDEVPQLFNVLMGDMSFV
                     GVRPEVQKYVNQYTDEMFATLLLPAGITSPASIAYKDEDIVLEEYCSQGYSPDEAYVQ
                     KVLPEKMKYNLEYIRNFGIISDFKVMIDTVIKVIK"
     gene            686..1900
                     /locus_tag="U1404_001820"
     CDS             686..1900
                     /locus_tag="U1404_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006152719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEM5348731.1"
                     /translation="MTKRQNIPFSPPDITQAEIDEVIDTLKSGWITTGPKTKELERRL
                     SVFTGTNKTVCLNSATAGLELVLRILGVGPGDEVIVPAMTYTASCSVITHVGATPVMV
                     DIQKNSFEMEYDALEKAITPKTKVIIPVDLAGIPCDYDKIYTIVENKRSLYVASDNKW
                     QKLFGRVIILSDSAHSLGASYKGKPAGSLADFTSFSFHAVKNFTTAEGGSVTWRSHPD
                     LDDEEMYKEFQIYSLHGQTKDALAKTQLGSWEYDIVIPGYKCNMTDIMAGIGLVQLER
                     YPSLLNRRREIIEKYNAGFEGTSIKPLVHLTEDKQSSMHLYITHLQGYTLEQRNEVIQ
                     KMAEAGIACNVHYKPLPLLTAYKNLGFEMKDFPNAYQYFENEVTLPLHTNLSDEDVEY
                     VIEMFLKIVSRD"
     gene            1918..>2636
                     /locus_tag="U1404_001821"
     CDS             1918..>2636
                     /locus_tag="U1404_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5348732.1"
                     /translation="MVERDMVERDTLVSIIMPSWNTAKYISESIQSVLDQTHQNWELI
                     IVDDCSNDETEKVVSHFKDSRIKFFKNSNNLGAALTRNKALRKARGRWIAFLDSDDLW
                     HPSKLEKQLEFMKNNGYSFTYHNFEKIDESSQSLRVLVSGPAIVTRKMMYNYGYPGCL
                     TFMYDADKMGLIQIKDIKKNNDYAILLQLCKKYDCYLLNESLASYRIRKKSISHDKIS
                     KKLRSHYDLFHICDEQPPLKS"
BASE COUNT          903 a          388 c          526 g          819 t
ORIGIN      
        1 tagagaattt tttaagaaga atgaagcaac cagtaaatat tttcagaaga tagaatcaag
       61 aagaggtgaa ttatttatta aattctttat ggataagtta cttgcgctta tcctattatt
      121 gctattatcc ccagtaatca ttatattagc tatttggata aaattagata gtaaggggcc
      181 aattttttat cgccaagaac gtgttacgag atatggtcga atttttagaa tatttaagtt
      241 tagaacaatg atttctgatg cggataaagt cggaagtctt gtcacagtcg gtcaagataa
      301 tcgtattacg aaagtcggtc acattatcag aaaatatcgg ctggacgaag tgccccaact
      361 ttttaatgtt ttaatggggg atatgagctt tgtaggtgta agaccagaag tacaaaaata
      421 tgtaaatcag tatactgatg aaatgtttgc gacgttactt ttacctgcag gaattacttc
      481 accagcgagt attgcatata aggatgaaga tattgtttta gaagaatatt gttctcaagg
      541 ctatagtcct gatgaagcat atgttcaaaa agtattacca gaaaaaatga agtacaattt
      601 ggaatatatc agaaactttg gaattatttc tgattttaaa gtaatgattg atacagtaat
      661 taaagtaata aaataggaga ttaaaatgac aaaaagacaa aatattccat tttcaccacc
      721 agatattacc caagctgaaa ttgatgaagt tattgacaca ctaaaatctg gttggattac
      781 aacaggacca aagacaaaag agctagaacg tcggctatca gtatttacag gaaccaataa
      841 aactgtgtgt ttaaattctg ctactgcagg attggaacta gtcttacgaa ttcttggtgt
      901 tggacccgga gatgaagtta ttgttcctgc tatgacctat actgcctcat gtagtgtcat
      961 tactcatgta ggagcaactc ctgtgatggt tgatattcaa aaaaacagct ttgagatgga
     1021 atatgatgct ttggaaaaag cgattactcc gaaaacaaaa gttatcattc ctgttgatct
     1081 agctggtatt ccttgtgatt atgataagat ttataccatc gtagaaaaca aacgctcttt
     1141 gtatgttgct tctgataata aatggcagaa actttttggg cgagttatta tcctatctga
     1201 tagtgcacac tcactaggtg ctagttataa gggaaaacca gcgggttccc tagcagattt
     1261 tacctcattt tctttccatg cagttaagaa ttttacaact gctgaaggag gtagtgtgac
     1321 atggagatca catcctgatt tggatgacga agagatgtat aaagagtttc agatttactc
     1381 tcttcatggt cagacaaagg atgcattagc taagacacaa ttagggtcat gggaatatga
     1441 cattgttatt cctggttaca agtgtaatat gacagatatt atggcaggta tcggtcttgt
     1501 gcaattagaa cgttacccat ctttgttgaa tcgtcgcaga gaaatcattg agaaatacaa
     1561 tgctggcttt gaggggactt cgattaagcc gttggtacac ctgacggaag ataaacaatc
     1621 gtctatgcac ttgtatatca cgcatctaca aggctatact ttagaacaac gaaatgaagt
     1681 cattcaaaaa atggctgaag caggtattgc gtgcaatgtt cactacaaac cattacctct
     1741 tctcacagcc tacaagaatc ttggttttga aatgaaagat tttccgaatg cctatcagta
     1801 ttttgaaaat gaagttacac tgcctcttca taccaacttg agtgatgaag atgtggagta
     1861 tgtgatagaa atgtttttaa aaattgttag tagagattag ttattttgga aggagatatg
     1921 gtggaaagag atatggtgga aagagacacg ttggtatcta taataatgcc ctcgtggaat
     1981 acagctaagt atatatctga atcaatccag tcagtgttgg accaaacaca ccaaaattgg
     2041 gaacttataa tcgttgatga ttgttctaat gacgaaactg aaaaagttgt ttcgcatttc
     2101 aaagattcaa gaataaagtt ttttaaaaat tcgaataatt taggggcagc tctaacacga
     2161 aataaggcac taagaaaagc tagaggtagg tggattgcgt tcttggattc agatgattta
     2221 tggcacccga gtaagctaga aaaacagctt gaatttatga aaaataatgg atattcattt
     2281 acttatcaca attttgaaaa gattgatgaa tctagtcagt ctttacgtgt cctggtgtca
     2341 ggaccagcaa ttgtgactag aaaaatgatg tacaattacg gctatccagg gtgtttgact
     2401 ttcatgtatg atgcagacaa aatgggttta attcagataa aagatataaa gaaaaataac
     2461 gattatgcga tattacttca attgtgtaag aagtatgact gttatctttt aaatgaaagt
     2521 ttagcttcgt atcgaattag aaaaaaatcg atttcacacg ataaaatatc aaaaaaacta
     2581 cgtagtcact atgatttatt tcatatttgt gatgaacagc ctcctttaaa atcctt
//
LOCUS       DASGCC010000162         2598 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.163, whole genome shotgun sequence.
ACCESSION   DASGCC010000162 DASGCC010000000
VERSION     DASGCC010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.163"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..1279
                     /locus_tag="U1404_001822"
     CDS             <1..1279
                     /locus_tag="U1404_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5348733.1"
                     /translation="NYYGRLFTKYQLTAKEREIAEKVPSITKKNNCFRCGTTFKEENK
                     LPNDAYYCRACLLLGRVRSDEKLYHFPQKDFPITKCLKWKGQLTDWQQRISDGLVANV
                     ENNRATLVHAVTGAGKTEMIYHTVASVIDKGGAVCLASPRIDVCIELYKRLQNDFSVP
                     ISLLHGESEPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPMLYQAADNAV
                     KEAGVQVFLTATSTDELDKKVRTGKLSRLSLPRRFHGNPLVVPQKVWFSKFDDTLKKN
                     RLVPKLKKAIEEQRKSGFPLLIFVPEISKGQEFTKIMKKTFPEETIGFVSSQTENRLE
                     IVEGFRKREITVLISTTILERGVTFPCVDVFVVQANHYLYTASSLVQIAGRVGRSIER
                     PTGLLQFYHEGSTGAIEKAIAEIKQMNKEAGYV"
     gene            1272..1937
                     /locus_tag="U1404_001823"
     CDS             1272..1937
                     /locus_tag="U1404_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEM5348734.1"
                     /translation="MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQ
                     HCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYNQAMAHYFSRYKFQGDYVLRNIF
                     AKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
                     SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFS
                     LTR"
     gene            2014..2556
                     /gene="raiA"
                     /locus_tag="U1404_001824"
     CDS             2014..2556
                     /gene="raiA"
                     /locus_tag="U1404_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEM5348735.1"
                     /translation="MIKFSIRGENLEVTEALRTYVEEKVAKIEKYFNEEQELNAKVNL
                     KVYRDKRAKVEVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKHRQ
                     KVATGQVFTDELVEQTGEEVKVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDANDG
                     TTNVLYRREDGDLGLLEVRQ"
BASE COUNT          920 a          452 c          529 g          697 t
ORIGIN      
        1 aaattattat ggaagattat ttaccaaata ccaattgaca gcaaaagaaa gagaaatagc
       61 agaaaaagtg ccaagtatta caaaaaagaa taactgcttt cgctgtggaa caacttttaa
      121 agaagaaaac aaattgccaa acgatgctta ttactgtcga gcctgcttgc ttctaggcag
      181 agtacggtca gacgaaaaac tctatcattt tcctcagaaa gattttccaa tcactaagtg
      241 tttaaagtgg aaaggtcaac taactgattg gcaacaaaga atttcagatg gactagttgc
      301 aaacgtggaa aataatcgtg cgacattggt tcatgcagta acaggagcag gtaagacaga
      361 aatgatctac cacaccgttg cctcagtgat tgataaaggc ggagcggttt gcctagccag
      421 tcctcgaatt gatgtttgta tcgaactcta taaacgtctg caaaatgact tttcagttcc
      481 aattagttta ctacatggag agtctgaacc ctatttccga accccattag ttgtagcaac
      541 cacacatcag ttattaaaat tttatcaggc ctttgatttg gttttgattg atgaagtaga
      601 cgcctttccc tatgcagata atcccatgct ctatcaagca gcagacaatg cggtcaagga
      661 agccggtgtt caagtttttc tgacagcgac ttcaacagat gaattggata aaaaagtcag
      721 aacaggtaaa ttaagtcgtc ttagtttgcc aaggcgcttt catggcaacc cacttgttgt
      781 cccgcaaaaa gtctggttta gtaaattcga tgatacccta aagaaaaata gactagtccc
      841 aaagttgaaa aaagcgattg aagaacagag aaagtcgggc tttcccttac tcatttttgt
      901 cccagaaatc tccaaaggtc aagaatttac caagataatg aaaaaaacat tcccagaaga
      961 aacaattggc tttgtatcca gtcaaacaga aaatcgcctt gaaatagttg aagggtttcg
     1021 caagagagaa atcacagtct taatctcgac tactattctt gaacgtgggg tgaccttccc
     1081 atgtgtagac gtctttgttg ttcaagctaa tcattacctc tacacagcgt caagtcttgt
     1141 tcagattgca ggccgggtcg gaaggagtat agaacgtccg actggtttac ttcagtttta
     1201 tcatgaggga agtacaggag ccattgaaaa ggcaatcgct gaaattaaac agatgaacaa
     1261 ggaggctggt tatgtctaat tgtctattgt gcggtcaagc tatgaaaaat aaaacaagat
     1321 tttcagatct catcttcttt agtaaagaaa aatcgggcat ctgtgaagaa tgtttttcga
     1381 cttttgagga aatagcagag caacactgtc cacattgtta taaaaatgga gaatcggaaa
     1441 gttgcaagga ttgtcagtac tggcagaatc aagggaaacc agttgtccac acagctttgt
     1501 accaatataa tcaagcgatg gcacattatt ttagtcgcta caaatttcaa ggagactatg
     1561 ttttaagaaa tatttttgct aaaaagctta gaatagcgtt aagccaattt cctgactaca
     1621 caattgttcc cataccaatt agtcaaaaac gactatcaga acgcggtttt aatcaagtgg
     1681 aaggactttt ggatgctaca aatattcctt atcagtccct tcttggaaag tatgaaagcc
     1741 aaaaacaatc atctaaaaat cgtgcagaga gactagaagc aaaacagatg ttctatctat
     1801 tagatgaaaa agaagtgcca gaaaaaatat tattattcga cgatatatat acaacaggag
     1861 ccacaatcca acttgctgta gaacttttca tgaaaattgg taggaaagaa atcaaaacat
     1921 tttcactaac acgataagaa aacggttgca atattcctat aatgtggtat aataatagtg
     1981 aagaaaggcg aaagccaaga aagaggtact aatatgatta aattcagtat tcgtggagaa
     2041 aaccttgaag ttacagaagc acttcgcacc tatgtagaag agaaagtggc taagattgag
     2101 aaatatttca atgaagaaca agagttgaat gctaaagtaa atctaaaagt ttaccgtgac
     2161 aagcgcgcaa aagtagaagt gacaattcca gttggagcag ttacacttcg cgcagaagat
     2221 atttcacaag aaatgtatgg ctctatcgat cttgtagtag ataagattga acgccaaatt
     2281 cgtcgtaaca aaaccaagat tgaacgaaaa catcgtcaaa aagtggcaac tggtcaagtc
     2341 tttacagatg aacttgttga gcaaacaggt gaggaagtaa aagtggttcg tactaagcaa
     2401 gtagacttga aaccaatgga tatggaagaa gcagtcctcc aattggagtt gctcggacac
     2461 gatttcttta tctatacaga tgctaatgac ggtacaacaa atgtattgta tagacgcgaa
     2521 gatggagatt tgggtcttct agaagtacgt caataaagat aataaaacag ttgcagtttt
     2581 tgcagctgtt ttattatt
//
LOCUS       DASGCC010000163         2562 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.164, whole genome shotgun sequence.
ACCESSION   DASGCC010000163 DASGCC010000000
VERSION     DASGCC010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.164"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            25..783
                     /locus_tag="U1404_001825"
     CDS             25..783
                     /locus_tag="U1404_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5348736.1"
                     /translation="MKSNKEQKYFWLTFSLIVALMIWWFLSNYDRTSRSFPNIILVWN
                     ALLIMIDKGFIFEDIFSSLTSVFFGFTSGFLLSVPNALFMSWYSPYRNIVYPWIQYIR
                     NIPPLAYVPLVVISAGVGLLPQVIVIAIATFLTMTVTIYQGIINIDPNLIKAARILGA
                     SDFEIFKRILVPASIPFIMTAVRLGTSISLTTIIAAESTGATSGMGMRIRSLNNSFDS
                     SGMLLYIILIGVIGLLLNKLVDLIERKLTGWQQK"
     gene            768..1559
                     /locus_tag="U1404_001826"
     CDS             768..1559
                     /locus_tag="U1404_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348737.1"
                     /translation="MATEVKKIKVKIEEVSKSFQSIHGEVVALNQINLEIFENEIVTV
                     VGPSGCGKSTLLNLVAGLEPVTSGKIYCDDNEIVGVGVERGVVFQQYALFPWMSVQQN
                     VMFGPEMQGKSKLEASEIANKYIKMVGLQEFSNHYPKELSGGMKQRVAIARAYAVNPT
                     ILLMDEPFGALDAQTRIQLQDELIEMLEHERKTCLFITHDIEEAILLGNRVIIMSSRP
                     GEIKEIVNVDLPFPRSQSIKFENDFIDIKNHIWSLVYKDFLNIKK"
     gene            1590..>2562
                     /locus_tag="U1404_001827"
     CDS             1590..>2562
                     /locus_tag="U1404_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5348738.1"
                     /translation="MIKFVKNKYFNWIISLITLIILVACSSNQTLIRDNSANIDKIRI
                     AYMPNFASLHDIITGINSGIFKEEGLEVELIEFADGPTIIASLESGSIDIGNIGPGAH
                     KLAIEGRAEVVAFSQLGNADELIARSDRGIDSIKDLRGKKIGTASGTSAETILKLALL
                     DANLSEKDVEIIDMDASAIVTAMLSGSIDVAATWSPNTTLIKRELKEKVVVLADNSRY
                     RDQSPAIASYVTFPGYSEKNNEKISKFLKGLYRAMDYRAEHMKEVSKWVATQIGSDIT
                     AVQDQLQDGEWLTSRQMIQLINTGILQQYYEKQQKNLIVSGIVDISRN"
BASE COUNT          857 a          348 c          517 g          840 t
ORIGIN      
        1 atttgtaact atgggaggat aaagatgaag agcaacaaag aacaaaaata tttttggttg
       61 acattctcat tgattgttgc attgatgatt tggtggtttt tatcgaatta tgatcgaacc
      121 tctcgtagtt ttccaaatat cattttggtt tggaatgctt tattaatcat gatagacaaa
      181 gggtttatct ttgaagatat attttcaagt ctaacttcag ttttcttcgg gttcacgtcg
      241 ggctttctat tgtcggtgcc taatgcattg tttatgtcct ggtattctcc atatcgtaac
      301 attgtatatc cttggataca atatatcaga aatatcccac cacttgcgta tgttccttta
      361 gtagtaattt cggctggggt cgggctgtta cctcaagtta ttgtaatagc gatagctact
      421 tttctgacta tgactgtaac aatttatcaa ggcattatta atattgatcc aaatttaatt
      481 aaagcagcaa gaattttagg tgcatcagat tttgaaatat ttaaaagaat tttggttcca
      541 gcatccattc catttattat gacagctgtc agattaggta catcgatttc tttaactaca
      601 atcattgcag ctgaatctac tggtgctaca tcaggtatgg gaatgagaat acggtcttta
      661 aataactctt ttgattcctc aggaatgctt ttgtatatca tattgattgg agtaattggt
      721 ttactgttaa ataagttagt tgatttgata gaaaggaagt taactggatg gcaacagaag
      781 taaaaaaaat taaggtcaaa attgaagaag tttcaaaatc atttcagtca attcatggtg
      841 aggttgttgc actaaatcaa ataaatttag aaatctttga gaatgaaatt gttacagttg
      901 ttggtccatc aggttgtggt aaatctactc tactaaactt ggttgcaggt ttggaacctg
      961 taacttccgg gaaaatttat tgtgatgata atgaaattgt tggcgttgga gttgagcgtg
     1021 gtgttgtttt tcaacaatat gcactatttc cttggatgag tgtacaacag aatgtaatgt
     1081 tcggacctga aatgcaagga aaatcaaagt tagaagctag cgaaatagct aacaagtata
     1141 ttaaaatggt tggattacaa gaattttcca atcattatcc gaaagaatta tcgggaggaa
     1201 tgaagcaaag agttgcaata gcaagagcgt atgctgttaa tccgacgatt ctattaatgg
     1261 atgaaccatt tggagcctta gatgcccaaa cgaggattca actgcaagat gaattgattg
     1321 aaatgctgga acatgaacga aaaacatgtt tgtttatcac acatgatatt gaggaagcaa
     1381 tacttctagg aaatcgagta attattatga gttcaaggcc gggagaaatt aaagaaattg
     1441 tgaatgttga tttaccgttt ccaagaagtc aatccataaa atttgaaaat gattttatag
     1501 atattaagaa ccacatttgg tcacttgtat ataaggattt tcttaatatt aaaaagtgac
     1561 acacttatac tcttttttga gagggaaaaa tgattaaatt tgttaagaat aagtatttca
     1621 attggattat tagtctaatc actttaatta ttttggttgc atgtagttct aatcaaactt
     1681 taataagaga caattcagcc aatatagata aaataagaat tgcatatatg ccaaattttg
     1741 caagtcttca tgacattatt actggaataa attcaggtat ctttaaagag gaggggcttg
     1801 aagtcgaatt gattgaattt gctgatggtc caactatcat tgcatcttta gagtcaggtt
     1861 caattgatat tggtaatatt ggtccgggtg cccataaatt ggcgattgaa ggtagagcag
     1921 aagttgttgc atttagtcaa cttgggaatg ctgacgaatt gattgctcgg tcggatagag
     1981 gaattgattc aataaaggat ttgaggggaa agaaaattgg aacagcatct gggacatcag
     2041 cagaaacaat tctaaagctt gctttgttag atgcaaattt gtctgaaaaa gatgtagaaa
     2101 ttattgatat ggatgcctcc gctattgtta cagcgatgtt gtcgggatca atagatgtag
     2161 ctgcaacttg gtcacctaat acaactttaa taaagcgaga attaaaggaa aaagttgttg
     2221 tattagctga taattcacgt tatagagacc aatctccagc tattgcttca tatgtaactt
     2281 ttccggggta ttctgaaaaa aacaatgaaa aaatttccaa gtttttaaaa gggttatatc
     2341 gtgcaatgga ttatcgagct gaacatatga aggaagtttc aaaatgggtt gctacccaaa
     2401 tcggttcaga tatcacagct gttcaagatc aactacaaga tggagagtgg ttaacaagta
     2461 gacaaatgat tcaattgatt aacactggga tacttcaaca gtattacgag aaacaacaaa
     2521 aaaatttaat agtatctgga atagtagata tctctaggaa ca
//
LOCUS       DASGCC010000164         2427 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.165, whole genome shotgun sequence.
ACCESSION   DASGCC010000164 DASGCC010000000
VERSION     DASGCC010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.165"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(21..1811)
                     /gene="pepF"
                     /locus_tag="U1404_001828"
     CDS             complement(21..1811)
                     /gene="pepF"
                     /locus_tag="U1404_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM5348739.1"
                     /translation="MTNAMPKRQEIDVQLTWDTDILFPTPDNYKENLAAYAKQVTAFE
                     SNYKGKLTDKDTIVSALTEYEKIVILDSRLSHYAFLPLEVDKMNTELASLANEYDLVS
                     AKARPQRDFLYSELGQLDEAFLLELKDEQPQWAAFFDAILRDKPHQLHPLQEELLSNF
                     APTFGQPYNNYGVTKFEDMTFENFEANGQTLDNSYVLFENDYELSHDTEIRRNSAAGF
                     YSTLKKYKNTTAATYLSHIKNEQIEARLRGFDNTIDFLLHSQNVSRDLFDRQIDVIMK
                     ELAPHMRRYVKLVAKAHGLDKITHADLKISLPSEYNQRITPEESKQFLIDCLGILGED
                     YVKMIEQSFDERWIDFAQNEGKATGGFCATLYDGPSYILLSWTGLMNEVLVLAHELGH
                     AGHFQLAKKQSVLSYDPSLYFIEAPSTANEVLTCNTLLKNNQDPGFQAYLISELISRT
                     YFHNMVTHLLEAAFQREVYTRLDNEEYLNGDILCQIKLDVIKEFWGEDFEIGDDAGLI
                     WMRQPHYYIGLYPYTYSAGLTIGTAMAKQLEEHPEEVVEKWLETLSLGASLSAQDLAK
                     HAGVDVSTDQPLKETIAYVGSLVDKLETLI"
     gene            1978..2316
                     /locus_tag="U1404_001829"
     CDS             1978..2316
                     /locus_tag="U1404_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002264292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348740.1"
                     /translation="MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETWRKNLAQVT
                     KKVVLDLEEAHTERPTISMVQSQVEHRLLDAGYISIAEHYISYRLQRDLERNGYGDKI
                     IVHLRFEQVR"
BASE COUNT          717 a          455 c          524 g          731 t
ORIGIN      
        1 gttcaagtct tttatgtgtc ttagattagt gtttccagtt tatccaccaa tgaaccaaca
       61 taggcaatgg tttctttgag tggttggtca gttgaaacgt caacacctgc gtgcttagca
      121 aggtcttggg cagaaagact tgcaccgagt gacaaggttt ccaaccattt ttcaacaact
      181 tcttcaggat gttcttccaa ttgcttagcc atagccgtac cgatggtcaa accagctgag
      241 taggtatatg gatacaaacc aatgtagtag tgtggttgac gcatccagat aagacctgca
      301 tcgtcaccga tttcaaagtc ttcaccccag aattccttga tgacatccaa cttgatttgg
      361 cagagaatat caccgttgag gtattcttca ttgtccaaac gagtgtagac ttcacgttgg
      421 aaggctgctt caagcaagtg agtgaccatg ttgtggaagt aagtacggct gatcaactcg
      481 ctaatcaagt aagcctggaa gccagggtct tggttgtttt tcaaaagggt gttacatgtc
      541 aagacttcat ttgcagtaga aggcgcctcg atgaagtaga gggatggatc gtagctaagg
      601 acactttgtt tcttagccaa ttggaaatga ccagcatgtc ccaattcgtg agccaatacc
      661 aagacctcgt tcatcaagcc tgtccatgaa agtaggatgt aagatggtcc atcgtaaaga
      721 gtagcacaga agccaccagt agccttacct tcgttttgag caaagtcaat ccaacgctca
      781 tcaaatgatt gttcaatcat tttcacataa tcttcaccaa gaatgcccag gcagtcaatc
      841 aagaattgtt tggattcttc aggtgtgatg cgttggttgt attcagatgg tagactgatt
      901 ttcaagtcag catgtgtgat cttgtccaat ccatgagcct tagcaaccaa ttttacatag
      961 cgacgcatgt gaggagccaa ttctttcatg atgacatcaa tctgacggtc gaagagatca
     1021 cgagagacat tttgactatg caagaggaag tcaatcgtat tgtcaaatcc acgcaagcga
     1081 gcttcgattt gctcattctt gatatgagac aaataagttg ctgcagttgt attcttgtat
     1141 ttcttcaagg ttgaatagaa accagcagct gaattgcgac ggatttcggt atcgtggctg
     1201 agctcataat cattttcaaa gagcacatag ctattgtcga gcgtttgacc atttgcctcg
     1261 aagttttcaa atgtcatatc ttcaaacttg gtcacaccgt agttgttata gggctgacca
     1321 aatgttggag caaaatttga taaaagttct tcttgtagtg gatgaagctg atgcggcttg
     1381 tcacggagaa tagcatcgaa gaaagcagcc cattgtggtt gttcatcttt taattcaagt
     1441 agaaaggctt catctaattg cccaagttct gaatagagga aatctcgttg aggacgtgcc
     1501 ttggcagaaa cgaggtcgta ttcgttggcc aggctcgcca attcagtatt catcttatcg
     1561 acttccaaag gaaggaaggc atagtgggaa agtctgctat caagaataac gattttttcg
     1621 tattctgtta aggcggaaac gatggtatcc ttatcagtta gctttccttt gtaattcgat
     1681 tcgaaagctg tcacttgctt agcgtaggct gccaaatttt ctttgtagtt atcaggggtc
     1741 ggaaatagaa tgtccgtatc ccaagttaat tgcacatcaa tttcttgacg tttaggcatt
     1801 gcatttgtca tgattttctc cttatttcat tttaataggt ccattatatc atactaaagg
     1861 gctttcagcg aaaataagcc aaggcaaaat ttatgaaaaa gaatacttga caaaatacac
     1921 aaaaacctag ataatgtaag tatgaaaggg tttactgaaa accagaaagg agcttttatg
     1981 caagtcatta aacgtagtgg agagattgtt gaatttgatc cagataaaat ctaccaagcc
     2041 atcattaaag ctgcacagac agtctatgtc attgatgaaa cttggcggaa aaatcttgct
     2101 caggtcacaa agaaagtagt gcttgacttg gaagaagctc atacagagcg accaacgatt
     2161 agcatggttc agtcgcaagt tgaacatcgt cttttagatg cagggtatat ttctattgct
     2221 gagcattaca tttcctatcg cttgcaacgt gatttagaac gtaacggcta tggcgataag
     2281 attattgtac atctgcgttt tgaacaagta cgttaagaga aacctagaga aatctaggtt
     2341 tttgctttta tatatcttta cattgtttaa agaaaatagc atttcaaaaa ctttttgaaa
     2401 aaaatgtgat attctgagca tattttt
//
LOCUS       DASGCC010000165         2377 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.166, whole genome shotgun sequence.
ACCESSION   DASGCC010000165 DASGCC010000000
VERSION     DASGCC010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.166"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(47..2065)
                     /gene="recG"
                     /locus_tag="U1404_001830"
     CDS             complement(47..2065)
                     /gene="recG"
                     /locus_tag="U1404_001830"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEM5348741.1"
                     /translation="MKRLCDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDF
                     ESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLA
                     DKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
                     DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQL
                     QLQMLKANNRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMN
                     RLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLFPELSIALL
                     TGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRL
                     FREKGDNPDVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTV
                     LDWLERELEVGAQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKN
                     DEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGR
                     GHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEF
                     QVANIIEDYPILEEARRVASQIVSVENWQEDPNWSILLANLKDREELD"
     gene            complement(2184..2255)
                     /locus_tag="U1404_001831"
     tRNA            complement(2184..2255)
                     /locus_tag="U1404_001831"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2220..2222),aa:Glu,seq:ttc)
     gene            complement(2278..2350)
                     /locus_tag="U1404_001832"
     tRNA            complement(2278..2350)
                     /locus_tag="U1404_001832"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2315..2317),aa:Asn,seq:gtt)
BASE COUNT          752 a          614 c          366 g          645 t
ORIGIN      
        1 aatatgtcaa aagaccaaca caggtgtgtt ggcctttttt atatgactag tccaattcct
       61 ctcgatcttt caaattagca agcaaaatcg accaattagg gtcctcctgc caattttcca
      121 cgctaacaat ctgactagca actcgtcttg cttcctctaa aattggatag tcctcgataa
      181 tatttgcaac ctgaaattct ggcaaacctg attgacgagt cccaaatatt tctccagacc
      241 cacgcatttt taagtctgct tcagccaaaa taaaaccatc tgtcgtctct gtcataattt
      301 tcatgcgttc cttaccagac tctgttttag gattagcaac taacactgca taagactgct
      361 tatgaccacg tcctacacgc cctctcaact gatgtaattg gcttaaacca aaacgatctg
      421 catccataat aaccatcacc gttgcattgg gcacattgac tccgacttca ataacagtgg
      481 tagaaaccaa aatattcgtt tttcgctcct taaaagcctg catgatggca tctttctcgt
      541 cattcttcat cttaccgtgt aacaaatcca ctgtaacttg ctctccaaaa tgcgcctgta
      601 aatcagattg cagatctaca gcattcttta aatctagagc ctcagattct tcaattagcg
      661 gagagataaa ataaacctga gcacccactt ctaactcccg ctccaaccaa tctaagaccg
      721 tgggcagctg ttgatgtttg acccagcgag tgataattgg cttccgacca gcaggtaact
      781 gattaataat cgatacatcc atatctccaa aagctgtaat ggctaatgtc cgaggaatag
      841 gtgtagcagt catcataagc acatccggat tatcaccctt ctcacgaaac agacggcgct
      901 gtttaacacc aaaacgatgt tgctcatccg tcacaaccaa accaagctta tggtacgtca
      961 cactttcctg tataagagca tgagttccta caatgatgtc tacctgacca ctagaaatcg
     1021 cctctaaagc agtacgacgc tccgcagcct tcattccacc tgtcaaaaga gcaatagaaa
     1081 gttctggaaa aagctggcgc aaactctcaa agtgttgctc agccaaaatt tctgtcggca
     1141 ccataattgc agcctgcatc cccgcagtca cagcagcaaa catagccaat ccagcaacta
     1201 ctgtcttccc tgaaccaaca tccccttgta acaaacgatt catgtgccca taggacttca
     1261 tatctgatag tatttcagcc aaagccccag actgagcatc tgttaagaca aacggcaatt
     1321 gtcttatttg catagccaat ctatcagcat cataggcaat cttcaaacca ttcgaaatat
     1381 cacgattgtt ggctttcagc atttgcaact gtaattgaaa ataaaataat tcctcaaact
     1441 tcatacgtcg caaagcttgt ctatactctt ctaaatttgt aggaaaatgc atcgcaaaaa
     1501 ccgcctctcg gcgattcatt aaccgatagc gctctcgtaa aactgatggc aagttctcct
     1561 ctaataaatg caaatatccc tgatcaatag ctgttttaat agccttaacc aaatttactt
     1621 gcgaaatccc ttgcgccaca tgatagacag gttggagctc atctgatact tgagccaaaa
     1681 ttttcattcc tgtcaaactt gccttagcct tatcccactt tccccaaact gcaatatcct
     1741 gccccaaaac aatcttatct gctaaataag gctgattaaa aaacgaaact gctaagacaa
     1801 cctcaccctg tttcattgaa aaacggagtc tatttctttt gtaaccataa tactgtacat
     1861 tagctggaga taccacctcc ccaactacca ctgccttctc cccatcctgc aaatcataaa
     1921 tagacttact ctcaaaatct tcatatctaa atggatagta agtcagcaaa tcattaatat
     1981 tctgaatatt aatttttaag aatttttcag ccgattttgg accaatccct ggcaaaaccg
     2041 ataattcatc acataatctt ttcatgtctc tattatatca acaaacaatg aatagacaaa
     2101 gtaacaagaa aagaaaaaag agccaaatta aagcccatac acctcaaaaa acaaaaaaaa
     2161 gagacctaag cagcctccaa atatagtccg tacgggattc gaacccgtgt taccgccgtg
     2221 aaaaggcggt gtcttaaccc cttgaccaac ggaccatata ctaaagattt ctctttactc
     2281 cgccaacagg gctcgaacct gtgacatcat gattaacagt catgcgctct accaactgag
     2341 ctatggcgga atatgctaag cgactaccgt atctaac
//
LOCUS       DASGCC010000166         2205 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.167, whole genome shotgun sequence.
ACCESSION   DASGCC010000166 DASGCC010000000
VERSION     DASGCC010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.167"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..502)
                     /locus_tag="U1404_001833"
     CDS             complement(<1..502)
                     /locus_tag="U1404_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEM5348742.1"
                     /translation="MKSRIVSPKTIFIWNLLGSISSAAISIFLLLLVTRLLTELEADI
                     FSFAYAVANLFVIIASFQVRDYQATDVSKKFSFSQYLATRLITITIMLLLALSYIFLS
                     KYEFQKSACIFLICLYRGSDALSDVFQGLFQQNARLDIAGKSLFLRNSIVILTFGFGL
                     FITNNLL"
     gene            complement(535..>2205)
                     /locus_tag="U1404_001834"
     CDS             complement(535..>2205)
                     /locus_tag="U1404_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnan synthesis protein F"
                     /protein_id="HEM5348743.1"
                     /translation="YIYYQLKSIRSIYSDIVFVSNSHVSKDIVQYLQSERLIDFFIQR
                     DNIGYDFAAWKEGLNQVTFYQYDSVTLMNDTCFGPLWDLEDYYSQFDSDVDVDFWGMT
                     NHLETKIDSVVVPEHLQSYFMVFKKQILQSQAFVGFWSSVSELTDIQDVIKLYESQLT
                     KILLSEGYSYKCVLDTSIYCKTLENSNITLEYPEVILKNNVPFIKIKSFTEYPDRIYS
                     LLHLIRMKTKYPVELIERHLRQIIIPGTSFIPPIRVSQTTETVRSSTSVLLHVHIESV
                     SIFEEYIEELCKISDRCQLLITLPETDFSNKCSIVERYLSTYKLRAQIAKLTDELHFF
                     EIVNNYMGDAKYLAHVTVKQTKEIKYSVEDIIDRHQLRKMFFTSFDAVISNFESQSNL
                     AVVIPDLTTNQRYDRQSLREGNPELIRQLNILYESLVRTKKVDFYKVPYIIGEEVSWY
                     WIKTEHYKKIEEKFRSIDFSKEDRLLLVPILFIYSAWDLSNDYAVVENTENVSPILEK
                     ISFSSERELRLIIEEKEFLQIGLRRTLKIISVGIVSVFKMIKKSLLKN"
BASE COUNT          746 a          411 c          290 g          758 t
ORIGIN      
        1 gtagcaggtt attggttata aacaaaccaa atccaaatgt caaaatcaca atagagtttc
       61 tcaaaaaaag tgatttacct gcaatatcta gccgagcatt ttgttggaac aatccttgaa
      121 aaacatccga tagagcatca cttccacgat acaaacatat taggaaaata caagcagatt
      181 tttgaaattc atatttagac agaaaaatat agcttaaggc aagtaatagc ataatagtga
      241 ttgttataag ccttgttgca agatactggc taaacgaaaa ctttttcgaa acatcagtcg
      301 cttgataatc tcttacctga aaactagcaa tgattacaaa aagatttgct actgcataag
      361 caaaactaaa aatatcagcc tctaattccg tcaacaaacg tgttactagt aacaataaaa
      421 atattgatat tgctgctgaa gaaatacttc ctaataaatt ccaaataaat attgtttttg
      481 gtgatactat tctgctcttc acactatctt ccccttgttt gtcatccgtt atccctaatt
      541 ttttaataga gatttcttta tcatcttaaa cacgcttaca attccaactg atattatctt
      601 tagtgtcctt ctcagtccaa tttgtaaaaa ttccttttct tcaataatta aacgcaattc
      661 tctttcgcta gaaaaactaa tcttttccaa gattggactc acattttcag tattctcgac
      721 cactgcataa tcgtttgata aatcccacgc gctataaata aataatattg gaactagcaa
      781 taatctatct tcttttgaaa aatcaatgct tctaaatttc tcctcaatct ttttatagtg
      841 ttctgttttt atccaatacc aacttacttc ttctccaatt atataaggca ctttataaaa
      901 atcaactttc ttagttctca caagtgattc ataaagtatg ttcaattgac gaataagttc
      961 tggattgccc tctcgaagac tttgtctatc atatctttga ttagttgtta agtctggaat
     1021 aactacagcc aaattagatt gtgattcaaa attagaaatc actgcatcaa atgatgtaaa
     1081 aaacattttc ctcaactgat gcctgtcaat aatatcctct acagaatatt ttatttcctt
     1141 tgtttgtttg acagttacat gagcaagata tttggcatct cccatatagt tgtttactat
     1201 ttcaaaaaaa tgcaattcat ctgtgagttt tgcaatttgg gctcgcaatt tgtaagtaga
     1261 caaatatctc tcaactatac tacacttatt tgaaaaatca gtttctggca atgttattag
     1321 taactgacac ctatcagata ttttgcataa ctcttcaata tactcttcaa aaatagacac
     1381 tgattctatg tgaacatgaa gaagtaccga cgtcgaagaa cgaacggtct ccgtcgtttg
     1441 cgaaacccgt attggaggaa taaaactcgt acccggaata attatctgcc tcaaatgcct
     1501 ctcgattaat tcaactggat atttcgtttt catccttata agatgtaata aagagtatat
     1561 tctgtctgga tattcggtaa aactctttat ttttatgaat ggaacattat ttttaagtat
     1621 aacttctgga tattctaatg taatgttgct attttcaagg gttttacaat aaatggacgt
     1681 atctaataca cacttatagc tataaccctc tgataaaagt atttttgtca attggctctc
     1741 atataatttt ataacatctt gaatatctgt taactcactt accgatgacc aaaaaccaac
     1801 aaatgcttga ctctgcaaga tttgtttttt aaataccata aaatatgact gtaaatgttc
     1861 cgggacaact acactatcta tttttgtctc taagtgattg gtcatccccc aaaaatctac
     1921 atcaacatca ctgtcaaatt gactataata atcctctagg tcccagaggg ggccgaaaca
     1981 tgtatcattc atcagagtta ccgaatcata ttgataaaat gttacttgat tcagcccttc
     2041 tttccatgcc gcaaaatcat aaccaatatt atctctttgg ataaaaaaat caatcagtcg
     2101 ttccgactgt aaatattgta ctatgtcctt tgaaacatgg ctgttagaaa caaaaactat
     2161 gtctgaataa atacttcgta tcgactttaa ttgataataa atata
//
LOCUS       DASGCC010000167         2204 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.168, whole genome shotgun sequence.
ACCESSION   DASGCC010000167 DASGCC010000000
VERSION     DASGCC010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.168"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..582
                     /locus_tag="U1404_001835"
     CDS             <1..582
                     /locus_tag="U1404_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HEM5348744.1"
                     /translation="WIQKRRLPILILGLGLVLLVSYLFLHNRGGVVHFVKVMINSLFI
                     NNRNDHLNGILTVGIFGYFGWFVTQLPLWLIFIDIFIFTLLLFNDGNLKISKTEGLVS
                     LFVLPVQVAIIVAGMYFAWTPTAIGPNAMISQGAQGRYFTPFLVYLFPACLMLKEQVS
                     VSVKQKYLIRWITGTVVINFIMYLFLIVDYYWL"
     gene            605..1594
                     /locus_tag="U1404_001836"
     CDS             605..1594
                     /locus_tag="U1404_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HEM5348745.1"
                     /translation="MNILFTLNDAFVPQVAACMGSIMRTLNEDDTCHFYLFSDGISQQ
                     NKEKLHQFVTDGGNKLTIVELENLESYFDFEVDTNGWASVVLARLLVDKLLPKEVDRI
                     IYLDGDTLVLENIRELWEVDLEGKVLGMCPEPTASSERREGLNLGTYTYHNAGVLLID
                     LKRWRSKSIGTIIFDYYKEKNGELFANDQDALNGALKEEIKTLSITYNYFNIFDVYPY
                     RTLEKLSRPSTFISKEEFVKIRKQPRIVHFLGEERPWRIGNKHRFREDYVSALNQTPW
                     RGTQFESGWQFYFFCFNLFNMIMKPFPMLRYKIITVLIPVFMKYRKIRLQKGV"
     gene            1597..>2204
                     /locus_tag="U1404_001837"
     CDS             1597..>2204
                     /locus_tag="U1404_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5348746.1"
                     /translation="MKFSVIIPAYNVADYLEECVYSVLNQTYEEFEILLVDDGSTDGI
                     TSNICDKLAAKDDRVKVFHQTNGGQSIARNTGIKNASGDYILFLDGDDFWTDVHFLDE
                     INEEIHSHEEVVDAVIYPFSYWYGNADIRVRDFPQKLPRHEIITDSVLLVETGALIAP
                     VWNKCVRRELFADSLMFPDGLMYEDGIWCADLLKIITCCCVI"
BASE COUNT          701 a          290 c          459 g          754 t
ORIGIN      
        1 tggattcaaa agagaagatt accaattctt attttgggat taggactagt tttacttgtt
       61 agctatctat tcctacataa tagaggtggt gtcgtgcact ttgtgaaagt gatgataaac
      121 agtttattta tcaataacag aaacgatcat cttaatggta ttttaacagt tggtattttt
      181 ggttattttg gctggtttgt cactcaacta cctctctggt taattttcat agatattttc
      241 atttttacgc tattattatt taatgatgga aatttaaaga taagtaaaac agaaggtctt
      301 gtgtcgttat ttgtactccc tgttcaggta gctatcattg tagcgggcat gtattttgca
      361 tggacaccga cagctattgg gccaaatgca atgatttctc aaggggcaca aggaagatac
      421 tttactccat ttttagtcta tctatttccg gcatgtttaa tgttaaaaga gcaggtaagt
      481 gtatcggtaa aacagaagta tttgatacgg tggatcactg gcacagtagt cattaacttt
      541 atcatgtatc tatttttgat agtagattat tattggttgt aagaagatag tggaagaggg
      601 aaacgtgaat atattattta cattgaatga tgcttttgtc ccgcaagttg cagcttgtat
      661 gggctcaatc atgcgaacat taaacgaaga cgatacatgc catttttatc ttttctcaga
      721 tggtataagt caacagaata aagaaaaact tcatcaattt gttaccgacg gaggaaataa
      781 attgacaatc gttgaattgg aaaacttgga atcatatttt gattttgaag ttgacacaaa
      841 tggttgggct tcggttgtac ttgcaagatt acttgtagat aaattactac ccaaagaagt
      901 tgatagaatc atttatttag atggagatac tttagtttta gagaatattc gggagctatg
      961 ggaagtagat ttggagggga aagtccttgg aatgtgccca gaaccgacag cttcgtctga
     1021 gagaagagaa ggcttaaatt tgggtacgta tacatatcat aatgcgggag ttcttctaat
     1081 cgatttgaaa cggtggcgtt caaaaagtat aggaacaatt atttttgatt attataaaga
     1141 aaaaaatgga gagctttttg ctaatgatca agatgcactg aatggagcat tgaaagaaga
     1201 gataaaaaca ctctcaatca cttataatta ttttaatatt tttgatgttt atccatatcg
     1261 tacgttggaa aaattaagta ggccttcaac gtttatttca aaagaagaat ttgtaaaaat
     1321 tcgtaagcaa ccacgtattg ttcatttttt aggtgaagaa cgtccatgga gaatcggaaa
     1381 taaacatcga tttagagaag actatgtttc tgcattaaat cagacgccat ggagaggtac
     1441 tcaatttgag agtggttggc agttttactt tttctgcttt aatcttttta acatgattat
     1501 gaagcctttt cctatgttgc gctataaaat tattacagtc ttaattcctg tattcatgaa
     1561 atataggaaa attagattac aaaaaggagt ctaggtgtga agttttccgt tattatccca
     1621 gcgtacaatg ttgctgatta tctggaagaa tgtgtgtata gtgtactgaa tcagacttat
     1681 gaagaatttg aaatattgtt ggtagatgac ggttctacag atggtataac ctccaatata
     1741 tgcgataaat tagcagctaa agatgatagg gtgaaggtat ttcatcaaac taatggtggg
     1801 caatcaattg cgagaaatac aggaataaaa aatgctagtg gtgattatat tttatttcta
     1861 gatggtgatg atttttggac tgatgtgcat tttttagatg aaatcaatga agaaatacac
     1921 tctcacgagg aagtggtaga tgcagtaatt tatccatttt catactggta tggtaatgct
     1981 gatataagag ttcgtgattt ccctcaaaaa ttacctagac atgaaattat tactgattct
     2041 gttctacttg tagaaacagg cgcattgatt gctcctgttt ggaacaagtg tgttcgcaga
     2101 gaactatttg cagattcttt gatgtttcca gatgggttaa tgtacgaaga tggtatttgg
     2161 tgtgcagacc tattaaaaat aataacttgt tgttgtgtca ttga
//
LOCUS       DASGCC010000168         2200 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.169, whole genome shotgun sequence.
ACCESSION   DASGCC010000168 DASGCC010000000
VERSION     DASGCC010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.169"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            36..680
                     /locus_tag="U1404_001838"
     CDS             36..680
                     /locus_tag="U1404_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEM5348747.1"
                     /translation="MTELLDIYRTLKSKTWVDLTHQINEKSPHFPALPALEKKALFTH
                     KDGFFVEQFTVVGQYGTHLDPPIHFVEGARYLDEIDLKDLLLPLYVIDKSAAVIENND
                     YEITKQDILDFEAEYGPIAPKSFVAFRSDLSKRWPSQDAIRNLDEDGVQRTPGWSHEA
                     LEYLIEERQVKAVGHETLDTDLGVSAAKHGGSLSEEYYLLSKDIYQLEVLANLD"
     gene            complement(824..2173)
                     /gene="gorA"
                     /locus_tag="U1404_001839"
     CDS             complement(824..2173)
                     /gene="gorA"
                     /locus_tag="U1404_001839"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEM5348748.1"
                     /translation="MKVFDIIAIGGGSGGIATMNRAAMYGAKAAVIEGSYLGGTCVNL
                     GCVPKKIMWYGSQVAEAIQHYGPEYGFTSQEVTFDFATLRKNREAYIERSRASYGNTF
                     NNNGVEVIQGFARFVDNQTVEVNGELIRAKHIVIATGAKPVVPAIPGSELGIVSDDVF
                     AWEELPSSVAVIGAGYIAVEMAGLLHGLGVQTDLFVRGNRPLRSFDTYIVDALMEEMQ
                     RTNLPLHTGKTPVSLEKTDDGQIQINFADGSNHIAQKVLWAIGRKPNIDKLNLKATSV
                     QLTSSGHISVNEYQETAVPGIYALGDVTGEKELTPVAIKAGRLLAERLFNNKPTAKMD
                     YTTIPTVVFSHPAIGTVGLTEDEAITQYGQDNVKVYTSAFTSMYTALENNRQMAKFKL
                     VTVGENEKVVGLHGIGYGVDEMIQGFSVAIKMGATKEEFDAVVAIHPTGSEEFVTMR"
BASE COUNT          635 a          466 c          463 g          636 t
ORIGIN      
        1 tgctagaata ataaaaaaag aaagtgagaa tttctatgac agaattactt gatatttacc
       61 gtactcttaa atctaaaact tgggtagact tgactcacca aatcaatgaa aagagcccgc
      121 atttccctgc gctaccagct ctcgaaaaga aagccctatt tactcataag gatggcttct
      181 ttgtcgaaca atttacggtt gtggggcagt acggaaccca tcttgatcct ccgattcatt
      241 ttgtagaagg ggctcgttat cttgatgaga ttgatttgaa agatttactc ctgccactct
      301 acgttattga taaatcagct gctgttatag aaaataatga ctatgagata actaagcagg
      361 atattttaga ctttgaggct gaatatggtc cgatagcgcc aaaatctttt gttgcctttc
      421 gttcggattt gtcaaagcgc tggcccagtc aagatgccat tcgtaatcta gacgaagatg
      481 gagttcaacg tacaccagga tggagtcatg aagctctaga atatttgatt gaagaacgtc
      541 aggtgaaagc agttggtcat gaaacattgg ataccgattt aggagtatct gcagccaaac
      601 acggaggaag tttatcagaa gaatactatc tcctatcaaa agatatttat cagttggaag
      661 tattggcaaa cttggattag gtaccgccaa caggtgcatt gatttcaatc gcttttcctc
      721 attgggagaa ggcttcgggt tcaccagtgc gagcaattgc catattacca taaaaaaaag
      781 tccagacagt gctgaccttc atgtctggac tttttcaatt gagttaacgc atagtaacaa
      841 attcttcaga acctgtcgga tggatggcga caacggcatc aaattcttct tttgtagctc
      901 ccattttgat agcaactgag aatccttgaa tcatttcatc gacaccatag ccaatgccgt
      961 gtagtccaac gactttttca ttttctccca cagttactaa tttaaactta gccatttggc
     1021 gattgttttc tagggcagtg tacatagaag taaaggctga agtatagact tttacattgt
     1081 cctgaccgta ttgggtaatc gcttcgtcct cagttagacc aacggttccg atagcggggt
     1141 gagaaaagac gacagttggg atggttgtgt aatccatttt tgcggttggt ttattgttaa
     1201 ataaacgttc tgccaaaagg cgacctgcct tgattgcaac gggtgttaat tctttttcac
     1261 cagttacatc accgagggca tagatgcctg gtacagctgt ttcttggtat tcattgacag
     1321 aaatatgtcc tgaagaagta agttgaacac tagttgcttt caggttgagt ttgtcaatat
     1381 ttggtttacg tccaattgcc caaaggacct tctgagcaat atggttacta ccgtcagcaa
     1441 agttaatctg gatttgtcca tcatcagttt tttcaagact gacaggagtt ttcccggtat
     1501 ggagtggaag gttggtacgt tgcatttctt ccatcaaggc atcaacaatg taggtatcaa
     1561 agctacgaag agggcgatta ccacgaacaa ataggtcagt ttggacaccg agtccatgta
     1621 ggagaccggc catttccaca gcgatataac cagcaccaat cacagccaca gaagagggta
     1681 attcttccca tgcaaagaca tcgtcagata caatccctag ctcactacca ggaatagcag
     1741 ggactaccgg tttggcgcca gttgcgatga caatgtgttt tgcacgaatc agttcaccat
     1801 tgacttcaac cgtttgatta tccacaaaac gtgcgaaacc ctggataact tctactccgt
     1861 tattgttaaa agtattaccg taggatgcgc gtgaacgctc aatataggct tcgcgatttt
     1921 tacgcaaggt ggcaaaatca aaggtcactt cttggctagt aaatccatat tcaggtccat
     1981 aatgctgaat ggcttctgct acctgagagc cgtaccacat aatttttttg ggtacacagc
     2041 caaggttaac acaagtccct cctagatagc ttccctcaat aactgctgcc ttggcaccgt
     2101 acatagcagc tcggttcatg gtagcgatgc ctccgctccc accaccgata gcgataatat
     2161 caaacacttt cataaatttc ctccaataaa atcattaact
//
LOCUS       DASGCC010000169         2168 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.170, whole genome shotgun sequence.
ACCESSION   DASGCC010000169 DASGCC010000000
VERSION     DASGCC010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.170"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(259..>2168)
                     /locus_tag="U1404_001840"
     rRNA            complement(259..>2168)
                     /locus_tag="U1404_001840"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          488 a          625 c          453 g          602 t
ORIGIN      
        1 aggcgttcta gggcttaact gctgtgttcg gcatgggtac aggtgtatct cctaggctat
       61 cgtcacttaa ctaatgagtc ttgtcaactc aaaattgaat atctatattc taacaagaaa
      121 ccgatcgctt gtcaatattg actcgtgagt aattgtactc gggctaaatc cttggaaaaa
      181 agataacctg ccttgtatgc aagcatactg cgttaggttc ctatttttca ggcggatttg
      241 acgccttcgt tacttagttt ggataagtcc tcgagcgatt agtattggtc cgctacatgt
      301 gtcgccacac ttccacttcc aacctatcta cctgatcatc tctcagggct cttactaaca
      361 taaagttatg ggaaatctca tcttgaggtg ggtttcacac ttagatgctt tcagcgttta
      421 tcccgtccct acatagctac ccagcgatgc ctttggcaag acaactggta caccagcggt
      481 aagtccactc tggtcctctc gtactaggag cagatcctct caaatttcct acgcccgcga
      541 cggataggga ccgaactgtc tcacgacgtt ctgaacccag ctcgcgtgcc gctttaatgg
      601 gcgaacagcc caacccttgg gaccgactac agccccagga tgcgacgagc cgacatcgag
      661 gtgccaaacc tccccgtcga tgtgaactct tgggggagat aagcctgtta tccccagggt
      721 agcttttatc cgttgagcga tggcccttcc atacggaacc accggatcac taagcccgac
      781 tttcgtccct gctcgagttg tagctctcgc agtcaagctc ccttatacct ttacactctg
      841 cgaatgattt ccaaccattc tgagggaacc tttgggcgcc tccgttacct tttaggaggc
      901 gaccgcccca gtcaaactgc ccgtcagaca ctgtctccga tagggataac ctatccgggt
      961 tagagtagcc ataacacaag ggtagtatcc caacagcgcc tccgtcgaaa ctggcgtccc
     1021 gacttcgtag gctcctacct atcctgtaca tgtggtacag atactcaata tcaaactgca
     1081 gtaaagctcc atggggtctt tccgtcctgt cgcgggtaac ctgcatcttc acaggtacta
     1141 aaatttcacc gagtctctcg ttgagacagt gcccaaatca ttacgccttt cgtgcgggtc
     1201 ggaacttacc cgacaaggaa tttcgctacc ttaggaccgt tatagttacg gccgccgttt
     1261 actggggctt caattcagat cttcgcttgc gctaaaccct cctcttaacc ttccagcacc
     1321 gggcaggcgt caccccctat acatcatctt acgatttagc agagagctgt gtttttgata
     1381 aacagttgct tgggcctatt cactgcggct gactttaagc cagcacccct tctcccgaag
     1441 ttacggggtc attttgccga gttccttaac gagagttctc tcgctcacct gaggctactc
     1501 gcctcgacta cctgtgtcgg tttgcggtac gggtagagta tgatacatcg ctagaagctt
     1561 ttctcggcag tgtgacgtca ctaacttcgc tacttaactt cactccccat cacagctcaa
     1621 tgttacagat acaagcattt gactcatatc acacctcact gcttagacgg gcacttccaa
     1681 tcgcccgctt tagttagcct actgcgtccc tccatcactt catactctag tacaggaata
     1741 tcaacctgtt gtccatcgga tacacccttc ggtctctcct taggtcccga ctaacccagg
     1801 gcggacgagc cttcccctgg aaaccttagt cttacggtgg atgggattct cacccatctt
     1861 tcgctactca taccggcatt ctcacttcta tgcgttccag cactcctcac ggtatacctt
     1921 cttcacacat agaacgctct cctaccataa cactaaagtg ttatccacag cttcggtaaa
     1981 ttgttttagc cccggtacat tttcggcgca gggtcactcg actagtgagc tattacgcac
     2041 tctttgaatg aatagctgct tctaagctaa catcctagtt gtctgtgcaa ccccacatcc
     2101 ttttccactt aacaattatt ttgggacctt agctggtggt ctgggctgtt tccctttcga
     2161 ctacggat
//
LOCUS       DASGCC010000170         2021 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.171, whole genome shotgun sequence.
ACCESSION   DASGCC010000170 DASGCC010000000
VERSION     DASGCC010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.171"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(21..785)
                     /locus_tag="U1404_001841"
     CDS             complement(21..785)
                     /locus_tag="U1404_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM5348749.1"
                     /translation="MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPI
                     IVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKELTDDDLLYQAIIENLQRSNLNP
                     IEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
                     RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSK
                     TLGTATKIIKKKNGSGEIRINFNDLDEFERIINNFK"
     gene            complement(846..2012)
                     /locus_tag="U1404_001842"
     CDS             complement(846..2012)
                     /locus_tag="U1404_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEM5348750.1"
                     /translation="MKFAILFVIGFFGGLIGALSASFFQPRVQQANSAITSVSNVQYN
                     NETSTTKAVEKVQNAVVSVINYQKSANNSLGAIFGNIESSDELAVAGEGSGVIYKKDG
                     QYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISADKVTAVAEFA
                     DSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSKDGQTISTNAIQTDTA
                     INPGNSGGPLINTQGQVIGITSSKITSSSANSSGVAVEGLGFAIPANDAVAIINQLEK
                     TGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTELTSGVVIVSTQSGLPADGKLETFDV
                     ITEIDGEAIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE"
BASE COUNT          573 a          381 c          358 g          709 t
ORIGIN      
        1 aaaataaatt gtaaacaagt ctatttaaaa ttgttgataa ttctttcgaa ttcatcgagg
       61 tcattaaagt taatccgaat ttctccgctc ccgtttttct tcttgataat ttttgtagct
      121 gttccaagag ttttactgag tgaatcttcc tgttctttta aaaattggtc gcgttgttta
      181 agcttagtgt gttttttctt atttgcagct attaattttt caagcgtacg cacacttaaa
      241 tcctttgata aaatgagttg aacccattcg gcttgctttt cttctgaaaa tgacaccaat
      301 tgtcgcgcgt gcccttgtga aatttttcct tcttctacag cttgtttagt ctgagatgat
      361 agatttagta ggcgcaataa attactgata tatggtcttg attttcccat gatttgagca
      421 acttcatcat gtgttaaccc tctactaatc aatttttgat aagaggctgc ttcttctatc
      481 ggatttaagt tagaacgctg cagattctct atgatagcct gatagagtaa atcatcatca
      541 gttagttcct ttaccactgc tggtattgta gtcagtccag ctaattgact ggctcgcaac
      601 cttctttctc cagctaataa ttcgtatccg ataatagaag attttcttac aataatcggt
      661 tgaattaagc cattttcctt aatagattga gcgagctcaa gtagctcctt ttcatcaaaa
      721 tgaattcttg gctgataggg attgggatgg atttctgaaa tatttagtgt acgtaattct
      781 tccatatatc cttattctag caaaaaaaat gagactttac aattgtgtaa agtctcattt
      841 gtcaattatt cgctaagttc ttctgtagaa tgtgtcaact taatgtcaac agtttgtttc
      901 tgattattgc ggtaataagt tacagtgatt gtatctccaa tttgatgttt gtagagagcg
      961 ctctggaggt cactcttatt ttgaatagct tctccgtcaa tctcagtaat aacatcaaaa
     1021 gtttctaatt ttccatctgc aggtagccca ctttgtgtag agacaattac tacaccggat
     1081 gttaattccg tatttgataa tccagctttt tctaattgac tagttgacaa ggtcgtcaag
     1141 ttaaccatat gaactccaag agcaggtcgg ctaacttgtc cagttttttc aagctgattg
     1201 ataatagcta cggcatcatt tgcaggaata gcaaatccca acccttctac agccacgcct
     1261 gagctatttg cagaacttga ggtaattttg ctagaggtaa tgcctatcac ttgtccttgg
     1321 gtattgatta acggtccgcc agagtttcca gggttgatag ctgtatcagt ttgaatagcg
     1381 ttagttgaga ttgtttgtcc atcttttgat tgtgaagtaa ctgtccgact taagctagaa
     1441 ataataccct gggtaactgt attggcgtag acgctaccta gaggactacc aattgcgata
     1501 gcagtttctc caactttaat tgtatcggaa tcagcaaatt cagcaacagc agtgacttta
     1561 tctgctgata tttttataac agctatatca gaatatgtat cagaaccaac aagttcaccg
     1621 ctaatttttt ctccagatgc taaaaggata tcaatctttt ctgcgttatt aataacatgc
     1681 gtatttgtca caatataggc atattgacca tcttttttgt agataacacc agatccctcc
     1741 ccagcaacgg ctagttcgtc agatgattca atatttccaa agatagcacc aagactattg
     1801 ttggctgact tttggtaatt aataacagac acaacagcat tttgtacttt ctctacagcc
     1861 tttgtagtag aagtttcatt attatattga acattgctga cactagtgat ggcagaattt
     1921 gcttgttgaa cccgtggctg gaagaaagag gctgataagg ccccgataag acccccaaaa
     1981 aatccaatta caaataaaat cgcaaatttc aaatattttt t
//
LOCUS       DASGCC010000171         1992 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.172, whole genome shotgun sequence.
ACCESSION   DASGCC010000171 DASGCC010000000
VERSION     DASGCC010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.172"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            77..409
                     /locus_tag="U1404_001843"
     CDS             77..409
                     /locus_tag="U1404_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HEM5348751.1"
                     /translation="MEIEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIAEE
                     FQVSRQAVYDNIKRTEKLLEDYEMKLHMYSDYVVRSQIFDEILNKYPEDAYLKEKIAI
                     LTSIDNRE"
     gene            422..>1992
                     /gene="ffh"
                     /locus_tag="U1404_001844"
     CDS             422..>1992
                     /gene="ffh"
                     /locus_tag="U1404_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEM5348752.1"
                     /translation="MAFESLTERLQNVFKNLRRKGKISESDIQEATKEIRLALLEADV
                     ALPVVKDFIKKVRERAIGHEVIETLNPAQQIIKIVDEELTAVLGSETSEIIKSPKIPT
                     IIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPV
                     FELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMAELREIKEFAQPNEI
                     LLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGT
                     GEKITDIETFHPDRMSSRILGMGDMLTLIEKASKEYDEKKSLELAEKMRENTFDFNDF
                     IDQLDQVQNMGPMEDLLKMIPGMAGNPALANLKVDEREIARKRAIVSSMTPAERENPD
                     LLTPSRRRRIANGSGNSFVEVNKFIKDFNQAKTMMQGVMSGDMNKMMKQMGINPNNLP
                     KNMPNMNGMDMSALEDMMGGAGMPDMSQLMGGAGMPDMSQMFGGGLKGRIGEFAMKQA
                     MKRQANKIKKAKKKR"
BASE COUNT          648 a          380 c          450 g          514 t
ORIGIN      
        1 ttaaaatccg taatctttct agtgatgacg gattttctta tttataaaat atggaatttt
       61 tgatataata aagttcatgg aaattgaaaa aaccaaccga atgaatgcct tatttgaatt
      121 ctatgcagcc ttgctaacag acaagcaaat gaactacatc gagctctatt atgccgatga
      181 ttacagtttg gctgagattg ctgaagaatt tcaagtcagc cgtcaggcgg tctatgataa
      241 cattaaacga acagaaaaat tgctggaaga ctacgagatg aagctacata tgtattctga
      301 ctatgtagtg cgtagccaga ttttcgatga aatactgaac aagtatccag aagatgctta
      361 tttgaaggaa aaaatcgcta ttctaaccag tattgataat agagaataag aggagaagta
      421 tatggctttt gaaagcttaa cagaacgttt acagaatgtt tttaaaaatc tgcgtcgtaa
      481 ggggaaaatt tctgagagtg atattcagga agcaactaag gaaattcgtc tggccttact
      541 agaagccgac gttgccttgc cagttgtaaa agactttatc aagaaggtgc gtgaacgtgc
      601 tatcggtcat gaagtcattg aaaccctgaa ccccgctcaa caaatcatca aaatcgttga
      661 tgaagaattg acggctgtat taggttctga aacttcagaa attatcaaat caccaaaaat
      721 tccaactatc attatgatgg ctggattgca gggggctggt aaaacgacct tcacaggtaa
      781 gttggctaat aaactcaagc aggaagaaaa tgcccgtcca ctcttgattg ctgccgatat
      841 ttatcgtcca gctgccattg accagttgaa gacccttggt caacaaattg atgtacctgt
      901 attcgagttg ggcaatcaag tccctgccct ggagattgta cgccaaggtt tagaacaagc
      961 caaagctaat cataatgact acgttctgat tgatacggcc ggtcgtttgc agattgacca
     1021 agcccttatg gccgaattga gagaaatcaa agagtttgct cagccaaacg aaatcctctt
     1081 ggtcgtcgat gccatgattg gtcaggaagc tgccaacgtt gcgcgtgagt tcaatgatca
     1141 actggctatt actggtgtga ttttgaccaa gattgacggt gatacacgtg gtggtgcagc
     1201 cttgtctgtc cgtcacatta ctggtcagcc aatcaaattc accggtactg gtgaaaaaat
     1261 cacagatatt gaaaccttcc acccagaccg tatgtcctcg cgtattttgg gcatgggtga
     1321 catgctgacc ttgattgaaa aagccagcaa agaatacgat gagaagaaat cactagaact
     1381 cgctgaaaaa atgcgtgaga atacctttga tttcaacgat ttcattgatc agctggacca
     1441 agttcaaaat atgggaccaa tggaagacct gctgaagatg attcctggta tggctggtaa
     1501 cccagcactt gccaacttga aagttgacga gcgtgaaatt gcaagaaaac gagctatcgt
     1561 atcttctatg acaccagccg aacgagaaaa tcctgatttg ttgacaccga gccgtcgtcg
     1621 tcgtattgct aacggttctg gaaatagctt tgtcgaagtc aataaattta tcaaggattt
     1681 caaccaagcg aaaaccatga tgcagggtgt catgtcaggc gacatgaaca aaatgatgaa
     1741 acaaatggga atcaacccaa ataatctccc taaaaacatg ccaaacatga acggtatgga
     1801 tatgtctgct ctggaagata tgatgggtgg tgcaggcatg cctgatatga gccaactgat
     1861 gggaggagct ggtatgccag atatgtccca aatgtttgga ggcggtttga aaggtagaat
     1921 cggcgagttt gctatgaaac aagccatgaa acgccaagcc aataaaatca agaaagccaa
     1981 aaagaagaga aa
//
LOCUS       DASGCC010000172         1969 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.173, whole genome shotgun sequence.
ACCESSION   DASGCC010000172 DASGCC010000000
VERSION     DASGCC010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.173"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(1..746)
                     /locus_tag="U1404_001845"
                     /pseudo
     CDS             complement(1..746)
                     /locus_tag="U1404_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            853..1806
                     /locus_tag="U1404_001846"
     CDS             853..1806
                     /locus_tag="U1404_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEM5348753.1"
                     /translation="MQDYYTPKGKHLTLSDRRNIERWLHEGCSNREVARRLDKAPQTI
                     HNEVKRGLILQQVRQSRFKKVYSADRAQMAYEENRKCSVKTVQLDKRTKEKICHYLTQ
                     KYSPEMMAKSGKVTVSVSSIYYWIHHGHLGVGKEALLYPRKAKANKKQASPNFKPAGK
                     SIEERPESINKRENIGDFEIDTVIQTRAKNECLLTLTDRKSRYQIIRLIPDKSASSVN
                     HVLRTILQEYQIHSITADNGTEFSRLSEVFDPDQIYYANPYASWERGTNENHNRLIRR
                     WLPKGSKNATKKQVTFIENWINNYPKKVLDYKTPREVLYAG"
BASE COUNT          647 a          378 c          406 g          538 t
ORIGIN      
        1 ataatttgtt ccattcgtaa ctgtagtccg gctaggcttc tagttaatgt atgttcgatg
       61 tcaaagagac gacacagttc agaaaaacgt gtttcaatag ttcgtctcat ggccattact
      121 ttccaattgt tatgttcttc agcccctgtc atgtttttac gaaatggcgt ccatagatgg
      181 taaccttctt gttctaagtc cttcttgagt tcactgctca ggtagcctaa atcacctagg
      241 ataaccgatt gcttacaccc ctctaatagc tcataaacca ccttgatgtc atgaacagag
      301 gctggcgtga caacatagtt cagaatataa cctgataagg tcaccagcat atgaaccttg
      361 aagccgtaga accaaagatg tttagaggcg ttgtagccaa tatcggctaa tcctttaaaa
      421 atgctagctc tgtgattacg aacgggttgg caaagtggca aaggaaaact atctataata
      481 gctagtttat cagatggaag catttcactc atagcttttc ggatgaattg gactagccaa
      541 atcaattgtt tagaccgacg attgaaacga cttctttcta gtaactgacc acaaggaaag
      601 aggtggccga tgctgtagaa atggcgttgt gatgttatgc ctagttctgc ttgtaacaaa
      661 agtaagacaa ggattgattc atctgaaact ttaactaagc caacatttcg ccgatattta
      721 aaggaatctg ggcaatagtt ttggtagaag tgataaaagt tctaaaatga agttagccac
      781 ttaaaagtat gaaaaaacac ctcagagaga tataattgta atcaccacaa aaacaattag
      841 aaagactatg agatgcaaga ctattataca ccaaaaggaa aacatttaac actatcagac
      901 cgtagaaata ttgaacgctg gttacatgaa gggtgttcca atcgtgaagt ggctaggcga
      961 ctagataaag ctcctcaaac cattcataat gaggtcaagc gggggctaat tctccaacaa
     1021 gtgcgtcaaa gtaggttcaa aaaggtctat tcagccgaca gagctcagat ggcctatgaa
     1081 gaaaaccgaa aatgctctgt gaaaactgtt caacttgata aacggactaa ggaaaaaatc
     1141 tgccactacc tgactcagaa atactcgcct gagatgatgg ccaaatctgg aaaggtaact
     1201 gtttctgtgt cctctatcta ttactggatt catcatgggc atctaggagt tgggaaagaa
     1261 gccttgctct atcctagaaa agcgaaagct aataagaaac aagctagtcc taactttaaa
     1321 cctgctggaa agtcaattga ggaacgaccg gagagtatca ataagcggga gaatatcggc
     1381 gattttgaga ttgacacagt tattcaaaca cgagctaaaa acgagtgcct actgacctta
     1441 accgacagaa aaagtcgtta tcaaatcatt cggcttattc ctgacaagtc ggcttcttcc
     1501 gtcaatcatg tcctgagaac aatcctgcaa gagtatcaga ttcactctat cacggctgac
     1561 aacggaacag aatttagtcg cttatctgag gtttttgacc ctgatcaaat ttactatgcc
     1621 aacccttatg cctcttggga gagagggacc aatgagaacc ataatcgttt gattcgacgt
     1681 tggttaccaa agggaagtaa aaatgcgacc aaaaaacagg tcacattcat tgaaaattgg
     1741 atcaataact atcctaagaa agtattagat tacaaaactc ccagagaggt gttatacgct
     1801 ggctaacttg gacttgaatt ttgcctttgg tagaagtgat gacaaatttg tgataattga
     1861 cgtacactcc attgcaaatg atgagattta gcggtatact gtaagtagct catttgggct
     1921 ttttattgta gtttgaaatg aactagcacc acgggtatta tcatatata
//
LOCUS       DASGCC010000173         1910 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.174, whole genome shotgun sequence.
ACCESSION   DASGCC010000173 DASGCC010000000
VERSION     DASGCC010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.174"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(59..532)
                     /locus_tag="U1404_001847"
     CDS             complement(59..532)
                     /locus_tag="U1404_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5348754.1"
                     /translation="MNKIESRHQLILSLIMEKKIHTQQELQELLEINGVSVTQSTLSR
                     DIKMLNLVKVNEDDSSHYVINPIAPTRWEKRLRLYMEDALVMLKPIQHQVVLKTLPGL
                     ANSFGSILDAMEIPQIVATVCGDDVCLIICEDVEGAQACFEHLKQFTPPFFFSKL"
     gene            complement(596..1624)
                     /gene="queA"
                     /locus_tag="U1404_001848"
     CDS             complement(596..1624)
                     /gene="queA"
                     /locus_tag="U1404_001848"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEM5348755.1"
                     /translation="MNTADFDFDLPEELIAQVPLEKRDSSKLLILDREKQSMVDSHFD
                     HIIDQLNPGDALVMNNTRVLPARLYGYKPETMGHVELLLLKNTQGNQWEVLAKPAKRL
                     KVGTTVAFGDGRLTATIVEELEHGGRIVEFSYEGIFLEVLESLGEMPLPPYIHEKLED
                     RERYQTVYAKENGSAAAPTAGLHFTQELLEKIEAKGVKLVYLTLHVGLGTFRPVSVDN
                     VDEHEMHSEFYNLSAEAAQTLNQVKDSGGRIVAVGTTSIRTLETIGNKFDGRLEADSG
                     WTNIFIKPGYTFRIVDAFSTNFHLPKSTLVMLVSAFAGREFTLDAYKHAVEERYRFFS
                     FGDAMFIQ"
BASE COUNT          585 a          361 c          422 g          542 t
ORIGIN      
        1 tgatatttat ttgaaaaatt atctttaaaa ttaagtattt gtttgtgaac acaaattttt
       61 ataatttact aaagaaaaat ggtggagtaa actgtttcaa gtgctcgaag caagcttgtg
      121 ccccctcgac atcttcacaa atgatgagac agacatcgtc accgcagaca gtcgctacaa
      181 tttgaggaat ctccatggca tccaaaatag aaccgaatga gttggccaat ccaggtaggg
      241 tcttgagcac cacttgatgt tggataggtt ttagcatgac cagagcatct tccatataga
      301 gtcgcagtcg tttttcccag cgagtaggag caatggggtt gatgacatag tgagaagaat
      361 catcttcatt gactttgaca agattgagca tcttgatgtc acgggagagg gtagattggg
      421 tgacggagac tccgttgatc tctagtaatt cttgcaattc ctgttgggta tgtattttct
      481 tctccatgat tagagacagg atcagctgat ggcggctttc aatcttgttc atagggccct
      541 ccttgagatg taaggaaaat aaaatctgaa ctcagaataa tttggtgata acagcctatt
      601 gaatgaacat tgcatcccca aaactaaaga agcggtagcg ttcttcaaca gcatgtttat
      661 aggcatctaa cgtaaattct ctacctgcaa aggcagaaac tagcataacc aaagtagatt
      721 ttggtaggtg gaaattggtt gagaaggcat caacgattcg gaaggtgtag ccaggtttga
      781 tgaagatatt tgtccaacca gaatcagctt ccaaacggcc atcaaattta ttaccgatgg
      841 tttcgagggt gcggatggat gtcgtgccga ctgcgacgat acgaccaccg ctatctttga
      901 cctgattgag ggtttgagca gcttctgctg ataggttata gaattccgag tgcatttcat
      961 gctcatcaac gttatcaaca gagactggtc ggaaggtccc aagcccaacg tgaagagtca
     1021 gatagactag tttcactcct ttagcttcga ttttttcgag taactcttgg gtgaaatgta
     1081 gtccagcagt tggagctgcg gcagaaccgt tttccttggc ataaactgtt tgatagcgtt
     1141 cgcggtcttc taatttctca tgaatgtaag gtggaagtgg catttcgcct agactttcca
     1201 agacttcaag gaagatacct tcataggaga attcaacaat tctaccaccg tgttctaatt
     1261 cttctacgat agtagcagtt aatcgtccgt caccaaaagc gactgtggta ccgaccttca
     1321 gacgttttgc tggtttggca agaacttccc actgattacc ttgggtattt ttcaaaagca
     1381 aaagctcaac atgtcccata gtttcaggct tgtagccata gagacgggca ggcagaacac
     1441 gtgtattgtt catgaccagg gcatcaccgg gattcaactg gtcgatgata tggtcaaagt
     1501 gactgtcaac catgctctgt ttttcgcggt cgaggatcaa tagtttagag ctgtcgcgct
     1561 tttcaagggg aacttgagcg ataagctctt cgggtaaatc aaaatcaaaa tctgcagtat
     1621 tcatattcac tccttagact aaaataaaat ataggtaaaa taaatcaata gggcaaatgg
     1681 caaagccacc aatagactac caatcaggta gaaaataaac tttaggacct ttgatttaga
     1741 aataaaatag ccagtaaggc agaacagaat accaataaaa aataagtaaa aaagcacatc
     1801 tgtcataaat gtattatatc atagttagac acttaagtct tgatggatgg gaagagaatt
     1861 aaaattattc gtgctgatgt aatactctat aggtataaat tcttgacaaa
//
LOCUS       DASGCC010000174         1905 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.175, whole genome shotgun sequence.
ACCESSION   DASGCC010000174 DASGCC010000000
VERSION     DASGCC010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.175"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..376)
                     /gene="mreD"
                     /locus_tag="U1404_001849"
     CDS             complement(<1..376)
                     /gene="mreD"
                     /locus_tag="U1404_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEM5348756.1"
                     /translation="MRNKMIEIFMFPILFFILLLDGQISTLVTNWSVGLFTISSHLVL
                     MLAIFYANYVSLGFSLFIFTLLGLVYDISYLNLIGIATTTLPLVLYCIYFFFQGAVSK
                     RGINILILLVAIFQFEFISYSFA"
     gene            complement(366..1202)
                     /gene="mreC"
                     /locus_tag="U1404_001850"
     CDS             complement(366..1202)
                     /gene="mreC"
                     /locus_tag="U1404_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEM5348757.1"
                     /translation="MNKFSKLVVVVSIFLLLSFSLLFVTFSKGLQVPYLNNIVRVVVT
                     PIQSVISVPTRFFSEQKDVLTDLMNAYEENKQLKEAIMSLEGMAAENTSLKEENASLR
                     SSLGVVSDFPEKQLIPGSVLVRTPSSWSEHISINIGETRGVTSNALVVANGGLVGIVS
                     SLSSDSAVVTLFTNSDEFTKLPVKISVDSKEIYGILSGYDADTNSFIINQLNSADEIA
                     VGSNVVTSDLAGATPANVQIGKVLSVKSNSNSLNREVYVEPTASFSNIYSVLVVGQTN
                     AQ"
     gene            complement(1262..1349)
                     /locus_tag="U1404_001851"
     tRNA            complement(1262..1349)
                     /locus_tag="U1404_001851"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1313..1315),aa:Ser,seq:gct)
     gene            complement(1362..1435)
                     /locus_tag="U1404_001852"
     tRNA            complement(1362..1435)
                     /locus_tag="U1404_001852"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1399..1401),aa:Ile,seq:gat)
     gene            complement(1467..1539)
                     /locus_tag="U1404_001853"
     tRNA            complement(1467..1539)
                     /locus_tag="U1404_001853"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1504..1506),aa:Phe,seq:gaa)
     gene            complement(1555..1628)
                     /locus_tag="U1404_001854"
     tRNA            complement(1555..1628)
                     /locus_tag="U1404_001854"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1592..1594),aa:Met,seq:cat)
     gene            complement(1639..1728)
                     /locus_tag="U1404_001855"
     tRNA            complement(1639..1728)
                     /locus_tag="U1404_001855"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1690..1692),aa:Ser,seq:tga)
     gene            complement(1735..1808)
                     /locus_tag="U1404_001856"
     tRNA            complement(1735..1808)
                     /locus_tag="U1404_001856"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1772..1774),aa:Ile,seq:cat)
     gene            complement(1825..1898)
                     /locus_tag="U1404_001857"
     tRNA            complement(1825..1898)
                     /locus_tag="U1404_001857"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1862..1864),aa:Met,seq:cat)
BASE COUNT          670 a          429 c          324 g          482 t
ORIGIN      
        1 gagcaaatga ataactaata aattcaaatt gaaaaatagc tactagtaaa atcaaaatat
       61 taattcctcg cttgctgaca gcaccttgaa agaagaaata gatgcaatat aaaactaaag
      121 gaagagttgt agtagcaata ccaatcagat taagataact aatatcatat accaaaccta
      181 gcaaagtaaa tatgaataat gaaaaaccaa gagatacata gttagcataa aaaatagcta
      241 acataagtac caaatgactt gaaatagtaa ataatccgac cgaccaattt gttaccaacg
      301 ttgaaatctg tccatcaagt aataaaataa agaacaagat gggaaacatg aatatttcta
      361 tcattttatt gcgcatttgt ttgacctacc actaaaaccg aataaatgtt tgaaaaacta
      421 gctgtcggct caacatatac ttctctattt aaactgttac tatttgattt aaccgataaa
      481 actttaccaa tttggacatt tgccggagtc gcaccagcca aatcactcgt tacaacattg
      541 ctacccactg caatttcatc agctgagttc aactgattaa tgataaaact atttgtatct
      601 gcatcatagc ccgataaaat accataaatt tctttagaat caacagaaat tttcacaggc
      661 aacttcgtga attcatccga attcgtaaat aaggtaacaa ccgccgaatc tgaactcaat
      721 gaactaacga tgccaactaa tccaccatta gcaaccacaa gtgcattaga tgtcacaccc
      781 ctagtctcac caatattaat tgaaatatgc tccgaccacg atgaaggagt cctcactaaa
      841 actgatcctg gaataagttg tttttcagga aaatcagata ccacacctaa actgctacga
      901 agcgatgcat tctcttcttt caagctagta ttttcagcag ccatcccttc aaggctcata
      961 atagcttcct ttaattgttt attttcctcg taagcgttca tcaaatctgt caagacatct
     1021 ttctgctcag aaaaaaatct agtaggtact gaaataaccg attgaattgg cgttacaaca
     1081 accctaacga tattatttaa atatggtacc tgtaatccct tagagaaagt cacaaacaaa
     1141 agagaaaatg acagtaataa aaagatagaa acaactacta ctaattttga aaatttattc
     1201 ataatggatc ctcactaaga tacaataaaa cgagaatatc aagcgataat ctcgttcact
     1261 acggagaata agggattcga acccttgcgc cagttacccg acctaacgat ttagcaaacc
     1321 gtcctcttca gcctcttgag taattctcca tcaatataat atgggcacga gtggaatcga
     1381 accaccgacc tcacgcttat caggcgtgcg ctctaaccat ctgagctacg cgcccaagat
     1441 aataaacttg gacaaagtta aattaatggc gcgagacgga atcgaaccgc cgacacatgg
     1501 agcttcaatc cattgctcta ccaactgagc taccgagcca aattcttaaa gaaattgcgg
     1561 gagcaggatt tgaacctacg accttcgggt tatgagcccg acgagctacc tagctgctcc
     1621 atcccgcggt agtagaaaag gaggatgtgg gattcgaacc cacgcacgct tttacacgcc
     1681 tgacggtttt caagaccgtt cccttcagcc ggacttgggt aatcctccaa tatatggacc
     1741 ttgtaggact tgaacctacg accgctcggt tatgagccga gagctctaac cagctgagct
     1801 aaaggtccag taaacaagag tatatagcgg cgaaggggat cgaacccccg acctcccggg
     1861 tatgaaccgg acgctctagc cagctgagct acaccgccaa aataa
//
LOCUS       DASGCC010000175         1901 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.176, whole genome shotgun sequence.
ACCESSION   DASGCC010000175 DASGCC010000000
VERSION     DASGCC010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.176"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            168..917
                     /locus_tag="U1404_001858"
     CDS             168..917
                     /locus_tag="U1404_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEM5348758.1"
                     /translation="MQKIDLLDGERIDQLFSTDVQIIQNREVFSYSIDSVLLSRFPKM
                     PAQKGLIVDLCSGNGAVGLFASTRTKAQIMQVELQERLADMNRRSIALNGLEEQVSVI
                     NDDLANLPQYDLRSKVDLMLCNPPYFKVDKDSNLNESEHYLLARHEIATNLDSICQVA
                     QQVLKSNGRLAMVHRPDRFLDILDKLRTYKLAPKRIQFVYPKASKEANMLLIEAIKDG
                     SVDGLHILPPLVVHEENGDYTPAIREIYYGK"
     gene            907..1179
                     /locus_tag="U1404_001859"
     CDS             907..1179
                     /locus_tag="U1404_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM5348759.1"
                     /translation="MENKAYFYVLECADGSLYTGYTTDVEKRLATHNRGKGAKYTRGR
                     LPVSLLYQEAFASKQEAMSAEALFKKRSRQSKLDYIAEMTKKPRTK"
     gene            complement(1195..1806)
                     /locus_tag="U1404_001860"
     CDS             complement(1195..1806)
                     /locus_tag="U1404_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5348760.1"
                     /translation="MVTVLIVKAHPLDAQKSYALRALEEFQTRYASLHPEDQIEVVDV
                     FEDQIPALDKSLLEAMGAAKKGESISPDQAKQLDRYNALTQQFLMADKIVVVNPLWNL
                     NVPSQLVSWVNTINVAGLTFKYGPEGSIGLVKDKKLLHIQSNGGVYAGQDPAAQYIKS
                     IFEFLGFEDIHQVFIEGQSADPSQAQAIFEEAMGKIDAILEVF"
BASE COUNT          512 a          427 c          430 g          532 t
ORIGIN      
        1 cagtcgtaat ggtccgattt ggagtgtaaa acacgaacaa atctgccaat caaccactgt
       61 gctgagatgt tgacacgaac actgagaagt gggccagggc tttttgccca gcctcttttc
      121 tttcaaaata tacagtgatt ttcattcaaa gatggtataa tatacctatg caaaaaattg
      181 atttactaga cggagagcgg atcgaccagc tcttctcgac agatgttcag attattcaaa
      241 atcgagaggt ttttagctac tcgattgaca gcgttcttct ttcgcggttt ccaaaaatgc
      301 ctgctcagaa ggggctgatt gttgaccttt gtagcggaaa tggggccgtg ggtctctttg
      361 cctccactcg caccaaggct cagattatgc aggtcgagtt gcaggaacgc ttggcggata
      421 tgaaccgccg ctccattgcc ctcaatggtt tggaggaaca ggtctcggtt atcaatgatg
      481 acttggcaaa tctgccccag tatgatctgc ggtccaaggt tgatttgatg ctctgcaatc
      541 ctccctactt caaggtagat aaagactcaa acctcaatga aagcgagcat tatctcctag
      601 ctagacacga gattgcgacc aacctagaca gcatttgtca ggtggcccaa caggtgctca
      661 agtccaatgg tcgcttggcc atggttcaca ggcccgaccg gtttttagat attttggaca
      721 agttgagaac ctacaaattg gctcccaaac gcatccagtt tgtctatccc aaggccagca
      781 aggaggccaa tatgttgctg attgaggcta tcaaggacgg ctcggtggac ggtctgcata
      841 tcctgccacc tctggttgtc catgaggaaa atggcgacta tactccggct attcgtgaga
      901 tttattatgg aaaataaggc ctacttttat gttttggaat gtgccgacgg gagtctttat
      961 actggctata cgactgatgt ggagaagcgg cttgctaccc ataatcgtgg gaaaggggcc
     1021 aagtacaccc gcggacgctt gcctgtcagc ttgctctatc aagaagcctt tgctagtaag
     1081 caggaagcca tgtctgccga ggctttgttt aagaaacgca gtcggcagag taaattagat
     1141 tatattgcag aaatgacaaa aaaacctcgt acaaaatagt acgaggcttt ttatttaaaa
     1201 tacttccaaa attgcatcaa ttttccccat agcttcttca aaaatagcct gagcctggct
     1261 tggatcggca gattgccctt cgataaagac ttgatgaata tcttcaaagc ctaaaaattc
     1321 aaagatagac ttgatgtact gggctgctgg atcctgacct gcataaacac caccattgga
     1381 ctggatgtgc aggagctttt tgtccttgac caaaccgata gagccttctg gaccatactt
     1441 aaaggtcagg cctgctacat tgatggtatt gacccaagat accaattgac ttggcacatt
     1501 gagattccag agaggattga cgacaactat cttatccgcc ataagaaatt gctgggtcaa
     1561 ggcattgtaa cggtccaatt gctttgcttg atcaggactg atactctcgc cttttttagc
     1621 agctcccata gcctctaaca aagatttgtc caaggctgga atctggtctt caaaaacatc
     1681 cactacttct atctgatctt ctgggtgcaa actggcgtaa cgagtttgaa actcttccaa
     1741 agcccgcaag gcgtaggact tttgtgcgtc gagggggtgg gcctttacaa ttaatacagt
     1801 taccattgtt catctccttt gttactaatt attgataatt atattctact ctttttgatt
     1861 tgaaattcaa atcatttgct cgaagcaaaa ggctggtctc c
//
LOCUS       DASGCC010000176         1700 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.177, whole genome shotgun sequence.
ACCESSION   DASGCC010000176 DASGCC010000000
VERSION     DASGCC010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.177"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(63..1550)
                     /locus_tag="U1404_001861"
     CDS             complement(63..1550)
                     /locus_tag="U1404_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1846 domain-containing protein"
                     /protein_id="HEM5348761.1"
                     /translation="MKKIAFDSTKYLNLQRDHILERIAQFEGKLYMEFGGKMLEDFHA
                     ARVLPGYEPDNKIKLLQELKDQVEIVIAINASNIEHSKARGDLGISYDQEVFRLIDTF
                     NDIDIYVGSVVITQYRNQPAADAFRKQLEKHGIKSYLHYPIKGYPSDIDHIISPEGMG
                     KNDYIETSRNLVVVTAPGPGSGKLATCISQLYHDQLHGVTSGYAKFETFPVWNLPLHH
                     PVNLAYEAATADLDDLNMIDPFHLQTYGKTAVNYNRDIEVFPVLNRTFERILNKSPYA
                     SPTDMGVNMVGYSIVDEEAAIEASKQEIIRRYYQTLVDFKAERVSEQAVKKIELLMNE
                     VGVTPADRKVVIAAREKAELTTSPALAIQLPTGEIVTGKTSDLLKPTATVLLNAIKQI
                     ANIDDETLLIEPNYIRPIQELKADYLDKTNTRLDASEILNALAITAQDSPLAARAMKE
                     LGQLNGSEAHSTVILSDEDKSVLRKLGINLTFDPIYQHNKFYQKN"
BASE COUNT          432 a          338 c          419 g          511 t
ORIGIN      
        1 attgaatcct tgctttttta ctgttcacaa aaagacttgt cggagcaagt ctttttgtgt
       61 gcttagtttt tctgataaaa cttattgtgt tggtagatag ggtcaaaggt aagattgatg
      121 cctaatttac gaaggacact cttgtcttca tcggatagga taacagtcga gtgggcttcg
      181 ctaccattta attggcctaa ttctttcatg gcacgtgcag caagagggct atcttgtgca
      241 gtgatggcaa gggcgttaag aatttcgctt gcatcgagtc gtgtatttgt cttatccaga
      301 taatctgcct tcaattcttg aattggacgg atgtagtttg gttcgatgag aagtgtttca
      361 tcatcgatgt tagcaatttg cttgatggcg ttgagaagga cagttgcagt tggcttgagg
      421 aggtcggatg tcttacctgt tacaatctct ccagttggca actgaatagc aagggcaggg
      481 ctagttgtta gctctgcttt ttcgcgcgca gcgataacaa ccttacgatc tgctggcgtc
      541 acaccgactt cattcatgag gagttcaatc ttcttaactg cttgctcgct cacccgctct
      601 gccttgaaat caaccaaggt ctggtagtag cggcggatga tttcttgctt ggatgcttca
      661 atcgcagcct cttcgtccac gatggaatag cccaccatgt taacgcccat gtctgtcggt
      721 gaggcgtatg gtgatttgtt caaaatacgt tcaaaggtac ggttgaggac agggaagacc
      781 tcgatatcac ggttgtagtt gaccgcagtt ttgccgtaag tttgcaggtg gaaggggtcg
      841 atcatgttga ggtcgtccag gtcagcagtt gctgcttcat aggccaagtt aacgggatgg
      901 tggagtggta agttccacac tgggaaggtt tcaaacttag catagcctga tgttactcca
      961 tgcaattggt cgtggtaaag ttgggagata caggtcgcca atttacctga accaggtcca
     1021 ggtgcggtga caacgacgag attgcgacta gtttcaatgt agtcattttt gcccatacct
     1081 tctggtgaaa tgatgtggtc gatatcagaa ggatagccct tgattgggta gtggagatag
     1141 gacttgatgc cgtgtttttc caactgcttg cggaaggcgt ctgcggctgg ttgattgcgg
     1201 tactgggtaa tgaccacaga accaacataa atatcaatat cattgaaggt gtcaatcaag
     1261 cggaagactt cttggtcata agaaataccc aagtcaccac gtgccttaga atgttcgatg
     1321 ttgcttgcat tgatggcgat gacgatttct acttggtctt ttaactcttg gaggagtttg
     1381 attttgttat ctggttcata gccaggtaaa acacgggctg cgtggaaatc ttccagcatt
     1441 tttccgccaa attccatata gagcttgcct tcaaactgag caattcgttc taaaatatgg
     1501 tcacgttgca aattcaagta tttagttgaa tcaaatgcga ttttcttcat caaataagtc
     1561 ctccaaatgt gtattaatct ctgggaaaaa caaaaatagc tccctaaaac tagggagcct
     1621 tttctccgac ctctcaaaag aggtgcccga acaatactat aacaaaccgt gctaatcttg
     1681 tcaagaaaaa gtcagacaga
//
LOCUS       DASGCC010000177         1652 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.178, whole genome shotgun sequence.
ACCESSION   DASGCC010000177 DASGCC010000000
VERSION     DASGCC010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.178"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..478
                     /locus_tag="U1404_001862"
     CDS             <1..478
                     /locus_tag="U1404_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM5348762.1"
                     /translation="KMLATCILFNFVGAVLVCYLVSLTLPYQHVDAHSYLFEATVAKL
                     SKTPLTQFIEGIFANIVVNIGVFTFLRIKDDAGRLISVIFIIFIFAFLGYEHVIANFS
                     LFSLAFFSNGGPVEGMTLLSVLSNFLFSGLGNYVGGGLFIGLLYSWLNNQSKLYVD"
     gene            complement(512..1207)
                     /locus_tag="U1404_001863"
     CDS             complement(512..1207)
                     /locus_tag="U1404_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HEM5348763.1"
                     /translation="MTELFSNPIFGIMLSIAAYLIGMLIYRRFPHPITTPLLVATGLI
                     IVFLKMTGISYKEYYAGGSYLNMLIVPSTVALGIPLYRSFHLMKHHIRSILLGIFVAC
                     IVNTVFTALIAKWFGMDFFLAISLFPKSVTTAMAVGITDKMQGIATVTLVVVVATGIL
                     TSVLGPVFLKLLKIEDPVAVGLALGGTGHAIGTGTAIKYGHTQGAMAGLAIGITGIMY
                     VVISPIVAQIILQ"
     gene            complement(1200..1580)
                     /locus_tag="U1404_001864"
     CDS             complement(1200..1580)
                     /locus_tag="U1404_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HEM5348764.1"
                     /translation="MKLYVQFMIILVFSFLGEAISTIFHLPIPGSIIGLILLFLALKF
                     KLIRLRHIHTVGNFLLANMTILFLPAAVGIMERFDAIKDYLLPIIVVILGAIFLNILV
                     IGFVVQFVKQKFEGDYIDTEGIHD"
BASE COUNT          537 a          339 c          284 g          492 t
ORIGIN      
        1 caagatgttg gcaacctgta tccttttcaa ctttgtcggt gctgtccttg tttgttactt
       61 ggtctcactg actctgcctt atcagcacgt tgatgctcac agctacctat ttgaagcaac
      121 ggtggccaag ctttcaaaga cacctttgac tcaatttatt gaaggaattt ttgctaatat
      181 tgtcgtgaat atcggcgtat ttaccttctt acgcatcaaa gatgacgctg ggcgtctcat
      241 ttccgttatt ttcatcatct ttatctttgc tttcttggga tatgagcacg tcatcgcaaa
      301 cttctctctt ttctcattag ccttcttctc aaatggtgga ccagttgagg gaatgactct
      361 attaagtgta ctaagcaatt tcctcttttc tggattagga aactacgtgg gtggcggtct
      421 ctttatcgga cttctttata gttggttgaa taatcaatcc aaactttatg tagactaaaa
      481 aaactacggt tggaattcca atcgtagttt tttattgtaa gataatctgc gcaactattg
      541 gactaatcac cacatacatg atgcctgtaa tcccaatagc caagccagcc atcgctcctt
      601 gcgtatgtcc atattttatc gctgtacccg ttccaatggc atgtcctgtt cctcccaaag
      661 caagaccaac agctaccggg tcttcaattt ttagtagctt taaaaagact ggaccaagaa
      721 cacttgtcag aattcctgtt gcaacaacga ctacaagagt aacagttgct attccttgca
      781 ttttatcagt aataccaaca gccatagcag tggtgactga ttttggaaaa agagagattg
      841 ctagaaaaaa atccatccca aaccattttg caattagggc agtaaagaca gtattgacaa
      901 tacaggcaac aaaaattcct aaaagaatac ttcgaatgtg atgtttcatt agatggaaag
      961 aacgatacaa aggaataccc agagctactg ttgaaggcac aataagcata tttaggtagg
     1021 accctcctgc ataatattcc ttataggaaa tacctgtcat ttttaaaaag acaataatca
     1081 atcctgtagc taccaacagt ggggttgtga ttggatgagg aaatctccga taaatcagca
     1141 ttccaattaa atatgctgca attgataaca taataccaaa aataggattt gaaaaaagtt
     1201 cagtcatgaa ttccctccgt atcaatgtag tcaccttcaa acttttgctt cacaaattga
     1261 acaacaaaac caattactaa gatatttaaa aaaatggcgc ctaaaatgac gacgataata
     1321 ggaagtaaat aatctttaat tgcatcaaat ctctccataa tgcccactgc tgcaggcaaa
     1381 aaaagaatgg tcatgttagc cagcaaaaaa ttcccaaccg tatgaatgtg gcgaagacga
     1441 atcaatttga actttagggc taaaaatagg aggatcaagc caatgatact tcccggaata
     1501 ggaagatgaa aaatagtcga aatagcttcc cctaaaaatg aaaataccag aataatcata
     1561 aactgaacat atagtttcat ctttacacca ccttaaatac tactaatcca tctgaggtca
     1621 ttctctttta gtccagaaat tcccttaatg tt
//
LOCUS       DASGCC010000178         1592 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.179, whole genome shotgun sequence.
ACCESSION   DASGCC010000178 DASGCC010000000
VERSION     DASGCC010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.179"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..720)
                     /locus_tag="U1404_001865"
     CDS             complement(<1..720)
                     /locus_tag="U1404_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3307 domain-containing protein"
                     /protein_id="HEM5348765.1"
                     /translation="MSFSVISSYLIQHPVLTALLIAHFLSDFTFQSQALADAKKLHLK
                     ALFMHLFIVSLPLLILALLTPVQNGDLFFQVWLSHLAIDYVKYFLNKHHWIKDSWEAG
                     AFLADQLLHVISIIILYHTIGVNVASHSLWIEPNYLLLQILFILLISKPVNILFKLYF
                     SKYQVAEGEEEQTVTGAGALIGQLECLIMGIFLLLGQYTAIGLVFTAKSIARYDKISK
                     SQAFAEYYLIGSLFSIISVLVL"
     gene            complement(724..1392)
                     /locus_tag="U1404_001866"
     CDS             complement(724..1392)
                     /locus_tag="U1404_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SatD family protein"
                     /protein_id="HEM5348766.1"
                     /translation="MNYIAIIGDIVNSKQTSNRSSIQERLKQQLNRINHSFAQDFASP
                     FTITKGDEFQALCKPNPYIFLIIDQIQLAFRDEVEIRFGIGLGEILTAIDPKLSIGAD
                     GPAYWEARKAIDFIHDNHDYGTSKIAFSSEYKQIDRVINPLLTSSDFIKAAWNRSQTD
                     LFETLISKKIYQEDFTQKPIAEKMKLSQSAFTKRLKSSGIKLYLRNRQTAMNLILQLS
                     QKEG"
BASE COUNT          493 a          271 c          337 g          491 t
ORIGIN      
        1 caatactagg acactaatga tactaaatag cgaaccaatt aaatagtatt cagcaaaggc
       61 ttggcttttg gatattttat catagcgtgc gatggatttt gctgtaaata ccagcccgat
      121 agctgtgtat tgccctagaa gtagaaaaat ccccataatc aagcattcta attggccaat
      181 caaggctcct gcacctgtca cagtctgctc ttcttctcct tccgctacct gatatttgct
      241 aaagtagagt ttgaaaagaa tattgacggg cttgctgatc agaaggataa aaaggatttg
      301 caggaggaga taatttggtt caatccagag tgagtgtgaa gcaacattga caccgatagt
      361 gtgataaaga atgatgatag agatgacatg tagcaattga tcagctagga atgctccagc
      421 ttcccaggag tcctttatcc aatggtgttt gttgagaaaa tatttgacat agtcaatcgc
      481 aagatggctc agccaaactt gaaaaaataa atctccgttt tgaacggggg taagtaaggc
      541 tagaataaga agagggagag aaacaatgaa aaggtgcatg aaaagagctt tcaaatgcag
      601 ttttttagca tccgccagtg cttgactttg gaaggtaaaa tcacttaaaa agtgggcaat
      661 aagcaaggcg gttaaaactg gatgttgaat aagatagcta gaaataactg aaaatgacat
      721 gctttatcct tctttctgac tgagctggag aatcaaattc atggcagttt gacgattacg
      781 caggtagagt ttgattccgc tggatttcaa acgtttggta aaggcgcttt gactgagttt
      841 cattttctca gcaattggct tttgtgtgaa atcttcttga tagatttttt tggagattaa
      901 ggtctcaaac agatccgttt gcgaacgatt ccaggcagct ttgatgaaat cgctagaagt
      961 tagcaagggg ttaatcacac gatcgatttg cttgtattca gatgaaaatg caattttgct
     1021 ggtgccatag tcatggttgt catgaatgaa gtcaatagcc ttgcgtgctt cccaataagc
     1081 tggaccatct gctccaatac ttagcttggg atcgatagct gttagaatct cacccaaacc
     1141 aattccaaat cgaatctcca cctcatcacg gaaggctagt tggatttggt caattattaa
     1201 aaaaatataa gggttaggct tgcataaggc ttgaaattca tctccctttg taatggtaaa
     1261 tggtgatgcg aagtcctgag cgaaggaatg attgattcta ttcagctgct gttttagccg
     1321 ctcttgaata ctagagcggt tggaagtttg ttttgaattg acaatatctc ctattattgc
     1381 gatataattc ataacttgtc ctctgattcc tattatattt ccattataac ggacaatata
     1441 aagattgtcc actaaaaagg acatttttga atatttccgt tataacggaa aatgttgggg
     1501 ttcaaaaatc atttttcctg ctttgctact tctattttac attgctgtat cttacttctt
     1561 cgaataaaaa gtaaaaaaga agagattatt tt
//
LOCUS       DASGCC010000179         1575 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.180, whole genome shotgun sequence.
ACCESSION   DASGCC010000179 DASGCC010000000
VERSION     DASGCC010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.180"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..1048
                     /locus_tag="U1404_001867"
     CDS             <1..1048
                     /locus_tag="U1404_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM5348767.1"
                     /translation="KLTVNKKDHKYRTGTYTVHLYYKDSNGGLTGAGGTTTHLSEAKP
                     TGTITIENRNDAQGTFDVRVTNVSSPKDIASVLLPTWSQSDDIRWYEATRQSDGSYKL
                     TVNKKDHKYRTGTYTVHLYYKDSNGGLTGAGGTTTHLSNPSAQRSYTVYIDPGHGGRD
                     SGASYGGVHEKNLALSVSNKLRENLLQYGINVLMTRTGDYDVDFKTERSRMTNASNAD
                     LFISIHFNATGAGVSNATGIETYWYQYNPEYQPKINKEMHNNPTRLAESEILANKVQE
                     SLIKETGAVNRGVRRETFAVLRETAIPAILVELGFMDNPSELQVIKQDSYHTRLAKAL
                     AQGVMNWYGAVEGK"
     gene            1126..1554
                     /locus_tag="U1404_001868"
     CDS             1126..1554
                     /locus_tag="U1404_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM5348768.1"
                     /translation="MEQSSKANSILSSVMLSQAILESAWGTSYLATHGNNLFGIKADA
                     AWTGATIEIITNEYRDGEKKQEKHLFRKYNSWNESVADYAKFFTSTPWRIKNYQSFRE
                     ATDYQQAILALRQSGYATDPKYGEKLRSIIENYKLYLLDN"
BASE COUNT          521 a          277 c          341 g          436 t
ORIGIN      
        1 taagttaact gttaataaga aggaccataa gtatcgtaca ggtacctaca cggttcactt
       61 atattataag gattcaaatg gtggtttgac aggtgcaggt ggaacaacaa ctcatttatc
      121 agaagcgaag ccaacaggta caatcacaat tgaaaatcgt aatgatgccc aaggtacctt
      181 tgatgttcgt gttactaatg tttcatcacc gaaagatata gcaagtgttc tcttacctac
      241 ctggtcccag tcagacgata tacgttggta tgaagctact cgtcagtcag atggtagtta
      301 taagttaact gttaataaga aggaccataa gtaccgtaca ggtacctaca cagttcattt
      361 atattataag gattcaaatg gtggtttgac aggtgcaggt ggaacaacaa ctcatttatc
      421 aaatccgtcg gcacagcgat cctacacagt ctatattgac ccagggcacg gagggcgaga
      481 ctcgggtgct tcttacggtg gcgtacatga aaaaaatctt gcattgtctg tttcaaataa
      541 gttgcgtgaa aatctcttgc aatatggaat caatgttttg atgacccgta caggtgatta
      601 tgatgtagac ttcaaaacag agaggtcacg aatgacgaat gcaagcaacg cagacttatt
      661 tattagtatc cattttaatg cgacgggtgc aggagtttcg aatgcgactg gtatcgaaac
      721 atactggtat caatataatc cagaatacca acctaaaatt aataaagaaa tgcataataa
      781 ccctactcgt ttagctgaaa gtgagatttt agccaacaag gtccaggaga gtttaattaa
      841 agaaacaggt gcagttaacc gtggtgtaag aagagaaact tttgcagtcc ttcgcgagac
      901 agcaattcct gccattctag tggagctagg atttatggat aatccttcgg agttgcaagt
      961 tatcaaacaa gattcttacc acactcgcct tgcgaaagca ttggcacaag gtgtaatgaa
     1021 ttggtatggt gctgttgagg gaaagtagaa attgcaggta caggtattga aacaggaaaa
     1081 ctttctaatg atcaaaaaag tttcatagcc aatctagtac ctgcaattga acaaagttca
     1141 aaagctaatt ctatcctttc gagcgtcatg ttatctcaag ccatcctcga aagtgcatgg
     1201 ggaacgtcat acttggcgac tcatgggaat aatctttttg gcatcaaagc ggatgctgcg
     1261 tggacaggtg ctacaattga aatcattacc aatgaatacc gtgatggtga gaagaagcaa
     1321 gaaaagcact tgtttagaaa atataattca tggaatgaaa gtgtagcaga ctatgctaag
     1381 ttctttacct ctactccgtg gagaataaaa aattaccaga gtttcagaga ggcaactgat
     1441 tatcaacaag cgattcttgc gctaagacaa tcaggatatg ctactgatcc gaaatatggt
     1501 gaaaaattac gatcaattat cgagaattac aagctttatc ttttagataa ttaagttttt
     1561 tgggtgattg atgat
//
LOCUS       DASGCC010000180         1532 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.181, whole genome shotgun sequence.
ACCESSION   DASGCC010000180 DASGCC010000000
VERSION     DASGCC010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.181"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(124..369)
                     /locus_tag="U1404_001869"
     CDS             complement(124..369)
                     /locus_tag="U1404_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348769.1"
                     /translation="MKIYKFMFNITYPALILCLYIIFRMKGTMSPWFDTLFLGGGFLV
                     IPLLLILLDYLSVDNDKRGTDNEAANQTTTDVEKSEA"
     gene            complement(425..736)
                     /locus_tag="U1404_001870"
     CDS             complement(425..736)
                     /locus_tag="U1404_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348770.1"
                     /translation="MITITTKARTVLQTLNTPELRDKASEKARNHGLLSGVTGDSLAL
                     AELLKNSEDIDTDTLQEFYAQGLIGFYDYASTHYYVKNPKVSMLDKFLNGDKIYWNSY
                     Q"
     gene            complement(875..1360)
                     /locus_tag="U1404_001871"
     CDS             complement(875..1360)
                     /locus_tag="U1404_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348771.1"
                     /translation="MKLFFGIFLVFLLDKFRKNDKIWVDDYIKELVIMRLQLRLSQDA
                     KIILEKEKLKRLENGVIATYGDIIEEICKNFRERLNEIDWLFVKNQPLYENVISSYTS
                     LSPSALTLSDETVFVLDELTAILNSILNMKRTVYRSFTVRIILKAYALEQKEISISYI
                     D"
BASE COUNT          494 a          282 c          227 g          529 t
ORIGIN      
        1 ctaagaaaat tttctcgaaa tgaaagaata gtagtcaata tcaatattgc aaaaataaaa
       61 tagaaagact tagaaacaat actgctataa aaaacaggta tacatagcgt aggtttaact
      121 gttttaagcc tctgatttct ccacatctgt agttgtttga ttagctgctt cattatctgt
      181 ccctctttta tcattgtcaa ctgatagata atctaataat atcaatagga gtggtatgac
      241 taaaaatcct ccgcctaaaa acaaagtatc aaaccacggt gacatagtcc ctttcatcct
      301 gaatataata tacaagcaaa gaattagagc aggataagtg atgttgaaca taaacttata
      361 aattttcata ataataattt cctttcataa aaccaaaggg ggaggggtta gctcccccta
      421 aacattattg gtagctattc cagtaaatct tgtcaccgtt aaggaactta tctagcattg
      481 atactttagg gttcttcaca tagtaatgag tactggcata atcataaaat ccgattagac
      541 cttgtgcgta aaactcttgt aaagtatctg tatcaatatc ttcgctattc ttaagaagtt
      601 cagcaagcgc taatgaatcc ccagttactc cagatagcag accatggttt ctagcttttt
      661 cagaagcctt gtctcttaat tctggagtat tgagcgtctg caatacagtc cgagctttag
      721 ttgtgattgt tatcattttg attctccttt tttctctgta caaggtggta tttatccacg
      781 gttagggacg acttattatt tcataggtga tgctcttact cccatttttc ctccttttat
      841 atattcgtct acccaaaact ataaaatata aatattagtc aatataacta atacttattt
      901 ctttttgttc taaagcatat gcttttagaa ttatccttac agtaaatgaa cggtatactg
      961 ttctcttcat atttagtatc gaatttagaa tcgctgtcaa ctcatctaaa acaaataccg
     1021 tttcatcaga taatgtcaat gcagaaggcg atagagaggt ataagaagaa attacatttt
     1081 catataaagg ttgatttttt acaaatagcc aatctatttc gtttaatctc tctctaaaat
     1141 ttttgcaaat ttcttctatg atatctccat aagtagctat tacaccattt tctagtcgct
     1201 taagcttttc tttctctaga attattttag catcttgaga taatctcaat tgcaatctca
     1261 taataaccag ctcctttata taatcgtcta cccaaatttt atcatttttc ctgaatttgt
     1321 caagcaaaaa taccaaaaaa ataccaaaaa atagcttcat ataggtccat tttgttgttt
     1381 gacaaaggaa tgaactctca aaatgcttat ttaataggct tttgtggtta gaagctcttc
     1441 gctatcaaac tcaaaatcca gtgtccgcaa ggacgtgccg gttcgacccc ggccgccggt
     1501 atagtttaaa agacaaggtt tctaagcctt gt
//
LOCUS       DASGCC010000181         1511 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.182, whole genome shotgun sequence.
ACCESSION   DASGCC010000181 DASGCC010000000
VERSION     DASGCC010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.182"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..1319)
                     /locus_tag="U1404_001872"
     CDS             complement(<1..1319)
                     /locus_tag="U1404_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM5348772.1"
                     /translation="MNTKKWRTSLLIPGIVLFGTVALVNNVSAQEVKNTIISAKQPDG
                     RQATSKAVNVKIPAVVRLFGRELLENEFKFELREANSEKLIDTTQNTKEGQVSFKNLS
                     FNKPGEYWYTISEVKNELSGVEFDSKYIVAKITVEDRNNGQLQAMIEFIADDNVFNNF
                     YTPAPAAASLSIKKVLEGRTLNTGEFEFVLKNEKGDEIEKVSNQADGSVNFSALTFTK
                     EGTYTYTVSEVDGGLGDIIYDKSDIKATVTVKDNNHGQLVSTVTYENSDQIFENILNP
                     GKLITPTTDSVITDNEVSKEAMTDKEKGNIEPPKEQIATEEKDNIEASEKQMPSIVND
                     MVVTPEKQMTNKENDNVETSEKQMPSVMNENAVTPEKQMTNKENDNIETSEKQMPSVM
                     NENAVTPEKQMTNKEKDNIETSEKQMPSVVNENAVTPEKQMTNKEND"
BASE COUNT          374 a          300 c          237 g          600 t
ORIGIN      
        1 ttatcgttct ctttattagt catttgcttt tcaggtgtta cggcattttc gttcacaaca
       61 ctcggcattt gtttttcaga ggtttcaata ttatccttct ctttattagt catttgcttt
      121 tcaggtgtta cggcattttc gttcataaca ctcggcatct gtttttcaga ggtttcaata
      181 ttatcgttct ctttattagt catttgcttt tcaggtgtta cggcattttc gttcataaca
      241 ctcggcatct gtttttcaga ggtttcaaca ttatcgttct ctttattagt catttgcttt
      301 tcaggtgtta cgaccatgtc gttcacaatg cttggcatct gtttttcaga ggcttcaata
      361 ttatccttct cttcagtagc tatttgctct ttagggggtt cgatatttcc cttctcttta
      421 tcggtcattg cttccttaga gacttcatta tcagtaataa cgctatccgt ggttggcgtt
      481 attaacttcc caggattcaa aatattctcg aagatttgat cgctattttc ataagtcact
      541 gttgagacta gttgtccgtg attgttatct ttcacagtga cagtggcctt aatatctgat
      601 ttgtcataga taatatcgcc aagtccacca tcaacttctg aaacagtgta ggtataggtt
      661 ccctcttttg taaatgttag ggcactaaag tttacagaac catctgcttg attgcttacc
      721 ttttcgattt catcgccttt ttcatttttt aaaacaaatt cgaattcacc ggtgtttaag
      781 gtacgtccct cgaggacttt tttaatcgaa agactagcag cagctggagc aggtgtatag
      841 aaattgttaa agacattgtc atcagcaata aattcaatca ttgcctgtaa ttgtccgttg
      901 tttcgatctt ctacagttat ttttgctaca atatatttcg aatcaaactc aacaccacta
      961 agctcatttt ttacttctga aattgtatac caatattcgc cgggcttatt gaatgataga
     1021 tttttaaaac taacttgacc ctcttttgta ttttgagttg tatcaataag tttctcacta
     1081 ttcgcttctc taagctcaaa tttaaattca ttttctagaa gctcacgacc aaatagtcgt
     1141 actactgctg gtattttgac attaaccgcc tttgaagtag cctgtctccc atcaggttgt
     1201 tttgcgctga tgatggtatt ttttacttct tgtgccgata cattattcac tagagcaaca
     1261 gttccaaata atactattcc tggtattagg agcgatgttc tccatttctt agtattcatt
     1321 atcctttttc ctttctcaaa gcatgattta tgtagctaat ctgtgtcgtt ataacatgca
     1381 aattttacat ctaaagtcct caataaattt tgaacgctta gtgccagaat gtgcaccatt
     1441 cataaattat aacatcttct aaaaaacatt caagctgtcc ttctgctttt aaaatctgtt
     1501 ttatatgttt t
//
LOCUS       DASGCC010000182         1500 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.183, whole genome shotgun sequence.
ACCESSION   DASGCC010000182 DASGCC010000000
VERSION     DASGCC010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.183"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            76..1323
                     /locus_tag="U1404_001873"
     CDS             76..1323
                     /locus_tag="U1404_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002992300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEM5348773.1"
                     /translation="MQKNIAVAGTGYVGLSIAVLLAQHHQVTAVDIIQEKVDLINSKK
                     SPIQDDYIEKYLAEKDLNLVATLDAEKAYKDAEIVVIAAPTNYDSAKNYFDTSHVEAV
                     IQMVLSVNPQALMVIKSTIPVGFTQSMREKFGTENIIFSPEFLRESKALYDNLYPSRI
                     IVSYENNSPQTVIEGAKLFAKLLQQGALKENVEVLHMGATEAEAVKLFANTYLALRVS
                     YFNELDTYAELKGLDTESIIRGVGLDPRIGDHYNNPSFGYGGYCLPKDTKQLLANYND
                     IPQNMMTAIVESNRTRKDFIADQILKIAGYYDYSSHDQYSQSGEKEVIIGVYRLTMKS
                     NSDNFRQSSIQGVMKRLKAKGAKVIIFEPTLENGSTFFGSKVINNLNQFKSKSHAIVA
                     NRYDSVLDDVLDKVYTRDIFRRD"
BASE COUNT          481 a          232 c          299 g          488 t
ORIGIN      
        1 atgcgttata ttaaataatc taaaatgata ctggtaaagg aacttattag taaaatacaa
       61 tatggaggtt ttaagatgca aaaaaatatc gccgtcgcag gaactggcta tgtcggtcta
      121 tctatcgctg ttttattggc gcagcatcat caggttacag ctgtggatat tatccaagaa
      181 aaagttgact taatcaattc taagaagtct ccgattcagg atgattatat tgaaaaatat
      241 ctagctgaaa aagacttaaa tctagttgca acgttggatg cagaaaaagc ctacaaagat
      301 gcagaaattg ttgtaatcgc tgctccaact aactatgata gtgctaagaa ctactttgat
      361 acaagtcatg tcgaagcagt tatacaaatg gtattatcgg tcaaccctca agctttaatg
      421 gttatcaaat caacgattcc tgttggtttt acccaatcta tgcgtgaaaa atttggtacg
      481 gaaaatatta tttttagccc agaattttta cgggaatcca aagcacttta tgacaatctt
      541 tatccctcgc gtatcattgt atcttatgag aataattcac cacaaacagt tattgagggg
      601 gcgaagcttt ttgcaaaact tttacaacaa ggtgctctaa aagaaaatgt cgaagtatta
      661 cacatgggtg ctacagaagc agaagcagtc aagctgtttg ctaatactta tttagctttg
      721 cgtgtttctt acttcaatga attggatact tatgcggagc taaaaggatt agatacagaa
      781 tcgattattc gaggagttgg tttggatcct cgtatcggtg atcattataa taatccctct
      841 ttcggatatg ggggttattg cttgccaaaa gatacaaagc agttattggc taattacaat
      901 gatattccgc agaacatgat gacagctatt gtagagtcaa ataggactcg taaggatttt
      961 attgctgatc aaattttgaa gatagctggt tattatgatt attcgtcaca tgatcaatat
     1021 tctcaatcgg gagaaaaaga agtgatcatc ggtgtgtatc gcttgacaat gaagagtaat
     1081 tctgataatt tccgtcaaag ttctattcag ggagttatga aacgtctaaa agccaaaggg
     1141 gcaaaagtga ttatttttga accgacttta gagaatggtt ccaccttctt tggttcaaaa
     1201 gtgattaata atttgaatca gtttaaatct aaaagtcacg caattgttgc aaatagatac
     1261 gactctgtct tggatgatgt attagataaa gtgtatacgc gtgatatttt tagaagagac
     1321 tagtcttcta aagctacatt tttaattgtg tgtttagatt tctaggggag aaggctcgtt
     1381 gctcttctct ctcttttttg gctctttgtc aactgtagtg ggtagataaa aagctaacac
     1441 ctagagagga cgaaattcgt tctctcattt ttgatgttta aagcaatata tatcttggtt
//
LOCUS       DASGCC010000183         1469 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.184, whole genome shotgun sequence.
ACCESSION   DASGCC010000183 DASGCC010000000
VERSION     DASGCC010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.184"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..1429
                     /locus_tag="U1404_001874"
     CDS             <1..1429
                     /locus_tag="U1404_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5348774.1"
                     /translation="FFFIPKLYLPKLLPSRTFYSSYDFKWPKRFSRILLGYITLITIV
                     PMINKTVVSNANISLNYWRMYVTYGQFGLPLSLASFYEDSKITKPEGYSVPKLNEVLE
                     KYPPETEKQTIRPNIIFIQNESQSDFSNLQGLNMEPDPLSNQHALTDNTIHGTLNVSV
                     FGGGTANTEYEVLTSNPISLLSSNLFPYQQIITQERPSFATYLKNKNYDTVALHPQSG
                     NNYNRNAVYPLLGFNKSYFLDSEPAISSLAPLTIDRGWPSDQFLFNGIKELYTQKGDQ
                     PLFSFVVTMQGHGGYPSTEEIYPREVSINGSTSEYLAETEFLTSMKRTDEAFADLITF
                     FSTYKEPTVIVMYGDHQPSLTQEFYAQFMDENNPAAKYSTPLVIWSNFDIRERESTTI
                     SPNYLVPYLMDILSESDYALPRSPYQQFLSDMQIEAPIITSWGNIDNNGQQIEDLSTL
                     PLYQTYLQLEYNSAIDKQPLTDLYE"
BASE COUNT          489 a          313 c          225 g          442 t
ORIGIN      
        1 ctttttcttt atccctaaat tatatttacc aaaacttcta ccttctagaa cgttttattc
       61 tagttatgat ttcaaatggc cgaaacgttt cagcagaatt ttattgggct atataacttt
      121 aataacaatc gttccaatga ttaataaaac tgtcgtctct aatgcaaata tatcattaaa
      181 ctactggaga atgtacgtca cctatggtca atttgggcta ccactctcac tcgcctcttt
      241 ctatgaagat agtaaaataa ctaagcctga aggatattca gttcccaaac ttaatgaagt
      301 tcttgagaag taccctcctg aaacagaaaa acaaacaatc agacctaata ttatctttat
      361 acagaatgaa tcacagagtg atttttcaaa cttacagggc ttaaatatgg agcctgatcc
      421 gctatcaaac caacatgcat taacagacaa tactattcat ggcaccctca atgtctcagt
      481 ctttggcggt ggtactgcaa ataccgagta tgaagtgctg acaagtaacc caatcagttt
      541 attatcttct aatttattcc catatcagca gattatcaca caagaacgtc caagtttcgc
      601 aacttatcta aaaaataaaa attacgacac tgtagctcta catcctcaat ccggaaataa
      661 ttacaaccgc aatgcagtgt atcctctact ggggtttaat aaatcttatt ttttagattc
      721 ggaacctgct attagtagct tagcaccact aacaatcgat cgtggctggc catctgatca
      781 attcttgttc aacggaataa aagaacttta tacccaaaaa ggagaccagc ctctatttag
      841 ctttgttgtt accatgcaag gacatggagg ctatccaagt acggaagaaa tttatcctcg
      901 cgaagtcagc attaatggtt caacatctga atacttagct gaaacagaat ttttgaccag
      961 catgaaaaga acagatgaag catttgcaga tttaattact ttctttagca cttacaaaga
     1021 gccaacagtc atcgtcatgt acggcgatca ccaacctagt ttgactcagg aattttacgc
     1081 acaatttatg gatgaaaata atcctgccgc taaatattct acccctttag tgatttggtc
     1141 gaattttgat attagggagc gcgaatctac aacaatcagc ccaaactatc tcgttccata
     1201 tttgatggat attttatccg aatccgacta tgcccttcct cgatcacctt accaacaatt
     1261 tttgagtgat atgcaaatcg aagcacctat cattactagc tggggaaata tcgataataa
     1321 tggccaacaa attgaagacc tatcaaccct accactttac caaacctact tacaactaga
     1381 atacaatagt gccattgaca aacaaccttt aacagattta tatgagtgat aaaaatagcc
     1441 ttgctcggtt ttgagcaagg ctattttat
//
LOCUS       DASGCC010000184         1465 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.185, whole genome shotgun sequence.
ACCESSION   DASGCC010000184 DASGCC010000000
VERSION     DASGCC010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.185"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..890)
                     /locus_tag="U1404_001875"
     CDS             complement(<1..890)
                     /locus_tag="U1404_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HEM5348775.1"
                     /translation="MVKKYIDDLSLQTAMTEYNSSMVKGNEVQDQYDRSIGYVTLDFD
                     NENGNGEQVYAVVKNPNLPKDQVLEVTVLFRGSTGPNEVLSKPADVWNDWVENDLFLG
                     LRVFAQDHPNYTQNHDHASGQLKASSEALNTIMATYPNAKVNLYGHSLGSMDVQYAIA
                     NLSDTDINRLESAYIYNGPNIYGILDDQQKARVDSVKGLIHNYADPKDPVSMVGRDLD
                     KGSLDSVGMVHFVESKDIDLGNQHMTYGYQLDSSGNIKVLQTSSTEGINGTIIEMSRF
                     QQMKQTLSRGGFSSRETIYL"
     gene            complement(897..1277)
                     /locus_tag="U1404_001876"
     CDS             complement(897..1277)
                     /locus_tag="U1404_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5348776.1"
                     /translation="MKKVMKVIIGILLVIVIGIGGIGYMQHKEHEKMVAIATSEEARK
                     VYEDKIRREESVAFTNQGVIRTYKIDEASLEYNPMGGLMVDVFINDDREAYISFNLID
                     NGDGTYSSAYYIISAKFNHLLEME"
BASE COUNT          397 a          326 c          255 g          487 t
ORIGIN      
        1 tccagataga tggtttcacg cgaactgaag ccaccacggg atagggtttg tttcatctgt
       61 tggaagcgac tcatttcaat gatggtccca tttatccctt ccgtggaaga agtctgtagg
      121 accttaatat tgccagaaga gtctaactga tagccatagg tcatgtgctg attgccaaga
      181 tcgatatcct tactttccac gaagtggacc atcccaacgg aatctaaact tcctttgtct
      241 aggtcacgtc cgaccatact gacaggatcc tttggatctg cataattatg aatcagccct
      301 ttgacggagt cgacccgtgc tttctgttgg tcgtctagga tgccgtatat attagggcca
      361 ttatagatat acgcgctctc taagcggtta atatcggtgt cagataaatt agcaatggcg
      421 tactggacat ccatcgaacc tagggagtgg ccgtacagat tgacttttgc atttgggtag
      481 gtagccatta ttgtatttag agcttctgag gatgctttta attgtccact cgcatggtca
      541 tgattctggg tatagttcgg atgatcttga gcaaagacgc gcaaacctaa aaaaagatcg
      601 ttttcaaccc agtcattcca cacatctgca ggttttgaca acacttcatt tggtccagtc
      661 gaacctcgaa agagaaccgt aacttccaac acttggtctt tgggcaaatt tggatttttc
      721 acgacagcat aaacctgttc accattgcca ttctcattgt cgaagtcgag ggtgacataa
      781 ccaatacttc gatcgtattg atcttggact tcattacctt taaccatact agagttatat
      841 tcagtcatag cggtttggag actgagatca tctatatatt ttttaaccat ttttctttat
      901 tccatttcta gtagatgatt aaatttagct gaaataatat aatacgccga actatatgtc
      961 ccatctccgt tatcaatcaa attaaaacta atatatgctt ctctatcgtc atttataaat
     1021 acgtcaacca taagtcctcc cattggatta tattctaaac tagcctcatc aattttataa
     1081 gttcgaatga ccccttgatt agtaaaggca actgactcct ctcttctaat tttatcttca
     1141 taaaccttcc tcgcctcctc gctagtagcg atagcgacca ttttctcatg ttccttgtgt
     1201 tgcatatatc caattcctcc tattccaatc acgattacta acaaaatgcc gataataact
     1261 ttcattactt ttttcatcct agacctcctt tatgaaatcc tatcaagtaa gacgctttct
     1321 tacctcatag tataacataa atttagtggt ttaaatatat aagaaaaggc tacaagtttc
     1381 aattggtcca ttcttgtatc ctctgtgcta atgtctggtc ttccgttact ttctgctcga
     1441 tccctgcttg gatttgactt tctaa
//
LOCUS       DASGCC010000185         1444 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.186, whole genome shotgun sequence.
ACCESSION   DASGCC010000185 DASGCC010000000
VERSION     DASGCC010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.186"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            78..557
                     /gene="rlmH"
                     /locus_tag="U1404_001877"
     CDS             78..557
                     /gene="rlmH"
                     /locus_tag="U1404_001877"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEM5348777.1"
                     /translation="MKIKLITVGKLKEKYLKEGIAEYSKRLGRFTKLDMIELPDEKTP
                     DKASQAENEQILKKEADRIMSKIGERDFVIALAIEGKQFPSEEFSQKLSDIAVNGYSD
                     ITFIIGGSLGLDSCIKKRANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYHK"
     gene            582..1265
                     /locus_tag="U1404_001878"
     CDS             582..1265
                     /locus_tag="U1404_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HEM5348778.1"
                     /translation="MNQKEYRVFEGLRIACSLTFISGYLNAFTFVTQGGRFAGVQSGN
                     VISLAYFLAKGDLAQVVNFSIPILFFVFGQFFTYLARRYFEKQTWSWHFGSSVMMLVL
                     ILLTIILSPIMPASFTIASLAFVASIQVETFRRLRGAPYANVMMTGNVKNAAYIWFKG
                     VIEKDSELRKTGRNILLTIIGFMLGVIISTHLSFQFEEYALIGLILPVLYINYELWQE
                     KRPTRGRSK"
     gene            complement(1263..1336)
                     /locus_tag="U1404_001879"
     tRNA            complement(1263..1336)
                     /locus_tag="U1404_001879"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1300..1302),aa:Arg,seq:tct)
BASE COUNT          471 a          219 c          274 g          480 t
ORIGIN      
        1 gtgaaaaact gtagccatat cctaattttc taaaaatatt ttctgtcgta tgcttgtgga
       61 tatgttacaa ttattttatg aaaataaaat tgattaccgt tggaaaattg aaagaaaagt
      121 acctcaaaga aggtattgca gaatatagta aacgattggg acgatttact aagttggata
      181 tgattgagct tcctgatgaa aaaacaccag ataaagccag tcaggcagag aatgaacaaa
      241 tattaaaaaa agaagccgat agaattatgt ctaaaattgg agagcgagat tttgtcattg
      301 ccttagcgat agaagggaaa caatttccat cggaagaatt tagtcaaaag ctatctgata
      361 ttgcagtaaa tgggtattca gatataactt ttatcatcgg tggtagtttg ggtctcgatt
      421 cttgtattaa aaaaagagct aatttgttga tgagttttgg acagttgaca cttccacatc
      481 aattaatgaa attagttctc atcgagcaga tttatcgtgc atttatgatt cagcagggaa
      541 gcccatatca taagtagttt cacgtgaaac aaggagtgaa aatgaatcaa aaagagtatc
      601 gtgtttttga gggattgaga attgcttgtt cattaacgtt tatcagtggt tatttaaatg
      661 cctttacttt tgtgactcag ggtggtcgct ttgctggcgt acaatctgga aatgttattt
      721 ccctagctta ttttttagct aaaggtgacc ttgcgcaggt agttaatttt tccattccca
      781 ttttattttt tgtattcgga caatttttta cctacttagc aagaaggtat tttgaaaaac
      841 aaacatggtc ttggcacttt ggtagtagtg taatgatgtt agttcttatt ttactaacta
      901 tcattctctc acctataatg cctgcgtctt ttacaattgc tagtctagcc ttcgtagcct
      961 ctattcaagt agaaacattt agaaggttac gaggtgctcc gtatgccaat gtgatgatga
     1021 cagggaatgt caaaaatgct gcttatatct ggtttaaagg agttattgaa aaagattcag
     1081 aacttagaaa aacaggtaga aatatcttat taactattat agggtttatg ctaggtgtca
     1141 tcatatctac tcacctatcc ttccaatttg aagaatatgc ccttatcggt ctgattttgc
     1201 cagttttata tattaattat gaattatggc aagaaaaaag acctactcga ggtaggtcta
     1261 aatgattcca gcaggattcg aacctgcgac cgttcgctta gaaggcgaat gctctatcca
     1321 gctgagctat ggaacctcaa ctattttatt ttacattaaa caaagcactc tgtcaataca
     1381 ataaaaaatc aaaaaatgta ttgacaaaca aagtcacatg tattatacta gttattgttc
     1441 taaa
//
LOCUS       DASGCC010000186         1414 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.187, whole genome shotgun sequence.
ACCESSION   DASGCC010000186 DASGCC010000000
VERSION     DASGCC010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.187"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(33..764)
                     /locus_tag="U1404_001880"
     CDS             complement(33..764)
                     /locus_tag="U1404_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348779.1"
                     /translation="MRESSIIKNSLFWEWRCLTTSSQFYIYLILSGMYYLLLALLNFF
                     EVGFGEYLLKGPGLDGIETISLLSYLLFQAQNIFLLQQLFSGLSTTNFNLTILRIGSI
                     KDWFLVKLVSLIFLSLLLGLFQTVPLFFIGNMDYLFFLHFFVVNSTNFILFSSLLFLL
                     FHFDFSDAVSFCITYSLLVFIIFSGEILGENTNYFVTILARVAEYEKNSNLSLFIAIF
                     FEIILSAAILSFIKIRYSLGGKIHE"
BASE COUNT          602 a          217 c          212 g          383 t
ORIGIN      
        1 ttttgctaag gttttcaatt tttataatac tattattcat gtattttacc tcccaaagaa
       61 tatctgatct ttataaaaga aagtatcgcc gcacttagta taatctcaaa gaatatagcg
      121 atgaaaagtg acaaatttga atttttctca tactcagcta cccgtgccaa tatcgtaacg
      181 aaataatttg tattttctcc taaaatttct cctgaaaaaa tgataaaaac gagtaaagaa
      241 taagtaatgc aaaacgagac agcatccgaa aaatcaaaat ggaacaataa aaagagcaat
      301 gaactgaaca aaataaaatt agtgctatta actacgaaaa aatgcaagaa aaacaaatag
      361 tccatattac ctataaaaaa cagaggaact gtttgaaaca accccaataa aagtgataga
      421 aatatcaagg acacaagctt gacaagaaac caatctttta tactcccaat tcttagtatc
      481 gttaagttga agtttgttgt tgataaacca gaaaatagct gttgcaacaa aaaaatattc
      541 tgtgcttgaa acaataggta agaaagtaga ctaatggttt ctatgccatc caacccagga
      601 ccttttagaa gatactcacc gaagccgact tcaaaaaaat tcaatagcgc taacaataag
      661 taatacatcc ctgataaaat tagataaata taaaactgag agctagtagt caaacaacgc
      721 cattcccaga ataaagaatt ttttataatg gaactctccc tcattcctat tcctcccact
      781 ctgtatttct tattttatat aggtttaaca aaatgaaaaa aagcaagaga attagccaat
      841 acaataactc cttgtggtaa cttactgatt ttaaaatata gtgatggata ggaaagactt
      901 gactaatggt tgcattgatc ggataaaacc agaaaacaga ttgtattaac aaaaatgaga
      961 aaagattagc catgactgta cttccttttt gaaaaagaag aaaattaaac aaggctattt
     1021 ccgagaggaa aataagataa cataaaaaac taaacaaggg caaaagtata ctttgaaaat
     1081 tagaaacgta agatatttca taaacttctg atagaagtgg ttgatgtata gaagaaattg
     1141 aaaaagaaaa cgaatttacc aaccccatca aaaataccag acacatcaga agaaatacaa
     1201 ataagaatgg aagtagcaag ctataattta ataaaaagta atacttatct ttgatggata
     1261 aaaaacgcag tgtgacaaat gtatctcttg taaaaacttc tatacaaaaa aataaaatag
     1321 cagtgtagat aatcggtatc aggtagacac ctgttgttat atcttggcat agaatcagta
     1381 gccaggtaaa aacatttgga acaagttgat aatg
//
LOCUS       DASGCC010000187         1396 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.188, whole genome shotgun sequence.
ACCESSION   DASGCC010000187 DASGCC010000000
VERSION     DASGCC010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.188"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            48..446
                     /locus_tag="U1404_001881"
     CDS             48..446
                     /locus_tag="U1404_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348780.1"
                     /translation="MTEETLAQGILIGIWGTTLLFSFIWYILVAISNYILFKKAGYAG
                     WKSLIPIYNLYIQQCIAFGYEKRWFILFLLIPLAGPLYGIYLVYNFGRSFGLSAVQAI
                     FYVLLTPILNLYIAFNDGSRYQGPQEFFID"
     gene            complement(482..1396)
                     /locus_tag="U1404_001882"
     CDS             complement(482..1396)
                     /locus_tag="U1404_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEM5348781.1"
                     /translation="MNELELLARALGFIFVIGLGYTLKVKGIVRREDARIFSSLVMNI
                     TLPASLLVASATAQVSIDLYVPFILGILCNLFLDMVGYWEAKKSGQQTSVGLMQLSGY
                     NIGTFTLPFVQAFFPLSSLLSVIVFDAGNAIMVLGGNYSIAAGVDEEQERMTVATFIK
                     NLSRSVPLVVYLVSLSLAVCSIKLPRELISALTIASNANPFLAMLMLGILLDLKLNWQ
                     EISRLVYLLSLRLGANILIAGVIYFLLPIDKTMKIMLLVCLVSPISVMSPIYALKLGS
                     RSAEPANVNSLSILVSLVMMVLLIFLFV"
BASE COUNT          462 a          288 c          254 g          392 t
ORIGIN      
        1 ctaatactga tataatagaa ctataaaaaa gaaatggagt ttttattatg acagaagaaa
       61 cattagcaca gggaattctc attggcattt ggggtacaac actactattt tcatttattt
      121 ggtatatcct tgttgctatt tccaactaca tcctcttcaa aaaagcaggc tacgctggtt
      181 ggaaatcatt gattccaatc tacaatctct atatccaaca atgcatcgcc tttggctatg
      241 aaaaaagatg gttcattcta ttcttactga ttccgctagc aggaccatta tatggcatct
      301 atctcgttta caattttggt cgtagcttcg gtttatcagc tgtacaagct atcttctatg
      361 ttcttcttac acctatcttg aacctctaca tcgcctttaa tgatggaagt cgttaccaag
      421 gtccacaaga attctttatt gattaatata caatcaagcc cccgcacacg cggaggcttt
      481 tttaaacgaa tagaaaaata agaagaacca tcatgactag gctaaccaaa atagataagg
      541 agttaacatt ggcaggttca gctgagcgac tccctaactt taatgcataa attggggaca
      601 tgactgaaat cggagagact agacagacca gcaacatgat tttcatcgtt ttatcaatag
      661 gtagaagaaa ataaatgact cctgctatta gaatattcgc acccagcctc aaagagagaa
      721 gatagaccaa tcgactaatt tcttgccaat tcaattttaa atcaagcaag attcctaaca
      781 tgagcatggc taaaaaagga ttggcgttac tggctatcgt cagcgcagag ataagttcgc
      841 gtggtagttt gatagagcag actgctaacg ataggctaac tagatagact actagtggaa
      901 ctgagcgtga aagattcttt ataaaagttg caacggtcat tctttcctgc tcttcatcca
      961 caccagctgc gatactgtaa ttcccaccta gaaccatgat tgcattcccc gcatcaaata
     1021 cgatgacgct tagtagacta gatagcggaa aaaaagcttg cacaaatggg agtgtaaagg
     1081 ttccgatatt atagcccgat aactgcataa gcccgacgga agtctgttga ccagacttct
     1141 ttgcttccca gtatcccacc atatccaaaa aaagattaca aagaatccct aatatgaagg
     1201 gaacgtataa atctatagat acttgggctg tcgctgaagc tacaaggaga gaagctggta
     1261 gcgtaatatt catcactaag ctagaaaaga ttcttgcatc ttcccttcga acaatccctt
     1321 tgacttttaa tgtataacct aaaccgataa caaagataaa accgagagca cgggctaata
     1381 attcaagttc attcat
//
LOCUS       DASGCC010000188         1385 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.189, whole genome shotgun sequence.
ACCESSION   DASGCC010000188 DASGCC010000000
VERSION     DASGCC010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.189"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            14..1036
                     /locus_tag="U1404_001883"
     CDS             14..1036
                     /locus_tag="U1404_001883"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEM5348782.1"
                     /translation="MTVNIDWEKLGFSYMKLPYRFIAHFKNGQWSEGQLTEDAELHIS
                     ESSPALHYGQQAFEGLKAYRTKEGKLQLFRPDQNAERLQRTADRLLMEPVPTDLFIKA
                     CKEVVKANADYVPPYGTGGTLYLRPLLIGVGDIIGVKPAEEYIFTVFAMPVGNYFKGG
                     LAPTNFLIQDKYDRAAPNGTGAAKVGGNYAASLLPGQYAKKQGFSDVIYLDPATHTKI
                     EEVGSANFFGITADNEFVTPISPSILPSITKYSLLYLAEHRLGMKAVEREVLVEELDQ
                     FVEAGACGTAAVISPIGGIQIADKLHVLHSETEVGPVTRKLYEELTGIQFGDIEAPEG
                     WIVEVD"
     gene            1103..1336
                     /locus_tag="U1404_001884"
     CDS             1103..1336
                     /locus_tag="U1404_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2969 domain-containing protein"
                     /protein_id="HEM5348783.1"
                     /translation="MSKKDKKIEIQIEDSKVLVNREEFPGYRLVIGKKVIGEIAELAE
                     NNFAVIKNGNTESFYKKLEKAVGNIIENYNLSH"
BASE COUNT          410 a          296 c          315 g          364 t
ORIGIN      
        1 ttggagaaac tatatgacag tgaacattga ctgggaaaaa cttggttttt cttatatgaa
       61 actaccttat cgcttcatcg ctcatttcaa aaacggccag tggtctgagg ggcagctgac
      121 cgaagatgca gaacttcaca tttcagaaag ctccccagcc cttcactatg gccagcaggc
      181 cttcgagggc cttaaagcct atcgcaccaa ggagggaaag ctccaacttt tccgtccaga
      241 ccaaaacgct gagcgcctac aacggacagc tgaccgcttg ctcatggagc ctgtaccgac
      301 tgaccttttc atcaaggctt gtaaagaggt ggtcaaagcc aacgcagact acgttcctcc
      361 ctatggaaca ggtggcaccc tttatctccg tccgctcctg attggcgtcg gcgacatcat
      421 cggcgtaaaa ccagcagaag agtacatttt cacagttttt gccatgccag ttggcaacta
      481 cttcaagggt ggtttggctc cgaccaactt cctcattcag gacaagtacg accgtgcggc
      541 accaaatgga acaggggcag ctaaggttgg tggtaactac gcggcatcgc tcttaccggg
      601 ccaatatgcc aaaaagcagg gcttctcaga tgtcatctac ctggacccag ctacccacac
      661 caagattgaa gaagtagggt ctgctaattt ctttggtatc acagctgata acgagtttgt
      721 cacaccgatt tcaccatcaa tcttgccgtc cattaccaag tattctctct tgtatttggc
      781 agagcatcgt ctgggtatga aggctgtgga gcgtgaagtc cttgtcgaag aattagacca
      841 gtttgtcgaa gcaggggctt gcggaacagc tgcagtcatc tcaccaattg gtggtatcca
      901 gattgcagac aaactccatg ttctccatag tgaaacagaa gtaggacctg tcactcgtaa
      961 attgtatgaa gaattaacag gtatccagtt tggtgatatt gaagctcctg aaggctggat
     1021 tgtcgaagta gattaatttc agaaggcttg cacttgcaag ctcttctctt tttttgtaga
     1081 atagtaaaag tgaggtttga aaatgagtaa aaaagataaa aaaattgaaa ttcagattga
     1141 agatagcaaa gttcttgtca atagagaaga gttccctggc taccgccttg ttataggtaa
     1201 aaaagtaatt ggagaaattg cagaattggc tgaaaataac tttgcagtta ttaaaaacgg
     1261 aaataccgaa agcttttaca aaaaattaga aaaagcagtc ggaaatatta ttgaaaatta
     1321 taatttaagt cactaaaagg cttgtaatag tcgctatttt atgttagaat agtgactgtt
     1381 agtgc
//
LOCUS       DASGCC010000189         1296 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.190, whole genome shotgun sequence.
ACCESSION   DASGCC010000189 DASGCC010000000
VERSION     DASGCC010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.190"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(80..1105)
                     /gene="adhP"
                     /locus_tag="U1404_001885"
     CDS             complement(80..1105)
                     /gene="adhP"
                     /locus_tag="U1404_001885"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HEM5348784.1"
                     /translation="MKAVVVNPESTGVVVVDKELRSLEAGEALVQIEYCGVCHTDLHV
                     ANGDFGKVPGRVLGHEGIGIVTEIAPGVTSLKVGDRVSVAWFFQGCGMCEYCTTGRET
                     LCRTVKNAGYSVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTCYKAIKEAHL
                     EPGQWIAIYGAGGLGNLAVQYAKKVFNAHVIAVDINNNKLELAKEVGADVTINGLEVE
                     DVPGYIKEITGGGVHSTVVTAVSKVAFNQAIDSVRAGGYVVAVGLPSEYMDLSIVKTV
                     LDGIKVVGSLVGTRKDLEEAFHFGAMGLVVPVVQKRPVEDAEAVFNEMVAGTIQGRMV
                     LDFCHSH"
BASE COUNT          404 a          290 c          253 g          349 t
ORIGIN      
        1 ctaaagctgc ttctttttat tttagaaagc aaaaaagaag cgattggata atcacttctt
       61 gaaaatagtg gagaacgcat tagtgtgagt ggcagaagtc taagaccata cgaccttgga
      121 tagtaccggc aaccatttca ttgaagactg cttcggcatc ttcgacaggg cgtttttgaa
      181 cgactggaac aactagtccc atagcaccga agtggaaggc ctcttctaaa tctttacgag
      241 taccaactag tgagccgacc actttgatac cgtctagcac agtcttcacg atactgaggt
      301 ccatgtattc agatggaagt ccgacagcca ccacatagcc accagcacga acactgtcaa
      361 tagcttggtt gaaggctact ttggaaacag ctgttacaac agtagagtgt acaccgccac
      421 cagtaatttc tttaatatat ccaggaacat cttctacttc aagtccgttg atcgtcacat
      481 ctgcaccaac ttctttggcg agttccaatt tattattatt gatgtctacg gcgataacat
      541 gagcgttgaa gactttttta gcgtattgta cagcaaggtt tccaagtcca ccagcaccat
      601 agatagcaat ccattgacct ggttccaagt gagcttcttt aatcgctttg tagcaagtaa
      661 cgccagcaca agtgatagaa cttgcttgag ctggatcaag accttctgga acttttactg
      721 catagtccgc tgttacaata cattgctcag ccataccacc gtcaacagag tagccggcat
      781 tttttacggt acggcagaga gtttcgcgac cggttgtaca atattcacac ataccacagc
      841 cttggaagaa ccaagcaacg ctgacacggt caccaacttt tagactggta acaccaggtg
      901 cgatttctgt aacaataccg attccttcgt gaccaagaac gcgaccaggg accttaccaa
      961 aatcaccatt ggcaacgtgg aggtcagtgt gacaaacacc acagtactca atttggacca
     1021 aagcctcacc agcttcgagt gaacgaagtt ccttatcgac aacgacaaca ccagtagatt
     1081 ctggatttac aacgactgct ttcataagca gacctcctgt tttaatattt tatatacatt
     1141 tttggatgtg ttaatatagt tgttttatat tgttaagaat atcacaatat gaacaaaaat
     1201 gcaagagtag aaaaggaggg acaaatgaat ataaaattga aaattatcac gtaattacta
     1261 caaaattttc aaaaaaatct atttacatgg aagcgt
//
LOCUS       DASGCC010000190         1265 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.191, whole genome shotgun sequence.
ACCESSION   DASGCC010000190 DASGCC010000000
VERSION     DASGCC010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.191"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(385..1199)
                     /locus_tag="U1404_001886"
                     /pseudo
     CDS             complement(385..1199)
                     /locus_tag="U1404_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT          389 a          234 c          231 g          411 t
ORIGIN      
        1 aataaaaggc ctataagact atgacgggta aacccactat ggtcatatag agcctttttg
       61 agtgtagaaa aaagtcccct acgacctaca ctgataccca tttaaaatca aaaatagcca
      121 cctaccactc aaagtagata tggagcattt tgattttgtt attttttgag aaaaaaacag
      181 ctacttgaaa tccacaatcc tcaactcaaa cttataaatt aaggtttcac atgttataag
      241 tagcttagac ttgctatttt tgatttttat tgagtataag tggtaagcgc ctaataacaa
      301 ggtatattga aaaaggcttc aaagtccagt cgactctgga acctttttct atttacatgc
      361 tctcttatta gacttgttcg gtaactacat catctcatag ttgatgatgc cacaaatcaa
      421 ctcagctctt aattcaaacc gttttctacg attacgatag ggctgtgcca tgatttgaaa
      481 ggttttaaat ttggcattaa agtgttcaac ttcaatacgg attttagcta tctcttgatt
      541 caaccgtcta tccttttggg ttaaggggtg atgtttagaa cgcttagcag gaataaaggt
      601 attttcgtga aatttcaaga tacctaaata ccctaaatct acgaaaacaa gggtattttg
      661 gggcaaacta tagccaatac tctccttaaa aagggtaaaa tcatgcgtat gaccatctga
      721 aaaagccaat tgacaagcac gatggctagt caaatccagc atgatttgag tttttatggt
      781 atgtcttttc tttttaccag aataattctt gctttggttt ttttagggcg ttgaatagga
      841 ctttcagtga catcaatggc aacagtggcg ctagatgctt ctaagtggtc taaatcaaag
      901 agacctgaag aacgaagggt gtcctctaac catgtaatag tctcattgac agttgccaca
      961 cctacaccaa aatcaaatgc caacaagcgt tgagtggggt aatagcgtaa gtagcgcaag
     1021 gtcatgataa gctgctcttc catacttaga cggcgtgggc atcctccttt tcggtgttgc
     1081 tcttgataag cgtcagtgag acgatcaagc atcagttgaa acgtcgcttt tttaacacct
     1141 atcaacaatt tgaaattctc tgagtttaat tttaaggctt tttcgtatgt tgtttccata
     1201 gctttagtat accacttttg agttaccgaa caagtctaat tacaaattta ttggtatttt
     1261 ttatt
//
LOCUS       DASGCC010000191         1196 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.192, whole genome shotgun sequence.
ACCESSION   DASGCC010000191 DASGCC010000000
VERSION     DASGCC010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.192"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(37..>1196)
                     /locus_tag="U1404_001887"
     CDS             complement(37..>1196)
                     /locus_tag="U1404_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEM5348785.1"
                     /translation="ILIENNYLERVDRSGIKLVGSTWANQNLKNNKNVPLNWYPSTNV
                     VVRGNRIEKAGGDSLTVRDTDGALIEYNISADARYQNTGYNAGIWPFQASNTVIQYNE
                     SFRTHGVQDGQGLDLDHISNNSVMQYNYSHDNEGGFMLIMNWYEQTSPTVRYNISQND
                     KDKIFELARGGAQGTAIYNNTIYSDSKLTGRAGVIDMPSTSGGTGVKDIFLFNNIFYF
                     VDGEKMLVEASDAGKYKDNIHFYNNAYVGVEVPNDPRAITEGIELNGIGTGPIDNKSM
                     IANTGKYLTGQLDGYKIPFNSVLANSGVSKEDAITYFYEKLGIQQQIDFIENGSLNMS
                     PIEAFSLARQTNSIDAIARSYPKIDGVNYDIDFFGESILTDNLSIGAAQVK"
BASE COUNT          372 a          240 c          159 g          425 t
ORIGIN      
        1 ctatttgact taatgaaaaa taactagctg tttcactcat ttaacttgag cagcacctat
       61 agataaattg tctgttaaaa tcgattctcc aaagaagtca atatcatagt taactccatc
      121 aatttttgga tatgagcgag cgattgcatc tatactattc gtttgacgag ctaaagaaaa
      181 ggcttctatt ggggacatat ttaacgaccc attttcaata aaatcaattt gttgctgaat
      241 ccctaatttt tcatagaaat aagtaattgc atcttctttt gatacgccac tatttgccaa
      301 tacactgttg aaaggaattt tatacccgtc taattgacca gttaaatatt tcccggtatt
      361 tgcgatcatt gatttattat caattggtcc cgtaccaata ccatttaatt ctatcccttc
      421 agtgattgct ctaggatcat taggcacctc gacaccaaca taggcattat tataaaaatg
      481 aatattatct ttatatttac ctgcatcact tgcttcaaca agcattttct caccatctac
      541 aaagtaaaaa atattattaa ataaaaagat atcttttact cctgttccac ctgacgtact
      601 tggcatatca attacacctg ctcgtccagt taatttcgaa tcagagtaga ttgtattatt
      661 gtaaattgca gttccttgtg ctcctcctct agccaattca aaaattttgt ctttatcatt
      721 ctggctgata ttataacgaa ctgtaggaga tgtttgttcg taccagttca tgattaacat
      781 aaacccacct tcattatcat gactgtagtt atattgcatc actgaattat tagaaatatg
      841 atctaaatct aaaccctgac catcttgaac accatgcgtt ctaaatgatt cattgtattg
      901 aataactgta ttcgaagctt ggaaaggcca tatacctgca ttgtacccag tgttttggta
      961 tctagcatca gcagaaatat tgtattcaat caatgcacca tcagtatctc taacagttag
     1021 agaatcacca cctgccttct caatacgatt tcctctaaca actacatttg tagatggata
     1081 ccaatttaac ggaacatttt tattattttt caaattttgg tttgcccatg ttgatccaac
     1141 taattttatt cccgacctat cgaccctttc tagataatta ttttctatta atatac
//
LOCUS       DASGCC010000192         1145 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.193, whole genome shotgun sequence.
ACCESSION   DASGCC010000192 DASGCC010000000
VERSION     DASGCC010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.193"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(50..397)
                     /locus_tag="U1404_001888"
     CDS             complement(50..397)
                     /locus_tag="U1404_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348786.1"
                     /translation="MKHIVTKRNYKVGACAMALALLMTTAGGAVVNANTHQSFESSYG
                     FSGRGGDGGVLLKLKGPTESVNQGVGNVEPVNPPVTQMAPSEPKSWFGSFWGGVQRLW
                     RALCCGLGFCPSR"
BASE COUNT          368 a          234 c          166 g          377 t
ORIGIN      
        1 gactaaatat tacaagatta taaaatcact ataaaaaatc atgcacacct taacgtgatg
       61 gacaaaagcc taatccacaa caaagtgccc tccacaatct ttgtacacca ccccaaaatg
      121 aaccaaacca tgattttggt tcagaaggag ccatttgagt cacaggtggg ttgacaggct
      181 caacatttcc aaccccttga ttgacagatt cagtcggccc cttcagtttt aggagaacac
      241 caccatctcc tcctctacca gaaaaaccat atgacgattc aaaagactga tgagtatttg
      301 catttacaac tgcaccacct gcagtagtca tcaacaatgc aagtgccata gcgcatgcgc
      361 caactttata attacgtttt gttacaatat gtttcatgat gaaacatctc ctttgtatgg
      421 atatttgctt cctcctatcg gaaacgtagt aacagtatag cacaaaaaaa taactcaaaa
      481 accaacttta gaaaaagatt atataaaaac cagaaaacta cctgaaaaaa atgaaaacgt
      541 tatacaaaac gtagagaaaa tgatactatt tcgcccattt cacttatccc tatcaatttt
      601 caacatgata aaggatagca atttagtaat acctcttgtt gaaattttct cgtatattca
      661 atttaacgct cagaatattt ataatcacgt aaccgtcctg taggagtata tagaaaaaga
      721 ggttcaaagt catttcgact atgagacctt ttttctattt gcgtttattc tgatttttta
      781 gccagtggta ttgtcattca gtttatcttt gattacttag ctagtttgct ttgctgtact
      841 ttacataagc aacttgcctc gcaagtttta ttgccaacct gactgtggta aaggacttga
      901 caagttcatc aacaagtttt catttctagt tgttgaccat cctcagacct tttaatctcc
      961 tgctatgatt ggctttgcaa atctaatctc caaacttttt tgcatttcta agcgtaggta
     1021 gatgtgagtt tatttgtcat aatactattt tttgattttt gttaagtata gtttttccta
     1081 caataccata aatctttcta ctaccaatct ttattatgtc ggcgtttccc gagaatatca
     1141 tttat
//
LOCUS       DASGCC010000193         1126 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.194, whole genome shotgun sequence.
ACCESSION   DASGCC010000193 DASGCC010000000
VERSION     DASGCC010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.194"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..521
                     /locus_tag="U1404_001889"
     CDS             <1..521
                     /locus_tag="U1404_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HEM5348787.1"
                     /translation="RDFNILFMPVFSMNILLILFRPMITQLAIYRRAGDYNQFKQYQK
                     RIVKMVVGLAVLVLVGGIVLGIPALNILYGTNLNKYWLSFIITMLGGIASTFATICDN
                     MLTVLRKQKYLVISFAISCLLSILISNPLVEYYGILGAAIAFVSSMWTWFLISFVIYL
                     KLQKHLNWEVQE"
     gene            518..>1126
                     /locus_tag="U1404_001890"
     CDS             518..>1126
                     /locus_tag="U1404_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HEM5348788.1"
                     /translation="MKIEKLFLRLAIPFLLISIFVMPVTKVPDEATHAFMSWNILFDS
                     PTSRDTEAMNELRAADFAYSEPEIHAVDSTEYSSLFTKIRDFSKDKLSIDFSLKSLMS
                     TPQLIGLVVGKLIYPSYGMMVTIGRLFNTIVYIIGIYYLIKKIKYGKMTLFFVSLLPM
                     MIQQAGSLSYDVVNYLAVVAFFVFYVNLLVDKVLTTRKFINLI"
BASE COUNT          331 a          155 c          218 g          422 t
ORIGIN      
        1 aaagagattt taatatttta tttatgcctg ttttttcaat gaatattttg ttgattttgt
       61 ttagacccat gataactcag ttggctatat atagaagagc tggggactat aatcaattta
      121 aacaatatca gaagcgtatc gttaaaatgg ttgtcggatt ggctgtgtta gttttggttg
      181 ggggaatagt attggggatt ccagcattaa atattctcta cggaacgaat cttaataaat
      241 actggctcag ctttattata acaatgcttg ggggaattgc gagtaccttt gcaaccattt
      301 gtgataacat gcttactgtt ttgaggaagc aaaagtatct cgtaatttca tttgcaattt
      361 cttgtttatt atccatattg atttctaatc cactggtaga atattatgga atattggggg
      421 cagctattgc ttttgttagt tcgatgtgga cttggttttt aatttctttc gtaatatatc
      481 taaaattgca aaaacatttg aattgggaag tacaagaatg aagatagaaa aattattttt
      541 aaggttagca atcccctttt tgttgatttc aatatttgtt atgcctgtga caaaggttcc
      601 tgatgaagca acacatgctt ttatgtcgtg gaatatatta tttgattctc cgacaagtag
      661 agatactgaa gcaatgaatg aattacgggc agcagatttt gcgtattcag aaccggagat
      721 tcatgcagtt gattctacag aatattcaag cctttttacc aaaattcgtg atttttcaaa
      781 ggacaaatta tctatcgatt tttctctgaa atcgttaatg agtacacctc agctaattgg
      841 tctagttgta ggtaaattga tttatccgtc atatggtatg atggtcacta tagggcgcct
      901 ttttaataca atagtctata ttataggtat ctactatttg ataaaaaaaa taaagtatgg
      961 gaagatgacc ctgttttttg tctcactttt acctatgatg attcagcagg ctggctcact
     1021 gtcttatgat gtggtgaact atctggctgt tgttgcattt tttgtttttt atgttaactt
     1081 attggtagac aaggtactga ccaccaggaa atttattaac ttaata
//
LOCUS       DASGCC010000194         1001 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.195, whole genome shotgun sequence.
ACCESSION   DASGCC010000194 DASGCC010000000
VERSION     DASGCC010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.195"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..>1001)
                     /locus_tag="U1404_001891"
     CDS             complement(<1..>1001)
                     /locus_tag="U1404_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oligosaccharide repeat unit polymerase"
                     /protein_id="HEM5348789.1"
                     /translation="DYNVSAGLITLSGIFVFFVSEMMGNIFWGKRVKRTTYLNFDFQE
                     ITIDKWKLYFLIIFNFFIVIWYFLKIRSIVGGGSIGEIFQEYRRIGVNQLEGKDVETV
                     GGIINQFLKIVEGTGYVAGFTLINNYIYKSKKWQQNVMLVILIGLSILPGLFGAGRTQ
                     VLKLLSSFAIMSYVIWQQKYGWNKVMSWKVLGKGTLAAFIGIPAFYYSLALLGRSTTR
                     SLLDYSSNYLSSGMILFSKYIEEPVTRIMWGEESLPNILKVLHALNLSPASTSYNLEF
                     RRLGIGYSNIYSFFRRPYHDFGLLGMYIFVALIALWFSFLYFGKIKYMSQSSVTSRW"
BASE COUNT          370 a          205 c          125 g          301 t
ORIGIN      
        1 accatcttga tgtaacacta ctttgtgaca tatacttaat ctttccgaaa taaagaaaag
       61 aaaaccacag agctattaat gcaacgaaaa tatacattcc aagtaagcca aaatcatggt
      121 acggacgcct aaaaaatgaa taaatattac tgtatccgat acctaacctt ctaaattcca
      181 gattatatga agttgaagct ggtgataaat ttaaagcatg aagaactttt aaaatattcg
      241 gtaaagattc ctctccccac ataatacgag taacaggctc ttcaatatac tttgaaaata
      301 aaatcatacc actagataaa taatttgatg agtagtctaa aagtgatcga gtcgtactcc
      361 gccccagtaa agcaagcgaa tagtaaaatg ccggaatccc tataaatgct gctaatgtcc
      421 cttttcctaa tactttccat gacatcactt tattccaacc atatttttgt tgccaaatta
      481 cgtaagacat tatcgcaaaa gagcttaaaa gctttaagac ttgagtccta ccagctccaa
      541 acaaccctgg taaaatagat aatcctatca aaataaccaa cattacattt tgctgccatt
      601 tcttagactt ataaatataa ttatttatca atgtgaagcc tgcaacgtat ccagtaccct
      661 ctacaatttt taaaaattgg ttaattattc cacctacagt ttcaacgtct ttcccttcta
      721 gttgattcac accgatacga cgatattctt gaaatatctc tccaatactt cctccaccta
      781 caatggaacg aatttttagg aaataccaaa tgactatgaa gaagttaaaa ataattagaa
      841 agtataattt ccatttatca attgtaattt cttgaaaatc aaagttcagg taggtagttc
      901 gctttacgcg tttaccccaa aaaatatttc ccatcatctc tgaaacaaaa aatacaaaaa
      961 ttccgctcaa cgtaattaat ccagcactaa cattatagtc g
//
LOCUS       DASGCC010000195          971 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.196, whole genome shotgun sequence.
ACCESSION   DASGCC010000195 DASGCC010000000
VERSION     DASGCC010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.196"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..910)
                     /locus_tag="U1404_001892"
     CDS             complement(<1..910)
                     /locus_tag="U1404_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISSsu2 family transposase"
                     /protein_id="HEM5348790.1"
                     /translation="MLDQIKAHLLDSINDIVSSANQFVLHPEKDFSRQSQLTMKTMIQ
                     AILTMGGNTLAKELLDLDLPVSQSAFVQRRYQIKHQAFKTLFRDITSKIPISDNLPIL
                     AVDGSDVILPRNRFDKTTSFQTGPHHTPYNLIHINALYNLEQEIYHDLRIQDNREVDE
                     RAAFIDMMKTSSFKQALVIMDRGYESYNVMAHCQERNWSYIIRIRDGNHSMKSGFNLP
                     DTPCFDEAFDLNICRKQTNDMKELYRDFPNQYHFLPHNASFDFLLNSSRKSDPLQFYE
                     LHFRMVRLEIKPGFFETLVTNTDYSPE"
BASE COUNT          308 a          165 c          201 g          297 t
ORIGIN      
        1 tttctggaga ataatcggtg tttgtcacca aagtttcaaa gaaacctggc ttgatttcga
       61 gacgcaccat tcgaaaatga agttcgtaaa actgaagtgg gtcgcttttt cggctagagt
      121 ttagtaaaaa gtcaaaggaa gcattatgag gtaaaaaatg atactgatta gggaagtctc
      181 gatacagttc tttcatgtca ttggtttgtt tgcgacagat gtttaggtca aatgcctcat
      241 caaaacaagg ggtatcaggg aggttaaatc ctgatttcat agaatgattc ccgtcacgaa
      301 tacgaataat ataggaccaa tttctttctt ggcagtgagc catgacattg taggattcat
      361 accccctatc cattattacc agagcttgtt tgaaagaaga ggtcttcatc atgtcaataa
      421 aagctgcacg ttcatcaacc tctcgattat cttggatccg taaatcatga tatatctctt
      481 gttcaagatt gtagagagca ttgatatgaa taagattgta aggagtgtga tgtggtccag
      541 tttgaaaaga ggtcgtttta tcaaaacgat ttcttggtag aatcacatca ctgccatcaa
      601 cagccaggat agggagatta tcagagattg gaattttaga agtaatatcc ctaaaaagtg
      661 ttttaaaagc ttggtgttta atctgatacc gtcgttgaac aaaggcagat tgagagacag
      721 gcaaatctaa atcaagtagc tctttggcta aggtattacc acccatggtc agtatggctt
      781 gaatcatggt tttcatagtt agctgacttt gccgactaaa atctttttca ggatgaagca
      841 caaactgatt ggcactagaa acgatgtcgt taatactatc aagtaaatga gctttaatct
      901 gatctagcat gacttttccc cttttatttt tagtgtaaca taaaaactaa cccaccacaa
      961 aacgtgatag g
//
LOCUS       DASGCC010000196          970 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.197, whole genome shotgun sequence.
ACCESSION   DASGCC010000196 DASGCC010000000
VERSION     DASGCC010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.197"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(80..844)
                     /locus_tag="U1404_001893"
     CDS             complement(80..844)
                     /locus_tag="U1404_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5348791.1"
                     /translation="MIKDERVLELIEVIKKKKRIAVKELVEITFSSLSTLRRDLIFLE
                     NQGLIKRKHGYVTLSSINTMELSHQIREGESTRQKRFIANLAKDFIRSGMCIYLDSST
                     TVYELCPHLAELDNLIIFTNGLHTAQTLSETVRDNSKIFITSGEVKHQSCSVVNYDKE
                     NSLLDHFNIDLAFCSARGIDDQYVYEASLSQAISKKSIIDKAHETILLIDSSKFYKTG
                     FFKINPLSKYTTFISDSMPDQKLLDAVELFDGEWAY"
BASE COUNT          335 a          138 c          149 g          348 t
ORIGIN      
        1 ttggtaatag attccagtta tttaagatta gtaaatgaag tttttatgaa tgaatatagt
       61 agaaattgag taatttgact taatatgccc attctccatc aaataattct actgcatcta
      121 ataatttttg gtctggcatg ctatcagaaa taaaggttgt atatttagaa agtggattaa
      181 ttttgaaaaa tccagttttg tagaattttg aactatcaat caacaaaatg gtttcatgtg
      241 ctttatcaat aatactcttc tttgaaattg cttgacttaa agatgcttca taaacatatt
      301 ggtcatcaat gcctcttgct gaacaaaaag ccaaatctat attaaagtga tctaataaag
      361 aattttcttt atcatagttg actacagaac aagattgatg ctttacttct ccagacgtaa
      421 taaaaatttt agaattatct ctaacagtct cagataaggt ttgtgctgta tgtagaccat
      481 ttgtaaaaat aattaaatta tctagttcgg cgagatgagg acagagttcg tagacagtcg
      541 tactggaatc aagataaata cacataccag agcgaataaa atctttggcc agattagcta
      601 tgaatctttt ttgacgagta ctttctcctt cacgtatttg atgagaaagt tccattgtgt
      661 taatagagga aagagttaca taaccatgtt ttcgcttgat aaggccttga ttttctaaaa
      721 aaattaaatc acgacgtaga gtactaaggc tggagaaagt gatttctaca agttctttta
      781 cagcaattct ttttttcttt ttaataactt caatcagttc aagtacacgt tcatctttta
      841 tcatagcatc ctccaatata aaacttcaac tacattatag cataatttgg aggaatttga
      901 attatttttg tcaatttcag gtttaatata tgaattttat tcaagtaagc gttcacatat
      961 tgaaaaataa
//
LOCUS       DASGCC010000197          966 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.198, whole genome shotgun sequence.
ACCESSION   DASGCC010000197 DASGCC010000000
VERSION     DASGCC010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.198"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(3..911)
                     /locus_tag="U1404_001894"
     CDS             complement(3..911)
                     /locus_tag="U1404_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEM5348792.1"
                     /translation="MAEKRFGILITLIAGIAWGLSGVSGQYLMSRGVSVDMLTSLRLL
                     VSGFFLVGLAYATAKEQLLIVLKNRKALLGIFVFAMLGLVLNQMAYLQAIYHTNAGTA
                     TVLQYLCPILVLAYTCLKNREKPSGIELISIILAVAGTFLIATHGKLDELAVTPIGLF
                     WGIFSAFTYALYIILPGKLIRQYGSITVIGLGMLMGGFVVTLGLQTWQHRLPIDGGSF
                     LGLLGIVGVGTIFAYTAFLKGVSMVGPVNGSLLASIEPIASVFFAVWLVNEQFYAIDF
                     VGMLFILLAVLLISLKDILVAQKSIG"
BASE COUNT          350 a          240 c          151 g          225 t
ORIGIN      
        1 tattaaccaa tactcttttg ggcaaccaat atatctttta aagaaataag caaaacagca
       61 agtaaaataa acaacattcc aacaaaatca attgcataaa attgttcatt gaccaaccat
      121 actgcaaaaa agacagatgc aatcggctca atcgaggcca aaagactgcc attgacagga
      181 ccaaccatac tgacgccttt aagaaaggca gtataggcaa aaatcgtccc gactccgaca
      241 atacctaaca ggcccaggaa acttccacca tcaataggaa gacgatgctg ccaagtttgc
      301 aaaccaagcg tgactacaaa accacccatt aacatcccta aaccaatcac tgttatactg
      361 ccgtattgac ggatcaattt acctggcaaa ataatatata gcgcataagt aaaggctgaa
      421 aagattcccc agaacaaacc gattggagtc actgccaatt catctaattt tccatgagtc
      481 gcaatcaaaa aagttcctgc tacggctaag ataattgaaa tcaactcaat ccctgatggt
      541 ttttccctat ttttcaaaca ggtataagcc aagactaaga tagggcaaag gtattgtaaa
      601 accgtagccg ttccagcatt ggtatgatag atggcttgta aataagccat ctggttaaga
      661 accagaccca acatcgcaaa aacaaaaatt cccaacaagg cttttctatt tttcaacact
      721 atcaacagct gttctttcgc tgtagcataa gccaggccaa cgagaaagaa tcccgatacc
      781 aacaaacgca gggaggtaag catatccact gaaacaccac gtgacatcaa gtactgtcca
      841 ctcactccag acaagcccca ggctatacct gctattaatg taatcagtat cccaaatctc
      901 ttttccgcca ttatatctcc ttctcacact gtgaatactt tcattatacc aaaagagcag
      961 gacacc
//
LOCUS       DASGCC010000198          960 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.199, whole genome shotgun sequence.
ACCESSION   DASGCC010000198 DASGCC010000000
VERSION     DASGCC010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.199"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..374)
                     /locus_tag="U1404_001895"
     CDS             complement(<1..374)
                     /locus_tag="U1404_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009853894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM5348793.1"
                     /translation="MRRFFKSEVFKYLFFGVLTTVVYIVFREFLFILMHNVTASVLVA
                     NVIAIVFAFFVNDYFVFEQRRSGWVGRFVKFFLARLTTLGLDMLLAFLLIEQFPEIIG
                     QFVQYDFVWINRIEMYLSQILI"
     gene            complement(429..>960)
                     /locus_tag="U1404_001896"
     CDS             complement(429..>960)
                     /locus_tag="U1404_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM5348794.1"
                     /translation="LTPYLLNQAEGKLSILLNNKWLTNQKSFSQRQLWQLTSNTEGQE
                     TVLELRYSMDNVSLNGAGLVRADNDAIKRVLAERLEQNMTVTEWSNTCVKGVVNITDD
                     SSIMMTTIPYSKGWTVKVDGKAVMTKKAWNSLLSFPISAGKHTIEISFFPQGLFIGAM
                     LSLVFLGVVIGLYYKD"
BASE COUNT          336 a          214 c          120 g          290 t
ORIGIN      
        1 ataataagaa tttgagataa atacatttca attctattaa tccatacaaa atcatattgg
       61 acaaactgac ctataatttc tggaaattgc tcaataagaa gaaaagccaa aagcatatcc
      121 aaaccaagag tagttagcct tgctagaaaa aatttaacaa atcgccctac ccaaccactt
      181 cttctttgct caaatacaaa atagtcgttc acaaaaaatg caaaaacaat agctattaca
      241 ttggccacta aaacagaggc tgttacatta tgcattaaga taaaaagaaa ctctctaaaa
      301 acaatataaa caactgttgt taaaactcca aaaaataagt atttgaaaac ttcagattta
      361 aagaaccttc tcatcagcag atagcttttt cccaccttta ttacgtcctc ctaacagtcc
      421 ctattctttc aatctttata atacagacca atgacaacac ctaaaaaaac taaactcaac
      481 atggctccta taaataatcc ttgtggaaag aaagatatct caatagtgtg tttccctgca
      541 cttatcggaa acgataacaa gctattccac gccttcttag tcatgacagc tttcccatca
      601 acctttactg tccacccttt actataggga atagtggtca tcattatact actatcatca
      661 gtaatattta ccactccttt aacacatgta tttgaccatt ctgtaaccgt catattctgt
      721 tccaaacgct ctgccaacac ccgcttaatc gcatcgttgt ctgcacgcac aagccctgct
      781 ccatttaaac tgacattatc cattgaatac cgcaattcca gaaccgtttc ctgcccttca
      841 gtatttgaag tgagttgcca aagttgtctc tgagaaaaac tcttttgatt cgttaaccat
      901 ttattattaa gtaatattga aagtttacct tctgcttggt ttaaaagata tggggttagg
//
LOCUS       DASGCC010000199          881 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.200, whole genome shotgun sequence.
ACCESSION   DASGCC010000199 DASGCC010000000
VERSION     DASGCC010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.200"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            76..387
                     /locus_tag="U1404_001897"
                     /pseudo
     CDS             76..387
                     /locus_tag="U1404_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637882.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
     gene            complement(387..654)
                     /locus_tag="U1404_001898"
                     /pseudo
     CDS             complement(387..654)
                     /locus_tag="U1404_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735813.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
     gene            656..881
                     /locus_tag="U1404_001899"
                     /pseudo
     CDS             656..881
                     /locus_tag="U1404_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637882.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
BASE COUNT          287 a          132 c          188 g          274 t
ORIGIN      
        1 tgctacaatg aaagtccgat gttttatata aaaaacggta taagtatgca caggattatt
       61 ttaaaggaga atatgatgat gaaaaaatat attatgacag gattggtttt gttggcaacg
      121 atgaccctaa gtgcttgtag tggaaatact actcaagaag atacttccct gaaggatgtt
      181 caggaaaagg gaaaactaat tgttgcattg aatccagaat ttccaccatt tgagtttaga
      241 acactggttg atggcaaaga tacaatcgtt ggagctgaca ttgagcttgc aaaagccatt
      301 ggtcaagaat tgggtgtaga agtcgaattt tcagcgatga gttttgataa tgttttgaac
      361 aatgtccagt cagggcaatc ggatattacc ttctgtgatt ttaattgatt aatcagctct
      421 ccgttcgaag ctagagcaat aaccgtggaa gacggaagct gttctttaat aatttgttct
      481 tgaatagaac ctttttgtgc tcctatattt gcctcagcta gagaatcaag cgatgtatat
      541 tgtgcaagat cctctttatt tataataact ttattggttg aggtgtagta aggaatggaa
      601 aaatcataca ccatacactt ttgcacgctc ttcagtggct gaaattcctg aaatggtaga
      661 agcagttatt tttgaagagc cgattgcgaa agcctatgtt gccaaaaatg atgacttggt
      721 tattttagat actgagataa aaagtagcta ttcagatgcc tatgctattg ccttaccaaa
      781 aggaagtaca gctttaaagg aaaaagttga ctctgtcatt acaaaactag tggaatctgg
      841 acagatggat caatttgttc aagaagccta tgaattatcc a
//
LOCUS       DASGCC010000200          827 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.201, whole genome shotgun sequence.
ACCESSION   DASGCC010000200 DASGCC010000000
VERSION     DASGCC010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.201"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..>827
                     /locus_tag="U1404_001900"
     CDS             <1..>827
                     /locus_tag="U1404_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEM5348795.1"
                     /translation="GGTTDKGVTYDGKTITATVTVTDNGSGELSAAVSYSDETPFNNT
                     YAVSGTRAELAVKKTLTGRELKEDEFEFVLKNKANEEVATAKNDKDGNVKFKELTFDK
                     AGTYTYTVTEKNGGTTDKGVTYDGKTITATVTVTDNGSGELSAAVSYSDETPFNNTYA
                     VSSTRAELAVKKTLTGRELKEDEFEFVLKNEANEEVATAKNDKDGNVKFKELTFDKAG
                     TYTYTVTEVVGGDTAIIYDSLKIKVTVVVTDDGEGKLIAKVEYPEDIEFNNEYVEPTT
                     "
BASE COUNT          286 a          125 c          194 g          222 t
ORIGIN      
        1 ggtggtacaa ccgataaagg tgtcacttat gatggtaaga ccattactgc aaccgtaact
       61 gtaacagata atggttcagg tgaattgagt gccgctgttt catacagtga tgagacacca
      121 tttaacaata cgtatgccgt atcaggtact cgtgcagaac tggctgttaa gaaaacatta
      181 accggtcgtg agttgaagga agacgaattt gagtttgtat tgaaaaataa agcaaacgaa
      241 gaagtcgcca ctgctaaaaa cgataaagat ggtaatgtga aattcaaaga attgaccttt
      301 gataaggcag gtacttacac ttatacagtc actgaaaaga atggtggtac aaccgataaa
      361 ggtgtcactt atgatggtaa gaccattact gcaaccgtaa ctgtaacaga taatggttca
      421 ggtgaattga gtgctgctgt ttcatacagt gatgagacac catttaacaa cacgtatgcc
      481 gtatcaagta ctcgtgcaga actggctgtt aagaaaacat taaccggtcg tgagttgaag
      541 gaagacgaat ttgagtttgt attgaaaaat gaagcaaacg aagaagtcgc tactgctaaa
      601 aacgataaag atggtaatgt aaaattcaaa gaattgacct ttgataaggc aggtacttac
      661 acttatacag tcactgaggt tgtgggtgga gatacggcga ttatctatga tagtcttaaa
      721 attaaggtaa ctgtagttgt tactgatgat ggtgagggta aacttattgc taaagttgag
      781 tatcctgagg atattgagtt caataatgaa tacgttgagc caacaac
//
LOCUS       DASGCC010000201          817 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.202, whole genome shotgun sequence.
ACCESSION   DASGCC010000201 DASGCC010000000
VERSION     DASGCC010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.202"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..141)
                     /locus_tag="U1404_001901"
     CDS             complement(<1..141)
                     /locus_tag="U1404_001901"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348796.1"
                     /translation="MNIEFFGPPGTGKTYITEKLTGISRQEQKDNSHKKSIRLLKKFS
                     KYS"
     gene            complement(157..>817)
                     /locus_tag="U1404_001902"
     CDS             complement(157..>817)
                     /locus_tag="U1404_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5348797.1"
                     /translation="LLKDELIQRGIVNVEIIPNFRRMDPIDISKVKADDYSIPFKFCT
                     FSRVIKEKGIGDAIEAIEAINTKNKSNLCQLDIYGPIAKEYQVEFQQLLEESSEMINY
                     VGEVSSDEAVEVLKNYYGVLFPTYWPSEGSAGTISESFFAGVPVIATDWRCNAEMIKD
                     GIDGIIYPGNYAQNLVDGIDWLISKNADIIDIKRSCIEASDYYQPDKHIARLVKLLNV
                     K"
BASE COUNT          256 a          167 c          106 g          288 t
ORIGIN      
        1 ggaatatttt gaaaattttt ttagcagtcg aatacttttt ttatgcgaat tatctttttg
       61 ttcttgccta ctaattcctg tcaatttttc agtaatatag gtttttcctg taccaggagg
      121 gccaaaaaat tcaatattca tcaataaagg aactccttat tttacattta gtaacttcac
      181 tagtctagct atgtgtttgt caggttgata ataatccgat gcttctatac aagaacgctt
      241 tatatcaata atatctgcat tcttagaaat aagccaatct attccatcga ctaaattctg
      301 agcatagttt cctggatata tgatcccatc aataccatct tttatcattt cagcattaca
      361 acgccaatca gttgctataa caggtactcc agcaaaaaaa ctttccgata ttgtcccagc
      421 actaccttca ctcggccaat aggtaggaaa aaggacacca tagtaattct ttaaaacttc
      481 caccgcctca tctgaagaaa cttcaccgac ataattaatc atctctgatg attcttcaag
      541 taactgctga aattctactt gatactcttt agcaataggt ccatatatat ccaattgaca
      601 gagattgctc ttattttttg tattgattgc ctcgattgcc tctatagcat caccaattcc
      661 tttttcttta ataactctcg aaaatgtaca gaatttgaaa ggaatagaat aatcatctgc
      721 ctttacctta gaaatatcta tcgggtccat tcgacgaaaa ttgggaatta tctcaacatt
      781 cacaatacct ctttgaatta gttcatcttt caataat
//
LOCUS       DASGCC010000202          795 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.203, whole genome shotgun sequence.
ACCESSION   DASGCC010000202 DASGCC010000000
VERSION     DASGCC010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.203"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            110..>795
                     /locus_tag="U1404_001903"
     CDS             110..>795
                     /locus_tag="U1404_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5348798.1"
                     /translation="MKAAYITIHDKIKEQIDNGIWKIGQRLPSERDLADEFGVSRMTL
                     RQGITLLVEEGILQRKIGSGTYVASTRVQEKMRGTTSFTELVQLQGKTPSSKLLSYTR
                     TKPNEKEVEQLGLSRGEYVIRMERVRYADNVPVVYEVASIPERLIKNVPKEDVTNHFF
                     KTLMDNGYRIGTSKQTIFARLANEKVAQYLQISKNQAILALKQVSYLEDGQAFEFVNS
                     QYVGERFEFY"
BASE COUNT          265 a          145 c          166 g          219 t
ORIGIN      
        1 taatctgact tcattgtttg cctaggagaa ttttaccaat agagtgtggc ctgaattagc
       61 caaacgcctt tatttttggt aaactagaaa gaagagaaag gctagataaa tgaaagcagc
      121 atatatcaca attcacgata aaattaagga acaaatcgat aacggaatct ggaaaattgg
      181 tcaacgttta ccaagtgaac gcgatttagc agatgaattt ggtgtttctc gtatgacgct
      241 ccgtcaagga atcacacttt tagtggaaga aggtattcta caacgcaaga ttggttccgg
      301 tacttatgtc gccagtacac gggttcaaga aaagatgcga ggcacgactt cctttactga
      361 attagtacaa ctccaaggaa agacgccaag cagcaaatta ttgtcctata cgcgaaccaa
      421 acctaatgaa aaagaagttg aacaattagg tttatcccgt ggcgagtatg ttattcgaat
      481 ggagcgggtc cgctatgcag ataatgttcc cgtcgtgtat gaggttgcca gcattcctga
      541 acgcttgata aaaaatgtcc caaaagaaga tgttaccaac catttcttta aaacacttat
      601 ggacaatggt tatcgaattg gaacgagcaa acaaaccatt tttgcgcgtt tagccaacga
      661 aaaagtggct caatatttac aaatttctaa aaaccaggct attctcgcac taaaacaggt
      721 atcttatctc gaggatggtc aagcatttga atttgtaaat agtcagtatg ttggggaacg
      781 tttcgaattc tattt
//
LOCUS       DASGCC010000203          791 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.204, whole genome shotgun sequence.
ACCESSION   DASGCC010000203 DASGCC010000000
VERSION     DASGCC010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.204"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..>791)
                     /locus_tag="U1404_001904"
     CDS             complement(<1..>791)
                     /locus_tag="U1404_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348799.1"
                     /translation="KIFVESLNSAFDLSIFSPLSIVLPDGEEVLSKNFYNRSHSFDQR
                     LDVLVKVLDEISDQYSQLSTDVRYFLLYYKMLQGKIKFVESQSHMVDGLTKYPYLDIS
                     DPEMKIIRSQIRSMEVALSMSEGMNYLYSKRFWNNISQLTDCEVYSIVMDRSNAIDLN
                     EIKGTVYSALKYYRDMLQNIEPFNEKLYVLTSILTYSYKRLLELMNHDLQYTISGRSI
                     VRSCIENYVMTKYLIAEEANHKNIWEEYQYYGIGGYKLVSERFIE"
BASE COUNT          269 a          142 c          102 g          278 t
ORIGIN      
        1 ttctctataa agcgttcgga aactaattta taaccaccaa taccataata ttggtattcc
       61 tcccaaatgt ttttatggtt tgcttcctca gcaattaaat attttgtcat aacatagttc
      121 tcaatgcatg accttactat agaacgccct gaaatcgtat attgcaaatc atgattcatc
      181 aactctagta accgcttata agaataggtt aggatactag ttaaaacata aagcttctcg
      241 ttaaaaggct ctatattttg aagcatgtct ctgtaatatt ttaatgctga atatactgta
      301 ccttttatct cattcaaatc tatagcatta cttctatcca taacaattga atatacctca
      361 caatcagtta gttgactaat attattccaa aatcttttac tataaagata attcatacct
      421 tcagacattg ataaagcaac ctccattgag cgaatctggg aacgaataat tttcatttct
      481 ggatctgata tatctaagta agggtattta gttaatccgt ctaccatgtg tgactgcgat
      541 tctacaaatt taatttttcc ttgtagcatc ttgtaataca gtaaaaaata tcttacatcc
      601 gttgacaact gactatattg gtcagatatt tcatctaata ctttaacaag tacatctagt
      661 ctttgatcaa aagaatgact cctgttgtaa aaatttttac tcagaacttc ttcgccatcc
      721 ggcaagacta ttgaaagtgg agaaaatatt gataagtcaa aagctgaatt taatgattca
      781 acaaaaattt t
//
LOCUS       DASGCC010000204          737 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.205, whole genome shotgun sequence.
ACCESSION   DASGCC010000204 DASGCC010000000
VERSION     DASGCC010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.205"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            10..>737
                     /locus_tag="U1404_001905"
     CDS             10..>737
                     /locus_tag="U1404_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5348800.1"
                     /translation="MPLIFILGIGLLAYPSVSDYWNSFHQSEAIMSYSDTVSDMTADQ
                     YKEIIDSARQYNQEKPLNWNVTASDIEAYNQELNFNKDGIMGYIEIPKIDVKLSIFHG
                     TDETVLETSIGHLEGTSLPVGGLGTHSVLSGHRGLPSARLFSDLDKLREGDIFTIHVL
                     NETLTYKVDQIRVVEPSDLSALTIEPQKDLLTLVTCTPYGINTHRLLVRGYRIENVNG
                     SALVTSDAIQIKAIFIAPFIATPIL"
BASE COUNT          217 a          143 c          144 g          233 t
ORIGIN      
        1 tcttttatca tgccattaat ttttatattg gggattggac tattggctta tccatcggtc
       61 agtgattact ggaattcctt ccaccaatca gaggccatca tgtcctattc tgacacagta
      121 tcagatatga cagctgacca atacaaagaa atcattgata gtgcgcgcca gtataatcaa
      181 gaaaaaccct taaactggaa tgtgactgca tccgacattg aagcctataa tcaggaattg
      241 aatttcaata aagatggcat catgggctat attgagattc ctaaaattga tgtcaagtta
      301 tctatatttc atgggacaga cgaaacggtt ttagagactt ctattggaca tctagaagga
      361 acatcgttgc ctgtaggagg tttgggaact catagtgtac tttcagggca tcgtgggctc
      421 ccatctgccc gtctgttttc tgatttagat aagttgagag aaggcgatat atttaccatt
      481 catgttctca atgaaacact aacttacaaa gtggaccaga ttcgagtggt tgagccatca
      541 gatttatcgg ctcttaccat agaacctcag aaagacttat tgaccttggt aacctgtaca
      601 ccctacggta ttaatacaca taggctatta gttcgtggct atcgtattga aaatgttaat
      661 ggtagtgctt tggttacctc tgatgctatc caaattaaag caatttttat tgctccattt
      721 atcgcaactc caattct
//
LOCUS       DASGCC010000205          733 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.206, whole genome shotgun sequence.
ACCESSION   DASGCC010000205 DASGCC010000000
VERSION     DASGCC010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.206"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(105..178)
                     /locus_tag="U1404_001906"
     tRNA            complement(105..178)
                     /locus_tag="U1404_001906"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(142..144),aa:Arg,seq:acg)
     gene            complement(197..280)
                     /locus_tag="U1404_001907"
     tRNA            complement(197..280)
                     /locus_tag="U1404_001907"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(244..246),aa:Leu,seq:taa)
     gene            complement(288..359)
                     /locus_tag="U1404_001908"
     tRNA            complement(288..359)
                     /locus_tag="U1404_001908"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(325..327),aa:Gly,seq:gcc)
     gene            complement(372..444)
                     /locus_tag="U1404_001909"
     tRNA            complement(372..444)
                     /locus_tag="U1404_001909"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(409..411),aa:Thr,seq:tgt)
     gene            complement(459..540)
                     /locus_tag="U1404_001910"
     tRNA            complement(459..540)
                     /locus_tag="U1404_001910"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(504..506),aa:Leu,seq:tag)
     gene            complement(544..616)
                     /locus_tag="U1404_001911"
     tRNA            complement(544..616)
                     /locus_tag="U1404_001911"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(581..583),aa:Lys,seq:ttt)
     gene            complement(662..733)
                     /locus_tag="U1404_001912"
     tRNA            complement(662..733)
                     /locus_tag="U1404_001912"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(699..701),aa:Asp,seq:gtc)
BASE COUNT          189 a          216 c          154 g          174 t
ORIGIN      
        1 gaacctgcga caccttggtc ccaaaccaag tactctacca agctgagcta cttcccgata
       61 ctattaaaaa taaagctccc ctaacgtctc cattaagcga gtgatgcacc ctagaggatt
      121 cgaacctcta accgcctgat tcgtagtcag gtactctatc cagttgagct aagggtgcta
      181 actattataa tcttcatgcc gaggaccgga atcgaaccgg tacgatgttg ccatcgcagg
      241 attttaagtc ctgtgcgtct gccagttccg ccaccccggc ctctcaaagc gaacgacggg
      301 attcgaaccc gcgaccccca ccttggcaag gtggtgttct accactgaac tacgttcgca
      361 atctttccta atgccggcta catgacttga acacgcgacc ctctgattac aaatcagatg
      421 ctctaccaac tgagctaagc cggcctattt ctattctatg cgggttaagg gacttgaacc
      481 cccacgcccg aaagcgccag atcctaaatc tggtgcgtct gccaattccg ccaaacccgc
      541 atatgactcg tgctgggctc gaaccagcga cccattgatt aaaagtcaat tgctctacca
      601 actgagctaa cgagtcttta cttaattata ttacttgaaa catatgattg attcgtttca
      661 acggtcccga cgggaatcga acccgcgatc ttcgccgtga cagggcgacg tgataaccgc
      721 tacactacgg gac
//
LOCUS       DASGCC010000206          650 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.207, whole genome shotgun sequence.
ACCESSION   DASGCC010000206 DASGCC010000000
VERSION     DASGCC010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.207"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(1..650)
                     /locus_tag="U1404_001913"
                     /pseudo
     CDS             complement(1..650)
                     /locus_tag="U1404_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS982 family transposase"
BASE COUNT          197 a          124 c          144 g          185 t
ORIGIN      
        1 actttccaat tgttatgttc ttcagcctct gccatgtttt gtcgaaatgg cgtccataga
       61 tggtaacctt gttgttctaa gtccttcttg agttcactgc tcaggtagcc taaatcacct
      121 aggataaccg attgcttaca cccttctaat agttcataaa ccaccttgat atcgtgaaca
      181 gaggcaggtg tgacaacata gttcagaata aaaccagata aggtcaccag catatgaacc
      241 ttgaagccgt agaaccaaag atgtttagag gcgttgtagc caatatcggc taatccttta
      301 aaaatggtag ctctgtgatt gcgaacaggt tggcaaagga aaactatcta taatggctag
      361 tttatcagat ggaagcattt cactcatagc ttttcggatt aattggacga gccaaatcaa
      421 ttgttttgac cgacgattga aacggcttct ttctagtaac tgaccacaag gaaagaggtg
      481 gcagatgcta tagaaatgac gctgtgacgt tatgcctagt tcggcctgta acaagagcaa
      541 gacaaggagt gagtcatctg aaactttggc taagccaaca ttacgccgat gtttaaagga
      601 atctggacaa tagttttggt agaagtgatg acaaatttgt gataattggc
//
LOCUS       DASGCC010000207          649 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.208, whole genome shotgun sequence.
ACCESSION   DASGCC010000207 DASGCC010000000
VERSION     DASGCC010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.208"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            1..649
                     /locus_tag="U1404_001914"
                     /pseudo
     CDS             1..649
                     /locus_tag="U1404_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611513.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          229 a          116 c          160 g          144 t
ORIGIN      
        1 cgaggaactc tcccaaactg gatagcacaa tacaagaaaa acgggtatac tattcttgag
       61 aaaacaagag ggaggccacc aaagatgggg cgtaaaccaa agaaaacctg ggaagagatg
      121 acggagttag agcgacttca ggaggaaaat gaacggctta gaacggagaa tgtctatcta
      181 aaaaagttga gagcgcttcg tttaagggac gaagccagag aacaagaaag gctcaaacag
      241 ttagagagat ggtcgcagaa ggatttcgac tagatgtact actgacgatt gctcaattag
      301 ttccttctac ctatcattat caagtcaaac aactggacaa accagataaa gataaggact
      361 taaaagctga aattcaagcc atttatgatg aaaataaggg aaattatggc taccgtcgca
      421 ttcaccttga gctaagaaat cgtggatttt ctgtcaacca caagaaagta caacggctga
      481 tgaaagagtt aggtttgact gctcgtattc gtagacgcaa gagatacaag tcttacaagg
      541 gtgatgtggg caagaaagct cctaatctca ttgagagagc ctttgaaggg gctaagcctt
      601 ttgagaagtg ctatacagat gtgactgagt tcgctctgcc aaattgtgc
//
LOCUS       DASGCC010000208          648 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.209, whole genome shotgun sequence.
ACCESSION   DASGCC010000208 DASGCC010000000
VERSION     DASGCC010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.209"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..358)
                     /locus_tag="U1404_001915"
     CDS             complement(<1..358)
                     /locus_tag="U1404_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348801.1"
                     /translation="MLDKLRKSQNEYLELLRRVRGDLDLGDVAYHLDKIRIFWFRKQK
                     LLEVCSQHLFNNLDTYFYTAVSKFNVDNLDKNILFALGSYQIFDDPILSYLEVVEKSN
                     ALHDMKDYITKLKERII"
     gene            complement(352..>648)
                     /locus_tag="U1404_001916"
     CDS             complement(352..>648)
                     /locus_tag="U1404_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348802.1"
                     /translation="GNGNIRQKFKQVGEDDLYKFYYDYDSQFEHGLWGAIRESSVLKC
                     TSAGHQFHGIPDIDDVQELPDISHDMVMILTKHLSVINEVFPIPSERRDGDRLC"
BASE COUNT          206 a          128 c           75 g          239 t
ORIGIN      
        1 ctataatcct ttcttttaat tttgtgatgt aatctttcat atcatgcaat gcattacttt
       61 tttctaccac ctccaagtag gatagtattg gatcatcaaa tatttgataa cttcccaatg
      121 caaaaagaat gttcttatct aagttatcaa cgttaaattt tgatactgca gtgtaaaaat
      181 atgtatccaa gttattaaaa aggtgttgac tacacacttc tagtaatttt tgttttctaa
      241 accaaaaaat tctaatttta tctaaatgat aagctacatc tcctaagtct aagtcgcctc
      301 taactctcct cagcaactct aaatactcat tttgtgattt cctaagttta tctagcataa
      361 tctatcacca tctcttcgct cacttggaat aggaaatact tcgttaatga cagataaatg
      421 ctttgttaat atcattacca tgtcatgact aatgtcaggt aattcctgta catcatctat
      481 atcaggaatt ccatgaaatt gatgcccagc tgatgtacat ttcaaaacag aactctctct
      541 aatggctccc caaagtccat gttcaaattg agaatcataa tcatagtaaa atttatataa
      601 atcgtcttcc cctacttgct taaatttttg tcttatattg ccatttcc
//
LOCUS       DASGCC010000209          641 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.210, whole genome shotgun sequence.
ACCESSION   DASGCC010000209 DASGCC010000000
VERSION     DASGCC010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.210"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..>641)
                     /locus_tag="U1404_001917"
     CDS             complement(<1..>641)
                     /locus_tag="U1404_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HEM5348803.1"
                     /translation="HNVGIYSFSTKVYNILKHLINAAIVVTIPRLTAIYGRNKEDYKN
                     QLSEIFNILIIFLIPISVGMVMMSDSIILLIGGEEYLTGESSLRLLSISLIFALLSSV
                     YVNGMLIISRQEKLTLLGTILSAVINVVGNFLLIPKIGMVAAAITTVLAEGINFIIQR
                     YFSKKYVLNTYFFEKTSIICAILGGITTFLVCYYVNGIFLGTTITIVVIRIML"
BASE COUNT          248 a          112 c           83 g          198 t
ORIGIN      
        1 caagcatgat tcgaattaca acaatcgtaa tggttgtccc aagaaatata ccatttacat
       61 agtaacaaac taaaaatgtg gttatacctc ctaatatggc acaaatgatt gaagtttttt
      121 caaaaaaata cgtattcaag acatatttct ttgaaaaata gcgttgtata ataaaattaa
      181 ttccctcagc aagtactgtt gtaatcgctg ctgcaaccat acctattttg ggtattaata
      241 agaaatttcc aaccacattg ataacagcag ataaaatagt tcctaacaat gttagctttt
      301 cttgacgact tatgattagc attccattca cgtaaacaga agaaagtaga gcaaaaatta
      361 gagaaatgct caataatcta agcgaacttt ctcctgttaa atattcctca ccaccaataa
      421 gtaaaataat agagtcactc atcataacca taccaacaga tattggtatc aaaaaaataa
      481 ttagaatatt aaaaatttca ctgagctggt tcttataatc ttctttgttt ctcccataaa
      541 tagccgtcaa acgaggaatc gtcactacaa ttgcagcatt aatcaaatgt tttaatatat
      601 tgtaaacttt agtagaaaag ctataaattc caacattatg g
//
LOCUS       DASGCC010000210          636 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.211, whole genome shotgun sequence.
ACCESSION   DASGCC010000210 DASGCC010000000
VERSION     DASGCC010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.211"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            245..592
                     /gene="rplS"
                     /locus_tag="U1404_001918"
     CDS             245..592
                     /gene="rplS"
                     /locus_tag="U1404_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEM5348804.1"
                     /translation="MNPLIQSLTEGQLRTDIPSFRPGDTVRVHAKVVEGNRERIQIFE
                     GVVISRKGQGISEMYTVRKISGGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRA
                     LQGKAARIKEIRR"
BASE COUNT          192 a          119 c          137 g          188 t
ORIGIN      
        1 cagcctcttt tcatttttct ccaataggaa tctgtattat taacactctt cgaaaatcaa
       61 actcagacct tgttgactta acttgtaaaa gaagcggtgt gattgaccat gataaattta
      121 tcaaaatgct ttacataggt gattacttgg tgtataatat agtctgtgtg taatggacgc
      181 acaaaaatac agtttatccg ctgggtttaa aagcacctat gattgacaaa gataggagaa
      241 taaaatgaat ccattgatcc aaagtttgac agaaggtcaa cttcgtactg acatcccttc
      301 attccgtcct ggtgacactg tgcgtgttca cgctaaggtt gtcgaaggta accgcgaacg
      361 tatccagatt ttcgagggtg ttgttatctc tcgtaaaggt caaggcatct cagaaatgta
      421 cactgtacgt aaaatctctg gtggtgtagg tgttgaacgt acattcccaa tccacactcc
      481 acgtgttgat aagattgaag tagtacgtta cggtaaagta cgtcgtgcta aattgtacta
      541 cctacgtgca ttgcaaggta aagcagcacg tatcaaagaa atccgtcgtt aagatagttc
      601 tacagactat tttggtcgga gaatgggagg cagcga
//
LOCUS       DASGCC010000211          603 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.212, whole genome shotgun sequence.
ACCESSION   DASGCC010000211 DASGCC010000000
VERSION     DASGCC010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.212"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            60..>603
                     /locus_tag="U1404_001919"
     CDS             60..>603
                     /locus_tag="U1404_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSsu7 family transposase"
                     /protein_id="HEM5348805.1"
                     /translation="MLSKYVGRQTSSIENDITKTRNHSRQRGNIMRVVFGIDVSKVSS
                     EVAILVNGEKVHNYTMSNDAIGFSRLLGDLKTVHKPEIIFEATGVYSRRLQSFLDEHG
                     YAYTRLNPLEAKKQLDSLRVRKTDQIDAEKLAQSQFVLNRKTTYVQEEIYQNLRDLSR
                     FYQNLTEDIVRAKNRLHKALQ"
BASE COUNT          197 a          130 c          130 g          146 t
ORIGIN      
        1 agggcttttt gacgctagac gtcgcaacaa aaactggcaa gacacctgtt ttagaaagaa
       61 tgttatcaaa gtatgtggga cgccagacgt cgagtattga aaatgacatc actaaaacaa
      121 ggaatcattc aagacaaaga ggtaatatca tgcgagtagt atttgggatt gacgtgagta
      181 aagtaagttc agaagtagcc attctagtca acggcgagaa ggttcataac tacaccatgt
      241 ccaatgatgc cattggcttt tctcggctac ttggcgattt gaaaaccgtc cacaagccag
      301 aaatcatctt tgaagcaaca ggcgtctatt ctcgtcgtct tcaatctttt ctggatgaac
      361 atggctacgc ttatacacga ctcaatccct tagaagccaa gaagcaactg gatagcttgc
      421 gtgtgagaaa aacagatcaa attgacgccg aaaaactagc tcaatctcag tttgtactga
      481 atcgtaaaac gacgtatgtc caagaagaaa tctaccaaaa cttgcgggat ctcagccgtt
      541 tctatcagaa tctgaccgag gacatcgttc gagctaaaaa ccgcctgcac aaggccttac
      601 agg
//
LOCUS       DASGCC010000212          596 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.213, whole genome shotgun sequence.
ACCESSION   DASGCC010000212 DASGCC010000000
VERSION     DASGCC010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.213"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(270..410)
                     /locus_tag="U1404_001920"
     CDS             complement(270..410)
                     /locus_tag="U1404_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348806.1"
                     /translation="MIGHAINGIEGAMFAMLYEADRTYYRCQHCGYRFSRKENRFISN
                     IE"
BASE COUNT          195 a           94 c          102 g          205 t
ORIGIN      
        1 cataacgcat tggtttcctc ctggataaat aaaactatta tcccaagaga atagacaaaa
       61 aagaagagcc aagcagctct tctaaatcat tcaattttag ctatcaatca ttaagtattt
      121 tggttcaaat tggttcaact gatatggaga gttatccatt ttagtcaata tttatacagg
      181 tttataagca attattctgt atattcctac atagttacgg ataagattgc ataaaatatc
      241 ggtgtatatt tctattaaaa ttagggaggt tattcgatgt tagaaataaa acgattctcc
      301 tttctagaaa atcggtaacc gcaatgttga caacgataat aagtccgatc agcttcatag
      361 agcattgcaa acatagctcc ctctatgcca ttgattgcat gaccaatcat accggcttta
      421 cgagaatatc ttttttgtgt tggaacgtaa gtttgtattg acttacattt tggacatttg
      481 aacgcttgtt tagtgtccat attattagga tggcatctgc gatagatgct ataagagatt
      541 attagtacta tgagaatagt cggaccgata tattctatta aggtattcat aatctt
//
LOCUS       DASGCC010000213          558 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.214, whole genome shotgun sequence.
ACCESSION   DASGCC010000213 DASGCC010000000
VERSION     DASGCC010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.214"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            176..>558
                     /locus_tag="U1404_001921"
     CDS             176..>558
                     /locus_tag="U1404_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348807.1"
                     /translation="MKSEVLSQAYQDYITTGQVSNIPHINLEELKNNSNLLLKEHSKV
                     KKEKQEYDKLISEQISQIVTLKKPLLELILPHKNFHPFELGHREIRYYAAPIPIENTV
                     YIDFISNTYGKSKSSFFSDFAYVVSV"
BASE COUNT          230 a           85 c           81 g          162 t
ORIGIN      
        1 actatagaga aaataattta gagaaaaggt attcaataag accaagtcaa gaaattatct
       61 cacaattaaa agagaaactt accacatatc gtcaactttc aagaggacac agttatactc
      121 tggagggaat aaaagaaaat ataaaaaaat tattcgtaag tctagctcca aacgtttgaa
      181 atcggaagta ttatcacaag cttatcaaga ctatattaca actggtcaag ttagtaatat
      241 acctcatatt aatttggagg aattaaaaaa taatagtaat ttgttgctaa aagaacactc
      301 caaagtaaaa aaagaaaaac aagaatatga taaattgata agcgagcaga tttctcaaat
      361 tgttacgtta aaaaaaccat tgcttgaact tattttaccc cacaaaaact ttcatccatt
      421 cgaactaggt catcgagaaa taagatacta tgcggcgcca attcctatcg aaaacacggt
      481 atatatagat tttatttcta atacatatgg taaaagtaaa agctcattct tttctgattt
      541 tgcttatgtc gtatcggt
//
LOCUS       DASGCC010000214          555 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.215, whole genome shotgun sequence.
ACCESSION   DASGCC010000214 DASGCC010000000
VERSION     DASGCC010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.215"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(118..435)
                     /locus_tag="U1404_001922"
     CDS             complement(118..435)
                     /locus_tag="U1404_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348808.1"
                     /translation="MELVLPNNYVALEQEEMMYLDGGDWNTFKNNIKGLAASSAGFRD
                     AARQVGLWGAIWSARVYSYSYVVSVLAPILGSVTAANFVLGAIGVATVGAVSYALWNY
                     KYY"
BASE COUNT          197 a          122 c           72 g          164 t
ORIGIN      
        1 aataacctgt taatggttct agattaaatg ccagagaaac aaataataaa tgtatctcta
       61 gccataatcc gtacagcgaa accattaata aaaatcttaa aaaaatgagc atattaatca
      121 ataatattta tagttccata gagcataact aacggctcct actgtagcta cgccaatagc
      181 tcctaaaaca aaattagccg cagttactga accgagtatt ggtgccaaaa cagaaactac
      241 ataagaatag ctatacactc tcgcagacca aattgccccc cataagccta cttgtcgagc
      301 agcatctcta aatcctgctg aagaagctgc caaacctttt atattgtttt taaatgtatt
      361 ccaatctccc ccatcaagat acatcatttc ttcttgttca agagccacat aattatttgg
      421 tagtactaat tccataaaaa ttctccttta aaaatcatgg ttagacgcaa tcctctaact
      481 ggatataatc aacatttctc attctttacc tagatagcag aaggaccttt catctacact
      541 gttgggattt atcta
//
LOCUS       DASGCC010000215          555 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.216, whole genome shotgun sequence.
ACCESSION   DASGCC010000215 DASGCC010000000
VERSION     DASGCC010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.216"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(24..338)
                     /locus_tag="U1404_001923"
     CDS             complement(24..338)
                     /locus_tag="U1404_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348809.1"
                     /translation="MKQLVTKRSYKIGLSAMALVLLMTTAGGATAHASTGTYSVETRG
                     DAEVYRLLETPAGSFTQGNVVLEPVNNSTTKPSETKSWFDSFWSSVKTFWEAICRGVG
                     WC"
BASE COUNT          201 a          117 c           77 g          160 t
ORIGIN      
        1 actctaaata gtaaacattc tacttaacac catccaactc cacgacagat tgcttcccaa
       61 aatgttttta cactactcca aaaagaatca aaccatgatt tggtttcaga tggtttagtt
      121 gtagaattat tcacaggttc caaaactacg ttcccctgtg taaaagaccc cgccggagtt
      181 tccaacagcc tatacacttc ggcatcacct cgagtttcga cactataggt acccgtactt
      241 gcatgtgcag tggcaccacc tgcagtggtc attagcaaga ccaaagccat agcactcaaa
      301 ccaattttat aactacgttt tgttacaagt tgtttcattg ttgaaatatc tcctttatac
      361 gatattcgtc tctacaaatg atagtatagc acaaacagac aactcaaatt ccaactttag
      421 aaaaaggtta gataaaaaac tataaaactc caagatatgc atatattaat acaagaacaa
      481 aaatacacat gcaatattat atttatggtt caaaaaactt gtatcgaata attgtggtaa
      541 taaagaaaaa atgtt
//
LOCUS       DASGCC010000216          541 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.217, whole genome shotgun sequence.
ACCESSION   DASGCC010000216 DASGCC010000000
VERSION     DASGCC010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.217"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(1..250)
                     /gene="tnpA"
                     /locus_tag="U1404_001924"
                     /pseudo
     CDS             complement(1..250)
                     /gene="tnpA"
                     /locus_tag="U1404_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT          162 a          112 c           92 g          175 t
ORIGIN      
        1 ccttttaaat atcccataaa gcttgataca cttaatcgcg gaggaatact gactaacata
       61 tgaacatgat ccggcatcag atgtccttcg ataatttcta cgcctttata actacacaaa
      121 tgtcggaata tttctcccaa actacttcga tattgattat agatgatttt tcgtctatac
      181 ttaggtgtga agacaatgtg gtagaacaca accactttgt atgtgataaa ctatgtgcct
      241 tttgtgccat acttttctcc tctcgcttta caattggctt gaacaccttt attgtatcgc
      301 gtttagagtt ttttggtata accttcgtcg cgcacccgca tagcgggtgg tttatttgtc
      361 acgcacctta cggagcgcga cggactaaaa gtcacataaa tacaataagc aacgggggaa
      421 cctcgttgct tatttctatc tagaatacta ccattctagt ctcaaactat taaaggatta
      481 tctatagcag gttatagcaa ctataggaac tgattcactt aaaaaactaa ttcgttgaaa
      541 a
//
LOCUS       DASGCC010000217          529 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.218, whole genome shotgun sequence.
ACCESSION   DASGCC010000217 DASGCC010000000
VERSION     DASGCC010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.218"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..>529
                     /locus_tag="U1404_001925"
     CDS             <1..>529
                     /locus_tag="U1404_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS110-like element ISSsu7 family transposase"
                     /protein_id="HEM5348810.1"
                     /translation="RVAYLAEKLIALANQSYCAVKKTSPMLEEVRYYAKELFRLSEQR
                     QTILDEMVELAQPLPEYDILLSIPGIAETTATSIIGELGDIRRFQSANQINAFIGIDL
                     RHYESGNFLAKEHITKRGNPYARKILFKCIHNIASASNTNPCHIADFYEKRKRQSQTT
                     STKPHTIASIHRLIRT"
BASE COUNT          161 a          123 c          104 g          141 t
ORIGIN      
        1 agcgtgtggc gtatttagct gagaagttga tagcactagc taatcaatcg tattgtgctg
       61 tcaagaaaac ctctccaatg ctggaagagg tccgttacta tgcaaaagaa ttgtttcggc
      121 tttctgaaca gagacaaact atcctagacg aaatggtgga actagctcag ccattacctg
      181 aatatgacat tctgctctct attcctggaa tagctgagac tactgcaaca agtattattg
      241 gtgaactggg agatattcgc cgttttcagt cagccaatca aatcaatgcc tttatcggta
      301 ttgacctgag acactatgaa tctggtaact tcctcgctaa ggaacacatt accaagcgtg
      361 gtaatcccta cgctagaaag attctgttca agtgtatcca caatatcgct tcagctagta
      421 acaccaatcc ttgccatatc gcagactttt atgagaaacg aaaaagacaa tcgcaaacga
      481 cttcaacgaa gccgcacacg attgcctcca tacatcgtct cattcggac
//
LOCUS       DASGCC010000218          529 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.219, whole genome shotgun sequence.
ACCESSION   DASGCC010000218 DASGCC010000000
VERSION     DASGCC010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.219"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..>529
                     /locus_tag="U1404_001926"
     CDS             <1..>529
                     /locus_tag="U1404_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2971 domain-containing protein"
                     /protein_id="HEM5348811.1"
                     /translation="NYKTLRFKSLLYVDDPLEPSTSDFGNLGGFKYVSCWTDTPNSIP
                     QWTMYSDNMTGVCIGISFDKETDVFLTEKFSLSESSEPIDMVNALHPLKSGLLVTNNK
                     YVPSLEQIRYTDDVSLITPRVVSSDDKFTTINLASNGIYKTTDWSFQNEQRFSFQIFP
                     LPIDLVLELMNANKG"
BASE COUNT          181 a           71 c           85 g          192 t
ORIGIN      
        1 taaattataa aacattgaga ttcaaaagtt tactttatgt tgacgatcca ttagaacctt
       61 caacttcaga ctttggtaat ctaggtggat ttaagtatgt gtcttgttgg actgatactc
      121 ctaatagtat tccacaatgg acaatgtatt ctgataatat gacaggagtg tgtataggaa
      181 ttagttttga caaagaaact gatgtctttt taacggaaaa attttcttta tctgaatctt
      241 ctgaaccaat tgatatggta aatgcattac atcctttaaa atcaggctta ttagttacaa
      301 ataataaata tgtgccttct ttggaacaaa taaggtatac tgatgatgtt tcattgatca
      361 ctcctcgagt agtttcttca gatgataaat tcacaactat taatttagct tcaaatggta
      421 tctataagac aactgattgg agttttcaaa atgagcaaag attttctttt caaatttttc
      481 cattaccaat agatttagtt ttggaattaa tgaatgcaaa taaaggaga
//
LOCUS       DASGCC010000219          524 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.220, whole genome shotgun sequence.
ACCESSION   DASGCC010000219 DASGCC010000000
VERSION     DASGCC010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.220"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..>524)
                     /locus_tag="U1404_001927"
     CDS             complement(<1..>524)
                     /locus_tag="U1404_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5348812.1"
                     /translation="ISIGLIGSFLLYTHLIQNELGSTKNDGTVEIIAEQPNQVIDSIQ
                     INGRYIHSSEIIENQWGINDADLIPNFSSLGEENSLVIKSSSSVRTLSFEYFVSENPT
                     IVKIKVGGQLVESIDTSTGDKYKNLAFIELPYTLRITKDNQFWYLHLIVLALGLTCFI
                     LNGATWRIKRRDIH"
BASE COUNT          163 a           81 c           90 g          190 t
ORIGIN      
        1 atggatatct cttcttttga ttctccatgt tgctccattt aagataaagc atgttagacc
       61 taaagcaagg actattaagt ggaggtacca aaattgatta tctttagtta tccgtaaagt
      121 atagggaagc tcaataaagg ctaaattttt atatttatct ccagttgatg tgtcaatgga
      181 ttcaaccaat tgtccaccga ctttaatttt tacaatagtc ggattttcac taacaaagta
      241 ttcaaatgat aaggttctta cagaagagga agatttaatt acgagtgaat tttcctcacc
      301 tagagaagag aaattaggga ttaaatcagc atcattgatt ccccattggt tttctataat
      361 ttctgatgaa tgaatatagc gtccatttat ttggatgctg tcgattactt ggtttggttg
      421 ttctgctata atttctacag ttccatcatt tttcgtagaa cctaattcgt tttgtattag
      481 atgtgtatac agtaaaaaac ttccaatcaa tccgatggag atta
//
LOCUS       DASGCC010000220          520 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.221, whole genome shotgun sequence.
ACCESSION   DASGCC010000220 DASGCC010000000
VERSION     DASGCC010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.221"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
BASE COUNT          194 a           63 c          105 g          158 t
ORIGIN      
        1 taccatgctt tgtagcattc gattgttgat attaattgct acgctagaag ctacatttaa
       61 tccgtctgtg atttgaaaaa gattataaaa taatagagga gcaccacggc tgtcaatcaa
      121 aagttggtta cttataccaa taaatactga agcggataga attaataggc tggcaaatcg
      181 taagttcgtt gtaaagaaca gtattaggta gaggactccg ataatgatta gattgttcca
      241 aagactgttt gaggaaagag tagagaattg tgagtagcta ttttcaataa taaataatga
      301 aaaaatggga actagaagat aaatcactga tagactaatc gttttgaagg ctttagagat
      361 atgacctcgg agttgtttgt atcccaaaag accaaaaaat atcagaaaag ttagtgcgac
      421 taatagttgt tgagtttcca ttttattaaa gttcgaatta aatagcacta attcattgcg
      481 atataaacgt ggaaatgtaa aagtagtgaa tatatattga
//
LOCUS       DASGCC010000221          467 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.222, whole genome shotgun sequence.
ACCESSION   DASGCC010000221 DASGCC010000000
VERSION     DASGCC010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.222"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..313)
                     /locus_tag="U1404_001928"
     CDS             complement(<1..313)
                     /locus_tag="U1404_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5348813.1"
                     /translation="MKRIVTKRSYKVGLCAMALALLMSTAGGVTAGAQDYHVESSGEL
                     KPMSEGVFMKLESSSNFIENEGIVVKSISNQNTNPNNLNESWYWKFWKKVKLFFKRFR
                     EG"
BASE COUNT          166 a           93 c           58 g          150 t
ORIGIN      
        1 aaccttcacg aaatcttttg aaaaacagtt tgactttctt ccaaaatttc caataccaag
       61 actcgttcaa attatttgga ttagtatttt gattactaat agatttcacc acgattcctt
      121 cattttcaat gaaattagat gaagattcca atttcataaa cactccttcg ctcattggtt
      181 ttaattcgcc tgatgattcg acatgatagt cttgtgcacc tgcagttacg ccacctgcag
      241 tgctcatcaa cagagcaaga gccatagcac acagaccaac tttataacta cgttttgtta
      301 caatacgttt catttttgaa atgtctcctt tatacaatat tcgccctttt ctagacaatg
      361 tagtgccagt atagcacaaa aaaataacgt aaattccaac tttagagaaa gattagataa
      421 aaaaccatta aattccaaaa aataaaaata ttaatataaa aatcagg
//
LOCUS       DASGCC010000222          447 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.223, whole genome shotgun sequence.
ACCESSION   DASGCC010000222 DASGCC010000000
VERSION     DASGCC010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.223"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..337
                     /locus_tag="U1404_001929"
     CDS             <1..337
                     /locus_tag="U1404_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEM5348814.1"
                     /translation="FRDLKYSIGLTHFHAKKKEGILQEIYARFINFNVCKWLTSHVAI
                     KTSKLKQTYKICFSDAVYACRKFLRNKLTSFQLETYIAKHLSIIRPNRTFQRKIKSKA
                     PVSFTYRVT"
BASE COUNT          156 a           92 c           65 g          134 t
ORIGIN      
        1 ttttcgtgac ctaaaataca gtatcggtct gactcatttt catgcaaaaa agaaggaagg
       61 gattctccaa gaaatctacg ctcgctttat caattttaat gtttgtaaat ggctaacctc
      121 acacgttgct attaaaacat caaagttaaa acagacttat aaaatttgtt tttcagacgc
      181 tgtttatgcc tgtcgaaaat ttcttagaaa caaactcact tccttccaat tagaaaccta
      241 cattgccaag catttatcca tcatccgacc caatcgaacg ttccaaagaa agataaaaag
      301 caaggcacct gtaagcttca cttatagagt aacataatag ttgaaaaata gggataaaaa
      361 acctcctttt tgtgcgccct aaatacaaaa actattcccg ttttgtcatg aactgctcag
      421 acgagaatag tttctttagc tgcttaa
//
LOCUS       DASGCC010000223          440 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.224, whole genome shotgun sequence.
ACCESSION   DASGCC010000223 DASGCC010000000
VERSION     DASGCC010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.224"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            20..>440
                     /locus_tag="U1404_001930"
     CDS             20..>440
                     /locus_tag="U1404_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5348815.1"
                     /translation="MIAFVILHYQAMEETISCVETIKNMVKEEKKIVIVDNASPNKTG
                     INLREKYSQDSEVIVLLSEKNLGFAQGNNIGYKEARKFSPEFIVVMNNDVFLTQENFY
                     SLLQESHKRYNFDVLGPDIYSTKTNLHQNPQRLSNYSL"
BASE COUNT          164 a           57 c           78 g          141 t
ORIGIN      
        1 ttgaggagaa taagagaaaa tgatagcatt tgtgatatta cattatcagg cgatggaaga
       61 gacaatttca tgtgttgaaa ctataaaaaa catggtcaaa gaagaaaaga agatagttat
      121 tgttgataat gcatcgccaa ataaaacagg cattaatttg agagaaaaat atagtcaaga
      181 tagtgaagtt atagttctgt tatccgaaaa aaatcttggt tttgcccaag ggaacaacat
      241 tggttataag gaagcgcgta aattttcacc agagtttatt gtcgtgatga ataacgatgt
      301 gtttttaaca caagaaaatt tttattctct tttacaagaa tcacataaac gttataattt
      361 tgatgttttg ggaccagata tttattctac taagactaat ttgcatcaaa atcctcaacg
      421 tctatctaac tattcccttt
//
LOCUS       DASGCC010000224          420 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.225, whole genome shotgun sequence.
ACCESSION   DASGCC010000224 DASGCC010000000
VERSION     DASGCC010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.225"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(<1..399)
                     /locus_tag="U1404_001931"
     CDS             complement(<1..399)
                     /locus_tag="U1404_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEM5348816.1"
                     /translation="MKNRSLKINALLNVVRQGMTILFPFFTFPYISRILGSTEFGKYN
                     FSNSIVSYFALLAAFGMANFAVREGARIREDRQKFSAFASELFTFNIITTVVSIVLLI
                     IATLSSSKLSSYTVLIFIQSVSILLTTIGLD"
BASE COUNT          162 a           73 c           58 g          127 t
ORIGIN      
        1 atccagacca attgttgtca ataaaatact cacgctttgt ataaaaataa gtactgtata
       61 agaagataat ttggaacttg atagtgtagc tatgatcaaa agaacaatcg aaacaactgt
      121 tgttatgata ttaaatgtaa acaactctga agcaaaagct gaaaatttct gacgatcctc
      181 tctaatcctc gctccttctc gtacagcaaa atttgccatt ccaaatgctg ctaatagagc
      241 aaaataactc acaatagaat ttgaaaaatt atattttcca aattccgtcg atccaagaat
      301 tctagaaata tacggaaatg taaaaaaagg aaaaagaatt gtcattcctt gtcggacgac
      361 atttaacaag gcgtttatct ttaacgaacg atttttcata aattataatt cctcatctat
//
LOCUS       DASGCC010000225          390 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.226, whole genome shotgun sequence.
ACCESSION   DASGCC010000225 DASGCC010000000
VERSION     DASGCC010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.226"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(14..247)
                     /locus_tag="U1404_001932"
     CDS             complement(14..247)
                     /locus_tag="U1404_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEM5348817.1"
                     /translation="MELRSREGGDIWLFGGASLVQDCLEAGVIDHLIIGIIPTILGDG
                     IPLFASLLEEKKLLLVESTVTDGIAMLRYDIRR"
BASE COUNT          118 a          110 c           55 g          107 t
ORIGIN      
        1 tagctcgcct tttttacctt ctaatatcat aacgtaacat agcaattcca tctgtgacag
       61 tggactctac caagagcaat ttcttttctt ccaaaagtga ggcgaaaagt ggaataccgt
      121 cacccaaaat agtaggaata atcccaataa taaggtgatc aatcactccc gcctctaaac
      181 agtcctgaac cagacttgct ccaccaaaca accaaatatc tccaccttct ctagaacgaa
      241 gttccataat ctccccgatg atgtccctta cgaaacgcac attaccatag tccgtctgct
      301 cggtacgact cgcaacgata aattgctttt cctgatatcc ttcaatcatt tccaacggac
      361 aatcttctaa tgattttctc cccatcggga
//
LOCUS       DASGCC010000226          368 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.227, whole genome shotgun sequence.
ACCESSION   DASGCC010000226 DASGCC010000000
VERSION     DASGCC010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.227"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
BASE COUNT          117 a           74 c           69 g          108 t
ORIGIN      
        1 gaccgatttt atcagattca aagtcggcgt ggttcacaaa aagcaacaat tgcactcgca
       61 catcaattat taaaaatagc ttatatcctc ttaaaagagc agataacgta tcctgaattt
      121 ttagcacaga aaaagactac tagggacgag ctagtagcct aacataaaaa atttttcgct
      181 ttgattatat catagggagg gagtttttgc attcttttga gttttcgtat aagaactcga
      241 ctaagtcaaa aagagttcgt caacaagtcc ttatttccag ttgttgagct gaaacagtct
      301 attcccagac tgtttcactc ccacccccgc atagctccaa cagtcagagt agtgactgtt
      361 ggaggttg
//
LOCUS       DASGCC010000227          361 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.228, whole genome shotgun sequence.
ACCESSION   DASGCC010000227 DASGCC010000000
VERSION     DASGCC010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.228"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            30..>361
                     /locus_tag="U1404_001933"
     CDS             30..>361
                     /locus_tag="U1404_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5348818.1"
                     /translation="MEQLNLITNFLRIKDKNITITDEYDMGTHLELHGYLDYMAPKCP
                     ECKGQMAKYDYQKASKIPYLETAGYPLLIRLKKRRFKCKECGKMAVAETPLVKKNHQI
                     SVAVSQKIA"
BASE COUNT          128 a           76 c           62 g           95 t
ORIGIN      
        1 gctcaaacta tcattttaga aagactcata tggaacaact aaatcttatc acaaattttc
       61 tcagaattaa agacaaaaat atcactatca ctgatgaata tgatatggga actcacttag
      121 aactccacgg ttacttggat tacatggctc ctaaatgtcc agaatgcaag ggacaaatgg
      181 ctaagtacga ctaccagaaa gcatcaaaaa ttccctacct agaaactgct ggttatccac
      241 tccttatccg ccttaaaaag cgtcgtttca agtgtaaaga atgtgggaaa atggcggttg
      301 ctgaaactcc tcttgttaag aaaaaccatc aaatatctgt cgctgttagc cagaagatcg
      361 c
//
LOCUS       DASGCC010000228          290 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.229, whole genome shotgun sequence.
ACCESSION   DASGCC010000228 DASGCC010000000
VERSION     DASGCC010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.229"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            37..105
                     /locus_tag="U1404_001934"
                     /pseudo
     CDS             37..105
                     /locus_tag="U1404_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          116 a           58 c           43 g           73 t
ORIGIN      
        1 ttttattgag tatgaaaaac aacaaaactc acaatttcca acaccaaatc agaaacaact
       61 aacaatctca tcaaagtcat taaaagaaat gcctttggat tcaggaaaat gaaaactaga
      121 aaaacggatt ttgatgcttt gaacagtgaa aagctgagga gagctctttt cagctcatct
      181 cctaaaaaca agaaagagag aacgaatttc gtcctctcta ggtgttagct tttcatctac
      241 ccactacagt tgacaaagag ccaaaaaaaa gaacattgct actctcttac
//
LOCUS       DASGCC010000229          266 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.230, whole genome shotgun sequence.
ACCESSION   DASGCC010000229 DASGCC010000000
VERSION     DASGCC010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.230"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..168
                     /locus_tag="U1404_001935"
     CDS             <1..168
                     /locus_tag="U1404_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5348819.1"
                     /translation="TTTTEEPMTTITSEKTRKTALPSTGDKGNIWVAIAGFVALITIV
                     VMVYYRKSKNA"
BASE COUNT           94 a           40 c           53 g           79 t
ORIGIN      
        1 acaacgacta ccgaggagcc aatgactaca ataactagtg aaaaaactag aaaaacagct
       61 cttccatcta caggtgacaa aggtaatatt tgggttgcta tagctggttt tgttgctctt
      121 attacaatag ttgtaatggt atattaccgt aaatctaaga atgcttaatc atgaataagt
      181 ggctaagcta atgaatgata taagagagaa cattgcttct ctctttttta aaaggggcag
      241 atacagattc cagtattgta gagagt
//
LOCUS       DASGCC010000230          260 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.231, whole genome shotgun sequence.
ACCESSION   DASGCC010000230 DASGCC010000000
VERSION     DASGCC010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.231"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            60..260
                     /locus_tag="U1404_001936"
                     /pseudo
     CDS             60..260
                     /locus_tag="U1404_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
BASE COUNT           84 a           45 c           63 g           68 t
ORIGIN      
        1 gaactctttt gacgctagac gtcgcaacaa aaactggcaa ggcacctgtt ttaggaagaa
       61 tgttatcaaa gtatgtggga cgctagacgt cgagtattga aaatgacatc tctaaaacaa
      121 ggaatcattc aagacaaaga ggtaatatca tgcgtgcagt tttcgggatt gatgtgagta
      181 aggcaagttc agaagtggcc attctagtca atggtgagaa agttcatggc tataccatat
      241 ccaatgacgc cttaggcttt
//
LOCUS       DASGCC010000231          239 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.232, whole genome shotgun sequence.
ACCESSION   DASGCC010000231 DASGCC010000000
VERSION     DASGCC010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.232"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
BASE COUNT           79 a           43 c           34 g           83 t
ORIGIN      
        1 taacaatatg agaaaaaaat tgatagccac gattgcattt tgcgtagttt gtctatttct
       61 ctattcattt gttcctcaat ctttcggtac tccaactatt tttcagacac cttataaaac
      121 ctctgtgaaa tccgaatttg aagcattatt tcataaacat ggtattgatg tctcagaaaa
      181 tgatttttgg gctacatcat taaatggtcg aacacctcaa gacattctaa atgaaaaag
//
LOCUS       DASGCC010000232          239 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.233, whole genome shotgun sequence.
ACCESSION   DASGCC010000232 DASGCC010000000
VERSION     DASGCC010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.233"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            complement(73..>239)
                     /locus_tag="U1404_001937"
     CDS             complement(73..>239)
                     /locus_tag="U1404_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEM5348820.1"
                     /translation="VLKTEMFYGFEKNFKSLDQLEQAITEYIFYYNNKRIKTKLKGLS
                     PVQYRTKSFQ"
BASE COUNT           75 a           39 c           39 g           86 t
ORIGIN      
        1 tctttatcgt ttttctgtaa aaaaatacct gcagagctca tgtactgacc ccaaaaagtt
       61 agacaaaaaa tattattgaa aggatttagt tctgtactga acaggactaa gtccttttag
      121 ttttgtttta atgcgtttat tgttgtagta aaaaatatac tcggtgatag cttgctccag
      181 ttgatccaga gacttgaaat ttttctcaaa tccgtaaaac atttctgttt tcaagacgc
//
LOCUS       DASGCC010000233          237 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.denovo.234, whole genome shotgun sequence.
ACCESSION   DASGCC010000233 DASGCC010000000
VERSION     DASGCC010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.denovo.234"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            <1..210
                     /locus_tag="U1404_001938"
     CDS             <1..210
                     /locus_tag="U1404_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5348821.1"
                     /translation="NIMELSQDFQKKPILNLVKWKYELKVQHNHEIAERYYNEAITFA
                     SLLNQFHLKEKLQMEWEKDTQSLKR"
BASE COUNT           97 a           33 c           44 g           63 t
ORIGIN      
        1 aacatcatgg aattatcaca agattttcag aagaagccaa ttctaaatct tgtgaaatgg
       61 aaatatgaat taaaggtaca acataatcat gaaattgctg agaggtacta taatgaagcg
      121 attacatttg ccagcctact aaatcaattt cacttgaaag aaaaactgca aatggaatgg
      181 gaaaaagata cgcagagtct aaaaagatga catttttgtc ctgttgagaa tctagag
//
LOCUS       DASGCC010000234         5226 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS15Z0029
            SAMEA8942236-rid19044053.guided.126, whole genome shotgun sequence.
ACCESSION   DASGCC010000234 DASGCC010000000
VERSION     DASGCC010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942236
            Sequence Read Archive: ERR6131172
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846343.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846343.1
            Genome Coverage       :: 320x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:53:28
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,942
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 40 of 69
            Pseudo Genes (incomplete)         :: 24 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5226
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942236-rid19044053.guided.126"
                     /isolate="SS15Z0029"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2015"
     gene            147..1874
                     /locus_tag="U1404_001939"
     CDS             147..1874
                     /locus_tag="U1404_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348822.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEMTLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLCIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKATQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENIALGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            1874..3613
                     /locus_tag="U1404_001940"
     CDS             1874..3613
                     /locus_tag="U1404_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5348823.1"
                     /translation="MTILGFLLKQIRRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSAQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     YGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEEVEDDCDRIL
                     EVEQGQVVFEHVNFSYEENRPVLKDITIRAEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            3667..4362
                     /locus_tag="U1404_001941"
     CDS             3667..4362
                     /locus_tag="U1404_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5348824.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHIEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMEERLGMSGEDICYLGDSFENDVVGAKAANWKAIWFNHRKRVEPTAPYQADKVV
                     TDWDELVEVIQSF"
     gene            4516..5085
                     /locus_tag="U1404_001942"
     CDS             4516..5085
                     /locus_tag="U1404_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002925829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM5348825.1"
                     /translation="MELPMTQAFFPIHTLETVSPELRENLATVKKNNGGYIPNLIGLL
                     ANSPTALETYQTVSGINRRSSLNPTEREVVQITAAVANGCGFCVAGHTAISIKQVKMP
                     DVILQALRQGTPIETDAKLDALARFTLAVIHEKGKVEQPLLEEFFQEGYTAENALDVV
                     LGVSLATLCNYANNLINTPINPELQAYAL"
BASE COUNT         1481 a          942 c         1218 g         1585 t
ORIGIN      
        1 ttgtcaactt gccttgatga actccagttc tatcttcgac atcgttttct aggctacttt
       61 tgattttcat tgagtataac gtctatcaat tgttgcttat tgaataaagc ggcaaatgat
      121 aggttataga tttgtaaagg agatatatgt ttcgattaat ttttgactat atcaagcgtc
      181 ataagtggct ctatctattg gttgctgtga ccttgattat ttatgacgcc acacttttgc
      241 taccaacgca aatcattcag cggatggtag atatactaac caagaatgaa ttaacacagg
      301 ccatattggt tcaggagatg accttattgt tattggtaac agtactgaac tatgcaacag
      361 ccttcatttg gcatctgaaa ttatttcagg cttctgtcaa tttcaagttt gatatgcagc
      421 aacgtgcctt taaaaaatta gtgaccatgc ggactccatt ttatgaaaaa ttccgctcag
      481 gagatgtcat gactcgtttt tcaacggatg tggatggcct gatggagatg gtgggttacg
      541 gtcttatgat tgtcgtctat gcaggcggta tgttggcttt tatcattccc acgatgttct
      601 ttattgattg gaaaatttcg ctagtagctt tactaccgat gctgttcatg acactatgta
      661 tattttttat cgggagaaaa caagataagg cgattgatgc caatagagaa gctgtagccc
      721 agctcaataa tgaagttttg gaggtcatcg aaggcattcg agtgactcgg gcttatagta
      781 aaaaagcaac tcaaaaggct caatttcaag ctcgtaccaa gcaattggct caaggtgggg
      841 atcgcatcac ttccttgcaa tcattgtata atccattagc cacagtctgt ttgggattgt
      901 ctactatttt cgtgcttctc atgggggcac aagccgtgaa agcagggcaa ctgaccttgg
      961 gacaagtaat tgcccttcaa ttgtatgtcg gttcgctttt ggagccgttt tggacactgg
     1021 cagatttcat ccttgtttat cagactggta agacatcttt cgaaaaactg caagagctga
     1081 ttgagacggg tgatgatttg gaggctgatg gttctaagga aattgcagag ctgtctagta
     1141 tttccttcaa aaattatagc tttagttatc cacaggcgga aagagccagc ctacaggaca
     1201 tcaattggac actgaaagca gggcaaactg taggtatcgt tgggaaaact ggttcgggaa
     1261 aaacgacctt ggttcgccaa ttcttacgcc agtatccgat tggtcaggga aattttttca
     1321 tcaatcatca atctgtttta gactttaaac gttctagtat agaggaaaaa attggctatg
     1381 ttccccaaga acacattttg ttttcaaggt ctgttggaga aaatattgcc cttgggaaag
     1441 tagctagtag ctctgaggag attgaacaag ccattgccac agcagctttt agtcaagatt
     1501 taaaacggat gactgatggt cttgatacca tgattggtga gcgtggtgtg tctatttctg
     1561 gcggtcagaa acaacggatt tccattgccc gtgctttcct gcgagagcca gatttgctga
     1621 ttctagatga ttctttgtcg gcagtggatg ctaggacaga acgccagatt atccaaaata
     1681 ttcaaaaaga acgtgcaggc aaaaccaatg tcatcgtgac ccatcgtcta tctgctgtca
     1741 accatgcaga ctgggtacta gtcttggatg aggggcgtat cgttgaggaa gggcgtccag
     1801 ctgatttgct tgcccaaaga ggttggtact atgaacaata ccaacgacaa caaagtcagg
     1861 aaggaggaga gtaatgacta ttttaggttt tttattaaaa caaatccgtc gtgttaagtg
     1921 gctatttata gtagctgtcg gcttctatct attggcttcg accatggttc gattggctcc
     1981 tctactgatt cagcaggcga ttgatgggcc gattacggat ttgagcaagg gtttgccttt
     2041 tgatgaagct gttttcttaa accagtcagc tcaatacatg ggaatgatta ttctgggagc
     2101 tattggcttc tacttatcta tgcgtctact catgcattgc gccaatcgta ttgctgaaaa
     2161 tctacgtaat caagcttatg atgttatgca acggttgcct atttcttatt ttgatgataa
     2221 gcccgctgga aaaattgcaa ctagaattgt caatgataca gaaactctgc ggacacaatt
     2281 ttatgggacc ttagttaatg cctttaacaa tattgttcgt ttgctcttta catacggtgt
     2341 cctattttac atgaatagga gtcttggttg gctgatgtta ctcttgatac cactctatat
     2401 cggtattcaa tttgcttaca agaaaatgac agacaagccg atgaaggatt tttatgatgc
     2461 aaggagtgac gtcaatacgc aggtgaatga gaccatgaat ggtgcaagtt tgattcaact
     2521 ttttggacaa gaagagcgca tcatgaaaga atttgaagtg actgctgaca agatgcgtcg
     2581 ggcagataat aagattatct gggcccagtc tcttgccacg tggaatctga gtggttttct
     2641 tcaaaatttg gtcattgctg cgattttaac ggtagtcggc tatcagtttc ttgcgggaca
     2701 gtatggagtt acagctggga aactctttgt ttatgtcaac tatatcgaag gagtcttcat
     2761 tgctttggga gcgctggttc aacagttccc aaatatgctt cgctcgtttg aaacaggtaa
     2821 gcgtctaatg gcccttctag aagaagaggt ggaggacgac tgtgatcgta ttttggaagt
     2881 tgaacaaggg caagtcgtgt ttgaacacgt gaactttagc tatgaagaaa acagaccagt
     2941 tttgaaagat attaccattc gggcagaaaa aggagaaaca gttgctctgg ttgggcatac
     3001 tgggtctggt aagtcttcta ttatgaacct cctctatcgt ttctatgatc cacaggaggg
     3061 acgtgtactg attgatggga aaaacatccg tgattattct cgtgagagcc tgcgcagtca
     3121 catggggatt gttttgcaag atccctatct ctttacaggg acgattgcta gcaatgtttc
     3181 catgaatgaa gaggaagcag atagaacaag aatcatgcag gcgttagaaa aagttggtgc
     3241 agggcctatg ctatctcgct tagagaaagg gattgatgaa ccggttgttg agaagggggc
     3301 ggccttttca agtggggaac gtcagttgat tgcctttgcg cggacactct actctgatcc
     3361 taaaattctg atattggatg aagcaacttc tcatattgat acggagacgg aagaaattat
     3421 ccaacatgct atggaagtgg tgaaagaagg tcggacaacc tttatcattg cccaccgact
     3481 ttctaccatt caaaatgcag accagattct tgtcttagat caaggccgaa ttattgaaca
     3541 tgggaagcat gaagaattgg ttgcacgtgg tggagtatat gctcaaatgc atgagattca
     3601 agcaaaggtg taataagcag ttaaaaattc caagctttgg ctggaatttt ttgctataat
     3661 tgactcatga aagccttaat ttttgatgta gatgatacgc tttatgatca gattcaaccg
     3721 tttgaacgtg ctttggaaag acacattgaa gtagcaaggg agcaaattga accactctac
     3781 ctttcctttc gcagatatgc ggatgaagta tttgaagcga cagcaattgg aaagatgagt
     3841 ctgaaagaca gtcatattta tcggatgaaa catgctttgg cagattttgg gtatcaggtg
     3901 tctgatgcaa cagccttagc tattcaaata gattatgatt attttcaagg gcagatagag
     3961 ctcagtccag tgtttccaga aatattttca tggtgtcagg cgcaaggaat tgcaatgggg
     4021 attattacga atggacctta tagacatcag ttgagaaaga tacgcacgat ggggttagtt
     4081 aattggtttg agctagaaca tgtcctaatt tctggacaag ttggtatcac aaagccaaat
     4141 cctgctattt ttcaactaat ggaagaacgt ttggggatgt caggcgaaga tatttgttat
     4201 ctaggggatt cgtttgaaaa tgatgtggta ggagcgaaag ctgcgaattg gaaggcaatt
     4261 tggtttaatc atagaaagag agtagagcca acagctccgt atcaggcaga taaagtggtg
     4321 acagattggg atgaactggt cgaagttatc cagtctttct agtggtttct acaagggatt
     4381 atcaattttt tataggtgtg ataggtaaaa tatattagca ggatgcctgt ctttatgata
     4441 gtataaaatg caagcataga agtataggtg tgaatccaag cagattttta ttcctactct
     4501 atgaaatttt ttgaaatgga gttacctatg acacaagctt tctttcctat ccatactcta
     4561 gagactgtta gtccagaatt acgagaaaac cttgcgactg tcaagaaaaa taatggcggt
     4621 tatattccta atctcatcgg tcttttagcc aattctccta cagccctaga aacctaccaa
     4681 actgttagtg gtatcaatcg ccgtagtagt ctgaatccga cggagcgtga agtggtacaa
     4741 attacagctg ccgttgccaa tggctgtgga ttttgcgtgg caggtcatac ggctatttct
     4801 atcaagcagg ttaagatgcc tgatgttatt ctacaggctc tacgccaggg aactcccatc
     4861 gaaacggatg caaaattgga tgctctcgct cgatttactc tggctgttat ccatgaaaaa
     4921 ggcaaggttg aacagccctt gctagaggaa tttttccaag agggctacac ggctgaaaat
     4981 gccttggatg tggtgttagg agtcagtctt gcaactcttt gtaattatgc caacaatctc
     5041 atcaacactc ctatcaatcc agaattacag gcctatgctc tgtaggagtt ccagcagaat
     5101 atgtatcgca aactagttag gacgtttaca ttatcctaac tagttttttt gaattaacca
     5161 agtgtgattt tcctaatata catttgatac tcttcgaaaa tcaaaattat ccgttgtcaa
     5221 cttgcc
//
